SMED30018834

Overview


Name	SMED30018834
Smed ID	SMED30018834
Length (bp)	731

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SMED30018834 (SMED30018834) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30018834 (SMED30018834) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30018834 (SMED30018834) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30018834 (SMED30018834) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30018834

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 12

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30018834	SMESG000010762.1	SmedASXL_008112	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
pharynx	SMED30018834	SMESG000010762.1	dd_Smed_v4_3061_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30018834	SMESG000010762.1	dd_Smed_v4_3061_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30018834	SMESG000010762.1	dd_Smed_v4_3061_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30018834	SMESG000010762.1	dd_Smed_v4_3061_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30018834	SMESG000010762.1	dd_Smed_v4_3061_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30018834	SMESG000010762.1	dd_Smed_v4_3061_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30018834	SMESG000010762.1	dd_Smed_v4_3061_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30018834	SMESG000010762.1	dd_Smed_v4_3061_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018834	SMESG000010762.1	Contig44395	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018834	SMESG000010762.1	Contig44395	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
neoblast	SMED30018834	SMESG000010762.1	dd_Smed_v6_3061_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018

Note: Hover over icons to view figure legend

Alignments

SMED30018834 aligns in the following genomic locations:


Alignment Location	Alignment Score
v31.000167:179445..180203 -	3587

Homology

[Close]

BLAST of SMED30018834 vs. Ensembl Human
Match: RANBP2 (RAN binding protein 2 [Source:HGNC Symbol;Acc:HGNC:9848])

HSP 1 Score: 76.6406 bits (187), Expect = 2.404e-15
Identity = 41/90 (45.56%), Postives = 59/90 (65.56%), Query Frame = -3

Query:  331 SDDENIETER-DFAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 591
            SD+E +  E   F P+V+LP V  ++  ED E++F++    Y +D  V  ++WKERGVG ++IL    K  YRILMRR+QV KVC NH++
Sbjct: 2900 SDEEVVHNEDIHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRDV--SQWKERGVGDIKILWHTMKNYYRILMRRDQVFKVCANHVI 2987

HSP 2 Score: 73.559 bits (179), Expect = 4.669e-15
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = -3

Query:  331 DDENIETERD----FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 588
            DD+  +TE      F PVV +P    LV  E ED +V++ + V  + +D  V  ++WKERG+G L+ILK    G+ R+LMRR QV KVC NH +
Sbjct: 1999 DDDAYKTEDSDDIHFEPVVQMPEKVELVTGE-EDEKVLYSQRVKLFRFDAEV--SQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWI 2089

HSP 3 Score: 26.5646 bits (57), Expect = 4.669e-15
Identity = 19/51 (37.25%), Postives = 24/51 (47.06%), Query Frame = -1

Query:  183 WFIITFEL*IIRKKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEFCQ 335
            W   T  L  +   +   +W  A D+SD   +    AAKF T E AEEF Q
Sbjct: 2088 WITTTMNLKPLSGSDRAWMWL-ASDFSDGDAKLEQLAAKFKTPELAEEFKQ 2137

HSP 4 Score: 68.9366 bits (167), Expect = 1.078e-12
Identity = 47/133 (35.34%), Postives = 66/133 (49.62%), Query Frame = -3

Query:  331 NLIYFNRNCLN-NFYFISHFYQLSWIIKINMS---------DDENIETERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 681
            NL  F  +    NF F S         K+N S          D   E ERD   F PVV LP ++  +   E+ +V+F      Y YD  V   +WKERG+G ++IL+  +  + RI+MRR+QV K+C NH +
Sbjct: 2256 NLFRFGESTTGFNFSFKSALSPSKSPAKLNQSGTSVGTDEESDVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDV--GQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRI 2386

HSP 5 Score: 65.4698 bits (158), Expect = 1.344e-11
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = -3

Query:  331 FAPVVNLP---LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 558
            F PVV LP    V    ED E  F      + +D  V   EWKERG+G ++IL+    G+ R+LMRR QV K+C NH +
Sbjct: 1172 FEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFD--VESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYI 1248

[Close]

BLAST of SMED30018834 vs. Ensembl Human
Match: RGPD4 (RANBP2 like and GRIP domain containing 4 [Source:HGNC Symbol;Acc:HGNC:32417])

HSP 1 Score: 69.707 bits (169), Expect = 3.499e-14
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = -3

Query:  331 DDENIETERD----FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 588
            DD+  +TE      F PVV +P    LVI E E  +V++ + V  + +D  V   +WKERG+G L+ILK    G+ R+LMRR QV KVC NH +
Sbjct: 1024 DDDAYKTEDSDDIHFEPVVQMPEKVELVIGE-EGEKVLYSQGVKLFRFDAEV--RQWKERGLGNLKILKNEVNGKPRMLMRREQVLKVCANHWI 1114

HSP 2 Score: 27.335 bits (59), Expect = 3.499e-14
Identity = 19/51 (37.25%), Postives = 25/51 (49.02%), Query Frame = -1

Query:  183 WFIITFEL*IIRKKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEFCQ 335
            W   T  L  +   +   +W +A D+SD   +    AAKF T E AEEF Q
Sbjct: 1113 WITTTMNLKPLSGSDRAWMW-SASDFSDGDAKLERLAAKFKTPELAEEFKQ 1162

HSP 3 Score: 70.0922 bits (170), Expect = 4.565e-13
Identity = 47/133 (35.34%), Postives = 68/133 (51.13%), Query Frame = -3

Query:  331 NLIYFNRNCL-NNFYFISHFYQLSWIIKINMS---------DDENIETERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 681
            NL +F  +   +NF F S         K+N S          D   E ERD   F PVV LP ++  +   E+ +V+F      Y YD  V   +WKERG+G ++IL+  +  + RI+MRR+QV K+C NH +
Sbjct: 1281 NLFHFGESTTGSNFSFKSALSPSKSPAKLNQSGTSVGTDEESDVTQEEERDGQYFEPVVPLPDLVEVSSGEENEKVVFSHRAELYRYDKDV--GQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHTI 1411

[Close]

BLAST of SMED30018834 vs. Ensembl Human
Match: RGPD8 (RANBP2 like and GRIP domain containing 8 [Source:HGNC Symbol;Acc:HGNC:9849])

HSP 1 Score: 67.781 bits (164), Expect = 7.865e-14
Identity = 40/94 (42.55%), Postives = 55/94 (58.51%), Query Frame = -3

Query:  331 DDENIETERD----FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 588
            DD+  +TE      F PVV +P    LV  E E  +V++ + V  + +D  V   +WKERG+G L+ILK    G+ R+LMRR QV KVC NH +
Sbjct:  883 DDDAYKTEDSDDIHFEPVVQMPEKVELVTGE-EGEKVLYSQGVKLFRFDAEV--RQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWI 973

HSP 2 Score: 28.1054 bits (61), Expect = 7.865e-14
Identity = 19/51 (37.25%), Postives = 25/51 (49.02%), Query Frame = -1

Query:  183 WFIITFEL*IIRKKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEFCQ 335
            W   T  L  +   +   +W +A D+SD   +    AAKF T E AEEF Q
Sbjct:  972 WITTTMNLKPLSGSDRAWMW-SASDFSDGDAKLERLAAKFKTPELAEEFKQ 1021

