RNA-binding protein 39

Overview
NameRNA-binding protein 39
Smed IDSMED30018877
Length (bp)1940
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of RNA-binding protein 39 (SMED30018877) t-SNE clustered cells

Violin plots show distribution of expression levels for RNA-binding protein 39 (SMED30018877) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RNA-binding protein 39 (SMED30018877) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RNA-binding protein 39 (SMED30018877) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30018877

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
central nervous systemSMED30018877SMESG000003347.1 dd_Smed_v4_1932_0_1dd_Smed_v4PMID:27063937
Scimone et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
parenchymal cellSMED30018877SMESG000003347.1 dd_Smed_v4_1932_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30018877SMESG000003347.1 dd_Smed_v4_1932_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Human
Match: RBM39 (RNA binding motif protein 39 [Source:HGNC Symbol;Acc:HGNC:15923])

HSP 1 Score: 276.944 bits (707), Expect = 8.089e-85
Identity = 151/379 (39.84%), Postives = 221/379 (58.31%), Query Frame = 2 
Query:  365 VEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFG--------ENQGVSMTAADRLGLMAKLAVGTGLQVVPKANA---------------VQTPI-----------------INSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            ++ LT EE+DART++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+++F DV SV  A+ L GQ+++GVPI ++   +EK RAA    N+      GP +L V +LH  I E M+  IF P+G+I+ ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E    +           E  G+ +    RL LMA+LA GTGLQ+ P A                 +QT +                 + +QCF LSNMF+ +   E  +  E++DDV+ ECN+ GGV H+++D+ S +G +YVKCPSI  A   V+ LHGR F G++ITA Y+PL  YH +FPDS++  +L+
Sbjct:  142 IDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAA-AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLL 519
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Human
Match: RBM39 (RNA binding motif protein 39 [Source:HGNC Symbol;Acc:HGNC:15923])

HSP 1 Score: 274.633 bits (701), Expect = 4.355e-84
Identity = 151/385 (39.22%), Postives = 221/385 (57.40%), Query Frame = 2 
Query:  365 VEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFG--------ENQGVSMTAADRLGLMAKLAVGTGLQVVPKANA---------------------VQTPI-----------------INSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            ++ LT EE+DART++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+++F DV SV  A+ L GQ+++GVPI ++   +EK RAA    N+      GP +L V +LH  I E M+  IF P+G+I+ ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E    +           E  G+ +    RL LMA+LA GTGLQ+ P A                       +QT +                 + +QCF LSNMF+ +   E  +  E++DDV+ ECN+ GGV H+++D+ S +G +YVKCPSI  A   V+ LHGR F G++ITA Y+PL  YH +FPDS++  +L+
Sbjct:  120 IDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAA-AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLL 503
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Human
Match: RBM39 (RNA binding motif protein 39 [Source:HGNC Symbol;Acc:HGNC:15923])

HSP 1 Score: 274.633 bits (701), Expect = 8.300e-84
Identity = 151/385 (39.22%), Postives = 221/385 (57.40%), Query Frame = 2 
Query:  365 VEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFG--------ENQGVSMTAADRLGLMAKLAVGTGLQVVPKANA---------------------VQTPI-----------------INSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            ++ LT EE+DART++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+++F DV SV  A+ L GQ+++GVPI ++   +EK RAA    N+      GP +L V +LH  I E M+  IF P+G+I+ ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E    +           E  G+ +    RL LMA+LA GTGLQ+ P A                       +QT +                 + +QCF LSNMF+ +   E  +  E++DDV+ ECN+ GGV H+++D+ S +G +YVKCPSI  A   V+ LHGR F G++ITA Y+PL  YH +FPDS++  +L+
Sbjct:  142 IDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAA-AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLL 525
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Human
Match: RBM39 (RNA binding motif protein 39 [Source:HGNC Symbol;Acc:HGNC:15923])

HSP 1 Score: 207.994 bits (528), Expect = 7.422e-61
Identity = 122/343 (35.57%), Postives = 180/343 (52.48%), Query Frame = 2 
Query:  365 VEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFG--------ENQGVSMTAADRLGLMAKLAVGTGLQVVPKANA---------------------VQTPI-----------------INSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVA 1255
            ++ LT EE+DART++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+++F DV SV  A+ L GQ+++GVPI ++   +EK RAA    N+      GP +L V +LH  I E M+  IF P+G+                     F   E AK  +EQ+N F LAG+ +K+  V E    +           E  G+ +    RL LMA+LA GTGLQ+ P A                       +QT +                 + +QCF LSNMF+ +   E  +  E++DDV+ ECN+ GGV H+++D+ S +G +YVKCPSI  A
Sbjct:   15 IDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAA-AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGR---------------------FSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAA 335
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Human
Match: RBM39 (RNA binding motif protein 39 [Source:HGNC Symbol;Acc:HGNC:15923])

HSP 1 Score: 178.333 bits (451), Expect = 5.057e-49
Identity = 98/235 (41.70%), Postives = 142/235 (60.43%), Query Frame = 2 
Query:  365 VEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFG--------ENQGVSMTAADRLGLMAKLAVGTGLQVVPKA 1042
            ++ LT EE+DART++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+++F DV SV  A+ L GQ+++GVPI ++   +EK RAA    N+      GP +L V +LH  I E M+  IF P+G+I+ ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E    +           E  G+ +    RL LMA+LA GTGLQ+ P A
Sbjct:  142 IDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAA-AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAA 375
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Celegans
Match: rbm-39 (RNA Binding Motif protein homolog [Source:UniProtKB/TrEMBL;Acc:Q8MXS6])

HSP 1 Score: 293.123 bits (749), Expect = 1.957e-92
Identity = 149/360 (41.39%), Postives = 227/360 (63.06%), Query Frame = 2 
Query:  371 QLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYF----RGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKI-------APVVE-------EGGLNEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKANA---------VQTPIINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVK 1369
            +LT EE+D RT+ I Q++   R RDLE+FF  VG +  VR++ D++TG+S+G+ +++F D ESV   L LNGQ+LMG P+QI+   +E+ RAA  ++ S+  +     +GPT + V NLHP+I+E+MI +IF  +G+I+++ L  D    + G A I FR  ++A+   EQ+N+F LAG+ +++       AP V+       +  L++ G+ QG S+ A  R  LMAKLA GTG  +   A+A          Q P I +QCF+LSNMFD     E  +  ++++DV+ +C   GG  HV +D+ S +G +YVKCPSI +A++ VS LHGR F G+VITANY+P+  YH +FPD++  +
Sbjct:   16 ELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESVPLGLALNGQRLMGAPLQIQRTCAERNRAANSSVASTLGFVAPGNKGPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSIKQESQAPAVKKEEASIHQRSLDDVGDRQGFSLGAGGRQQLMAKLAQGTGSGMELTASAQMAAQHAGHSQIPSIATQCFLLSNMFDPSKETEPAWDHDIREDVIEQCLAHGGALHVFVDKGSEQGNVYVKCPSIVIAHQAVSALHGRWFSGKVITANYVPVNSYHDLFPDAVHAR 375
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Celegans
Match: rbm-39 (RNA Binding Motif protein homolog [Source:UniProtKB/TrEMBL;Acc:Q8MXS6])

HSP 1 Score: 293.123 bits (749), Expect = 1.957e-92
Identity = 149/360 (41.39%), Postives = 227/360 (63.06%), Query Frame = 2 
Query:  371 QLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYF----RGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKI-------APVVE-------EGGLNEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKANA---------VQTPIINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVK 1369
            +LT EE+D RT+ I Q++   R RDLE+FF  VG +  VR++ D++TG+S+G+ +++F D ESV   L LNGQ+LMG P+QI+   +E+ RAA  ++ S+  +     +GPT + V NLHP+I+E+MI +IF  +G+I+++ L  D    + G A I FR  ++A+   EQ+N+F LAG+ +++       AP V+       +  L++ G+ QG S+ A  R  LMAKLA GTG  +   A+A          Q P I +QCF+LSNMFD     E  +  ++++DV+ +C   GG  HV +D+ S +G +YVKCPSI +A++ VS LHGR F G+VITANY+P+  YH +FPD++  +
Sbjct:   16 ELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESVPLGLALNGQRLMGAPLQIQRTCAERNRAANSSVASTLGFVAPGNKGPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSIKQESQAPAVKKEEASIHQRSLDDVGDRQGFSLGAGGRQQLMAKLAQGTGSGMELTASAQMAAQHAGHSQIPSIATQCFLLSNMFDPSKETEPAWDHDIREDVIEQCLAHGGALHVFVDKGSEQGNVYVKCPSIVIAHQAVSALHGRWFSGKVITANYVPVNSYHDLFPDAVHAR 375
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Celegans
Match: rbm-39 (RNA Binding Motif protein homolog [Source:UniProtKB/TrEMBL;Acc:Q8MXS6])

HSP 1 Score: 293.123 bits (749), Expect = 1.957e-92
Identity = 149/360 (41.39%), Postives = 227/360 (63.06%), Query Frame = 2 
Query:  371 QLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYF----RGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKI-------APVVE-------EGGLNEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKANA---------VQTPIINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVK 1369
            +LT EE+D RT+ I Q++   R RDLE+FF  VG +  VR++ D++TG+S+G+ +++F D ESV   L LNGQ+LMG P+QI+   +E+ RAA  ++ S+  +     +GPT + V NLHP+I+E+MI +IF  +G+I+++ L  D    + G A I FR  ++A+   EQ+N+F LAG+ +++       AP V+       +  L++ G+ QG S+ A  R  LMAKLA GTG  +   A+A          Q P I +QCF+LSNMFD     E  +  ++++DV+ +C   GG  HV +D+ S +G +YVKCPSI +A++ VS LHGR F G+VITANY+P+  YH +FPD++  +
Sbjct:   16 ELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESVPLGLALNGQRLMGAPLQIQRTCAERNRAANSSVASTLGFVAPGNKGPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSIKQESQAPAVKKEEASIHQRSLDDVGDRQGFSLGAGGRQQLMAKLAQGTGSGMELTASAQMAAQHAGHSQIPSIATQCFLLSNMFDPSKETEPAWDHDIREDVIEQCLAHGGALHVFVDKGSEQGNVYVKCPSIVIAHQAVSALHGRWFSGKVITANYVPVNSYHDLFPDAVHAR 375
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Celegans
Match: rbm-39 (RNA Binding Motif protein homolog [Source:UniProtKB/TrEMBL;Acc:Q8MXS6])

HSP 1 Score: 293.508 bits (750), Expect = 6.900e-91
Identity = 149/360 (41.39%), Postives = 227/360 (63.06%), Query Frame = 2 
Query:  371 QLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYF----RGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKI-------APVVE-------EGGLNEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKANA---------VQTPIINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVK 1369
            +LT EE+D RT+ I Q++   R RDLE+FF  VG +  VR++ D++TG+S+G+ +++F D ESV   L LNGQ+LMG P+QI+   +E+ RAA  ++ S+  +     +GPT + V NLHP+I+E+MI +IF  +G+I+++ L  D    + G A I FR  ++A+   EQ+N+F LAG+ +++       AP V+       +  L++ G+ QG S+ A  R  LMAKLA GTG  +   A+A          Q P I +QCF+LSNMFD     E  +  ++++DV+ +C   GG  HV +D+ S +G +YVKCPSI +A++ VS LHGR F G+VITANY+P+  YH +FPD++  +
Sbjct:  161 ELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESVPLGLALNGQRLMGAPLQIQRTCAERNRAANSSVASTLGFVAPGNKGPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSIKQESQAPAVKKEEASIHQRSLDDVGDRQGFSLGAGGRQQLMAKLAQGTGSGMELTASAQMAAQHAGHSQIPSIATQCFLLSNMFDPSKETEPAWDHDIREDVIEQCLAHGGALHVFVDKGSEQGNVYVKCPSIVIAHQAVSALHGRWFSGKVITANYVPVNSYHDLFPDAVHAR 520
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Celegans
Match: sap-49 (Splicing factor 3B subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q09442])

HSP 1 Score: 72.0182 bits (175), Expect = 3.292e-13
Identity = 61/208 (29.33%), Postives = 102/208 (49.04%), Query Frame = 2 
Query:  374 LTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALD-LNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDEL-RLMKDI-RGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFGENQGVSMTAADRL 988
            + E  +DA TIY+  L  +V    L +  VQ G +  V +  D  T   +G  F++F   E  + A+  LN  KL G PI++      K  A E  M+           + V NL P+++E+++ + F+ +G I ++ ++M+D+  GTS G AFI F   E +   +E MN   L  + + ++   +    +  GE  G   TAA+R+
Sbjct:    6 IVERNQDA-TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVN-----KASAHEKNMDVG-------ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKR---DSKGERHG---TAAERM 194
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Fly
Match: Caper (gene:FBgn0031883 transcript:FBtr0089640)

HSP 1 Score: 295.049 bits (754), Expect = 3.215e-91
Identity = 164/380 (43.16%), Postives = 223/380 (58.68%), Query Frame = 2 
Query:  305 NPRKRSVSRGRRQEGSDGRTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFG------ENQGVSMTAADRLGLMAKLAVGTGLQV-----------VPKANAVQ----TPIINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            +PR+RS        G+D  T  +L+ EE+DART++  QLS RVR RDLE+FF  VGK+  VRL+  NKT + +G+A+I+F D ESV  AL L+GQ+L+GVPI ++   +EK R              GP +L V +LH  I E M+  IF P+GKID ++L+ D   G S G  FI +   ++AK  +EQ+N F LAG+L+K+  V E   +N         +  G+ + A  RL LM KLA G GL V            P+   +Q     P I +QCF+LSNMFD +      +  E++DDV+ EC + GGV H+H+D  S  G +YVKCPS   A   V+ LHGR F GRVITA Y+P+ +YH MFPDSI+   LV
Sbjct:  211 SPRRRSPP-----NGADRTTPTELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTERLDMNTTSLDTDEMDRTGIDLGATGRLQLMFKLAEGAGLAVPQAAANALLATAPQPAPLQQQEVAPSIATQCFILSNMFDPRTETNPTWDVEIRDDVLEECAKHGGVLHIHVDTISHTGTVYVKCPSTTTAVLAVNALHGRWFAGRVITAAYVPVINYHTMFPDSINAVDLV 585
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Fly
Match: Caper (gene:FBgn0031883 transcript:FBtr0089636)

