SMED30018904

Overview


Name	SMED30018904
Smed ID	SMED30018904
Length (bp)	885

Neoblast Clusters

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30018904

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 41

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
parapharyngeal region	SMED30018904	h1SMcG0018856	SmedASXL_074463	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
parapharyngeal region	SMED30018904	h1SMcG0018856	SmedASXL_019902	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
parapharyngeal region	SMED30018904	h1SMcG0018856	SmedASXL_025596	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
parapharyngeal region	SMED30018904	h1SMcG0018856	SmedASXL_015921	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
parapharyngeal region	SMED30018904	h1SMcG0018856	SmedASXL_015920	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
parapharyngeal region	SMED30018904	h1SMcG0018856	SmedASXL_015919	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
Smed sexual biotype	SMED30018904	h1SMcG0018854	Contig14068	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018904	h1SMcG0018854	Contig14068	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018904	h1SMcG0018855	Contig10526	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018904	h1SMcG0018855	Contig10526	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018904	h1SMcG0018856	Contig10526	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018904	h1SMcG0018856	Contig10526	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018904	h1SMcG0018853	Contig14068	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018904	h1SMcG0018853	Contig14068	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018904	h1SMcG0018855	Contig14068	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018904	h1SMcG0018855	Contig14068	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018904	h1SMcG0018856	Contig14068	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018904	h1SMcG0018856	Contig14068	newmark_ests	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30018904	h1SMcG0018856	dd_Smed_v4_1647_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30018904	h1SMcG0018856	dd_Smed_v4_10746_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30018904	h1SMcG0018856	dd_Smed_v4_10746_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30018904	h1SMcG0018855	dd_Smed_v4_10746_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30018904	h1SMcG0018855	dd_Smed_v4_10746_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30018904	h1SMcG0018856	dd_Smed_v4_651_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30018904	h1SMcG0018856	dd_Smed_v4_651_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30018904	h1SMcG0018856	dd_Smed_v4_651_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018904	h1SMcG0018856	Contig46457	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018904	h1SMcG0018856	Contig46457	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018904	h1SMcG0018856	Contig45454	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018904	h1SMcG0018856	Contig45454	newmark_ests	PMID:29674431 Fincher et al., 2018
parapharyngeal region	SMED30018904	h1SMcG0018856	dd_Smed_v6_651_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
parapharyngeal region	SMED30018904	h1SMcG0018856	dd_Smed_v6_1647_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
parapharyngeal region	SMED30018904	h1SMcG0018856	dd_Smed_v6_10746_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
parapharyngeal region	SMED30018904	h1SMcG0018855	dd_Smed_v6_10746_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
parapharyngeal region	SMED30018904	h1SMcG0018856	dd_Smed_v6_12625_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
head region	SMED30018904	h1SMcG0018856	OX_Smed_1.0.05555	ox_Smed_v2	PMID:24238224 Kao et al., 2013
reproductive organ	SMED30018904	h1SMcG0018856	Contig46551	newmark_ests	PMID:28434803 Rouhana et al., 2017
reproductive organ	SMED30018904	h1SMcG0018856	Contig46551	uc_Smed_v2	PMID:28434803 Rouhana et al., 2017
epidermis	SMED30018904	h1SMcG0018856	dd_Smed_v4_1647_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017
Category 2 cell	SMED30018904	h1SMcG0018856	dd_Smed_v4_651_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017
gut	SMED30018904	h1SMcG0018856	dd_Smed_v4_651_0_1	dd_Smed_v4	PMID:30962434 Cote et al., 2019

Note: Hover over icons to view figure legend

Alignments

SMED30018904 aligns in the following genomic locations:


Alignment Location	Alignment Score
v31.000191:165832..182878 +	4310

Homology

[Close]

BLAST of SMED30018904 vs. Planmine SMEST
Match: SMESG000025545.1 (SMESG000025545.1)

HSP 1 Score: 306.605 bits (784), Expect = 9.929e-95
Identity = 173/177 (97.74%), Postives = 174/177 (98.31%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNIESTSTATKRLTTENXXXXXXXXXXXXXXXXXXXLSIVSSKSENR 684
            CAIIDGLVSQ+LINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKN ESTSTATK LTTENITTKSSPSSKSTYIPTTTTL IVSSKSENR
Sbjct: 3773 CAIIDGLVSQFLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNAESTSTATKHLTTENITTKSSPSSKSTYIPTTTTLLIVSSKSENR 3949