HSP 3 Score: 70.0922 bits (170), Expect = 3.483e-13
Identity = 48/133 (36.09%), Postives = 72/133 (54.14%), Query Frame = -3

Query:  331 NLIYFNRNCL-NNFYFISHFYQLSWIIKINMS------DDENI---ETERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 681
            NL  F+ +   +NF F S         K+N S      D+E++   E ERD   F PVV LP ++  +   E+ +V+F      Y YD  V   +WKERG+G ++IL+  +  + RI+MRR+QV K+C NH +
Sbjct: 1140 NLFRFDESTTGSNFSFKSALSLSKSPAKLNQSGTSVGTDEESVVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRYDKDV--GQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRI 1270

[Close]

BLAST of SMED30018834 vs. Ensembl Human
Match: RGPD6 (RANBP2 like and GRIP domain containing 6 [Source:HGNC Symbol;Acc:HGNC:32419])

HSP 1 Score: 68.1662 bits (165), Expect = 1.019e-13
Identity = 40/94 (42.55%), Postives = 55/94 (58.51%), Query Frame = -3

Query:  331 DDENIETERD----FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 588
            DD+  +TE      F PVV +P    LV  E E  +V++ + V  + +D  V   +WKERG+G L+ILK    G+ R+LMRR QV KVC NH +
Sbjct: 1023 DDDAYKTEDSDDIHFEPVVQMPEKVELVTGE-EGEKVLYSQGVKLFRFDAEV--RQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWI 1113

HSP 2 Score: 27.335 bits (59), Expect = 1.019e-13
Identity = 19/51 (37.25%), Postives = 25/51 (49.02%), Query Frame = -1

Query:  183 WFIITFEL*IIRKKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEFCQ 335
            W   T  L  +   +   +W +A D+SD   +    AAKF T E AEEF Q
Sbjct: 1112 WITTTMNLKPLSGSDRAWMW-SASDFSDGDAKLERLAAKFKTPELAEEFKQ 1161

HSP 3 Score: 70.4774 bits (171), Expect = 2.940e-13
Identity = 48/133 (36.09%), Postives = 72/133 (54.14%), Query Frame = -3

Query:  331 NLIYFNRNCL-NNFYFISHFYQLSWIIKINMS------DDENI---ETERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 681
            NL  F+ +   +NF F S         K+N S      D+E++   E ERD   F PVV LP ++  +   E+ +V+F      Y YD  V   +WKERG+G ++IL+  +  + RI+MRR+QV K+C NH +
Sbjct: 1280 NLFRFDESTTGSNFSFKSALSLSKSPAKLNQSGTSVGTDEESVVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRYDKDV--GQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRI 1410

[Close]

BLAST of SMED30018834 vs. Ensembl Human
Match: RGPD5 (RANBP2 like and GRIP domain containing 5 [Source:HGNC Symbol;Acc:HGNC:32418])

HSP 1 Score: 68.1662 bits (165), Expect = 1.019e-13
Identity = 40/94 (42.55%), Postives = 55/94 (58.51%), Query Frame = -3

Query:  331 DDENIETERD----FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 588
            DD+  +TE      F PVV +P    LV  E E  +V++ + V  + +D  V   +WKERG+G L+ILK    G+ R+LMRR QV KVC NH +
Sbjct: 1023 DDDAYKTEDSDDIHFEPVVQMPEKVELVTGE-EGEKVLYSQGVKLFRFDAEV--RQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWI 1113

HSP 2 Score: 27.335 bits (59), Expect = 1.019e-13
Identity = 19/51 (37.25%), Postives = 25/51 (49.02%), Query Frame = -1

Query:  183 WFIITFEL*IIRKKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEFCQ 335
            W   T  L  +   +   +W +A D+SD   +    AAKF T E AEEF Q
Sbjct: 1112 WITTTMNLKPLSGSDRAWMW-SASDFSDGDAKLERLAAKFKTPELAEEFKQ 1161

HSP 3 Score: 70.4774 bits (171), Expect = 2.940e-13
Identity = 48/133 (36.09%), Postives = 72/133 (54.14%), Query Frame = -3

Query:  331 NLIYFNRNCL-NNFYFISHFYQLSWIIKINMS------DDENI---ETERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 681
            NL  F+ +   +NF F S         K+N S      D+E++   E ERD   F PVV LP ++  +   E+ +V+F      Y YD  V   +WKERG+G ++IL+  +  + RI+MRR+QV K+C NH +
Sbjct: 1280 NLFRFDESTTGSNFSFKSALSLSKSPAKLNQSGTSVGTDEESVVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRYDKDV--GQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRI 1410

[Close]

BLAST of SMED30018834 vs. Ensembl Celegans
Match: npp-9 (Nuclear Pore complex Protein [Source:UniProtKB/TrEMBL;Acc:Q86G90])

HSP 1 Score: 63.1586 bits (152), Expect = 3.064e-11
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = -3

Query:  313 KINMSDDENIETERDFAPVVNLP-LVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 603
            + N   D   E E +F PV+ LP LV  +T  ED EV+F      Y Y   +  N  KERG+G +++LK N+  +YRI+MRR QV K+C N  +    ++
Sbjct:  711 ETNEDGDGEYEPEVEFKPVIPLPDLVEVKTGEEDEEVMFSARCKLYKYYSDLKEN--KERGLGDIKLLKSNDN-KYRIVMRREQVHKLCANFRIEKSMKL 807

HSP 2 Score: 58.9214 bits (141), Expect = 9.010e-10
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = -3

Query:  340 DFAPVVNLP-LVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLN 561
            +F PV+ LP LV  +T  E  + +F      YIY       EWKERG G+L++L   +K  +R++MRR+QV KVC N
Sbjct:  254 EFKPVIPLPDLVEVKTGEEGEQTMFCNRSKLYIY--ANETKEWKERGTGELKVLYNKDKKSWRVVMRRDQVLKVCAN 328

[Close]

Query:  313 KINMSDDENIETERDFAPVVNLP-LVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 603
            + N   D   E E +F PV+ LP LV  +T  ED EV+F      Y Y   +  N  KERG+G +++LK N+  +YRI+MRR QV K+C N  +    ++
Sbjct:  711 ETNEDGDGEYEPEVEFKPVIPLPDLVEVKTGEEDEEVMFSARCKLYKYYSDLKEN--KERGLGDIKLLKSNDN-KYRIVMRREQVHKLCANFRIEKSMKL 807

HSP 2 Score: 58.9214 bits (141), Expect = 9.010e-10
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = -3

Query:  340 DFAPVVNLP-LVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLN 561
            +F PV+ LP LV  +T  E  + +F      YIY       EWKERG G+L++L   +K  +R++MRR+QV KVC N
Sbjct:  254 EFKPVIPLPDLVEVKTGEEGEQTMFCNRSKLYIY--ANETKEWKERGTGELKVLYNKDKKSWRVVMRRDQVLKVCAN 328

[Close]

Query:  313 KINMSDDENIETERDFAPVVNLP-LVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 603
            + N   D   E E +F PV+ LP LV  +T  ED EV+F      Y Y   +  N  KERG+G +++LK N+  +YRI+MRR QV K+C N  +    ++
Sbjct:  711 ETNEDGDGEYEPEVEFKPVIPLPDLVEVKTGEEDEEVMFSARCKLYKYYSDLKEN--KERGLGDIKLLKSNDN-KYRIVMRREQVHKLCANFRIEKSMKL 807