HSP 1 Score: 295.049 bits (754), Expect = 3.215e-91
Identity = 164/380 (43.16%), Postives = 223/380 (58.68%), Query Frame = 2 
Query:  305 NPRKRSVSRGRRQEGSDGRTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFG------ENQGVSMTAADRLGLMAKLAVGTGLQV-----------VPKANAVQ----TPIINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            +PR+RS        G+D  T  +L+ EE+DART++  QLS RVR RDLE+FF  VGK+  VRL+  NKT + +G+A+I+F D ESV  AL L+GQ+L+GVPI ++   +EK R              GP +L V +LH  I E M+  IF P+GKID ++L+ D   G S G  FI +   ++AK  +EQ+N F LAG+L+K+  V E   +N         +  G+ + A  RL LM KLA G GL V            P+   +Q     P I +QCF+LSNMFD +      +  E++DDV+ EC + GGV H+H+D  S  G +YVKCPS   A   V+ LHGR F GRVITA Y+P+ +YH MFPDSI+   LV
Sbjct:  211 SPRRRSPP-----NGADRTTPTELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTERLDMNTTSLDTDEMDRTGIDLGATGRLQLMFKLAEGAGLAVPQAAANALLATAPQPAPLQQQEVAPSIATQCFILSNMFDPRTETNPTWDVEIRDDVLEECAKHGGVLHIHVDTISHTGTVYVKCPSTTTAVLAVNALHGRWFAGRVITAAYVPVINYHTMFPDSINAVDLV 585
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Fly
Match: U2af50 (gene:FBgn0005411 transcript:FBtr0307177)

HSP 1 Score: 73.1738 bits (178), Expect = 1.523e-13
Identity = 77/347 (22.19%), Postives = 143/347 (41.21%), Query Frame = 2 
Query:  389 KDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRL-------VLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIR-------------TVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDI-RGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKI--APVVEEGGLNEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKANAVQTPIINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDR-----KSPR-GEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHK 1342
            + AR +Y+  +   V   ++ +FF Q  +M +V L       VL  +    +  AF++FR ++   +A+  +G  L G  ++IR             T + +    + G +  S +    P K+ +  L   +N+  ++E+   +GK+    L+KD   G S G AF  +         +  +N   L  + L +  A V  +   N     Q V +                    VP  + V T    ++   L NM    +  +++  +++ +D+  EC ++G V  V I R     + P  G+++V+  S+    K    L GR F  RV+  +Y   + YH+
Sbjct:   34 RQARRLYVGNIPFGVTEEEMMEFFNQ--QMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQPMPGITDTPAIKPAVVSSGVI--STVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTTQSVMLQ-------------------VPGLSNVVTSGPPTEVLCLLNMVTPDELRDEEEYEDILEDIKEECTKYGVVRSVEIPRPIEGVEVPGCGKVFVEFNSVLDCQKAQQALTGRKFSDRVVVTSYFDPDKYHR 357
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Fly
Match: CG34354 (gene:FBgn0085383 transcript:FBtr0304917)

HSP 1 Score: 73.559 bits (179), Expect = 1.703e-13
Identity = 60/210 (28.57%), Postives = 97/210 (46.19%), Query Frame = 2 
Query:  404 IYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQF-RDVESVNKALDLNGQKLMGVPIQIRT-VSSEKCRAAEGTMNSSYIYF------RGPTKLCV------SNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFGENQGVSMTAADRLG 991
            I++  LS  + T+ L+D F   G++   R+V D +T KS+G  F+ F +  E+      +NGQ L      IRT  ++ K  A +  MN+  + F        PT   V        L   +NE+++++ F+PYG I E+R+ KD      G AF+ F   E A + +  +N+  +  Q +K A   E G  N      G ++      G
Sbjct:   98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAMNGQWLGSR--SIRTNWATRKPPATKADMNAKPLTFDEVYNQSSPTNCTVYCGGINGALSGFLNEEILQKTFSPYGTIQEIRVFKD-----KGYAFVRFSTKEAATHAIVAVNNTEINQQPVKCAWGKESGDPNHMSAIAGGALAQGFPFG 300
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Fly
Match: CG34354 (gene:FBgn0085383 transcript:FBtr0304916)

HSP 1 Score: 73.559 bits (179), Expect = 1.703e-13
Identity = 60/210 (28.57%), Postives = 97/210 (46.19%), Query Frame = 2 
Query:  404 IYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQF-RDVESVNKALDLNGQKLMGVPIQIRT-VSSEKCRAAEGTMNSSYIYF------RGPTKLCV------SNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFGENQGVSMTAADRLG 991
            I++  LS  + T+ L+D F   G++   R+V D +T KS+G  F+ F +  E+      +NGQ L      IRT  ++ K  A +  MN+  + F        PT   V        L   +NE+++++ F+PYG I E+R+ KD      G AF+ F   E A + +  +N+  +  Q +K A   E G  N      G ++      G
Sbjct:   98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAMNGQWLGSR--SIRTNWATRKPPATKADMNAKPLTFDEVYNQSSPTNCTVYCGGINGALSGFLNEEILQKTFSPYGTIQEIRVFKD-----KGYAFVRFSTKEAATHAIVAVNNTEINQQPVKCAWGKESGDPNHMSAIAGGALAQGFPFG 300
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Zebrafish
Match: rbm39a (RNA binding motif protein 39a [Source:ZFIN;Acc:ZDB-GENE-040426-2852])

HSP 1 Score: 281.952 bits (720), Expect = 7.599e-87
Identity = 154/384 (40.10%), Postives = 220/384 (57.29%), Query Frame = 2 
Query:  359 RTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGL--------NEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKA---------------------------------NAVQTP--IINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            + ++ LT EE+DART++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+I+F D  SV  A+ L+GQ+L+GVPI ++   +EK RAA    N+      GP +L V +LH  I E M+  IF P+G+ID ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E            N+  E  G+ +    RL LMA+LA GTGLQ+ P A                                  A+  P   I + CF LSNMF+    ++  +  E+QDDV+ ECN+ GGV H+++D+KS  G +YVKCP+I  A   VS LHGR F G++ITA Y+PL  YH +FP+S+   +L+
Sbjct:  136 QPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRIISDRNSRRSKGIAYIEFVDSTSVPLAIGLSGQRLLGVPIIVQASQAEKNRAA-ALANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVGHVTERTDASTASSFLDNDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSMVAMAAATAAMNPGLSFNINVPTNQALNLPSQPIATHCFQLSNMFNPNSENDHGWEIEIQDDVIEECNKHGGVIHIYVDKKSAEGNVYVKCPTIPAAMAAVSALHGRWFGGKMITAAYVPLPTYHNLFPESVQATQLL 518
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Zebrafish
Match: rbm39a (RNA binding motif protein 39a [Source:ZFIN;Acc:ZDB-GENE-040426-2852])

HSP 1 Score: 281.952 bits (720), Expect = 7.599e-87
Identity = 154/384 (40.10%), Postives = 220/384 (57.29%), Query Frame = 2 
Query:  359 RTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGL--------NEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKA---------------------------------NAVQTP--IINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            + ++ LT EE+DART++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+I+F D  SV  A+ L+GQ+L+GVPI ++   +EK RAA    N+      GP +L V +LH  I E M+  IF P+G+ID ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E            N+  E  G+ +    RL LMA+LA GTGLQ+ P A                                  A+  P   I + CF LSNMF+    ++  +  E+QDDV+ ECN+ GGV H+++D+KS  G +YVKCP+I  A   VS LHGR F G++ITA Y+PL  YH +FP+S+   +L+
Sbjct:  136 QPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRIISDRNSRRSKGIAYIEFVDSTSVPLAIGLSGQRLLGVPIIVQASQAEKNRAA-ALANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVGHVTERTDASTASSFLDNDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSMVAMAAATAAMNPGLSFNINVPTNQALNLPSQPIATHCFQLSNMFNPNSENDHGWEIEIQDDVIEECNKHGGVIHIYVDKKSAEGNVYVKCPTIPAAMAAVSALHGRWFGGKMITAAYVPLPTYHNLFPESVQATQLL 518
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Zebrafish
Match: rbm39a (RNA binding motif protein 39a [Source:ZFIN;Acc:ZDB-GENE-040426-2852])

HSP 1 Score: 281.952 bits (720), Expect = 7.599e-87
Identity = 154/384 (40.10%), Postives = 220/384 (57.29%), Query Frame = 2 
Query:  359 RTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGL--------NEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKA---------------------------------NAVQTP--IINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            + ++ LT EE+DART++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+I+F D  SV  A+ L+GQ+L+GVPI ++   +EK RAA    N+      GP +L V +LH  I E M+  IF P+G+ID ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E            N+  E  G+ +    RL LMA+LA GTGLQ+ P A                                  A+  P   I + CF LSNMF+    ++  +  E+QDDV+ ECN+ GGV H+++D+KS  G +YVKCP+I  A   VS LHGR F G++ITA Y+PL  YH +FP+S+   +L+
Sbjct:  136 QPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRIISDRNSRRSKGIAYIEFVDSTSVPLAIGLSGQRLLGVPIIVQASQAEKNRAA-ALANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVGHVTERTDASTASSFLDNDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSMVAMAAATAAMNPGLSFNINVPTNQALNLPSQPIATHCFQLSNMFNPNSENDHGWEIEIQDDVIEECNKHGGVIHIYVDKKSAEGNVYVKCPTIPAAMAAVSALHGRWFGGKMITAAYVPLPTYHNLFPESVQATQLL 518
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Zebrafish
Match: rbm39a (RNA binding motif protein 39a [Source:ZFIN;Acc:ZDB-GENE-040426-2852])

HSP 1 Score: 281.182 bits (718), Expect = 8.246e-87
Identity = 154/384 (40.10%), Postives = 220/384 (57.29%), Query Frame = 2 
Query:  359 RTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGL--------NEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKA---------------------------------NAVQTP--IINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            + ++ LT EE+DART++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+I+F D  SV  A+ L+GQ+L+GVPI ++   +EK RAA    N+      GP +L V +LH  I E M+  IF P+G+ID ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E            N+  E  G+ +    RL LMA+LA GTGLQ+ P A                                  A+  P   I + CF LSNMF+    ++  +  E+QDDV+ ECN+ GGV H+++D+KS  G +YVKCP+I  A   VS LHGR F G++ITA Y+PL  YH +FP+S+   +L+
Sbjct:  121 QPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRIISDRNSRRSKGIAYIEFVDSTSVPLAIGLSGQRLLGVPIIVQASQAEKNRAA-ALANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVGHVTERTDASTASSFLDNDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSMVAMAAATAAMNPGLSFNINVPTNQALNLPSQPIATHCFQLSNMFNPNSENDHGWEIEIQDDVIEECNKHGGVIHIYVDKKSAEGNVYVKCPTIPAAMAAVSALHGRWFGGKMITAAYVPLPTYHNLFPESVQATQLL 503
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Zebrafish
Match: rbm39b (RNA binding motif protein 39b [Source:ZFIN;Acc:ZDB-GENE-050327-97])

HSP 1 Score: 272.322 bits (695), Expect = 5.645e-83
Identity = 154/402 (38.31%), Postives = 230/402 (57.21%), Query Frame = 2 
Query:  305 NPRKRSVSRGRRQEGSDGRTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYF-RGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGL--------NEFGENQGVSMTAADRLGLMAKLAVGTGLQV------------------VPKANAVQTPIIN---------------SQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLVR 1381
            +P K+  S  ++ +    + ++ L+ EE+DART++  QL+ R+R RDLEDFF  VGK+  VR++ D  + +S+G+A+++F D  SV  A+ L GQ+++GVPI ++   +EK RAA   M S       GP +L V +LH  I E M+  IF P+GKI+ ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E            N+  E  G+ +    RL LMA+LA GTGLQ+                  +P A+A    I N               + C  LSNMF+ +  +E  +  E++DDV+ EC + GGV H+++D+ S +G +YVKCP+I VA   VS+LHGR F G++ITA Y+PL  YH +FPD+ +  +++R
Sbjct:  136 SPFKKDKSPFKKDKSPVRQPIDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRMISDRNSRRSKGIAYVEFVDSTSVPLAIGLTGQRVLGVPIIVQASQAEKNRAA--AMASMLQRGGAGPMRLYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFELAGRPMKVGHVTERSDASSASSFLDNDELERTGIDLGTTGRLQLMARLAEGTGLQIPAAAKQALQMSGSVSFGNMPNASATPPLIPNPGMNQAMNLPTQPLATHCLQLSNMFNPQMENEPGWDIEIRDDVIEECRKHGGVIHIYVDKNSAQGNVYVKCPTIPVAMAVVSSLHGRWFAGKMITAAYVPLPTYHNLFPDAATATEVLR 535
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Xenopus
Match: rbm39 (RNA binding motif protein 39 [Source:NCBI gene;Acc:549542])