HSP 2 Score: 164.466 bits (415), Expect = 2.395e-45
Identity = 78/134 (58.21%), Postives = 100/134 (74.63%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNIE 555
            CAIIDGLVSQYLIND QI ++GK D RVS +R S   G E+S  +LP+F +DFTDNG+ E  FIYQ+I TGGV+T  +  D +++  ++K+EP V  IN+NIKTL   ++SF  ++EKIFLKIQILGCFEK  E
Sbjct: 4645 CAIIDGLVSQYLINDRQITIDGKVDSRVSLVRNSGGPGLELSSNNLPSFKIDFTDNGIHEKPFIYQVIFTGGVETIRVRKDNLESEVSYKDEPVVLLINENIKTLEFTVLSFKNNQEKIFLKIQILGCFEKKTE 4778

HSP 3 Score: 163.696 bits (413), Expect = 5.677e-45
Identity = 78/134 (58.21%), Postives = 100/134 (74.63%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNIE 555
            CAIIDGLVSQYLIND QI ++GK D RVS +R S   G E+S  + P+F +DFTDNG+RE  FIYQ+I TGGV+T  +  D +++  ++K+EP V  IN+NIKTL   ++SF  ++EKIFLKIQILGCFEK  E
Sbjct: 2031 CAIIDGLVSQYLINDRQITIDGKLDSRVSLVRNSGGPGLELSSNNRPSFKMDFTDNGIREKPFIYQVIFTGGVETIRVRKDNLESEVSYKDEPVVLLINENIKTLEFTVLSFKNNQEKIFLKIQILGCFEKKTE 2164

HSP 4 Score: 162.54 bits (410), Expect = 1.495e-44
Identity = 77/134 (57.46%), Postives = 100/134 (74.63%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNIE 555
            CAIIDGLVSQYLIND QI ++GK D RVS +R S   G E+S  + P+F +DFT+NG+RE  FIYQ+I TGGV+T  +  D +++  ++K+EP V  IN+NIKTL   ++SF  ++EKIFLKIQILGCFEK  E
Sbjct: 5637 CAIIDGLVSQYLINDRQITIDGKLDSRVSLVRNSGGPGLELSSNNRPSFKIDFTENGIREKPFIYQVIFTGGVETIRVRKDNLESEVSYKDEPVVLLINENIKTLEFTVLSFKNNQEKIFLKIQILGCFEKKTE 5770

HSP 5 Score: 73.559 bits (179), Expect = 3.007e-14
Identity = 53/138 (38.41%), Postives = 79/138 (57.25%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQN-----MTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNI 552
            C +I+GLVS++ I D Q+ +N K D RVS LR S+  G  IS+ S   F++DFT+NG RE  FI +II +  +           N       TF   P V ++NK +K+   ++   L  ++++ +KIQILGCF KN+
Sbjct: 6193 CKVINGLVSEFYIVDQQVKINNKYDSRVSLLRESDSSGLIISISSSLVFSIDFTENGNREIPFIEKIIFSEQIGKIEFTAIDKTNTVTKQTKTFTTFPPVLELNKPLKSFIFQVTDSLDGRDRVAIKIQILGCF-KNV 6329

HSP 6 Score: 58.5362 bits (140), Expect = 2.739e-9
Identity = 43/148 (29.05%), Postives = 74/148 (50.00%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSF-----LRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKE----------KIFLKIQILGCFEKNI 552
            C +++G+VS   I DHQI +N K D   +      LR S+  G EI+        +D TDNG RE  FI+Q+I+   + +  ++      +++ K    V+Q ++  K   +++  +L S E          K  + ++++GCF KNI
Sbjct: 4818 CTLVNGMVSNVFIADHQISINSKSDKNNNINNAYKLRKSDSSGLEITTEESTAIKIDLTDNGNREIPFIHQLIIGKQLHSFELIFTDRNRISSRK----VYQSDE--KEFTIDVGEYLISVEIVIEKEEVPSKRLVDLEVIGCF-KNI 4958