HSP 2 Score: 58.9214 bits (141), Expect = 9.010e-10
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = -3

Query:  340 DFAPVVNLP-LVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLN 561
            +F PV+ LP LV  +T  E  + +F      YIY       EWKERG G+L++L   +K  +R++MRR+QV KVC N
Sbjct:  254 EFKPVIPLPDLVEVKTGEEGEQTMFCNRSKLYIY--ANETKEWKERGTGELKVLYNKDKKSWRVVMRRDQVLKVCAN 328

[Close]

BLAST of SMED30018834 vs. Ensembl Celegans
Match: npp-9 (Nuclear Pore complex Protein [Source:UniProtKB/TrEMBL;Acc:Q86G90])

HSP 1 Score: 63.1586 bits (152), Expect = 3.082e-11
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = -3

Query:  313 KINMSDDENIETERDFAPVVNLP-LVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 603
            + N   D   E E +F PV+ LP LV  +T  ED EV+F      Y Y   +  N  KERG+G +++LK N+  +YRI+MRR QV K+C N  +    ++
Sbjct:  735 ETNEDGDGEYEPEVEFKPVIPLPDLVEVKTGEEDEEVMFSARCKLYKYYSDLKEN--KERGLGDIKLLKSNDN-KYRIVMRREQVHKLCANFRIEKSMKL 831

HSP 2 Score: 50.8322 bits (120), Expect = 3.608e-7
Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = -3

Query:  358 DFAPVVNLP-LVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQV 561
            +F PV+ LP LV  +T  E  + +F      YIY       EWKERG G+L++L   +K  +R++MRR+QV
Sbjct:  254 EFKPVIPLPDLVEVKTGEEGEQTMFCNRSKLYIY--ANETKEWKERGTGELKVLYNKDKKSWRVVMRRDQV 322

[Close]

BLAST of SMED30018834 vs. Ensembl Celegans
Match: npp-9 (Nuclear Pore complex Protein [Source:UniProtKB/TrEMBL;Acc:Q86G90])

HSP 1 Score: 63.1586 bits (152), Expect = 3.082e-11
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = -3

Query:  313 KINMSDDENIETERDFAPVVNLP-LVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 603
            + N   D   E E +F PV+ LP LV  +T  ED EV+F      Y Y   +  N  KERG+G +++LK N+  +YRI+MRR QV K+C N  +    ++
Sbjct:  735 ETNEDGDGEYEPEVEFKPVIPLPDLVEVKTGEEDEEVMFSARCKLYKYYSDLKEN--KERGLGDIKLLKSNDN-KYRIVMRREQVHKLCANFRIEKSMKL 831

HSP 2 Score: 50.8322 bits (120), Expect = 3.608e-7
Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = -3

Query:  358 DFAPVVNLP-LVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQV 561
            +F PV+ LP LV  +T  E  + +F      YIY       EWKERG G+L++L   +K  +R++MRR+QV
Sbjct:  254 EFKPVIPLPDLVEVKTGEEGEQTMFCNRSKLYIY--ANETKEWKERGTGELKVLYNKDKKSWRVVMRRDQV 322

[Close]

BLAST of SMED30018834 vs. Ensembl Fly
Match: Nup358 (gene:FBgn0039302 transcript:FBtr0084813)

HSP 1 Score: 65.4698 bits (158), Expect = 7.541e-12
Identity = 34/111 (30.63%), Postives = 64/111 (57.66%), Query Frame = -3

Query:  277 SDDENIETERD---FAPVVNLPLVIN---ETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRIVNHQKKKYNFSV 591
            +D + +E E +   F+PV+ LP  I+     ED E+++  +   Y  +     ++WKERG+G ++IL+  +  + R++MRR QV K+CLNH+++ +       +  + F+V
Sbjct: 2006 NDSQEVEEEENNTYFSPVIPLPDKIDVKTGEEDEELLYVHKAKLYRLN----ESDWKERGLGDVKILRHRQTKKLRVVMRREQVFKICLNHVLNENVVYREKTETSWMFAV 2112

HSP 2 Score: 61.6178 bits (148), Expect = 1.538e-10
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = -3

Query:  337 QLSWIIKINMSD-DENIETERDFAPVVNLP---LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKE-NEKGRYRILMRRNQVKKVCLNH 621
            Q S + K N SD +E       F PV+ LP    V+   E+ +V+FE       +D     NEWKERG+G +++L++  +  + R+LMRR QV K+C N 
Sbjct: 1584 QESQLNKSNSSDAEEEYVPTAQFVPVIALPDIVEVVTGEENEDVLFEHRAKLLRWDKEA--NEWKERGLGNMKLLRDRTDPNKVRLLMRREQVHKLCCNQ 1681

HSP 3 Score: 58.151 bits (139), Expect = 1.648e-10
Identity = 35/95 (36.84%), Postives = 48/95 (50.53%), Query Frame = -3

Query:  292 DFAPVVNLP--LVINETEDAEVI-FEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI--VNHQKKK 561
            DF P++ LP  + +   E+ E I F      + Y    +  EWKERG G ++IL +   G  R+LMRR+Q  KVC NH +     I   N  K K
Sbjct: 1309 DFKPIIPLPDEVEVRTGEEGEDIKFTSRAKLFRY----VDKEWKERGTGVIKILCDKATGVSRVLMRRDQTHKVCANHTITADITINVANQDKDK 1399

HSP 4 Score: 25.409 bits (54), Expect = 1.648e-10
Identity = 15/37 (40.54%), Postives = 21/37 (56.76%), Query Frame = -1

Query:  189 KKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEF 299
            K   +L+W  A D++DE +    F  +F T E AEEF
Sbjct: 1397 KDKKSLLW-AANDFADEQVTLERFLVRFKTGELAEEF 1432

HSP 5 Score: 51.9878 bits (123), Expect = 2.307e-7
Identity = 32/104 (30.77%), Postives = 57/104 (54.81%), Query Frame = -3

Query:  277 FAPVVNLP--LVINETEDAEV-IFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI--VNHQKKK-----YNFSV 558
            +  +V LP  +V+   E+ E  +F +    Y YD      +WKERGVG++++L+  E   +R++MR+ Q+ K+ LN  +    ++  +N Q K      YN++V
Sbjct: 2534 YDAIVELPDEIVVTTGEENETKLFGERAKLYRYD--AESKQWKERGVGEIKVLEHPELQTFRLIMRQEQIHKLVLNMNISASLQMDYMNAQMKSFLWAGYNYAV 2635

[Close]

BLAST of SMED30018834 vs. Ensembl Fly
Match: Nup358 (gene:FBgn0039302 transcript:FBtr0304692)

HSP 1 Score: 65.4698 bits (158), Expect = 7.832e-12
Identity = 34/111 (30.63%), Postives = 64/111 (57.66%), Query Frame = -3

Query:  277 SDDENIETERD---FAPVVNLPLVIN---ETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRIVNHQKKKYNFSV 591
            +D + +E E +   F+PV+ LP  I+     ED E+++  +   Y  +     ++WKERG+G ++IL+  +  + R++MRR QV K+CLNH+++ +       +  + F+V
Sbjct: 2006 NDSQEVEEEENNTYFSPVIPLPDKIDVKTGEEDEELLYVHKAKLYRLN----ESDWKERGLGDVKILRHRQTKKLRVVMRREQVFKICLNHVLNENVVYREKTETSWMFAV 2112