HSP 1 Score: 275.789 bits (704), Expect = 3.427e-84
Identity = 156/414 (37.68%), Postives = 230/414 (55.56%), Query Frame = 2 
Query:  311 RKRSVSRGRRQEGSDGRTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFG--------ENQGVSMTAADRLGLMAKLAVGTGLQVVPKANA---------------VQT----------------------------PI------INSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            R +S S  +R++      ++ L+ EE+DART++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+++F D  SV  A+ L GQK++GVPI ++   +EK RAA    N+      GP +L V +LH  I E M+  IF P+G+I+ ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E    +           E  G+ +    RL LMA+LA GTGLQ+ P A                 +QT                            PI      I +QCF LSNMF+ +   E  +  E+++DV+ ECN+ GGV H+++D+ SP+G +YVKCP+I  A   V+ LHGR F G++ITA Y+PL  YH +FPDS++  +L+
Sbjct:  120 RSKSKSPQKREKSPVRGPIDNLSPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDQSSVPLAIGLTGQKVLGVPIIVQASQAEKNRAA-AMANNLQKGTAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASNASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRISQQSEALAAAAASAATISLAAASSTLPIPATTQPIATQCFQLSNMFNPQTEDELGWDSEIKEDVIEECNKHGGVVHIYVDKNSPQGNVYVKCPTIASAIAAVNALHGRWFAGKMITAAYVPLPTYHSLFPDSMTSTQLL 532
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Xenopus
Match: rbm39 (RNA binding motif protein 39 [Source:NCBI gene;Acc:549542])

HSP 1 Score: 264.618 bits (675), Expect = 5.704e-80
Identity = 154/420 (36.67%), Postives = 228/420 (54.29%), Query Frame = 2 
Query:  311 RKRSVSRGRRQEGSDGRTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDV------VRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFG--------ENQGVSMTAADRLGLMAKLAVGTGLQVVPKANA---------------VQT----------------------------PI------INSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            R +S S  +R++      ++ L+ EE+DART++  QL+ R+R RDLE+FF  V    +      VR++ D  + +S+G+A+++F D  SV  A+ L GQK++GVPI ++   +EK RAA    N+      GP +L V +LH  I E M+  IF P+G+I+ ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E    +           E  G+ +    RL LMA+LA GTGLQ+ P A                 +QT                            PI      I +QCF LSNMF+ +   E  +  E+++DV+ ECN+ GGV H+++D+ SP+G +YVKCP+I  A   V+ LHGR F G++ITA Y+PL  YH +FPDS++  +L+
Sbjct:  116 RSKSKSPQKREKSPVRGPIDNLSPEERDARTVFCMQLAARIRPRDLEEFFSTVVFWSLILHVRDVRMISDRNSRRSKGIAYVEFVDQSSVPLAIGLTGQKVLGVPIIVQASQAEKNRAA-AMANNLQKGTAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASNASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRISQQSEALAAAAASAATISLAAASSTLPIPATTQPIATQCFQLSNMFNPQTEDELGWDSEIKEDVIEECNKHGGVVHIYVDKNSPQGNVYVKCPTIASAIAAVNALHGRWFAGKMITAAYVPLPTYHSLFPDSMTSTQLL 534
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Xenopus
Match: RBM23 (RNA binding motif protein 23 [Source:NCBI gene;Acc:100144745])

HSP 1 Score: 178.333 bits (451), Expect = 5.586e-49
Identity = 109/278 (39.21%), Postives = 159/278 (57.19%), Query Frame = 2 
Query:  374 LTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDI-RGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPV---VEEGGLNEF-----GENQGVSMTAADRLGLMAKLAVGTGLQV--------------------------VPKANAVQTPIINSQCFVLSNMFD 1102
            L+ EE+DART++  QL+ R+R+RDLEDFF  VGK+  VR++ D  + +S+G+A+++F D++SV  A+ L GQ+L+GVPI ++   +EK R A    N+      GP +L V +LH  I E M+  IF P+GKI+ ++L+K+   G S G  FI F   E A+  +EQ+N F LAG+ +K+  V   +E GG   F      E  G+ + A  RL LMAKLA GTGLQ+                           P  N  Q+  I++Q F LSN+F+
Sbjct:  143 LSPEERDARTVFCMQLAARIRSRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCDIQSVPLAIGLTGQRLLGVPIIVQVSQAEKNRLA-AMSNNLQRGNPGPMRLYVGSLHFNITEDMLRGIFEPFGKIENIQLLKEPDTGRSKGFGFITFTDAECARRALEQLNGFELAGRPMKVGHVTDHLEGGGEASFLDSDELERTGIDLGATGRLQLMAKLAEGTGLQIPLAAQAALQLGGAIPLTALNPTLTALSPALNLAQS--ISAQSFQLSNLFN 417
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Xenopus
Match: cep112 (centrosomal protein 112kDa [Source:Xenbase;Acc:XB-GENE-6047288])

HSP 1 Score: 78.1814 bits (191), Expect = 2.148e-15
Identity = 53/178 (29.78%), Postives = 90/178 (50.56%), Query Frame = 2 
Query:  341 QEGSDGRTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTS-LGTAFILFRKGENAKNVVEQ 871
            Q G++G  +   ++ E+DA  +++  LS     +DL+D+F + G++    + +D  TG+SRG  FI F+D  SV+K L+    +L G     R +  +K  A    M    I      K+ V  L+P+  E  I E F  +G+I+ + L  D +     G  FI F++ E  K ++E+
Sbjct:   34 QNGAEGDQI-NASKGEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVSDCTIKMDPNTGRSRGFGFILFKDAASVDKVLEQKEHRLDG-----RLIDPKKAMA----MKKDPI-----KKIFVGGLNPEAGEDKIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKILEK 196
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Xenopus
Match: cep112 (centrosomal protein 112kDa [Source:Xenbase;Acc:XB-GENE-6047288])

HSP 1 Score: 77.411 bits (189), Expect = 7.805e-15
Identity = 53/178 (29.78%), Postives = 90/178 (50.56%), Query Frame = 2 
Query:  341 QEGSDGRTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTS-LGTAFILFRKGENAKNVVEQ 871
            Q G++G  +   ++ E+DA  +++  LS     +DL+D+F + G++    + +D  TG+SRG  FI F+D  SV+K L+    +L G     R +  +K  A    M    I      K+ V  L+P+  E  I E F  +G+I+ + L  D +     G  FI F++ E  K ++E+
Sbjct:   34 QNGAEGDQI-NASKGEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVSDCTIKMDPNTGRSRGFGFILFKDAASVDKVLEQKEHRLDG-----RLIDPKKAMA----MKKDPI-----KKIFVGGLNPEAGEDKIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKILEK 196
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Mouse
Match: Rbm39 (RNA binding motif protein 39 [Source:MGI Symbol;Acc:MGI:2157953])

HSP 1 Score: 276.944 bits (707), Expect = 6.042e-85
Identity = 151/379 (39.84%), Postives = 221/379 (58.31%), Query Frame = 2 
Query:  365 VEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFG--------ENQGVSMTAADRLGLMAKLAVGTGLQVVPKANA---------------VQTPI-----------------INSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            ++ LT EE+DART++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+++F DV SV  A+ L GQ+++GVPI ++   +EK RAA    N+      GP +L V +LH  I E M+  IF P+G+I+ ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E    +           E  G+ +    RL LMA+LA GTGLQ+ P A                 +QT +                 + +QCF LSNMF+ +   E  +  E++DDV+ ECN+ GGV H+++D+ S +G +YVKCPSI  A   V+ LHGR F G++ITA Y+PL  YH +FPDS++  +L+
Sbjct:  142 IDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAA-AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLL 519
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Mouse
Match: Rbm39 (RNA binding motif protein 39 [Source:MGI Symbol;Acc:MGI:2157953])

HSP 1 Score: 276.944 bits (707), Expect = 6.042e-85
Identity = 151/379 (39.84%), Postives = 221/379 (58.31%), Query Frame = 2 
Query:  365 VEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFG--------ENQGVSMTAADRLGLMAKLAVGTGLQVVPKANA---------------VQTPI-----------------INSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            ++ LT EE+DART++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+++F DV SV  A+ L GQ+++GVPI ++   +EK RAA    N+      GP +L V +LH  I E M+  IF P+G+I+ ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E    +           E  G+ +    RL LMA+LA GTGLQ+ P A                 +QT +                 + +QCF LSNMF+ +   E  +  E++DDV+ ECN+ GGV H+++D+ S +G +YVKCPSI  A   V+ LHGR F G++ITA Y+PL  YH +FPDS++  +L+
Sbjct:  142 IDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAA-AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLL 519
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Mouse
Match: Rbm39 (RNA binding motif protein 39 [Source:MGI Symbol;Acc:MGI:2157953])

HSP 1 Score: 274.248 bits (700), Expect = 7.414e-84
Identity = 151/385 (39.22%), Postives = 221/385 (57.40%), Query Frame = 2 
Query:  365 VEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFG--------ENQGVSMTAADRLGLMAKLAVGTGLQVVPKANA---------------------VQTPI-----------------INSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            ++ LT EE+DART++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+++F DV SV  A+ L GQ+++GVPI ++   +EK RAA    N+      GP +L V +LH  I E M+  IF P+G+I+ ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E    +           E  G+ +    RL LMA+LA GTGLQ+ P A                       +QT +                 + +QCF LSNMF+ +   E  +  E++DDV+ ECN+ GGV H+++D+ S +G +YVKCPSI  A   V+ LHGR F G++ITA Y+PL  YH +FPDS++  +L+
Sbjct:  142 IDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAA-AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLL 525
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Mouse
Match: Rbm39 (RNA binding motif protein 39 [Source:MGI Symbol;Acc:MGI:2157953])

HSP 1 Score: 186.808 bits (473), Expect = 1.566e-53
Identity = 113/328 (34.45%), Postives = 169/328 (51.52%), Query Frame = 2 
Query:  365 VEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFG--------ENQGVSMTAADRLGLMAKLAVGTGLQVVPKANA---------------------VQTPI-----------------INSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKS 1210
            ++ LT EE+DART++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+++F DV SV  A+ L GQ+++GVPI ++   +EK RAA    N+      GP +L V +LH  I E M+  IF P+G+                     F   E AK  +EQ+N F LAG+ +K+  V E    +           E  G+ +    RL LMA+LA GTGLQ+ P A                       +QT +                 + +QCF LSNMF+ +   E  +  E++DDV+ ECN+ GGV H+++D+ S
Sbjct:    4 IDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAA-AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGR---------------------FSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS 309
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Mouse
Match: Rbm39 (RNA binding motif protein 39 [Source:MGI Symbol;Acc:MGI:2157953])

HSP 1 Score: 178.718 bits (452), Expect = 1.978e-49
Identity = 98/235 (41.70%), Postives = 142/235 (60.43%), Query Frame = 2 
Query:  365 VEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFG--------ENQGVSMTAADRLGLMAKLAVGTGLQVVPKA 1042
            ++ LT EE+DART++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+++F DV SV  A+ L GQ+++GVPI ++   +EK RAA    N+      GP +L V +LH  I E M+  IF P+G+I+ ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E    +           E  G+ +    RL LMA+LA GTGLQ+ P A
Sbjct:  142 IDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAA-AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAA 375
[Close]
BLAST of RNA-binding protein 39 vs. UniProt/SwissProt
Match: sp|Q5RC80|RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii OX=9601 GN=RBM39 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 3.885e-84
Identity = 151/379 (39.84%), Postives = 221/379 (58.31%), Query Frame = 2 
Query:  365 VEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFG--------ENQGVSMTAADRLGLMAKLAVGTGLQVVPKANA---------------VQTPI-----------------INSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            ++ LT EE+DART++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+++F DV SV  A+ L GQ+++GVPI ++   +EK RAA    N+      GP +L V +LH  I E M+  IF P+G+I+ ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E    +           E  G+ +    RL LMA+LA GTGLQ+ P A                 +QT +                 + +QCF LSNMF+ +   E  +  E++DDV+ ECN+ GGV H+++D+ S +G +YVKCPSI  A   V+ LHGR F G++ITA Y+PL  YH +FPDS++  +L+
Sbjct:  142 IDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAA-AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLL 519
[Close]
BLAST of RNA-binding protein 39 vs. UniProt/SwissProt
Match: sp|Q14498|RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39 PE=1 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 3.986e-83
Identity = 151/385 (39.22%), Postives = 221/385 (57.40%), Query Frame = 2 
Query:  365 VEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFG--------ENQGVSMTAADRLGLMAKLAVGTGLQVVPKANA---------------------VQTPI-----------------INSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            ++ LT EE+DART++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+++F DV SV  A+ L GQ+++GVPI ++   +EK RAA    N+      GP +L V +LH  I E M+  IF P+G+I+ ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E    +           E  G+ +    RL LMA+LA GTGLQ+ P A                       +QT +                 + +QCF LSNMF+ +   E  +  E++DDV+ ECN+ GGV H+++D+ S +G +YVKCPSI  A   V+ LHGR F G++ITA Y+PL  YH +FPDS++  +L+
Sbjct:  142 IDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAA-AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLL 525
[Close]
BLAST of RNA-binding protein 39 vs. UniProt/SwissProt
Match: sp|Q8VH51|RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus OX=10090 GN=Rbm39 PE=1 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 5.186e-83
Identity = 151/385 (39.22%), Postives = 221/385 (57.40%), Query Frame = 2 
Query:  365 VEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFG--------ENQGVSMTAADRLGLMAKLAVGTGLQVVPKANA---------------------VQTPI-----------------INSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            ++ LT EE+DART++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+++F DV SV  A+ L GQ+++GVPI ++   +EK RAA    N+      GP +L V +LH  I E M+  IF P+G+I+ ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E    +           E  G+ +    RL LMA+LA GTGLQ+ P A                       +QT +                 + +QCF LSNMF+ +   E  +  E++DDV+ ECN+ GGV H+++D+ S +G +YVKCPSI  A   V+ LHGR F G++ITA Y+PL  YH +FPDS++  +L+
Sbjct:  142 IDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAA-AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLL 525
[Close]
BLAST of RNA-binding protein 39 vs. UniProt/SwissProt
Match: sp|Q86U06|RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens OX=9606 GN=RBM23 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.520e-46
Identity = 107/281 (38.08%), Postives = 157/281 (55.87%), Query Frame = 2 
Query:  365 VEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDI-RGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVE--EGGLN---EFGENQGVSMTAADRLGLMAKLAVGTGLQVV----------------------------PKANAVQTPIIN--SQCFVLSNMF 1099
            V+ L+ EE+DART++  QL+ R+R RDLEDFF  VGK+  VR++ D  + +S+G+A+++F +++SV  A+ L GQ+L+GVPI ++   +EK R A    N+      GP +L V +LH  I E M+  IF P+GKID + LMKD   G S G  FI F   E A+  +EQ+N F LAG+ +++  V E  +GG +     G+ +    +A  R  LMAKLA G G+Q+                             P A    +P +N  SQCF LS++F
Sbjct:  155 VDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLA-AMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQELDLGSAGGRFQLMAKLAEGAGIQLPSTAAAAAAAAAQAAALQLNGAVPLGALNPAALTALSPALNLASQCFQLSSLF 434
[Close]
BLAST of RNA-binding protein 39 vs. UniProt/SwissProt
Match: sp|O13845|RSD1_SCHPO (RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rsd1 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 6.654e-45
Identity = 113/373 (30.29%), Postives = 197/373 (52.82%), Query Frame = 2 
Query:  374 LTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCR-----AAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIA-----------------------------PVVEEGGLN-----EFGENQGVSMTAAD-----RLGLMAKLAVGTGLQVVPKANAVQTPIINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQ-FGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDS 1357
            L+EEE+D RT+++ QL+ R+ +R+L DFF Q G +   ++V D  +G+S+GVA+++F   +SV  A+ L+G++L+G+P+ ++   +EK R     A      S+ I F    +LCVSN+H  + ++ ++ IF P+G I+ + L +D +  S G  +I +R   +A+N +E+MN F+LAG+ +++                              P    GG +     ++ E   +S T  +     R  LM KLA    +    K  +   P I S+C +L NMF+  +     + +E++ DV  EC++ +G V H+ +   +  G+I+VK  +   A K ++ LH R F GR I A+ +P   Y+  FP++
Sbjct:  232 LSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFH---RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDKFTTETTSSMLKRFDETLARQERSQPSQRNGGSSTYESQDYREAAPLSPTEEESRPITRDELMKKLARSEDISDNSKLVSEPEPPIRSRCALLENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAV-VPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKASILPETDYYFKFPNA 600
[Close]
BLAST of RNA-binding protein 39 vs. TrEMBL
Match: A4V6M0 (Rnpc2 protein (Fragment) OS=Dugesia japonica OX=6161 PE=2 SV=1)