HSP 7 Score: 58.5362 bits (140), Expect = 3.107e-9
Identity = 43/148 (29.05%), Postives = 74/148 (50.00%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSF-----LRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKE----------KIFLKIQILGCFEKNI 552
            C +++G+VS   I DHQI +N K D   +      LR S+  G EI+        +D TDNG RE  FI+Q+I+   + +  ++      +++ K    V+Q ++  K   +++  +L S E          K  + ++++GCF KNI
Sbjct: 2204 CKLVNGMVSNVFIADHQISINSKSDKNNNINNAYKLRKSDSSGLEITTEESTAIKIDLTDNGNREIPFIHQLIIGKQLHSFELIFTDRNRISSRK----VYQSDE--KEFTIDVGEYLISVEIVIEREEVPSKRLVDLEVIGCF-KNI 2344

[Close]

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNIESTSTATKRLTTENXXXXXXXXXXXXXXXXXXXLSIVSSKSENR 684
            CAIIDGLVSQ+LINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKN ESTSTATK LTTENITTKSSPSSKSTYIPTTTTL IVSSKSENR
Sbjct: 3754 CAIIDGLVSQFLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNAESTSTATKHLTTENITTKSSPSSKSTYIPTTTTLLIVSSKSENR 3930

HSP 2 Score: 164.466 bits (415), Expect = 2.395e-45
Identity = 78/134 (58.21%), Postives = 100/134 (74.63%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNIE 555
            CAIIDGLVSQYLIND QI ++GK D RVS +R S   G E+S  +LP+F +DFTDNG+ E  FIYQ+I TGGV+T  +  D +++  ++K+EP V  IN+NIKTL   ++SF  ++EKIFLKIQILGCFEK  E
Sbjct: 4626 CAIIDGLVSQYLINDRQITIDGKVDSRVSLVRNSGGPGLELSSNNLPSFKIDFTDNGIHEKPFIYQVIFTGGVETIRVRKDNLESEVSYKDEPVVLLINENIKTLEFTVLSFKNNQEKIFLKIQILGCFEKKTE 4759

HSP 3 Score: 163.696 bits (413), Expect = 5.677e-45
Identity = 78/134 (58.21%), Postives = 100/134 (74.63%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNIE 555
            CAIIDGLVSQYLIND QI ++GK D RVS +R S   G E+S  + P+F +DFTDNG+RE  FIYQ+I TGGV+T  +  D +++  ++K+EP V  IN+NIKTL   ++SF  ++EKIFLKIQILGCFEK  E
Sbjct: 2031 CAIIDGLVSQYLINDRQITIDGKLDSRVSLVRNSGGPGLELSSNNRPSFKMDFTDNGIREKPFIYQVIFTGGVETIRVRKDNLESEVSYKDEPVVLLINENIKTLEFTVLSFKNNQEKIFLKIQILGCFEKKTE 2164

HSP 4 Score: 162.54 bits (410), Expect = 1.495e-44
Identity = 77/134 (57.46%), Postives = 100/134 (74.63%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNIE 555
            CAIIDGLVSQYLIND QI ++GK D RVS +R S   G E+S  + P+F +DFT+NG+RE  FIYQ+I TGGV+T  +  D +++  ++K+EP V  IN+NIKTL   ++SF  ++EKIFLKIQILGCFEK  E
Sbjct: 5618 CAIIDGLVSQYLINDRQITIDGKLDSRVSLVRNSGGPGLELSSNNRPSFKIDFTENGIREKPFIYQVIFTGGVETIRVRKDNLESEVSYKDEPVVLLINENIKTLEFTVLSFKNNQEKIFLKIQILGCFEKKTE 5751

HSP 5 Score: 73.559 bits (179), Expect = 3.007e-14
Identity = 53/138 (38.41%), Postives = 79/138 (57.25%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQN-----MTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNI 552
            C +I+GLVS++ I D Q+ +N K D RVS LR S+  G  IS+ S   F++DFT+NG RE  FI +II +  +           N       TF   P V ++NK +K+   ++   L  ++++ +KIQILGCF KN+
Sbjct: 6193 CKVINGLVSEFYIVDQQVKINNKYDSRVSLLRESDSSGLIISISSSLVFSIDFTENGNREIPFIEKIIFSEQIGKIEFTAIDKTNTVTKQTKTFTTFPPVLELNKPLKSFIFQVTDSLDGRDRVAIKIQILGCF-KNV 6329