HSP 2 Score: 61.6178 bits (148), Expect = 1.582e-10
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = -3

Query:  337 QLSWIIKINMSD-DENIETERDFAPVVNLP---LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKE-NEKGRYRILMRRNQVKKVCLNH 621
            Q S + K N SD +E       F PV+ LP    V+   E+ +V+FE       +D     NEWKERG+G +++L++  +  + R+LMRR QV K+C N 
Sbjct: 1584 QESQLNKSNSSDAEEEYVPTAQFVPVIALPDIVEVVTGEENEDVLFEHRAKLLRWDKEA--NEWKERGLGNMKLLRDRTDPNKVRLLMRREQVHKLCCNQ 1681

HSP 3 Score: 58.151 bits (139), Expect = 1.730e-10
Identity = 35/95 (36.84%), Postives = 48/95 (50.53%), Query Frame = -3

Query:  292 DFAPVVNLP--LVINETEDAEVI-FEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI--VNHQKKK 561
            DF P++ LP  + +   E+ E I F      + Y    +  EWKERG G ++IL +   G  R+LMRR+Q  KVC NH +     I   N  K K
Sbjct: 1309 DFKPIIPLPDEVEVRTGEEGEDIKFTSRAKLFRY----VDKEWKERGTGVIKILCDKATGVSRVLMRRDQTHKVCANHTITADITINVANQDKDK 1399

HSP 4 Score: 25.409 bits (54), Expect = 1.730e-10
Identity = 15/37 (40.54%), Postives = 21/37 (56.76%), Query Frame = -1

Query:  189 KKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEF 299
            K   +L+W  A D++DE +    F  +F T E AEEF
Sbjct: 1397 KDKKSLLW-AANDFADEQVTLERFLVRFKTGELAEEF 1432

HSP 5 Score: 51.9878 bits (123), Expect = 2.329e-7
Identity = 32/104 (30.77%), Postives = 57/104 (54.81%), Query Frame = -3

Query:  277 FAPVVNLP--LVINETEDAEV-IFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI--VNHQKKK-----YNFSV 558
            +  +V LP  +V+   E+ E  +F +    Y YD      +WKERGVG++++L+  E   +R++MR+ Q+ K+ LN  +    ++  +N Q K      YN++V
Sbjct: 2557 YDAIVELPDEIVVTTGEENETKLFGERAKLYRYD--AESKQWKERGVGEIKVLEHPELQTFRLIMRQEQIHKLVLNMNISASLQMDYMNAQMKSFLWAGYNYAV 2658

[Close]

BLAST of SMED30018834 vs. Ensembl Zebrafish
Match: RANBP2 (si:ch1073-55a19.2 [Source:ZFIN;Acc:ZDB-GENE-081104-93])

HSP 1 Score: 75.8702 bits (185), Expect = 4.843e-16
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = -3

Query:  331 DDENIETERD----FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 588
            +DE   TE +    F PVV +P    LV  E ED ++++ + V  + +D     ++WKERGVG L++LK N+ G+ R+LMRR QV KVC NH +
Sbjct: 1764 EDEMYRTEENDDIQFEPVVQMPDKVDLVTGE-EDEKILYSQRVKLFRFDPET--SQWKERGVGNLKLLKNNQNGKLRVLMRREQVLKVCANHWI 1854

HSP 2 Score: 26.9498 bits (58), Expect = 4.843e-16
Identity = 19/51 (37.25%), Postives = 23/51 (45.10%), Query Frame = -1

Query:  183 WFIITFEL*IIRKKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEFCQ 335
            W   T  L  +   +   +W  A D+SD        AAKF T E AEEF Q
Sbjct: 1853 WITTTMNLKPLAGSDRAWMWL-ASDFSDGDARLEQLAAKFKTPELAEEFKQ 1902

HSP 3 Score: 75.0998 bits (183), Expect = 5.178e-15
Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = -3

Query:  313 SDDE---NIETERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 591
            +DDE   + E ERD   F PVV +P ++  +   ED +V+F      Y YD  +  ++WKERG+G L+IL+  E  R R++MRR+QV K+C NH + +  ++
Sbjct: 2051 TDDEQDTSQEEERDGQYFEPVVPMPDLVEVSTGEEDEQVLFSHRAKLYRYDKTL--SQWKERGIGDLKILQHYETKRVRLVMRRDQVLKLCANHWIDSSMKL 2150

HSP 4 Score: 72.0182 bits (175), Expect = 6.614e-14
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = -3

Query:  331 ERDFAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 567
            E  F P+V+LP V   +  ED E++F++    Y +D  +   +WKERGVG+L+IL   +K  YR+LMRR QV KVC NH +
Sbjct: 2638 EIHFEPIVSLPEVEVRSGEEDEEILFKERCRLYRWDRDL--QQWKERGVGELKILFHPQKKSYRLLMRREQVLKVCANHTI 2716

HSP 5 Score: 63.5438 bits (153), Expect = 3.304e-12
Identity = 36/95 (37.89%), Postives = 53/95 (55.79%), Query Frame = -3

Query:  331 SDDENIETERD-----FAPVVNLPLVIN---ETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 591
            SD+++   E D     F P+V LP  ++     E+ E +F K    + +D      EWKERG+G ++ILK    G+ R+LMRR QV K+C NH +
Sbjct: 1121 SDNDSTHVEEDEDGPHFEPIVPLPDKVDVKTGEEEEEEMFCKRAKLFRFDADT--KEWKERGIGSIKILKHKTSGKVRLLMRREQVLKICANHYI 1213

HSP 6 Score: 26.1794 bits (56), Expect = 3.304e-12
Identity = 13/35 (37.14%), Postives = 21/35 (60.00%), Query Frame = -1

Query:  189 NTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEF 293
            + + VWY A D++DE+ +    A +F T +DA  F
Sbjct: 1226 DKSWVWY-AMDYADEMPKTEQLAIRFKTADDAALF 1259

[Close]

Query:  331 DDENIETERD----FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 588
            +DE   TE +    F PVV +P    LV  E ED ++++ + V  + +D     ++WKERGVG L++LK N+ G+ R+LMRR QV KVC NH +
Sbjct: 1764 EDEMYRTEENDDIQFEPVVQMPDKVDLVTGE-EDEKILYSQRVKLFRFDPET--SQWKERGVGNLKLLKNNQNGKLRVLMRREQVLKVCANHWI 1854

HSP 2 Score: 26.9498 bits (58), Expect = 4.843e-16
Identity = 19/51 (37.25%), Postives = 23/51 (45.10%), Query Frame = -1

Query:  183 WFIITFEL*IIRKKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEFCQ 335
            W   T  L  +   +   +W  A D+SD        AAKF T E AEEF Q
Sbjct: 1853 WITTTMNLKPLAGSDRAWMWL-ASDFSDGDARLEQLAAKFKTPELAEEFKQ 1902

HSP 3 Score: 75.0998 bits (183), Expect = 5.178e-15
Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = -3

Query:  313 SDDE---NIETERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 591
            +DDE   + E ERD   F PVV +P ++  +   ED +V+F      Y YD  +  ++WKERG+G L+IL+  E  R R++MRR+QV K+C NH + +  ++
Sbjct: 2051 TDDEQDTSQEEERDGQYFEPVVPMPDLVEVSTGEEDEQVLFSHRAKLYRYDKTL--SQWKERGIGDLKILQHYETKRVRLVMRRDQVLKLCANHWIDSSMKL 2150