HSP 1 Score: 564.688 bits (1454), Expect = 0.000e+0
Identity = 266/275 (96.73%), Postives = 274/275 (99.64%), Query Frame = 2 
Query:  566 KALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKANAVQTPIINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLVRIED 1390
            +ALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIF+PYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKAN+VQ PIINSQCFVLSNMFDVKDAH+DKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGR+ITANYIPLEHYHKMFP+S+SVKKLVR+ED
Sbjct:    4 RALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFSPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKANSVQAPIINSQCFVLSNMFDVKDAHDDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRLITANYIPLEHYHKMFPESVSVKKLVRVED 278
[Close]
BLAST of RNA-binding protein 39 vs. TrEMBL
Match: A0A5J4NDV5 (RNA-binding protein 39 OS=Paragonimus westermani OX=34504 GN=DEA37_0012847 PE=4 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 7.775e-101
Identity = 169/383 (44.13%), Postives = 242/383 (63.19%), Query Frame = 2 
Query:  326 SRGRRQEGSDGRTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRA-AEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKD-IRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGL-------NEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKANAVQ----------------------TPIINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLVR 1381
            S  RRQ+  D      LT EE+DART+++WQLS R+R RDLEDFF  VGK+  VRL++DNKT +S+G+A+++FR+VES   AL L G +L+GVPIQI+   +EK R  A  ++       RGP KL + +LH  I E+M++ IF P+GKI++++L+KD   G S G  F+ +   ++AK  ++Q+N F LAG+ +K+  V E G         N+  +  GV +    RL LMAKLA GTGL+ +PKA   Q                       P + +QCF+LS+MFD   A    F  E++DDV+ EC++FGG  H+ +D+ S +G +YVKCPSI VA +CV+ LHGR F GR+ITA Y+PL +YH++FPDS++ K L++
Sbjct:   94 SSERRQKSPD------LTPEERDARTVFVWQLSARIRQRDLEDFFTSVGKIRDVRLIMDNKTKRSKGIAYVEFREVESAQLALGLTGTRLLGVPIQIQQSHAEKNRMNATPSVPRPVQQNRGPMKLYIGSLHYNITEEMLKGIFEPFGKIEDIKLIKDPATGRSQGYGFVTYGNSDDAKKALDQLNGFELAGRPMKVNHVTERGEYASSSALDNDDADRAGVDLGTTGRLALMAKLAEGTGLE-IPKAALAQLHIAQANPTLGSAGNVSSSSATAPPVCTQCFMLSSMFDPHTATHTIF-NEIRDDVIEECSKFGGCLHIFVDQTSAQGNVYVKCPSIAVATQCVNMLHGRYFSGRLITAAYVPLINYHQLFPDSVTAKTLLQ 468
[Close]
BLAST of RNA-binding protein 39 vs. TrEMBL
Match: A0A183B0F1 (Uncharacterized protein OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS12686 PE=4 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 1.813e-100
Identity = 165/368 (44.84%), Postives = 233/368 (63.32%), Query Frame = 2 
Query:  371 QLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRA-AEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDI-RGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFG-------ENQGVSMTAADRLGLMAKLAVGTGLQVVPKANAVQ----------------------TPIINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLVR 1381
            +LT EE+DART+++WQLS R+R RDLEDFF  VGK+  VRL++DNKT +S+G+A+++FR+VES   AL L G +L+GVPIQI+   +EK R  A   +       RGP KL + +LH  I E+M++ IF P+GKI+E++L+KD+  G S G  F+ +   ++AK  ++Q+N F LAG+ +K+  V E G     G       +  GV +    RL LMAKLA GTGL+ +PKA   Q                       P + +QCF+LSNMFD   A    F  E++DDV+ EC + GG  H+ +D+ S +G +YVKCPSI VA +CV+ LHGR F GR+ITA Y+PL +YH++FPDS + K L++
Sbjct:  102 ELTPEERDARTVFVWQLSARIRQRDLEDFFTSVGKIKDVRLIMDNKTKRSKGIAYVEFREVESAQLALGLTGTRLLGVPIQIQQSHAEKNRVNATPAVPRPAQQNRGPMKLYIGSLHYNITEEMLKGIFEPFGKIEEIKLIKDLTTGRSQGYGFVTYANSDDAKKALDQLNGFELAGRPMKVNHVTERGEYGSLGALDSDEIDRAGVDLGTTGRLSLMAKLAEGTGLE-IPKAALAQLHISQANPALGSAGSVSSSSAIAPPVCTQCFMLSNMFDPHTATHTMF-NEIRDDVIEECTKVGGCLHIFVDQTSAQGNVYVKCPSIAVATQCVNMLHGRYFSGRLITAAYVPLINYHQLFPDSTTAKTLLQ 467
[Close]
BLAST of RNA-binding protein 39 vs. TrEMBL
Match: A0A2H1BVS8 (Putative transcriptional coactivator caper rrm superfamily OS=Fasciola hepatica OX=6192 GN=D915_009475 PE=4 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 2.023e-100
Identity = 167/368 (45.38%), Postives = 234/368 (63.59%), Query Frame = 2 
Query:  371 QLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRA-AEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKD-IRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFG-------ENQGVSMTAADRLGLMAKLAVGTGLQVVPKANAVQ----------------------TPIINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLVR 1381
            +LT EE+DART+++WQLS R+R RDLEDFF  VGK+  VRL++DNKT +S+G+A+++FR+VES   AL L G +L+GVPIQI+   +EK R  A   +       RGP KL + +LH  I E+M++ IF P+GKIDE++L+KD   G S G  F+ +   ++AK  ++Q+N F LAG+ +K+  V E G     G       +  GV +    RL LMAKLA GTGL+ +PKA   Q                       P + +QCF+LSNMFD   A    F  E++DDVV EC++ GG  H+ +D+ S +G +YVKCPSI VA++CV+ LHGR F GR+ITA Y+PL +YH++FPDS + K L++
Sbjct:  106 ELTPEERDARTVFVWQLSARIRQRDLEDFFTSVGKIKDVRLIMDNKTKRSKGIAYVEFREVESAQLALGLTGTRLLGVPIQIQQSHAEKNRVNATPAVPRPAQQNRGPMKLYIGSLHYNITEEMLKGIFEPFGKIDEIKLIKDPTTGRSQGYGFVTYINSDDAKKALDQLNGFELAGRPMKVNHVTERGEYGSLGVLDNDEIDRAGVDLGTTGRLSLMAKLAEGTGLE-IPKAALAQLHISQANPALGSAGSVSSSSATAPPVCTQCFMLSNMFDPHTATHTIF-NEIRDDVVEECSKVGGCLHIFVDQTSAQGNVYVKCPSIAVASQCVNMLHGRYFSGRLITAAYVPLINYHQLFPDSTTAKTLLQ 471
[Close]
BLAST of RNA-binding protein 39 vs. TrEMBL
Match: A0A3R7H994 (RNA-binding protein 39 OS=Clonorchis sinensis OX=79923 GN=RBM39 PE=4 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 4.309e-100
Identity = 165/368 (44.84%), Postives = 235/368 (63.86%), Query Frame = 2 
Query:  371 QLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRA-AEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKD-IRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGL-------NEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKANAVQ----------------------TPIINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLVR 1381
            +LT EE+DART+++WQLS R+R RDLEDFF  VGK+  VRL++DNKT +S+G+A+++FR+VES   AL L G +L+GVPIQI+   +EK R  A  ++       RGP KL + +LH  I E+M++ IF P+GKID+++L+KD   G S G  F+ +   ++AK  ++Q+N F LAG+ +K+  V E G         N+  +  GV +    RL LMAKLA GTGL+ +PKA   Q                       P + +QCF+LSNMFD   A    F  E++DDV+ EC++ GG  H+ +D  S +G +YVKCPSI VA +CV+ LHGR F GR++TA Y+PL +YH++FPDS++ K L+R
Sbjct:  102 ELTPEERDARTVFVWQLSARIRQRDLEDFFTSVGKIRDVRLIMDNKTKRSKGIAYVEFREVESAQLALGLTGTRLLGVPIQIQQSHAEKNRMNAIPSVPKPTQQNRGPMKLYIGSLHYNITEEMLKGIFEPFGKIDDIKLIKDPATGRSQGYGFVTYANSDDAKKALDQLNGFELAGRPMKVNHVTERGEYAALSALDNDDADRAGVDLGTTGRLALMAKLAEGTGLE-IPKAALAQLHIAQNNPALGSASGISSSSAVAPPVCTQCFMLSNMFDPHTATRTIF-NEIRDDVIEECSKVGGCLHLFVDETSAQGNVYVKCPSIAVATQCVNMLHGRYFSGRLVTAAYVPLINYHQLFPDSVTAKTLLR 467
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Cavefish
Match: rbm39b (RNA-binding protein 39-like [Source:NCBI gene;Acc:103037644])

HSP 1 Score: 283.108 bits (723), Expect = 1.259e-87
Identity = 150/378 (39.68%), Postives = 222/378 (58.73%), Query Frame = 2 
Query:  365 VEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGL--------NEFGENQGVSMTAADRLGLMAKLAVGTGLQV------------------VPKANA--VQTPIIN-----------SQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            ++ L+ EE+D+RT++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+++F +  SV  A+ L GQ+L+GVPI ++   +EK RAA    N       GP +L V +LH  I E M+  IF P+G+I+ ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E            N+  E  G+ +    RL LMA+LA GTGLQ+                  +P AN   + +P +N           + C  LSNMF+ +  +E  +  E+QDDV+ ECN+ GG+ H+++DR S +G +YVKCP+I  A   VS LHGR F G++ITA Y+PL  YHK+FPDS++  +L+
Sbjct:  120 IDNLSAEERDSRTVFCMQLAARIRPRDLEEFFSAVGKVRDVRMISDRNSRRSKGIAYVEFVEASSVPLAIGLTGQRLLGVPIIVQASQAEKNRAAAALQNLQK-GGAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFELAGRPMKVGHVTERSDASSASSFLDNDELERTGIDLGTTGRLQLMARLAEGTGLQIPAAAKQALQMTGSLPFGNLPGANPALIPSPSMNQAMNLPTQPLATHCLQLSNMFNPQSENEPGWDTEIQDDVIEECNKHGGIVHIYVDRNSAQGNVYVKCPTIPTAMAAVSALHGRWFAGKMITAAYVPLPTYHKLFPDSVTATQLL 496
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Cavefish
Match: rbm39a (RNA-binding protein 39 [Source:NCBI gene;Acc:103042624])

HSP 1 Score: 283.108 bits (723), Expect = 1.615e-87
Identity = 155/392 (39.54%), Postives = 223/392 (56.89%), Query Frame = 2 
Query:  335 RRQEGSDGRTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGL--------NEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKA---------------------------------NAVQTP--IINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            +R++    + ++ LT EE+DART++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+I+F D  SV  A+ L+GQ+L+GVPI ++   +EK RAA    N+      GP +L V +LH  I E M+  IF P+G+ID ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E            N+  E  G+ +    RL LMA+LA GTGLQ+ P A                                  A+  P   I + CF LSNMFD    ++  +  E+QDDV+ ECN+ GGV H+++D+KS  G +YVKCP+I  A   VS LHGR F G++I A Y+PL  YH +FP+S+   +L+
Sbjct:  119 KREKSPIRQPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRMISDRNSRRSKGIAYIEFVDSTSVPLAIGLSGQRLLGVPIIVQASQAEKNRAA-AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDTETGRSKGYGFITFADAECAKKALEQLNGFELAGRPMKVGHVTERTDASTASSFLDNDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSMVAMAAATAAMNPGLSFNLNMPPNQALNLPSQPIATHCFQLSNMFDPHSENDPGWDIEIQDDVIEECNKHGGVIHIYVDKKSAEGNVYVKCPTIPAAMAAVSALHGRWFGGKMIKAAYVPLPTYHNLFPESVQATQLL 509
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Cavefish
Match: rbm39a (RNA-binding protein 39 [Source:NCBI gene;Acc:103042624])