HSP 6 Score: 58.5362 bits (140), Expect = 2.739e-9
Identity = 43/148 (29.05%), Postives = 74/148 (50.00%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSF-----LRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKE----------KIFLKIQILGCFEKNI 552
            C +++G+VS   I DHQI +N K D   +      LR S+  G EI+        +D TDNG RE  FI+Q+I+   + +  ++      +++ K    V+Q ++  K   +++  +L S E          K  + ++++GCF KNI
Sbjct: 4799 CTLVNGMVSNVFIADHQISINSKSDKNNNINNAYKLRKSDSSGLEITTEESTAIKIDLTDNGNREIPFIHQLIIGKQLHSFELIFTDRNRISSRK----VYQSDE--KEFTIDVGEYLISVEIVIEKEEVPSKRLVDLEVIGCF-KNI 4939

HSP 7 Score: 56.225 bits (134), Expect = 1.411e-8
Identity = 29/74 (39.19%), Postives = 41/74 (55.41%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSF-----LRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIIL 360
            C +++G+VS   I DHQI +N K D   +      LR S+  G EI+        +D TDNG RE  FI+Q+I+
Sbjct: 2204 CKLVNGMVSNVFIADHQISINSKSDKNNNINNAYKLRKSDSSGLEITTEESTAIKIDLTDNGNREIPFIHQLII 2277

[Close]

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNIESTSTATKRLTTENXXXXXXXXXXXXXXXXXXXLSIVSSKSENR 684
            CAIIDGLVSQ+LINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKN ESTSTATK LTTENITTKSSPSSKSTYIPTTTTL IVSSKSENR
Sbjct: 3756 CAIIDGLVSQFLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNAESTSTATKHLTTENITTKSSPSSKSTYIPTTTTLLIVSSKSENR 3932

HSP 2 Score: 164.851 bits (416), Expect = 2.372e-45
Identity = 78/134 (58.21%), Postives = 100/134 (74.63%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNIE 555
            CAIIDGLVSQYLIND QI ++GK D RVS +R S   G E+S  +LP+F +DFTDNG+ E  FIYQ+I TGGV+T  +  D +++  ++K+EP V  IN+NIKTL   ++SF  ++EKIFLKIQILGCFEK  E
Sbjct: 4628 CAIIDGLVSQYLINDRQITIDGKVDSRVSLVRNSGGPGLELSSNNLPSFKIDFTDNGIHEKPFIYQVIFTGGVETIRVRKDNLESEVSYKDEPVVLLINENIKTLEFTVLSFKNNQEKIFLKIQILGCFEKKTE 4761

HSP 3 Score: 163.696 bits (413), Expect = 5.677e-45
Identity = 78/134 (58.21%), Postives = 100/134 (74.63%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNIE 555
            CAIIDGLVSQYLIND QI ++GK D RVS +R S   G E+S  + P+F +DFTDNG+RE  FIYQ+I TGGV+T  +  D +++  ++K+EP V  IN+NIKTL   ++SF  ++EKIFLKIQILGCFEK  E
Sbjct: 2033 CAIIDGLVSQYLINDRQITIDGKLDSRVSLVRNSGGPGLELSSNNRPSFKMDFTDNGIREKPFIYQVIFTGGVETIRVRKDNLESEVSYKDEPVVLLINENIKTLEFTVLSFKNNQEKIFLKIQILGCFEKKTE 2166

HSP 4 Score: 162.54 bits (410), Expect = 1.495e-44
Identity = 77/134 (57.46%), Postives = 100/134 (74.63%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNIE 555
            CAIIDGLVSQYLIND QI ++GK D RVS +R S   G E+S  + P+F +DFT+NG+RE  FIYQ+I TGGV+T  +  D +++  ++K+EP V  IN+NIKTL   ++SF  ++EKIFLKIQILGCFEK  E
Sbjct: 5620 CAIIDGLVSQYLINDRQITIDGKLDSRVSLVRNSGGPGLELSSNNRPSFKIDFTENGIREKPFIYQVIFTGGVETIRVRKDNLESEVSYKDEPVVLLINENIKTLEFTVLSFKNNQEKIFLKIQILGCFEKKTE 5753