HSP 4 Score: 72.0182 bits (175), Expect = 6.613e-14
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = -3

Query:  331 ERDFAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 567
            E  F P+V+LP V   +  ED E++F++    Y +D  +   +WKERGVG+L+IL   +K  YR+LMRR QV KVC NH +
Sbjct: 2637 EIHFEPIVSLPEVEVRSGEEDEEILFKERCRLYRWDRDL--QQWKERGVGELKILFHPQKKSYRLLMRREQVLKVCANHTI 2715

HSP 5 Score: 63.5438 bits (153), Expect = 3.359e-12
Identity = 36/95 (37.89%), Postives = 53/95 (55.79%), Query Frame = -3

Query:  331 SDDENIETERD-----FAPVVNLPLVIN---ETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 591
            SD+++   E D     F P+V LP  ++     E+ E +F K    + +D      EWKERG+G ++ILK    G+ R+LMRR QV K+C NH +
Sbjct: 1121 SDNDSTHVEEDEDGPHFEPIVPLPDKVDVKTGEEEEEEMFCKRAKLFRFDADT--KEWKERGIGSIKILKHKTSGKVRLLMRREQVLKICANHYI 1213

HSP 6 Score: 26.1794 bits (56), Expect = 3.359e-12
Identity = 13/35 (37.14%), Postives = 21/35 (60.00%), Query Frame = -1

Query:  189 NTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEF 293
            + + VWY A D++DE+ +    A +F T +DA  F
Sbjct: 1226 DKSWVWY-AMDYADEMPKTEQLAIRFKTADDAALF 1259

[Close]

BLAST of SMED30018834 vs. Ensembl Zebrafish
Match: RANBP2 (si:ch1073-55a19.2 [Source:ZFIN;Acc:ZDB-GENE-081104-93])

HSP 1 Score: 75.8702 bits (185), Expect = 5.387e-16
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = -3

Query:  331 DDENIETERD----FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 588
            +DE   TE +    F PVV +P    LV  E ED ++++ + V  + +D     ++WKERGVG L++LK N+ G+ R+LMRR QV KVC NH +
Sbjct: 1770 EDEMYRTEENDDIQFEPVVQMPDKVDLVTGE-EDEKILYSQRVKLFRFDPET--SQWKERGVGNLKLLKNNQNGKLRVLMRREQVLKVCANHWI 1860

HSP 2 Score: 26.5646 bits (57), Expect = 5.387e-16
Identity = 19/51 (37.25%), Postives = 23/51 (45.10%), Query Frame = -1

Query:  183 WFIITFEL*IIRKKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEFCQ 335
            W   T  L  +   +   +W  A D+SD        AAKF T E AEEF Q
Sbjct: 1859 WITTTMNLKPLAGSDRAWMWL-ASDFSDGDARLEQLAAKFKTPELAEEFKQ 1908

HSP 3 Score: 75.0998 bits (183), Expect = 5.176e-15
Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = -3

Query:  313 SDDE---NIETERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 591
            +DDE   + E ERD   F PVV +P ++  +   ED +V+F      Y YD  +  ++WKERG+G L+IL+  E  R R++MRR+QV K+C NH + +  ++
Sbjct: 2057 TDDEQDTSQEEERDGQYFEPVVPMPDLVEVSTGEEDEQVLFSHRAKLYRYDKTL--SQWKERGIGDLKILQHYETKRVRLVMRRDQVLKLCANHWIDSSMKL 2156

HSP 4 Score: 72.0182 bits (175), Expect = 6.611e-14
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = -3

Query:  331 ERDFAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 567
            E  F P+V+LP V   +  ED E++F++    Y +D  +   +WKERGVG+L+IL   +K  YR+LMRR QV KVC NH +
Sbjct: 2621 EIHFEPIVSLPEVEVRSGEEDEEILFKERCRLYRWDRDL--QQWKERGVGELKILFHPQKKSYRLLMRREQVLKVCANHTI 2699

HSP 5 Score: 63.5438 bits (153), Expect = 3.644e-12
Identity = 36/95 (37.89%), Postives = 53/95 (55.79%), Query Frame = -3

Query:  331 SDDENIETERD-----FAPVVNLPLVIN---ETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 591
            SD+++   E D     F P+V LP  ++     E+ E +F K    + +D      EWKERG+G ++ILK    G+ R+LMRR QV K+C NH +
Sbjct: 1127 SDNDSTHVEEDEDGPHFEPIVPLPDKVDVKTGEEEEEEMFCKRAKLFRFDADT--KEWKERGIGSIKILKHKTSGKVRLLMRREQVLKICANHYI 1219

HSP 6 Score: 26.1794 bits (56), Expect = 3.644e-12
Identity = 13/35 (37.14%), Postives = 21/35 (60.00%), Query Frame = -1

Query:  189 NTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEF 293
            + + VWY A D++DE+ +    A +F T +DA  F
Sbjct: 1232 DKSWVWY-AMDYADEMPKTEQLAIRFKTADDAALF 1265

[Close]

BLAST of SMED30018834 vs. Ensembl Zebrafish
Match: ranbp1 (RAN binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2548])

HSP 1 Score: 65.4698 bits (158), Expect = 1.568e-12
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = -3

Query:  331 FAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 558
            F P+V+LP    +T  ED E +F+     Y +     P EWKERG G +++L+  EKG  R+LMRR++  K+C NH +
Sbjct:   27 FEPIVSLPEQDVKTLEEDEEELFKMRAKLYRFASENDPPEWKERGTGDVKLLRHKEKGSIRLLMRRDRTLKICANHHI 104

[Close]

BLAST of SMED30018834 vs. Ensembl Zebrafish
Match: ftr52p (finTRIM family, member 52, pseudogene [Source:ZFIN;Acc:ZDB-GENEP-110922-3])

HSP 1 Score: 54.299 bits (129), Expect = 3.788e-8
Identity = 32/88 (36.36%), Postives = 48/88 (54.55%), Query Frame = -3

Query:  331 SDDENIET-ERDFAPVVNLPLVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 591
            SDDE  +  E +F P+  L  +    ED E++F++    Y +D     ++WK+RG G ++I     K RY +LMR  Q  KVC NH +
Sbjct:  353 SDDEAPDNNEVEFDPIDPLTEMHPGEEDEEILFKERTRLYHWD-----DQWKDRGFGNIKIFFHPLKKRYHVLMRHEQSLKVCANHSI 435

[Close]

BLAST of SMED30018834 vs. Ensembl Xenopus
Match: mcoln2 (mucolipin 2 [Source:Xenbase;Acc:XB-GENE-5767908])

HSP 1 Score: 88.1965 bits (217), Expect = 2.889e-19
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = -3

Query:  313 SDDENIETER-DFAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 591
            SDDE + ++   F P+V+LP V  ++  ED E++F++    Y +D  V  N+WKERGVG ++IL   EKG YR+LMRR+QV KVC NH++    +I
Sbjct: 2576 SDDEVVHSDDVHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRAV--NQWKERGVGDIKILFHKEKGYYRVLMRRDQVLKVCANHVISTEIKI 2669

HSP 2 Score: 75.0998 bits (183), Expect = 2.041e-15
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = -3