HSP 1 Score: 282.337 bits (721), Expect = 1.934e-87
Identity = 154/384 (40.10%), Postives = 219/384 (57.03%), Query Frame = 2 
Query:  359 RTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGL--------NEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKA---------------------------------NAVQTP--IINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            + ++ LT EE+DART++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+I+F D  SV  A+ L+GQ+L+GVPI ++   +EK RAA    N+      GP +L V +LH  I E M+  IF P+G+ID ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E            N+  E  G+ +    RL LMA+LA GTGLQ+ P A                                  A+  P   I + CF LSNMFD    ++  +  E+QDDV+ ECN+ GGV H+++D+KS  G +YVKCP+I  A   VS LHGR F G++I A Y+PL  YH +FP+S+   +L+
Sbjct:  105 QPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRMISDRNSRRSKGIAYIEFVDSTSVPLAIGLSGQRLLGVPIIVQASQAEKNRAA-AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDTETGRSKGYGFITFADAECAKKALEQLNGFELAGRPMKVGHVTERTDASTASSFLDNDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSMVAMAAATAAMNPGLSFNLNMPPNQALNLPSQPIATHCFQLSNMFDPHSENDPGWDIEIQDDVIEECNKHGGVIHIYVDKKSAEGNVYVKCPTIPAAMAAVSALHGRWFGGKMIKAAYVPLPTYHNLFPESVQATQLL 487
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Cavefish
Match: rbm39b (RNA-binding protein 39-like [Source:NCBI gene;Acc:103037644])

HSP 1 Score: 283.108 bits (723), Expect = 2.410e-87
Identity = 153/394 (38.83%), Postives = 229/394 (58.12%), Query Frame = 2 
Query:  317 RSVSRGRRQEGSDGRTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGL--------NEFGENQGVSMTAADRLGLMAKLAVGTGLQV------------------VPKANA--VQTPIIN-----------SQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            RS S  ++ +    + ++ L+ EE+D+RT++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+++F +  SV  A+ L GQ+L+GVPI ++   +EK RAA    N       GP +L V +LH  I E M+  IF P+G+I+ ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E            N+  E  G+ +    RL LMA+LA GTGLQ+                  +P AN   + +P +N           + C  LSNMF+ +  +E  +  E+QDDV+ ECN+ GG+ H+++DR S +G +YVKCP+I  A   VS LHGR F G++ITA Y+PL  YHK+FPDS++  +L+
Sbjct:  124 RSKSPFKKDKSPVRQPIDNLSAEERDSRTVFCMQLAARIRPRDLEEFFSAVGKVRDVRMISDRNSRRSKGIAYVEFVEASSVPLAIGLTGQRLLGVPIIVQASQAEKNRAAAALQNLQK-GGAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFELAGRPMKVGHVTERSDASSASSFLDNDELERTGIDLGTTGRLQLMARLAEGTGLQIPAAAKQALQMTGSLPFGNLPGANPALIPSPSMNQAMNLPTQPLATHCLQLSNMFNPQSENEPGWDTEIQDDVIEECNKHGGIVHIYVDRNSAQGNVYVKCPTIPTAMAAVSALHGRWFAGKMITAAYVPLPTYHKLFPDSVTATQLL 516
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Cavefish
Match: rbm39a (RNA-binding protein 39 [Source:NCBI gene;Acc:103042624])

HSP 1 Score: 283.108 bits (723), Expect = 2.575e-87
Identity = 155/392 (39.54%), Postives = 223/392 (56.89%), Query Frame = 2 
Query:  335 RRQEGSDGRTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGL--------NEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKA---------------------------------NAVQTP--IINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            +R++    + ++ LT EE+DART++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+I+F D  SV  A+ L+GQ+L+GVPI ++   +EK RAA    N+      GP +L V +LH  I E M+  IF P+G+ID ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E            N+  E  G+ +    RL LMA+LA GTGLQ+ P A                                  A+  P   I + CF LSNMFD    ++  +  E+QDDV+ ECN+ GGV H+++D+KS  G +YVKCP+I  A   VS LHGR F G++I A Y+PL  YH +FP+S+   +L+
Sbjct:  134 KREKSPIRQPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRMISDRNSRRSKGIAYIEFVDSTSVPLAIGLSGQRLLGVPIIVQASQAEKNRAA-AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDTETGRSKGYGFITFADAECAKKALEQLNGFELAGRPMKVGHVTERTDASTASSFLDNDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSMVAMAAATAAMNPGLSFNLNMPPNQALNLPSQPIATHCFQLSNMFDPHSENDPGWDIEIQDDVIEECNKHGGVIHIYVDKKSAEGNVYVKCPTIPAAMAAVSALHGRWFGGKMIKAAYVPLPTYHNLFPESVQATQLL 524
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Sea Lamprey
Match: RBM39 (RNA binding motif protein 39 [Source:HGNC Symbol;Acc:HGNC:15923])

HSP 1 Score: 276.559 bits (706), Expect = 3.256e-85
Identity = 152/385 (39.48%), Postives = 224/385 (58.18%), Query Frame = 2 
Query:  362 TVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGL---------------NEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKA-NAVQ-----------------------------TPIINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            +   LT EE+D+RT++  QL+ R+R +DLE+FF  VGK+  VRL+ D  + +S+G+A+I+F D++SV  A+ L GQ+L+GVPI ++   +EK RAA     +      GP +L V +LH  I E M+  IF P+GKID ++LM D   G S G  FI F   + AK  +EQ+N F LAG+ +K+  V +   +               N+  E  G+ +T   RL LMAKLA G+GL + P A  A+Q                             +P I +QCF LSNMF+ +      + +E++DDVV ECN+ GGV H+++D+ S  G +YVKCP+I VA   V++LHGR F G++ITA Y+P+  YH +FPDS++  +L+
Sbjct:  162 STSTLTPEERDSRTVFCMQLAARIRAKDLEEFFSAVGKVRDVRLISDRNSRRSKGIAYIEFVDLDSVPLAIGLTGQRLLGVPIIVQASQAEKNRAAAAAAANLQKLASGPMRLYVGSLHFNITEAMLMGIFEPFGKIDNIQLMMDPETGRSKGFGFITFSSADCAKKALEQLNGFELAGRPMKVNYVSDHSDVIISVGSGGGGSSFLDNDELERTGIDLTNTGRLQLMAKLAEGSGLTIPPVAQQALQMNGAIPLEALMPSLAACGPLVAMNPTFTMSPTIATQCFQLSNMFNPQSEVNSSWVQEIRDDVVEECNKHGGVVHIYVDQNSAEGHVYVKCPNIPVALAAVNSLHGRWFAGKMITAAYVPVPTYHNLFPDSMNALQLL 546
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Sea Lamprey
Match: RBM39 (RNA binding motif protein 39 [Source:HGNC Symbol;Acc:HGNC:15923])

HSP 1 Score: 273.092 bits (697), Expect = 3.477e-84
Identity = 153/393 (38.93%), Postives = 226/393 (57.51%), Query Frame = 2 
Query:  308 PRKRSVSRGRRQEGSDGRTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEG-----TMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDI-RGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEG---GLNEFGENQ-----GVSMTAADRLGLMAKLAVGTGLQ----------------------VVPKANAVQTPIINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            PR++S  R           ++ LT EE+DART++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+I+F +V+SV+ A+ L GQ+L+GVPI ++   +EK RAA       TM  S     GP +L V +LH  I E M++ IF P+GKI+  +LM D   G S G  F+ F   E A+  +EQ+N F LAG+ +K+  V E     G + F +N      G+ + +  RL LMAKLA GTGLQ                      V+P  N    P I +QC  LSNMF  +      + ++++DDV+ EC + GG+ H+ +D+ SP+G +YVKC S+  A   V+ LHGR F G++ITA ++P+  YH +FPDS    +L+
Sbjct:  138 PRRKSPIRA---------PIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRMISDRNSRRSKGIAYIEFVEVDSVSLAIGLTGQRLLGVPIIVQASQAEKNRAAAAAAAAATMQKSTA---GPMRLYVGSLHFNITEDMLKGIFEPFGKIENCQLMMDSDTGRSRGYGFVTFADAECARKALEQLNGFELAGRPMKVGHVTERSDGSGASSFLDNDELERTGIDLGSTGRLHLMAKLAEGTGLQIPLAAQQALQMTGGFGLGTTNPVMPVLNNAAPPSIATQCIQLSNMFSPESEQSHTWDQDIRDDVITECMKHGGLVHIFVDKNSPQGNVYVKCSSVASAIATVNALHGRWFAGKMITAAFVPVPTYHNLFPDSTMATQLL 518
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000005194.1 (pep scaffold:Pmarinus_7.0:GL478719:15016:34097:-1 gene:ENSPMAG00000004690.1 transcript:ENSPMAT00000005194.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 82.0333 bits (201), Expect = 9.564e-17
Identity = 35/98 (35.71%), Postives = 58/98 (59.18%), Query Frame = 2 
Query: 1070 SQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSIS 1363
            + C  + NMFD      +K+   + D ++ +C+  GG+ H+ +D+ S  G +YVKC S   A K   +LHG  FDG+++T  Y+ LE YH+ FP +++
Sbjct:  369 TPCLKIRNMFDPDMEIGEKWHLSIHDAIMEKCHDNGGIVHIEVDKTSHEGCVYVKCLSPEHAGKAFKSLHGSWFDGKLVTVKYLWLERYHQRFPHAVT 466
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Sea Lamprey
Match: u2af2a (U2 small nuclear RNA auxiliary factor 2a [Source:ZFIN;Acc:ZDB-GENE-050706-131])

HSP 1 Score: 67.781 bits (164), Expect = 2.672e-12
Identity = 76/345 (22.03%), Postives = 136/345 (39.42%), Query Frame = 2 
Query:  371 QLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVV-----RLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRG----------PTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGT-SLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKANAVQTPIINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRK------SPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYH 1339
            QLT   + AR +Y+  +   V    + DFF    K+  +       VL  +    +  AF++FR V+   +AL  +G    G  +++R       +   G   S  ++             P KL +  L   + +  ++E+   +G +    L+KD     S G AF  +         +  +N   L  + L    +V+   +     N  V +     L +        GL     ++ VQ   + ++   L NM   ++  +D+  +++ +D+  EC ++G V  V I R          G+I+V+  S+    +    L GR F  RV+   Y  LE YH
Sbjct:  132 QLT---RQARRLYVGNIPFGVTEEAMMDFFNNQMKLAGLAQAPGNPVLAVQINLDKNFAFLEFRSVDETTQALAFDGIIFQGQSLKLR--RPHDYQPLPGMSESPALHVPVGVVSTVVQDTPHKLFIGGLPSYLTDDQVKELLTSFGPLKAFNLVKDSATCFSKGYAFCEYADVNVTDQAIAGLNGMQLGDKKL----IVQRASVGAKNANPTVVVQTPVTLQV-------PGL----ASSQVQHSGLPTEVLCLMNMVTPEELVDDEEYEDILEDIREECGKYGSVRSVEIPRPVNGLDIPGCGKIFVEFASLLDCQRAQQALSGRKFANRVVVTQYYNLEKYH 456
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Sea Lamprey
Match: pabpc4 (poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663])

HSP 1 Score: 64.6994 bits (156), Expect = 3.897e-11
Identity = 51/188 (27.13%), Postives = 86/188 (45.74%), Query Frame = 2 
Query:  368 EQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKAL-DLNGQKLMGVPIQIRTVSSEKCRAAE-----GTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIA 913
            +++    K+   +YI      +    L +FF + GK   V  V+ ++ GKSRG  F+ F   E   +A+ ++NG++L G  + +     +  R AE       +    I       L V NL   I+++ + + FAPYG I   ++M +  G S G  F+ F   E A   V +MN   +  + L +A
Sbjct:  184 QEMGARAKEFTNVYIKNFGDDMDEDKLREFFGKFGKALSV-CVMSDECGKSRGFGFVSFEQHEDAQRAVNEMNGKELNGRTVFVGRAQKKGERQAELKRKFEMLKQERISRYQGVNLYVKNLDDNIDDEQLRKEFAPYGTITSTKVMSE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 369

HSP 2 Score: 55.0694 bits (131), Expect = 4.017e-8
Identity = 46/178 (25.84%), Postives = 81/178 (45.51%), Query Frame = 2 
Query:  404 IYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALD-LNGQKLMGVPIQIRTVSSEKCRAA-EGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEG 931
            ++I  L   +  + + D F   G +   ++V D     SRG  F+ F   E+ ++A++ +NG  L     + R V   K R   E  M +    F   T + + N    ++E  + E F  +GK   + +M D  G S G  F+ F + E+A+  V +MN   L G+ + +    ++G
Sbjct:  101 VFIKNLDKSIDNKAMYDTFSAFGNILSCKVVCDENG--SRGYGFVHFETQEAADRAIEKMNGMLLNDRLARRRFVGRFKSRKEREQEMGARAKEF---TNVYIKNFGDDMDEDKLREFFGKFGKALSVCVMSDECGKSRGFGFVSFEQHEDAQRAVNEMNGKELNGRTVFVGRAQKKG 273

HSP 3 Score: 47.3654 bits (111), Expect = 7.936e-6
Identity = 24/72 (33.33%), Postives = 44/72 (61.11%), Query Frame = 2 
Query:  698 LCVSNLHPQINEQMIEEIFAPYGKIDELRLMKD-IRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKI 910
            L V +LHP + E M+ E F+P G +  +R+ +D I   SLG A++ F++  +A+  ++ MN   + G+ ++I
Sbjct:   13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRI 84
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Yeast
Match: PAB1 (Poly(A) binding protein; part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G; stimulates, but is not required for the deadenylation activity of the Pan2p-Pan3p poly(A)-ribonuclease complex [Source:SGD;Acc:S000000967])