HSP 5 Score: 73.559 bits (179), Expect = 2.952e-14
Identity = 53/138 (38.41%), Postives = 79/138 (57.25%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQN-----MTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNI 552
            C +I+GLVS++ I D Q+ +N K D RVS LR S+  G  IS+ S   F++DFT+NG RE  FI +II +  +           N       TF   P V ++NK +K+   ++   L  ++++ +KIQILGCF KN+
Sbjct: 6195 CKVINGLVSEFYIVDQQVKINNKYDSRVSLLRESDSSGLIISISSSLVFSIDFTENGNREIPFIEKIIFSEQIGKIEFTAIDKTNTVTKQTKTFTTFPPVLELNKPLKSFIFQVTDSLDGRDRVAIKIQILGCF-KNV 6331

HSP 6 Score: 58.5362 bits (140), Expect = 2.641e-9
Identity = 43/148 (29.05%), Postives = 74/148 (50.00%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSF-----LRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKE----------KIFLKIQILGCFEKNI 552
            C +++G+VS   I DHQI +N K D   +      LR S+  G EI+        +D TDNG RE  FI+Q+I+   + +  ++      +++ K    V+Q ++  K   +++  +L S E          K  + ++++GCF KNI
Sbjct: 4801 CTLVNGMVSNVFIADHQISINSKSDKNNNINNAYKLRKSDSSGLEITTEESTAIKIDLTDNGNREIPFIHQLIIGKQLHSFELIFTDRNRISSRK----VYQSDE--KEFTIDVGEYLISVEIVIEKEEVPSKRLVDLEVIGCF-KNI 4941

HSP 7 Score: 56.225 bits (134), Expect = 1.386e-8
Identity = 29/74 (39.19%), Postives = 41/74 (55.41%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSF-----LRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIIL 360
            C +++G+VS   I DHQI +N K D   +      LR S+  G EI+        +D TDNG RE  FI+Q+I+
Sbjct: 2206 CKLVNGMVSNVFIADHQISINSKSDKNNNINNAYKLRKSDSSGLEITTEESTAIKIDLTDNGNREIPFIHQLII 2279

[Close]

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNIESTSTATKRLTTENXXXXXXXXXXXXXXXXXXXLSIVSSKSENR 684
            CAIIDGLVSQ+LINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKN ESTSTATK LTTENITTKSSPSSKSTYIPTTTTL IVSSKSENR
Sbjct: 3775 CAIIDGLVSQFLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNAESTSTATKHLTTENITTKSSPSSKSTYIPTTTTLLIVSSKSENR 3951

HSP 2 Score: 164.851 bits (416), Expect = 2.372e-45
Identity = 78/134 (58.21%), Postives = 100/134 (74.63%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNIE 555
            CAIIDGLVSQYLIND QI ++GK D RVS +R S   G E+S  +LP+F +DFTDNG+ E  FIYQ+I TGGV+T  +  D +++  ++K+EP V  IN+NIKTL   ++SF  ++EKIFLKIQILGCFEK  E
Sbjct: 4647 CAIIDGLVSQYLINDRQITIDGKVDSRVSLVRNSGGPGLELSSNNLPSFKIDFTDNGIHEKPFIYQVIFTGGVETIRVRKDNLESEVSYKDEPVVLLINENIKTLEFTVLSFKNNQEKIFLKIQILGCFEKKTE 4780

HSP 3 Score: 163.696 bits (413), Expect = 5.677e-45
Identity = 78/134 (58.21%), Postives = 100/134 (74.63%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNIE 555
            CAIIDGLVSQYLIND QI ++GK D RVS +R S   G E+S  + P+F +DFTDNG+RE  FIYQ+I TGGV+T  +  D +++  ++K+EP V  IN+NIKTL   ++SF  ++EKIFLKIQILGCFEK  E
Sbjct: 2033 CAIIDGLVSQYLINDRQITIDGKLDSRVSLVRNSGGPGLELSSNNRPSFKMDFTDNGIREKPFIYQVIFTGGVETIRVRKDNLESEVSYKDEPVVLLINENIKTLEFTVLSFKNNQEKIFLKIQILGCFEKKTE 2166

HSP 4 Score: 162.54 bits (410), Expect = 1.495e-44
Identity = 77/134 (57.46%), Postives = 100/134 (74.63%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNIE 555
            CAIIDGLVSQYLIND QI ++GK D RVS +R S   G E+S  + P+F +DFT+NG+RE  FIYQ+I TGGV+T  +  D +++  ++K+EP V  IN+NIKTL   ++SF  ++EKIFLKIQILGCFEK  E
Sbjct: 5639 CAIIDGLVSQYLINDRQITIDGKLDSRVSLVRNSGGPGLELSSNNRPSFKIDFTENGIREKPFIYQVIFTGGVETIRVRKDNLESEVSYKDEPVVLLINENIKTLEFTVLSFKNNQEKIFLKIQILGCFEKKTE 5772