Query:  331 SDDENIETERD---FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 591
            +DD     ERD   F P+V LP    LV  E ED + ++ + V  Y +D      +WKERGVG L+ILK +  G+ R+LMRR QV KVC NH +
Sbjct: 1762 TDDLYKTEERDDIHFEPIVQLPDKVDLVTGE-EDEKTLYSQRVKLYRFD--ATSGQWKERGVGNLKILKNDVNGKLRMLMRREQVLKVCANHWI 1852

HSP 3 Score: 26.1794 bits (56), Expect = 2.041e-15
Identity = 17/49 (34.69%), Postives = 23/49 (46.94%), Query Frame = -1

Query:  189 WFIITFEL*IIRKKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEF 335
            W   T  L  +   + + +W  A D+SD        AAKF T E AE+F
Sbjct: 1851 WITTTMNLKPLTGSDRSWMWM-ANDFSDGDARLEQLAAKFKTPEQAEDF 1898

HSP 4 Score: 65.0846 bits (157), Expect = 1.737e-11
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = -3

Query:  331 DENIETERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 585
            D   E ERD   F PVV LP +I  T   E+ + +F      Y +D     N+WKERG+G L+IL+  +    R++MRR+QV K+C NH +
Sbjct: 2053 DVTQEEERDGQYFEPVVPLPDLIEVTSGEENEQALFCHRAKLYRFDK--DSNQWKERGIGDLKILQRLDNKSARVVMRRDQVLKLCANHRI 2141

HSP 5 Score: 63.929 bits (154), Expect = 4.132e-11
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = -3

Query:  313 FAPVVNLPLVI---NETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 558
            F P+V LP  I      ED E +F      + +D      EWKERG+G ++IL+    G+ R+LMRR QV K+C NH ++   ++
Sbjct: 1145 FEPIVPLPEKIEVRTGEEDEEEMFCNRAKLFRFD--AETKEWKERGIGNVKILRHRVSGKIRLLMRREQVLKICANHYINADMKL 1227

[Close]

BLAST of SMED30018834 vs. Ensembl Xenopus
Match: mcoln2 (mucolipin 2 [Source:Xenbase;Acc:XB-GENE-5767908])

HSP 1 Score: 88.1965 bits (217), Expect = 2.890e-19
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = -3

Query:  313 SDDENIETER-DFAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 591
            SDDE + ++   F P+V+LP V  ++  ED E++F++    Y +D  V  N+WKERGVG ++IL   EKG YR+LMRR+QV KVC NH++    +I
Sbjct: 2592 SDDEVVHSDDVHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRAV--NQWKERGVGDIKILFHKEKGYYRVLMRRDQVLKVCANHVISTEIKI 2685

HSP 2 Score: 75.0998 bits (183), Expect = 2.161e-15
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = -3

Query:  331 SDDENIETERD---FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 591
            +DD     ERD   F P+V LP    LV  E ED + ++ + V  Y +D      +WKERGVG L+ILK +  G+ R+LMRR QV KVC NH +
Sbjct: 1763 TDDLYKTEERDDIHFEPIVQLPDKVDLVTGE-EDEKTLYSQRVKLYRFD--ATSGQWKERGVGNLKILKNDVNGKLRMLMRREQVLKVCANHWI 1853

HSP 3 Score: 26.1794 bits (56), Expect = 2.161e-15
Identity = 17/49 (34.69%), Postives = 23/49 (46.94%), Query Frame = -1

Query:  189 WFIITFEL*IIRKKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEF 335
            W   T  L  +   + + +W  A D+SD        AAKF T E AE+F
Sbjct: 1852 WITTTMNLKPLTGSDRSWMWM-ANDFSDGDARLEQLAAKFKTPEQAEDF 1899

HSP 4 Score: 65.0846 bits (157), Expect = 1.737e-11
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = -3

Query:  331 DENIETERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 585
            D   E ERD   F PVV LP +I  T   E+ + +F      Y +D     N+WKERG+G L+IL+  +    R++MRR+QV K+C NH +
Sbjct: 2054 DVTQEEERDGQYFEPVVPLPDLIEVTSGEENEQALFCHRAKLYRFDK--DSNQWKERGIGDLKILQRLDNKSARVVMRRDQVLKLCANHRI 2142

HSP 5 Score: 63.929 bits (154), Expect = 4.133e-11
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = -3

Query:  313 FAPVVNLPLVI---NETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 558
            F P+V LP  I      ED E +F      + +D      EWKERG+G ++IL+    G+ R+LMRR QV K+C NH ++   ++
Sbjct: 1145 FEPIVPLPEKIEVRTGEEDEEEMFCNRAKLFRFD--AETKEWKERGIGNVKILRHRVSGKIRLLMRREQVLKICANHYINADMKL 1227

[Close]

BLAST of SMED30018834 vs. Ensembl Xenopus
Match: mcoln2 (mucolipin 2 [Source:Xenbase;Acc:XB-GENE-5767908])

HSP 1 Score: 88.1965 bits (217), Expect = 2.892e-19
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = -3

Query:  313 SDDENIETER-DFAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 591
            SDDE + ++   F P+V+LP V  ++  ED E++F++    Y +D  V  N+WKERGVG ++IL   EKG YR+LMRR+QV KVC NH++    +I
Sbjct: 2619 SDDEVVHSDDVHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRAV--NQWKERGVGDIKILFHKEKGYYRVLMRRDQVLKVCANHVISTEIKI 2712

HSP 2 Score: 75.0998 bits (183), Expect = 2.143e-15
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = -3

Query:  331 SDDENIETERD---FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 591
            +DD     ERD   F P+V LP    LV  E ED + ++ + V  Y +D      +WKERGVG L+ILK +  G+ R+LMRR QV KVC NH +
Sbjct: 1762 TDDLYKTEERDDIHFEPIVQLPDKVDLVTGE-EDEKTLYSQRVKLYRFD--ATSGQWKERGVGNLKILKNDVNGKLRMLMRREQVLKVCANHWI 1852

HSP 3 Score: 26.1794 bits (56), Expect = 2.143e-15
Identity = 17/49 (34.69%), Postives = 23/49 (46.94%), Query Frame = -1

Query:  189 WFIITFEL*IIRKKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEF 335
            W   T  L  +   + + +W  A D+SD        AAKF T E AE+F
Sbjct: 1851 WITTTMNLKPLTGSDRSWMWM-ANDFSDGDARLEQLAAKFKTPEQAEDF 1898

HSP 4 Score: 65.0846 bits (157), Expect = 1.738e-11
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = -3

Query:  331 DENIETERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 585
            D   E ERD   F PVV LP +I  T   E+ + +F      Y +D     N+WKERG+G L+IL+  +    R++MRR+QV K+C NH +
Sbjct: 2053 DVTQEEERDGQYFEPVVPLPDLIEVTSGEENEQALFCHRAKLYRFDK--DSNQWKERGIGDLKILQRLDNKSARVVMRRDQVLKLCANHRI 2141

HSP 5 Score: 63.929 bits (154), Expect = 4.136e-11
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = -3

Query:  313 FAPVVNLPLVI---NETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 558
            F P+V LP  I      ED E +F      + +D      EWKERG+G ++IL+    G+ R+LMRR QV K+C NH ++   ++
Sbjct: 1119 FEPIVPLPEKIEVRTGEEDEEEMFCNRAKLFRFD--AETKEWKERGIGNVKILRHRVSGKIRLLMRREQVLKICANHYINADMKL 1201