HSP 1 Score: 74.7146 bits (182), Expect = 1.834e-14
Identity = 52/190 (27.37%), Postives = 90/190 (47.37%), Query Frame = 2 
Query:  347 GSDGRTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAP 916
            GS+ ++VE        + ++Y+  L   V    L D F  +G +  +R+  D  T  S G A++ F D E+  KA++    +L   PI+ R      CR      + S +  +G   + + NLHP I+ + + + F+ +G I   ++  D  G S G  F+ F +   AK  ++ +N   L GQ + +AP
Sbjct:   27 GSESQSVE------NSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE----QLNYTPIKGRL-----CRIMWSQRDPS-LRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200

HSP 2 Score: 60.077 bits (144), Expect = 6.378e-10
Identity = 47/189 (24.87%), Postives = 81/189 (42.86%), Query Frame = 2 
Query:  371 QLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALD-LNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFR-------GPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIA 913
            QL E +     +Y+  ++        ++ F + G +    L  D   GK +G  F+ +   E   KA++ LN  +L G  + +     +  R     +   Y  +R           L V NL   ++++ +EE FAPYG I   ++M+   G S G  F+ F   E A   + + N   +AG+ L +A
Sbjct:  210 QLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMH--VLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 395
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Yeast
Match: HRB1 (Poly(A+) RNA-binding protein; key surveillance factor for the selective export of spliced mRNAs from the nucleus to the cytoplasm; preference for intron-containing genes; similar to Npl3p; HRB1 has a paralog, GBP2, that arose from the whole genome duplication [Source:SGD;Acc:S000004949])

HSP 1 Score: 57.7658 bits (138), Expect = 3.115e-9
Identity = 41/176 (23.30%), Postives = 82/176 (46.59%), Query Frame = 2 
Query:  395 ARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKAL-DLNGQKLMGVPIQIRTVS---SEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKI 910
            + +I++  L+      DL +FF Q+GK  VVR  +    G  RG+  ++F + + V++A+   +G   M   I +R  +   S   +  +        + R   ++ V NL   +N Q +++IF   G +    +  D  G S G+  + F   ++    +E+ N +++ G +L +
Sbjct:  160 SNSIFVGNLTYDSTPEDLTEFFSQIGK--VVRADIITSRGHHRGMGTVEFTNSDDVDRAIRQYDGAFFMDRKIFVRQDNPPPSNNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIEKYNGYSIEGNVLDV 333
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Yeast
Match: SGN1 (Cytoplasmic RNA-binding protein; contains an RNA recognition motif (RRM); may have a role in mRNA translation, as suggested by genetic interactions with genes encoding proteins involved in translational initiation [Source:SGD;Acc:S000001440])

HSP 1 Score: 52.373 bits (124), Expect = 6.485e-8
Identity = 28/90 (31.11%), Postives = 48/90 (53.33%), Query Frame = 2 
Query:  368 EQLTEEEK-------DARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQI 616
            ++L++EEK       D+R+I++  ++  V    +ED F   G++  + L+ D  TG  +G  +I+F       KAL LNG +L G  I +
Sbjct:   47 QKLSKEEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAV 136
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Yeast
Match: PUB1 (Poly (A)+ RNA-binding protein; abundant mRNP-component protein that binds mRNA and is required for stability of many mRNAs; component of glucose deprivation induced stress granules, involved in P-body-dependent granule assembly; implicated in regulation of translation; carries Q/N-rich domain at C- terminus, identified as candidate prion; human homolog Tia1 is critical for normal synaptic plasticity; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000004961])

HSP 1 Score: 51.6026 bits (122), Expect = 2.294e-7
Identity = 39/177 (22.03%), Postives = 84/177 (47.46%), Query Frame = 2 
Query:  386 EKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALD-LNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKI 910
            E   R +Y+  L   +    L+ +F   G +  +++++D K  K+   AF+++      N AL  LNG+++    ++I      +  +++ T N           L V +L+  ++++ +   F  +       +M D++ G+S G  F+ F   ++A+N ++ M   +L G+ L+I
Sbjct:   71 ETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFN-----------LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 235
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Yeast
Match: NSR1 (Nucleolar protein that binds nuclear localization sequences; required for pre-rRNA processing and ribosome biogenesis; binds to single stranded telomeric DNA and mRNA; methylated by Hmt1p; interaction with Top1p and nucleolar localization are negatively regulated by polyphosphorylation [Source:SGD;Acc:S000003391])

HSP 1 Score: 51.2174 bits (121), Expect = 3.267e-7
Identity = 43/190 (22.63%), Postives = 88/190 (46.32%), Query Frame = 2 
Query:  368 EQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKAL-DLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTK----LCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTSL-GTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPV 919
            +Q  EE ++  TI++ +LS  +    L+  F  +G +   R++ +  T +SRG  ++ F +     KA+ ++ G+++ G PI     +S+      G  + +  +   P++    L + NL    +   I E+FA +G++  +R+          G  ++ F   E+AK  ++      L G+ +   PV
Sbjct:  158 KQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPA----GNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDA-----LQGEYIDNRPV 338
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Nematostella
Match: EDO33926 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SQW0])

HSP 1 Score: 266.159 bits (679), Expect = 4.809e-82
Identity = 146/360 (40.56%), Postives = 216/360 (60.00%), Query Frame = 2 
Query:  368 EQLTEE---EKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCR-AAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGT-SLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFG-------ENQGVSMTAADRLGLMAKLAVG--TGLQVVPKA--------NAVQTPI---INSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKK 1372
            E +TEE   EKD RT++  QL+  +R RDLE+FF +VG++  VR++ D  + +S+G+A+I+F D  +V  A+ L+GQKL+G PI +    +EK R AAE       +   GPT+L V +LH  I E M++ +F P+G +D ++L+ D     S G  F+ FR+ E AK  +EQMN F LAG+ LKI PV E G  + +        E  GV + ++ R  LMAKL+ G   GL V P A         A+ TP+   + + CF+L+NMFD     +  +  +++DDV+ ECN+FG + H+H+D+ SP+G +YVKC +  +A     +LHGR F G+ I A  +PL +YH MFP SIS  +
Sbjct:  106 EPMTEESAEEKDQRTVFCMQLARNIRPRDLEEFFSKVGQVSDVRIISDRNSRRSKGIAYIEFTDKSAVPLAIGLSGQKLLGAPIMVMLTQAEKNRLAAEAERLKQPL---GPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKIGPVTERGDSSAYSFLDDEEYEKGGVELNSSARAALMAKLSQGHSAGLSV-PGAPPIVSGVQQALATPVAVSLPTPCFMLTNMFDPTKERDAGWDLDIRDDVLEECNKFGPIVHIHVDKNSPQGIVYVKCATPDIAISASKSLHGRWFAGKQIIAAPVPLSNYHTMFPQSISATR 461
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Nematostella
Match: EDO48329 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RJT7])

HSP 1 Score: 83.9593 bits (206), Expect = 1.424e-17
Identity = 85/342 (24.85%), Postives = 149/342 (43.57%), Query Frame = 2 
Query:  389 KDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRL-------VLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRG---------PTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKD-IRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKANAVQTPIINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDR------KSPR-GEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHK 1342
            + AR +Y+  +   V    + +FF    KM   +L       V+  +    +  AFI+ R VE   +A+  +G  L G  ++IR    +  +   G   ++ ++  G         P K+ +  L   +NE  ++E+ + +G++    L+KD   G S G AF  +         ++ +N   L  + L I      G        Q ++M  A       +L +  GL +   + AV   +  ++   L NM    +  +D+  +E+ DDV  EC+++G V  + I R      + P  G+I+V+  SI  A K  + L GR F  RV+  +Y P E YH+
Sbjct:    3 RQARRLYVGNIPFGVTENLMIEFFN--AKMKEAKLNTAPGNPVIAAQINTEQNFAFIELRSVEETTQAMAFDGIILQGQALKIR--RPKDYQPIPGMSENASVHVPGVVSTVVPDSPHKIFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGLNGMQLGDKKL-IVQRASVGAKQNLNNPQAMNMVPA-------QLQI-PGLDI---SMAVPGAVAATEVLALMNMVTPDELGDDEEFEEIYDDVREECSKYGRVKSMEIPRPMEGLMEPPGVGKIFVEFSSIDDAKKAAAALGGRKFANRVVVTSYYPPEEYHR 328
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Nematostella
Match: EDO34879 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SN30])

HSP 1 Score: 75.8702 bits (185), Expect = 5.719e-15
Identity = 48/176 (27.27%), Postives = 90/176 (51.14%), Query Frame = 2 
Query:  392 DART-IYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKAL-DLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIA 913
            D RT + I  +   +   D++  F  VG +   +L+ D  TG+S G AF+ + + +  NKA+ ++NG +L     Q +T+     R +   + ++ +Y        +S L   + E+ +E +F P+GKI   +++KD+ G   GT F+ F K   A+  ++ +N+  L G  +K+ 
Sbjct:    7 DERTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARL-----QNKTLKVSFARPSSTEIKNANLY--------ISGLPKDMKEEEVEALFKPFGKIITSKVLKDVSGEGRGTGFVRFDKRCEAQTAIDDLNNKTLPGTNVKLT 169
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Nematostella
Match: EDO41725 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S3H2])

HSP 1 Score: 75.485 bits (184), Expect = 1.048e-14
Identity = 39/114 (34.21%), Postives = 65/114 (57.02%), Query Frame = 2 
Query: 1046 AVQTPIIN-SQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGG-VYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLVR 1381
            AV  PII+ + C  + NMFD +   E+ +   +QD ++ +C+  G  + H+ +D+ S  G +YVKC S   A     +LHG  FDGR++   Y+ L+ YH+ FP ++   + +R
Sbjct:  201 AVNPPIISPTPCLKIRNMFDHEVEMEEGWHVLIQDAILEKCSDAGANIVHIAVDKSSNEGCVYVKCDSHDSAGIAFKSLHGCWFDGRLVAVKYLTLKRYHQRFPVALYATEALR 314
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Nematostella
Match: EDO37342 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SFY3])

HSP 1 Score: 70.8626 bits (172), Expect = 9.088e-13
Identity = 52/202 (25.74%), Postives = 98/202 (48.51%), Query Frame = 2 
Query:  323 VSRGRRQEGSDGRTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKL-----CVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIA 913
            + + R  E +  +   +  EE  D R ++I  L   +    L D F ++G++  VR+V  N  G+S+G A+++F +  +V  AL ++ +K+ G P+ I        +A   T       F+ PT L      VSNL     E  IEE+F+ +G + ++RL+ +  G   G  ++ + +  +A   V  ++   + G+ + +A
Sbjct:  576 IDKVRSSEPAAKKPCGESEEESSDPRKVFISNLLFSITEDHLRDKFSKLGEVLDVRIV-KNMAGRSKGYAYVEFNNESTVQAALAMDREKMEGRPMFISPCVD---KAKNPTT------FKFPTSLDKHTLFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLDKTEVKGRTISVA 767
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Medaka
Match: rbm39b (RNA-binding protein 39 [Source:NCBI gene;Acc:101167788])

HSP 1 Score: 281.567 bits (719), Expect = 3.873e-87
Identity = 157/395 (39.75%), Postives = 230/395 (58.23%), Query Frame = 2 
Query:  311 RKRSVSRG--RRQEGSDGRTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGL--------NEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKAN--------------------------AVQTP--IINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            RKR+ SR   +++     + ++ LT EE+DART++  QL+ R+R RDLEDFF  VGK+  VR++ D  + +S+G+A+I+F +  SV  A+ L GQ+L+GVPI ++   +EK RAA    N       GP +L V +LH  I E+M+  IF P+GKI+ ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E            N+  E  G+ +    RL LMA+LA GTGL++ P A                           A+  P   + + C  LSN+FD +  ++  +  E+QDDV+ ECN+ GGV H+++D+ SP+G +YVKCPSI  A   V+ LHGR F  ++ITA Y+PL  YH +FPDS++ K+L+
Sbjct:  101 RKRTKSRSPPKKERSPVRQPIDNLTPEERDARTVFCMQLAARIRARDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYIEFVETSSVPLAIGLTGQRLLGVPIIVQASQAEKNRAAAAANNLQKGSA-GPMRLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFELAGRPMKVGHVTERSDSSTASSFLDNDELERTGIDLGTTGRLQLMARLAEGTGLKIPPAAQQALQMTGSIPFGNMAAPAIPTPAPSQALNLPSQPLATHCLQLSNLFDPQAENDPAWASEIQDDVIEECNKHGGVVHIYVDKNSPQGNVYVKCPSIPAAMATVNALHGRWFARKMITAAYVPLPTYHNLFPDSVTAKQLL 494
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Medaka
Match: rbm39b (RNA-binding protein 39 [Source:NCBI gene;Acc:101167788])

HSP 1 Score: 281.567 bits (719), Expect = 8.053e-87
Identity = 157/395 (39.75%), Postives = 230/395 (58.23%), Query Frame = 2 
Query:  311 RKRSVSRG--RRQEGSDGRTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGL--------NEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKAN--------------------------AVQTP--IINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            RKR+ SR   +++     + ++ LT EE+DART++  QL+ R+R RDLEDFF  VGK+  VR++ D  + +S+G+A+I+F +  SV  A+ L GQ+L+GVPI ++   +EK RAA    N       GP +L V +LH  I E+M+  IF P+GKI+ ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E            N+  E  G+ +    RL LMA+LA GTGL++ P A                           A+  P   + + C  LSN+FD +  ++  +  E+QDDV+ ECN+ GGV H+++D+ SP+G +YVKCPSI  A   V+ LHGR F  ++ITA Y+PL  YH +FPDS++ K+L+
Sbjct:  119 RKRTKSRSPPKKERSPVRQPIDNLTPEERDARTVFCMQLAARIRARDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYIEFVETSSVPLAIGLTGQRLLGVPIIVQASQAEKNRAAAAANNLQKGSA-GPMRLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFELAGRPMKVGHVTERSDSSTASSFLDNDELERTGIDLGTTGRLQLMARLAEGTGLKIPPAAQQALQMTGSIPFGNMAAPAIPTPAPSQALNLPSQPLATHCLQLSNLFDPQAENDPAWASEIQDDVIEECNKHGGVVHIYVDKNSPQGNVYVKCPSIPAAMATVNALHGRWFARKMITAAYVPLPTYHNLFPDSVTAKQLL 512
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Medaka
Match: ENSORLT00000012445.2 (RNA-binding protein 39 [Source:NCBI gene;Acc:101155103])