HSP 5 Score: 73.559 bits (179), Expect = 2.952e-14
Identity = 53/138 (38.41%), Postives = 79/138 (57.25%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQN-----MTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNI 552
            C +I+GLVS++ I D Q+ +N K D RVS LR S+  G  IS+ S   F++DFT+NG RE  FI +II +  +           N       TF   P V ++NK +K+   ++   L  ++++ +KIQILGCF KN+
Sbjct: 6195 CKVINGLVSEFYIVDQQVKINNKYDSRVSLLRESDSSGLIISISSSLVFSIDFTENGNREIPFIEKIIFSEQIGKIEFTAIDKTNTVTKQTKTFTTFPPVLELNKPLKSFIFQVTDSLDGRDRVAIKIQILGCF-KNV 6331

HSP 6 Score: 58.5362 bits (140), Expect = 2.641e-9
Identity = 43/148 (29.05%), Postives = 74/148 (50.00%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSF-----LRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKE----------KIFLKIQILGCFEKNI 552
            C +++G+VS   I DHQI +N K D   +      LR S+  G EI+        +D TDNG RE  FI+Q+I+   + +  ++      +++ K    V+Q ++  K   +++  +L S E          K  + ++++GCF KNI
Sbjct: 4820 CTLVNGMVSNVFIADHQISINSKSDKNNNINNAYKLRKSDSSGLEITTEESTAIKIDLTDNGNREIPFIHQLIIGKQLHSFELIFTDRNRISSRK----VYQSDE--KEFTIDVGEYLISVEIVIEKEEVPSKRLVDLEVIGCF-KNI 4960

HSP 7 Score: 58.5362 bits (140), Expect = 2.997e-9
Identity = 43/148 (29.05%), Postives = 74/148 (50.00%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSF-----LRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKE----------KIFLKIQILGCFEKNI 552
            C +++G+VS   I DHQI +N K D   +      LR S+  G EI+        +D TDNG RE  FI+Q+I+   + +  ++      +++ K    V+Q ++  K   +++  +L S E          K  + ++++GCF KNI
Sbjct: 2206 CKLVNGMVSNVFIADHQISINSKSDKNNNINNAYKLRKSDSSGLEITTEESTAIKIDLTDNGNREIPFIHQLIIGKQLHSFELIFTDRNRISSRK----VYQSDE--KEFTIDVGEYLISVEIVIEREEVPSKRLVDLEVIGCF-KNI 2346

[Close]

BLAST of SMED30018904 vs. Planmine SMEST
Match: SMESG000025545.1 (SMESG000025545.1)

HSP 1 Score: 306.605 bits (784), Expect = 9.930e-95
Identity = 173/177 (97.74%), Postives = 174/177 (98.31%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNIESTSTATKRLTTENXXXXXXXXXXXXXXXXXXXLSIVSSKSENR 684
            CAIIDGLVSQ+LINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKN ESTSTATK LTTENITTKSSPSSKSTYIPTTTTL IVSSKSENR
Sbjct: 3773 CAIIDGLVSQFLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNAESTSTATKHLTTENITTKSSPSSKSTYIPTTTTLLIVSSKSENR 3949

HSP 2 Score: 164.466 bits (415), Expect = 2.442e-45
Identity = 78/134 (58.21%), Postives = 100/134 (74.63%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNIE 555
            CAIIDGLVSQYLIND QI ++GK D RVS +R S   G E+S  +LP+F +DFTDNG+ E  FIYQ+I TGGV+T  +  D +++  ++K+EP V  IN+NIKTL   ++SF  ++EKIFLKIQILGCFEK  E
Sbjct: 4645 CAIIDGLVSQYLINDRQITIDGKVDSRVSLVRNSGGPGLELSSNNLPSFKIDFTDNGIHEKPFIYQVIFTGGVETIRVRKDNLESEVSYKDEPVVLLINENIKTLEFTVLSFKNNQEKIFLKIQILGCFEKKTE 4778