[Close]

BLAST of SMED30018834 vs. Ensembl Xenopus
Match: mcoln2 (mucolipin 2 [Source:Xenbase;Acc:XB-GENE-5767908])

HSP 1 Score: 88.1965 bits (217), Expect = 2.893e-19
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = -3

Query:  313 SDDENIETER-DFAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 591
            SDDE + ++   F P+V+LP V  ++  ED E++F++    Y +D  V  N+WKERGVG ++IL   EKG YR+LMRR+QV KVC NH++    +I
Sbjct: 2583 SDDEVVHSDDVHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRAV--NQWKERGVGDIKILFHKEKGYYRVLMRRDQVLKVCANHVISTEIKI 2676

HSP 2 Score: 75.0998 bits (183), Expect = 2.108e-15
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = -3

Query:  331 SDDENIETERD---FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 591
            +DD     ERD   F P+V LP    LV  E ED + ++ + V  Y +D      +WKERGVG L+ILK +  G+ R+LMRR QV KVC NH +
Sbjct: 1725 TDDLYKTEERDDIHFEPIVQLPDKVDLVTGE-EDEKTLYSQRVKLYRFD--ATSGQWKERGVGNLKILKNDVNGKLRMLMRREQVLKVCANHWI 1815

HSP 3 Score: 26.1794 bits (56), Expect = 2.108e-15
Identity = 17/49 (34.69%), Postives = 23/49 (46.94%), Query Frame = -1

Query:  189 WFIITFEL*IIRKKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEF 335
            W   T  L  +   + + +W  A D+SD        AAKF T E AE+F
Sbjct: 1814 WITTTMNLKPLTGSDRSWMWM-ANDFSDGDARLEQLAAKFKTPEQAEDF 1861

HSP 4 Score: 65.0846 bits (157), Expect = 1.739e-11
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = -3

Query:  331 DENIETERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 585
            D   E ERD   F PVV LP +I  T   E+ + +F      Y +D     N+WKERG+G L+IL+  +    R++MRR+QV K+C NH +
Sbjct: 2016 DVTQEEERDGQYFEPVVPLPDLIEVTSGEENEQALFCHRAKLYRFDK--DSNQWKERGIGDLKILQRLDNKSARVVMRRDQVLKLCANHRI 2104

HSP 5 Score: 63.929 bits (154), Expect = 4.137e-11
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = -3

Query:  313 FAPVVNLPLVI---NETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 558
            F P+V LP  I      ED E +F      + +D      EWKERG+G ++IL+    G+ R+LMRR QV K+C NH ++   ++
Sbjct: 1149 FEPIVPLPEKIEVRTGEEDEEEMFCNRAKLFRFD--AETKEWKERGIGNVKILRHRVSGKIRLLMRREQVLKICANHYINADMKL 1231

[Close]

BLAST of SMED30018834 vs. Ensembl Xenopus
Match: mcoln2 (mucolipin 2 [Source:Xenbase;Acc:XB-GENE-5767908])

HSP 1 Score: 88.1965 bits (217), Expect = 2.895e-19
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = -3

Query:  313 SDDENIETER-DFAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 591
            SDDE + ++   F P+V+LP V  ++  ED E++F++    Y +D  V  N+WKERGVG ++IL   EKG YR+LMRR+QV KVC NH++    +I
Sbjct: 2662 SDDEVVHSDDVHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRAV--NQWKERGVGDIKILFHKEKGYYRVLMRRDQVLKVCANHVISTEIKI 2755

HSP 2 Score: 75.0998 bits (183), Expect = 2.125e-15
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = -3

Query:  331 SDDENIETERD---FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 591
            +DD     ERD   F P+V LP    LV  E ED + ++ + V  Y +D      +WKERGVG L+ILK +  G+ R+LMRR QV KVC NH +
Sbjct: 1826 TDDLYKTEERDDIHFEPIVQLPDKVDLVTGE-EDEKTLYSQRVKLYRFD--ATSGQWKERGVGNLKILKNDVNGKLRMLMRREQVLKVCANHWI 1916

HSP 3 Score: 26.1794 bits (56), Expect = 2.125e-15
Identity = 17/49 (34.69%), Postives = 23/49 (46.94%), Query Frame = -1

Query:  189 WFIITFEL*IIRKKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEF 335
            W   T  L  +   + + +W  A D+SD        AAKF T E AE+F
Sbjct: 1915 WITTTMNLKPLTGSDRSWMWM-ANDFSDGDARLEQLAAKFKTPEQAEDF 1962

HSP 4 Score: 65.0846 bits (157), Expect = 1.740e-11
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = -3

Query:  331 DENIETERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 585
            D   E ERD   F PVV LP +I  T   E+ + +F      Y +D     N+WKERG+G L+IL+  +    R++MRR+QV K+C NH +
Sbjct: 2117 DVTQEEERDGQYFEPVVPLPDLIEVTSGEENEQALFCHRAKLYRFDK--DSNQWKERGIGDLKILQRLDNKSARVVMRRDQVLKLCANHRI 2205

HSP 5 Score: 63.929 bits (154), Expect = 4.139e-11
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = -3

Query:  313 FAPVVNLPLVI---NETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 558
            F P+V LP  I      ED E +F      + +D      EWKERG+G ++IL+    G+ R+LMRR QV K+C NH ++   ++
Sbjct: 1183 FEPIVPLPEKIEVRTGEEDEEEMFCNRAKLFRFD--AETKEWKERGIGNVKILRHRVSGKIRLLMRREQVLKICANHYINADMKL 1265

[Close]

BLAST of SMED30018834 vs. Ensembl Mouse
Match: Ranbp2 (RAN binding protein 2 [Source:MGI Symbol;Acc:MGI:894323])

HSP 1 Score: 72.0182 bits (175), Expect = 7.700e-15
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = -3

Query:  331 DDENIETERD----FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 588
            DD+  +TE      F PVV +P    LV  E ED +V++ + V  + +D  +  ++WKERG+G L+ILK    G+ R+LMRR QV KVC NH +
Sbjct: 1836 DDDAYKTEDSDDIHFEPVVQMPEKVELVTGE-EDEKVLYSQRVKLFRFDAEI--SQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWI 1926

HSP 2 Score: 26.5646 bits (57), Expect = 7.700e-15
Identity = 19/51 (37.25%), Postives = 24/51 (47.06%), Query Frame = -1

Query:  183 WFIITFEL*IIRKKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEFCQ 335
            W   T  L  +   +   +W  A D+SD   +    AAKF T E AEEF Q
Sbjct: 1925 WITTTMNLKPLSGSDRAWMWL-ASDFSDGDAKLEQLAAKFKTPELAEEFKQ 1974

HSP 3 Score: 74.3294 bits (181), Expect = 1.042e-14
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = -3

Query:  331 DENIETERD--FAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 585
            DE++    D  F P+V+LP V  ++  ED EV+F++    Y +D  V  ++WKERG+G ++IL    K  YRILMRR+QV KVC NH++
Sbjct: 2730 DEDVVHNEDIHFEPIVSLPEVEVKSGEEDEEVLFKERAKLYRWDRDV--SQWKERGIGDIKILWHTMKKYYRILMRRDQVFKVCANHVI 2816

HSP 4 Score: 68.1662 bits (165), Expect = 1.306e-12
Identity = 47/133 (35.34%), Postives = 66/133 (49.62%), Query Frame = -3