HSP 1 Score: 268.855 bits (686), Expect = 3.884e-82
Identity = 149/381 (39.11%), Postives = 216/381 (56.69%), Query Frame = 2 
Query:  368 EQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTM-NSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGL--------NEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKA------------------NAVQTPIIN----------------SQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKLV 1378
            + LT EE+D RT++  QL+ R+R RDLE+FF  VGK+  VR++ D  + +S+G+A+I+F +  SV  A+ L GQ+L+GVPI ++   +EK RAA     N+      GP +L V +LH  I E M+  IF P+G+I+ ++LM D   G S G  FI F   E AK  +EQ+N F LAG+ +K+  V E            N+  E  G+ +    RL LMA+LA GTGLQ+ P A                  +A   P +N                + CF LSNMF+    +   +  ++Q DV+ ECN+ GGV H+++D+ S  G +YVKCPSI  A   V+ LHGR F G++ITA Y+PL  YHK+FP+S++  +L+
Sbjct:  117 DNLTPEERDGRTVFCMQLAARIRPRDLEEFFSAVGKVRDVRMISDRNSRRSKGIAYIEFVEASSVPLAIGLTGQRLLGVPIIVQASQAEKNRAAAAAAANNLQRGLTGPMRLYVGSLHFNITEDMLRGIFEPFGRIENIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVGHVTERTDPSSAPSILDNDELERSGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGAIAIGAMAAVSAAMNPSLNVNMNSGALNLPSQPLATHCFQLSNMFNPSSENTFGWEVDIQRDVIEECNKHGGVVHIYVDKNSAEGNVYVKCPSIPAAMSAVNALHGRFFGGKMITAAYVPLPTYHKLFPESVTATQLL 497
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Medaka
Match: hnrnpaba (heterogeneous nuclear ribonucleoprotein A/B [Source:NCBI gene;Acc:101162934])

HSP 1 Score: 75.8702 bits (185), Expect = 1.683e-14
Identity = 46/163 (28.22%), Postives = 84/163 (51.53%), Query Frame = 2 
Query:  386 EKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTS-LGTAFILFRKGENAKNVVEQ 871
            E+DA  +++  LS     +DL+D+F + G++    + +D +TG+SRG  FI F+D  SV+K L+    +L G  I  +   + K    +              K+ V  L P ++++ IEE F  +G+I+ + L +D +     G  FI +++  + K V+E+
Sbjct:   68 EEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDQQTGRSRGFGFILFKDAASVDKVLEQKEHRLDGRQIDPKRAMAMKKEIVK--------------KIFVGGLKPDLSKEEIEEYFGAFGEIETIELPQDPKTEKRRGFVFITYKEEPSVKKVLEK 216
[Close]
BLAST of RNA-binding protein 39 vs. Ensembl Medaka
Match: hnrnpaba (heterogeneous nuclear ribonucleoprotein A/B [Source:NCBI gene;Acc:101162934])

HSP 1 Score: 75.8702 bits (185), Expect = 2.191e-14
Identity = 46/163 (28.22%), Postives = 84/163 (51.53%), Query Frame = 2 
Query:  386 EKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTS-LGTAFILFRKGENAKNVVEQ 871
            E+DA  +++  LS     +DL+D+F + G++    + +D +TG+SRG  FI F+D  SV+K L+    +L G  I  +   + K    +              K+ V  L P ++++ IEE F  +G+I+ + L +D +     G  FI +++  + K V+E+
Sbjct:   83 EEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDQQTGRSRGFGFILFKDAASVDKVLEQKEHRLDGRQIDPKRAMAMKKEIVK--------------KIFVGGLKPDLSKEEIEEYFGAFGEIETIELPQDPKTEKRRGFVFITYKEEPSVKKVLEK 231
[Close]
BLAST of RNA-binding protein 39 vs. Planmine SMEST
Match: SMESG000003347.1 (SMESG000003347.1)

HSP 1 Score: 764.222 bits (1972), Expect = 0.000e+0
Identity = 439/441 (99.55%), Postives = 440/441 (99.77%), Query Frame = 2 
Query:   26 MTDFEEFEEMLEAPVDRRKAEEIKENKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPRKRSVSRGRRQEGSDGRTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKANAVQTPIINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMF 1348
            MTDFEEFEEMLEAPVDRRKAEEIKENKMSKVSEESSKHKKSSRKRSRSRSIHSSRSKRPEERRRRRSRSKSRSRSKRRRSNSRDRRDRKFREENPRKRSVSRGRRQEGSDGRTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKANAVQTPIINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHK+ 
Sbjct:    1 MTDFEEFEEMLEAPVDRRKAEEIKENKMSKVSEESSKHKKSSRKRSRSRSIHSSRSKRPEERRRRRSRSKSRSRSKRRRSNSRDRRDRKFREENPRKRSVSRGRRQEGSDGRTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKANAVQTPIINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKIL 441
[Close]
BLAST of RNA-binding protein 39 vs. Planmine SMEST
Match: SMESG000066395.1 (SMESG000066395.1)

HSP 1 Score: 121.709 bits (304), Expect = 5.373e-30
Identity = 81/250 (32.40%), Postives = 128/250 (51.20%), Query Frame = 2 
Query:  704 VSNLHPQINEQMIEEIFAPYGKIDELRLMKDIRGT-SLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKI-----APVVEEG--GL--NEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKA-----------NAVQTPIIN--------SQCFVLSNMFDVKDAHEDK------FCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMF 1348
            V  L  +I    ++E F+  G + ++RL+KD R     G A++ F K E+    +       L G  ++I      P + +G  GL  N++ +  GV +    RL LMAKLA GTGL++   A           N   + I+N        S+CFVL NMF+       K      F +E+++DV  ECN+ G +  V ID++ P G +Y KC ++  A +CV+ +HGR F GR++TA++I +  +H+M 
Sbjct:   89 VWQLSKKIRHSDLKEFFSRAGPLKDVRLIKDQRTNRPKGIAYVEFCKVESVTKAL-TFAGSRLLGVPIQINQVMDKPDISDGASGLLDNDYADRGGVGLGNTGRLALMAKLAEGTGLELPKPALEIMKSSLGSQNFAVSDIVNMKRQVPLASECFVLGNMFENPAKSSKKSPLGASFFQELKEDVEEECNRHGKIMSVFIDKRGPGGNVYAKCANVEDAKRCVNVMHGRYFSGRIVTASFITMSTFHQML 337