HSP 3 Score: 163.696 bits (413), Expect = 5.843e-45
Identity = 78/134 (58.21%), Postives = 100/134 (74.63%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNIE 555
            CAIIDGLVSQYLIND QI ++GK D RVS +R S   G E+S  + P+F +DFTDNG+RE  FIYQ+I TGGV+T  +  D +++  ++K+EP V  IN+NIKTL   ++SF  ++EKIFLKIQILGCFEK  E
Sbjct: 2031 CAIIDGLVSQYLINDRQITIDGKLDSRVSLVRNSGGPGLELSSNNRPSFKMDFTDNGIREKPFIYQVIFTGGVETIRVRKDNLESEVSYKDEPVVLLINENIKTLEFTVLSFKNNQEKIFLKIQILGCFEKKTE 2164

HSP 4 Score: 162.155 bits (409), Expect = 1.539e-44
Identity = 77/134 (57.46%), Postives = 100/134 (74.63%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNIE 555
            CAIIDGLVSQYLIND QI ++GK D RVS +R S   G E+S  + P+F +DFT+NG+RE  FIYQ+I TGGV+T  +  D +++  ++K+EP V  IN+NIKTL   ++SF  ++EKIFLKIQILGCFEK  E
Sbjct: 5637 CAIIDGLVSQYLINDRQITIDGKLDSRVSLVRNSGGPGLELSSNNRPSFKIDFTENGIREKPFIYQVIFTGGVETIRVRKDNLESEVSYKDEPVVLLINENIKTLEFTVLSFKNNQEKIFLKIQILGCFEKKTE 5770

HSP 5 Score: 73.559 bits (179), Expect = 3.178e-14
Identity = 54/138 (39.13%), Postives = 82/138 (59.42%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILT---GGVKTANI--LTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNI 552
            C +I+GLVS++ I D Q+ +N K D RVS LR S+  G  IS+ S   F++DFT+NG RE  FI +II +   G ++   I       +   TF   P V ++NK +K+   ++   L  ++++ +KIQILGCF KN+
Sbjct: 6212 CKVINGLVSEFYIVDQQVKINNKYDSRVSLLRESDSSGLIISISSSLVFSIDFTENGNREIPFIEKIIFSEQIGKIEFTAIDKTNTVTKQTKTFTTFPPVLELNKPLKSFIFQVTDSLDGRDRVAIKIQILGCF-KNV 6348

HSP 6 Score: 58.5362 bits (140), Expect = 2.789e-9
Identity = 43/148 (29.05%), Postives = 74/148 (50.00%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSF-----LRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKE----------KIFLKIQILGCFEKNI 552
            C +++G+VS   I DHQI +N K D   +      LR S+  G EI+        +D TDNG RE  FI+Q+I+   + +  ++      +++ K    V+Q ++  K   +++  +L S E          K  + ++++GCF KNI
Sbjct: 4818 CTLVNGMVSNVFIADHQISINSKSDKNNNINNAYKLRKSDSSGLEITTEESTAIKIDLTDNGNREIPFIHQLIIGKQLHSFELIFTDRNRISSRK----VYQSDE--KEFTIDVGEYLISVEIVIEKEEVPSKRLVDLEVIGCF-KNI 4958

HSP 7 Score: 58.5362 bits (140), Expect = 3.164e-9
Identity = 43/148 (29.05%), Postives = 74/148 (50.00%), Query Frame = 1

Query:  154 CAIIDGLVSQYLINDHQIMVNGKPDPRVSF-----LRFSNEIGFEISLVSLPTFTVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQINKNIKTLGLELMSFLTSKE----------KIFLKIQILGCFEKNI 552
            C +++G+VS   I DHQI +N K D   +      LR S+  G EI+        +D TDNG RE  FI+Q+I+   + +  ++      +++ K    V+Q ++  K   +++  +L S E          K  + ++++GCF KNI
Sbjct: 2204 CKLVNGMVSNVFIADHQISINSKSDKNNNINNAYKLRKSDSSGLEITTEESTAIKIDLTDNGNREIPFIHQLIIGKQLHSFELIFTDRNRISSRK----VYQSDE--KEFTIDVGEYLISVEIVIEREEVPSKRLVDLEVIGCF-KNI 2344

The following BLAST results are available for this feature:

BLAST of SMED30018904 vs. Ensembl Human
BLAST of SMED30018904 vs. Ensembl Celegans
BLAST of SMED30018904 vs. Ensembl Fly
BLAST of SMED30018904 vs. Ensembl Zebrafish
BLAST of SMED30018904 vs. Ensembl Xenopus
BLAST of SMED30018904 vs. Ensembl Mouse
BLAST of SMED30018904 vs. UniProt/SwissProt
BLAST of SMED30018904 vs. TrEMBL
BLAST of SMED30018904 vs. Ensembl Cavefish
BLAST of SMED30018904 vs. Ensembl Sea Lamprey
BLAST of SMED30018904 vs. Ensembl Yeast
BLAST of SMED30018904 vs. Ensembl Nematostella
BLAST of SMED30018904 vs. Ensembl Medaka
BLAST of SMED30018904 vs. Planmine SMEST

BLAST of SMED30018904 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30018904 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30018904 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30018904 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30018904 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30018904 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30018904 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30018904 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30018904 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30018904 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30018904 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30018904 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30018904 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30018904 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000025545.1	9.929e-95	97.74	SMESG000025545.1	[more]
SMESG000025545.1	9.929e-95	97.74	SMESG000025545.1	[more]
SMESG000025545.1	9.929e-95	97.74	SMESG000025545.1	[more]
SMESG000025545.1	9.929e-95	97.74	SMESG000025545.1	[more]
SMESG000025545.1	9.930e-95	97.74	SMESG000025545.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30018904 ID=SMED30018904|Name=SMED30018904|organism=Schmidtea mediterranea sexual|type=transcript|length=885bp
ACAACAACAACTCCATTAAGTGTATCCACAACTACTCTTCCGCCATCAGT
TTCTACAACGACTATATCTACCAGTAGTCCAACTACTAAATCAACACCAA
CTGCTTCATCAACAAGACCTACAACTACTACTCAGCAACGCTCTACTCCA
CCTTGTGCTATTATAGATGGATTAGTTTCACAATATCTTATAAATGATCA
TCAAATTATGGTTAACGGTAAACCAGATCCTCGGGTTTCATTCCTTCGGT
TTTCAAATGAAATTGGATTTGAAATTTCACTGGTATCTCTTCCGACCTTT
ACAGTTGATTTTACTGACAATGGCCTTCGGGAGACAATGTTTATTTATCA
AATTATTCTTACCGGAGGAGTTAAAACTGCAAACATACTAACAGATGGTG
TTCAGAATATGACTACCTTTAAAGAAGAGCCAGCAGTCTTTCAGATAAAT
AAAAATATAAAGACTTTAGGATTAGAACTAATGAGTTTCTTAACAAGTAA
AGAGAAAATCTTCCTTAAAATTCAAATTTTGGGATGCTTCGAAAAAAATA
TCGAATCAACATCAACAGCAACCAAACGTTTAACAACTGAAAATATTACA
ACAAAATCATCTCCATCATCCAAATCAACTTACATTCCAACAACAACTAC
ACTTTCAATTGTTTCTTCAAAATCGGAAAACAGAACTACTAGTATACCTA
CAACATCTACCACGACACCATATACTGAAATACATACGATTTCAACAACA
CCATTACCTCCAATAACATCATCAAAAATAACAACACGATCGAGAGAAGT
AACAACAACTACATTTACTGTAACTAGTCCAACTACTAAAACACCAACTA
CCGGATCAACAACAACTACTGGACCAACAACAACC

protein sequence of SMED30018904-orf-1

>SMED30018904-orf-1 ID=SMED30018904-orf-1|Name=SMED30018904-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=295bp
TTTTPLSVSTTTLPPSVSTTTISTSSPTTKSTPTASSTRPTTTTQQRSTP
PCAIIDGLVSQYLINDHQIMVNGKPDPRVSFLRFSNEIGFEISLVSLPTF
TVDFTDNGLRETMFIYQIILTGGVKTANILTDGVQNMTTFKEEPAVFQIN
KNIKTLGLELMSFLTSKEKIFLKIQILGCFEKNIESTSTATKRLTTENIT
TKSSPSSKSTYIPTTTTLSIVSSKSENRTTSIPTTSTTTPYTEIHTISTT
PLPPITSSKITTRSREVTTTTFTVTSPTTKTPTTGSTTTTGPTTT

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000420	parapharyngeal region

Vocabulary: **INTERPRO**
Term	Definition
IPR013809	ENTH

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49

Main menu

SMED30018904

Zeng et. al., 2018

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 41

Owlery

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