HSP 2 Score: 95.5153 bits (236), Expect = 4.802e-21
Identity = 51/131 (38.93%), Postives = 83/131 (63.36%), Query Frame = 2 
Query:  311 RKRSVSRG--------RRQEGSDGRTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEK--CRAAEGTMNSSY 673
            RKRS+S+          ++  SD ++V Q  E+++D+RTI++WQLS ++R  DL++FF + G +  VRL+ D +T + +G+A+++F  VESV KAL   G +L+GVPIQI  V  +      A G +++ Y
Sbjct:   49 RKRSISKSPPKINVEPTKKVISDVKSV-QGDEDDQDSRTIFVWQLSKKIRHSDLKEFFSRAGPLKDVRLIKDQRTNRPKGIAYVEFCKVESVTKALTFAGSRLLGVPIQINQVMDKPDISDGASGLLDNDY 178
[Close]
BLAST of RNA-binding protein 39 vs. Planmine SMEST
Match: SMESG000018652.1 (SMESG000018652.1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.122e-16
Identity = 91/342 (26.61%), Postives = 146/342 (42.69%), Query Frame = 2 
Query:  389 KDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVR-----LVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSS--EKCRAAEGTMNSSY---IYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKD-IRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFGENQGVSMTAADRLGLMAKLAVGTG-LQVVPKANAVQTPIIN---SQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRK-------SPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMF 1348
            + AR IY+  L L V    + +FF +  K+  +       ++  +    +  AF++FR VE  N+ L+L+G    G  +++R         +A +G +++S    I    P KL V  L   + E  ++E+   +G +    L+KD   G S G AF      E A + V       L G  L              GE + V   A   LG      + TG L +        T I N   ++   L NM  + D  +D+  +E+ +DV  EC++FG V  V I R        S  G+I+V+  +     K +  L GR+F G+V+  ++  LE Y   F
Sbjct:  155 RQARRIYVGNLPLGVTEEGMMEFFNEQIKLKELTQADGDPIIAVQINTDKNFAFLEFRSVEETNQGLNLDGIVYHGFALKLRRPRDYVPLPQAFDGIVSNSMTAGIVQDTPHKLFVGGLPQYLGEDQVKELLQTFGPLRGFNLVKDSTTGLSKGYAFC-----EYADHSVTDKACMGLTGMQL--------------GEKRIVVQRAC--LGAKNASGIPTGPLMLTQPMMMDPTKISNVEETEVLCLHNMVMIDDLRDDEEYEEIMEDVKEECSKFGTVLSVQIPRPTGADDNVSGVGKIFVEFYNKSETVKAMKALSGRTFSGKVVVTSFYDLEKYRNGF 475
[Close]
BLAST of RNA-binding protein 39 vs. Planmine SMEST
Match: SMESG000018647.1 (SMESG000018647.1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.122e-16
Identity = 91/342 (26.61%), Postives = 146/342 (42.69%), Query Frame = 2 
Query:  389 KDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVR-----LVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSS--EKCRAAEGTMNSSY---IYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKD-IRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVEEGGLNEFGENQGVSMTAADRLGLMAKLAVGTG-LQVVPKANAVQTPIIN---SQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRK-------SPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMF 1348
            + AR IY+  L L V    + +FF +  K+  +       ++  +    +  AF++FR VE  N+ L+L+G    G  +++R         +A +G +++S    I    P KL V  L   + E  ++E+   +G +    L+KD   G S G AF      E A + V       L G  L              GE + V   A   LG      + TG L +        T I N   ++   L NM  + D  +D+  +E+ +DV  EC++FG V  V I R        S  G+I+V+  +     K +  L GR+F G+V+  ++  LE Y   F
Sbjct:  155 RQARRIYVGNLPLGVTEEGMMEFFNEQIKLKELTQADGDPIIAVQINTDKNFAFLEFRSVEETNQGLNLDGIVYHGFALKLRRPRDYVPLPQAFDGIVSNSMTAGIVQDTPHKLFVGGLPQYLGEDQVKELLQTFGPLRGFNLVKDSTTGLSKGYAFC-----EYADHSVTDKACMGLTGMQL--------------GEKRIVVQRAC--LGAKNASGIPTGPLMLTQPMMMDPTKISNVEETEVLCLHNMVMIDDLRDDEEYEEIMEDVKEECSKFGTVLSVQIPRPTGADDNVSGVGKIFVEFYNKSETVKAMKALSGRTFSGKVVVTSFYDLEKYRNGF 475
[Close]
BLAST of RNA-binding protein 39 vs. Planmine SMEST
Match: SMESG000078029.1 (SMESG000078029.1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.401e-16
Identity = 82/342 (23.98%), Postives = 148/342 (43.27%), Query Frame = 2 
Query:  389 KDARTIYIWQLSLRVRTRDLEDFFVQVGKMDVVR-----LVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTVSSEKCRAAEGTMNS-------SYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKIDELRLMKDIR-GTSLGTAFILFRKGENAKNVVEQMNDFNLAG-QLLKIAPVVEEGGLNEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKANAVQTPIINSQCFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHI--------DRKSPRGEIYVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMF 1348
            + AR IY+  + L V  + + DFF +  K+ +        ++  +    +  AF++FR VE  ++ L+L+G    G P+++R            TM++       + +    P KL +  L   +NE  ++E+   +G +    L+KD   G S G AF      E A + V       L G QL +   VV+   L    +N   + T A  +    +L +   +    +          ++   L NM   ++  +D+  +E+ +DV  EC+++G V  + I        D ++  G+IYV+  +     K +  L GR+F GRV+  ++   E Y   F
Sbjct:  176 RQARRIYVGNIPLGVTEQGMMDFFNEQMKLKLFTQADGDPIIAVQINTDKNFAFLEFRSVEETSQGLNLDGIMYNGFPLKLR--RPRDYVPLPTTMDTMLPNSLAAGVVQDTPHKLFIGGLPHYLNEDQVKELLLTFGPLSGFNLVKDSSTGLSKGYAFC-----EYADHSVTDKACLGLTGMQLGEKRIVVQRASLG--AKNPTTAATTALLIARQQQLGMDPSMGTCGQ---------ETEILCLHNMITPEELTDDEEYEEIVEDVKEECSKYGSVNSLQIPRPTGSEEDSRNGVGKIYVEFSNKSETVKAMKALAGRTFSGRVVVTSFYDPERYRNGF 499
The following BLAST results are available for this feature:
BLAST of RNA-binding protein 39 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RBM398.089e-8539.84RNA binding motif protein 39 [Source:HGNC Symbol;A... [more]
RBM394.355e-8439.22RNA binding motif protein 39 [Source:HGNC Symbol;A... [more]
RBM398.300e-8439.22RNA binding motif protein 39 [Source:HGNC Symbol;A... [more]
RBM397.422e-6135.57RNA binding motif protein 39 [Source:HGNC Symbol;A... [more]
RBM395.057e-4941.70RNA binding motif protein 39 [Source:HGNC Symbol;A... [more]
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BLAST of RNA-binding protein 39 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbm-391.957e-9241.39RNA Binding Motif protein homolog [Source:UniProt... [more]
rbm-391.957e-9241.39RNA Binding Motif protein homolog [Source:UniProt... [more]
rbm-391.957e-9241.39RNA Binding Motif protein homolog [Source:UniProt... [more]
rbm-396.900e-9141.39RNA Binding Motif protein homolog [Source:UniProt... [more]
sap-493.292e-1329.33Splicing factor 3B subunit 4 [Source:UniProtKB/Sw... [more]
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BLAST of RNA-binding protein 39 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Caper3.215e-9143.16gene:FBgn0031883 transcript:FBtr0089640[more]
Caper3.215e-9143.16gene:FBgn0031883 transcript:FBtr0089636[more]
U2af501.523e-1322.19gene:FBgn0005411 transcript:FBtr0307177[more]
CG343541.703e-1328.57gene:FBgn0085383 transcript:FBtr0304917[more]
CG343541.703e-1328.57gene:FBgn0085383 transcript:FBtr0304916[more]
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BLAST of RNA-binding protein 39 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbm39a7.599e-8740.10RNA binding motif protein 39a [Source:ZFIN;Acc:ZDB... [more]
rbm39a7.599e-8740.10RNA binding motif protein 39a [Source:ZFIN;Acc:ZDB... [more]
rbm39a7.599e-8740.10RNA binding motif protein 39a [Source:ZFIN;Acc:ZDB... [more]
rbm39a8.246e-8740.10RNA binding motif protein 39a [Source:ZFIN;Acc:ZDB... [more]
rbm39b5.645e-8338.31RNA binding motif protein 39b [Source:ZFIN;Acc:ZDB... [more]
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BLAST of RNA-binding protein 39 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbm393.427e-8437.68RNA binding motif protein 39 [Source:NCBI gene;Acc... [more]
rbm395.704e-8036.67RNA binding motif protein 39 [Source:NCBI gene;Acc... [more]
RBM235.586e-4939.21RNA binding motif protein 23 [Source:NCBI gene;Acc... [more]
cep1122.148e-1529.78centrosomal protein 112kDa [Source:Xenbase;Acc:XB-... [more]
cep1127.805e-1529.78centrosomal protein 112kDa [Source:Xenbase;Acc:XB-... [more]
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BLAST of RNA-binding protein 39 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rbm396.042e-8539.84RNA binding motif protein 39 [Source:MGI Symbol;Ac... [more]
Rbm396.042e-8539.84RNA binding motif protein 39 [Source:MGI Symbol;Ac... [more]
Rbm397.414e-8439.22RNA binding motif protein 39 [Source:MGI Symbol;Ac... [more]
Rbm391.566e-5334.45RNA binding motif protein 39 [Source:MGI Symbol;Ac... [more]
Rbm391.978e-4941.70RNA binding motif protein 39 [Source:MGI Symbol;Ac... [more]
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BLAST of RNA-binding protein 39 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q5RC80|RBM39_PONAB3.885e-8439.84RNA-binding protein 39 OS=Pongo abelii OX=9601 GN=... [more]
sp|Q14498|RBM39_HUMAN3.986e-8339.22RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=... [more]
sp|Q8VH51|RBM39_MOUSE5.186e-8339.22RNA-binding protein 39 OS=Mus musculus OX=10090 GN... [more]
sp|Q86U06|RBM23_HUMAN1.520e-4638.08Probable RNA-binding protein 23 OS=Homo sapiens OX... [more]
sp|O13845|RSD1_SCHPO6.654e-4530.29RNA-binding protein rsd1 OS=Schizosaccharomyces po... [more]
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BLAST of RNA-binding protein 39 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A4V6M00.000e+096.73Rnpc2 protein (Fragment) OS=Dugesia japonica OX=61... [more]
A0A5J4NDV57.775e-10144.13RNA-binding protein 39 OS=Paragonimus westermani O... [more]
A0A183B0F11.813e-10044.84Uncharacterized protein OS=Echinostoma caproni OX=... [more]
A0A2H1BVS82.023e-10045.38Putative transcriptional coactivator caper rrm sup... [more]
A0A3R7H9944.309e-10044.84RNA-binding protein 39 OS=Clonorchis sinensis OX=7... [more]
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BLAST of RNA-binding protein 39 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbm39b1.259e-8739.68RNA-binding protein 39-like [Source:NCBI gene;Acc:... [more]
rbm39a1.615e-8739.54RNA-binding protein 39 [Source:NCBI gene;Acc:10304... [more]
rbm39a1.934e-8740.10RNA-binding protein 39 [Source:NCBI gene;Acc:10304... [more]
rbm39b2.410e-8738.83RNA-binding protein 39-like [Source:NCBI gene;Acc:... [more]
rbm39a2.575e-8739.54RNA-binding protein 39 [Source:NCBI gene;Acc:10304... [more]
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BLAST of RNA-binding protein 39 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RBM393.256e-8539.48RNA binding motif protein 39 [Source:HGNC Symbol;A... [more]
RBM393.477e-8438.93RNA binding motif protein 39 [Source:HGNC Symbol;A... [more]
ENSPMAT00000005194.19.564e-1735.71pep scaffold:Pmarinus_7.0:GL478719:15016:34097:-1 ... [more]
u2af2a2.672e-1222.03U2 small nuclear RNA auxiliary factor 2a [Source:Z... [more]
pabpc43.897e-1127.13poly(A) binding protein, cytoplasmic 4 (inducible ... [more]
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BLAST of RNA-binding protein 39 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 5
Match NameE-valueIdentityDescription
PAB11.834e-1427.37Poly(A) binding protein; part of the 3'-end RNA-pr... [more]
HRB13.115e-923.30Poly(A+) RNA-binding protein; key surveillance fac... [more]
SGN16.485e-831.11Cytoplasmic RNA-binding protein; contains an RNA r... [more]
PUB12.294e-722.03Poly (A)+ RNA-binding protein; abundant mRNP-compo... [more]
NSR13.267e-722.63Nucleolar protein that binds nuclear localization ... [more]
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BLAST of RNA-binding protein 39 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO339264.809e-8240.56Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO483291.424e-1724.85Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO348795.719e-1527.27Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO417251.048e-1434.21Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO373429.088e-1325.74Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of RNA-binding protein 39 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbm39b3.873e-8739.75RNA-binding protein 39 [Source:NCBI gene;Acc:10116... [more]
rbm39b8.053e-8739.75RNA-binding protein 39 [Source:NCBI gene;Acc:10116... [more]
ENSORLT00000012445.23.884e-8239.11RNA-binding protein 39 [Source:NCBI gene;Acc:10115... [more]
hnrnpaba1.683e-1428.22heterogeneous nuclear ribonucleoprotein A/B [Sourc... [more]
hnrnpaba2.191e-1428.22heterogeneous nuclear ribonucleoprotein A/B [Sourc... [more]
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BLAST of RNA-binding protein 39 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000003347.10.000e+099.55SMESG000003347.1[more]
SMESG000066395.15.373e-3032.40SMESG000066395.1[more]
SMESG000018652.11.122e-1626.61SMESG000018652.1[more]
SMESG000018647.11.122e-1626.61SMESG000018647.1[more]
SMESG000078029.13.401e-1623.98SMESG000078029.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30018877 ID=SMED30018877|Name=RNA-binding protein 39|organism=Schmidtea mediterranea sexual|type=transcript|length=1940bp
CAATACTATAAGCCATTAAGATAATATGACTGATTTTGAAGAGTTTGAGG
AGATGCTGGAAGCTCCAGTTGATAGAAGAAAAGCTGAAGAAATTAAAGAG
AATAAAATGAGTAAAGTATCTGAAGAATCAAGTAAACACAAAAAATCAAG
CCGTAAAAGAAGCCGATCTAGAAGCATACATAGTTCGAGATCTAAGAGAC
CCGAGGAAAGACGAAGAAGGCGATCTCGTAGCAAATCAAGATCTAGAAGT
AAGCGTCGACGTTCCAATAGCCGAGATAGACGGGACCGAAAATTTAGAGA
AGAAAATCCACGTAAAAGATCTGTATCAAGAGGCCGTCGTCAAGAAGGTT
CTGATGGCCGAACAGTTGAGCAATTAACAGAGGAAGAAAAAGATGCTCGA
ACTATATATATTTGGCAGTTGTCCTTGCGAGTTAGAACTCGAGATTTAGA
AGACTTTTTTGTTCAGGTTGGAAAGATGGACGTTGTTAGATTGGTACTTG
ACAATAAAACCGGTAAATCTAGAGGGGTAGCTTTTATTCAATTTAGGGAT
GTAGAATCGGTTAATAAAGCTTTAGATTTAAACGGCCAAAAACTTATGGG
TGTCCCTATACAGATTCGAACAGTGTCGTCGGAAAAATGTCGTGCTGCAG
AGGGAACTATGAATAGTAGCTATATCTACTTTAGGGGGCCTACTAAGTTG
TGCGTATCAAATCTTCACCCCCAAATTAATGAGCAAATGATTGAAGAAAT
TTTTGCTCCTTATGGTAAAATTGATGAACTTCGGCTAATGAAAGATATAC
GTGGGACATCTTTAGGCACAGCTTTTATTTTGTTTAGAAAAGGCGAAAAT
GCTAAAAATGTCGTAGAACAAATGAATGATTTTAATTTAGCTGGACAATT
ATTGAAAATAGCCCCAGTGGTTGAAGAAGGAGGACTAAATGAATTTGGTG
AAAACCAAGGTGTTTCTATGACTGCTGCTGATCGATTGGGTTTGATGGCT
AAATTAGCAGTTGGAACAGGATTACAAGTTGTGCCTAAAGCTAATGCTGT
GCAAACTCCAATTATTAATTCACAATGTTTTGTATTGTCTAATATGTTTG
ATGTGAAAGATGCTCACGAGGATAAGTTTTGTAAAGAAGTTCAAGATGAT
GTAGTTGGAGAATGTAATCAATTCGGTGGGGTTTACCATGTTCATATTGA
TAGAAAATCTCCAAGAGGTGAAATTTATGTGAAATGTCCAAGTATCTATG
TAGCTAATAAGTGTGTAAGTACTCTTCATGGACGATCATTTGATGGAAGA
GTGATAACTGCAAATTATATACCACTAGAGCACTACCATAAAATGTTTCC
TGATTCGATTTCGGTGAAGAAACTTGTTAGAATTGAAGATTGATTGCAAA
TAATAGTTTATTTATAGACATTTTTGTATAAAATATAATCATTGAAAACA
TTTTAGATCATCCATTTTTCAATTATTAATGTTGATAGGTAATTATTGAT
CGGGTCAAGAGTAAAAGTGAAAATTTTAACTTAATGTTTTGTTATTTTTT
CGAAACTTTAGATAATGCTTCTAATGTGCGAATCAGTTGAAAAGTCGGAA
TAGAGTTCCGATATTTTAATTTTACTATCATAATGAAACGTCGATAATTT
CAGAAAACCAAACTACTAATTATTTGGTCCAAGAAGTATTGTGTTAACAA
AAGAGATTGTTGGATCACTCTATCTCAACATTGTAAACACATAATCAAAT
AAAGGATGTGTCAAAATGCAGGTTGCATAGTGAAACGTTAAACACGAGAT
TTACATATAGTCACCTTTTGTATTTATTTAAATTTAACTTTTTTCGTATT
AGAAATGTAATGAAATGATGGATAATCTTAAACATTTAGTCAGTGCGTTG
CGGAGAATGTTGATAATCATAAAATAATAGCGTTCGATAG
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protein sequence of SMED30018877-orf-1

>SMED30018877-orf-1 ID=SMED30018877-orf-1|Name=SMED30018877-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=456bp
MTDFEEFEEMLEAPVDRRKAEEIKENKMSKVSEESSKHKKSSRKRSRSRS
IHSSRSKRPEERRRRRSRSKSRSRSKRRRSNSRDRRDRKFREENPRKRSV
SRGRRQEGSDGRTVEQLTEEEKDARTIYIWQLSLRVRTRDLEDFFVQVGK
MDVVRLVLDNKTGKSRGVAFIQFRDVESVNKALDLNGQKLMGVPIQIRTV
SSEKCRAAEGTMNSSYIYFRGPTKLCVSNLHPQINEQMIEEIFAPYGKID
ELRLMKDIRGTSLGTAFILFRKGENAKNVVEQMNDFNLAGQLLKIAPVVE
EGGLNEFGENQGVSMTAADRLGLMAKLAVGTGLQVVPKANAVQTPIINSQ
CFVLSNMFDVKDAHEDKFCKEVQDDVVGECNQFGGVYHVHIDRKSPRGEI
YVKCPSIYVANKCVSTLHGRSFDGRVITANYIPLEHYHKMFPDSISVKKL
VRIED*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000103central nervous system
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR029123RBM39_linker
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0003723RNA binding
Vocabulary: cellular component
TermDefinition
GO:0005634nucleus
Vocabulary: biological process
TermDefinition
GO:0006397mRNA processing
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 351..430
e-value: 0.16
score: 13.7
coord: 224..296
e-value: 3.3E-16
score: 69.9
coord: 126..198
e-value: 4.8E-15
score: 66.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 225..293
e-value: 2.8E-14
score: 52.7
coord: 127..195
e-value: 6.9E-14
score: 51.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 223..300
score: 15.102
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 125..202
score: 16.483
IPR029123Splicing factor RBM39, linkerPFAMPF15519RBM39linkercoord: 309..364
e-value: 7.6E-7
score: 30.1
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 345..454
e-value: 1.5E-27
score: 97.7
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 220..306
e-value: 2.4E-17
score: 65.1
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 64..211
e-value: 1.1E-24
score: 89.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..84
NoneNo IPR availablePANTHERPTHR23139RNA-BINDING PROTEINcoord: 17..443
NoneNo IPR availablePANTHERPTHR23139:SF101RNA-BINDING PROTEIN 39coord: 17..443
NoneNo IPR availableCDDcd12285RRM3_RBM39_likecoord: 349..433
e-value: 2.9355E-33
score: 118.416
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 346..436
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 214..301
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 65..198