Query:  331 NLIYFNRNCLN-NFYFISHFYQLSWIIKINMS---------DDENIETERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 681
            NL  F  +    NF F S         K+N S          D   E ERD   F PVV LP ++  +   E+ +V+F      Y YD  V   +WKERG+G ++IL+  +  + RI+MRR+QV K+C NH +
Sbjct: 2093 NLFRFGESTTGFNFSFKSALSPSKSPAKLNQSGASVGTDEESDVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDV--GQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRI 2223

HSP 5 Score: 62.3882 bits (150), Expect = 1.159e-10
Identity = 33/79 (41.77%), Postives = 43/79 (54.43%), Query Frame = -3

Query:  331 FAPVVNLP---LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 558
            F PVV LP    V    ED E  F      + +D      EWKERG+G ++IL+    G+ R+LMRR QV K+C NH +
Sbjct: 1166 FEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDG--ESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYI 1242

[Close]

BLAST of SMED30018834 vs. Ensembl Mouse
Match: Ranbp1 (RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269])

HSP 1 Score: 60.4622 bits (145), Expect = 1.026e-10
Identity = 31/78 (39.74%), Postives = 46/78 (58.97%), Query Frame = -3

Query:  331 FAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 558
            F P+V+LP    +T  ED E +F+     + +       EWKERG G +++LK  EKG  R+LMRR++  K+C NH +
Sbjct:   27 FEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYI 104

[Close]

Query:  331 FAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 558
            F P+V+LP    +T  ED E +F+     + +       EWKERG G +++LK  EKG  R+LMRR++  K+C NH +
Sbjct:   27 FEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYI 104

[Close]

BLAST of SMED30018834 vs. Ensembl Mouse
Match: Ranbp1 (RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269])

HSP 1 Score: 52.373 bits (124), Expect = 3.368e-8
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = -3

Query:  331 EWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 447
            EWKERG G +++LK  EKG  R+LMRR++  K+C NH +
Sbjct:   16 EWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYI 54

[Close]

Query:  331 EWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 447
            EWKERG G +++LK  EKG  R+LMRR++  K+C NH +
Sbjct:   16 EWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYI 54

[Close]

BLAST of SMED30018834 vs. UniProt/SwissProt
Match: sp|P49792|RBP2_HUMAN (E3 SUMO-protein ligase RanBP2 OS=Homo sapiens OX=9606 GN=RANBP2 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.155e-14
Identity = 41/90 (45.56%), Postives = 59/90 (65.56%), Query Frame = -3

Query:  331 SDDENIETER-DFAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 591
            SD+E +  E   F P+V+LP V  ++  ED E++F++    Y +D  V  ++WKERGVG ++IL    K  YRILMRR+QV KVC NH++
Sbjct: 2900 SDEEVVHNEDIHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRDV--SQWKERGVGDIKILWHTMKNYYRILMRRDQVFKVCANHVI 2987

HSP 2 Score: 73.559 bits (179), Expect = 1.939e-14
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = -3

Query:  331 DDENIETERD----FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 588
            DD+  +TE      F PVV +P    LV  E ED +V++ + V  + +D  V  ++WKERG+G L+ILK    G+ R+LMRR QV KVC NH +
Sbjct: 1999 DDDAYKTEDSDDIHFEPVVQMPEKVELVTGE-EDEKVLYSQRVKLFRFDAEV--SQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWI 2089

HSP 3 Score: 26.5646 bits (57), Expect = 1.939e-14
Identity = 19/51 (37.25%), Postives = 24/51 (47.06%), Query Frame = -1

Query:  183 WFIITFEL*IIRKKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEFCQ 335
            W   T  L  +   +   +W  A D+SD   +    AAKF T E AEEF Q
Sbjct: 2088 WITTTMNLKPLSGSDRAWMWL-ASDFSDGDAKLEQLAAKFKTPELAEEFKQ 2137

HSP 4 Score: 68.9366 bits (167), Expect = 5.177e-12
Identity = 47/133 (35.34%), Postives = 66/133 (49.62%), Query Frame = -3

Query:  331 NLIYFNRNCLN-NFYFISHFYQLSWIIKINMS---------DDENIETERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 681
            NL  F  +    NF F S         K+N S          D   E ERD   F PVV LP ++  +   E+ +V+F      Y YD  V   +WKERG+G ++IL+  +  + RI+MRR+QV K+C NH +
Sbjct: 2256 NLFRFGESTTGFNFSFKSALSPSKSPAKLNQSGTSVGTDEESDVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDV--GQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRI 2386

HSP 5 Score: 65.4698 bits (158), Expect = 6.455e-11
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = -3

Query:  331 FAPVVNLP---LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 558
            F PVV LP    V    ED E  F      + +D  V   EWKERG+G ++IL+    G+ R+LMRR QV K+C NH +
Sbjct: 1172 FEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFD--VESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYI 1248

[Close]

BLAST of SMED30018834 vs. UniProt/SwissProt
Match: sp|H2QII6|RBP2_PANTR (E3 SUMO-protein ligase RanBP2 OS=Pan troglodytes OX=9598 GN=RANBP2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.166e-14
Identity = 41/90 (45.56%), Postives = 59/90 (65.56%), Query Frame = -3

Query:  331 SDDENIETER-DFAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 591
            SD+E +  E   F P+V+LP V  ++  ED E++F++    Y +D  V  ++WKERGVG ++IL    K  YRILMRR+QV KVC NH++
Sbjct: 2900 SDEEVVHNEDIHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRDV--SQWKERGVGDIKILWHTMKNYYRILMRRDQVFKVCANHVI 2987

HSP 2 Score: 73.559 bits (179), Expect = 1.907e-14
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = -3

Query:  331 DDENIETERD----FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 588
            DD+  +TE      F PVV +P    LV  E ED +V++ + V  + +D  V  ++WKERG+G L+ILK    G+ R+LMRR QV KVC NH +
Sbjct: 1999 DDDAYKTEDSDDIHFEPVVQMPEKVELVTGE-EDEKVLYSQRVKLFRFDAEV--SQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWI 2089

HSP 3 Score: 26.5646 bits (57), Expect = 1.907e-14
Identity = 19/51 (37.25%), Postives = 24/51 (47.06%), Query Frame = -1

Query:  183 WFIITFEL*IIRKKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEFCQ 335
            W   T  L  +   +   +W  A D+SD   +    AAKF T E AEEF Q
Sbjct: 2088 WITTTMNLKPLSGSDRAWMWL-ASDFSDGDAKLEQLAAKFKTPELAEEFKQ 2137

HSP 4 Score: 68.9366 bits (167), Expect = 5.793e-12
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = -3

Query:  331 DENIETERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 585
            D   E ERD   F PVV LP ++  +   E+ +V+F      Y YD  V   +WKERG+G ++IL+  +  + RI+MRR+QV K+C NH +
Sbjct: 2298 DVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDV--GQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRI 2386

HSP 5 Score: 65.855 bits (159), Expect = 6.336e-11
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = -3

Query:  331 FAPVVNLP---LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 558
            F PVV LP    V    ED E  F      + +D  V   EWKERG+G ++IL+    G+ R+LMRR QV K+C NH +
Sbjct: 1172 FEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFD--VESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYI 1248

[Close]

BLAST of SMED30018834 vs. UniProt/SwissProt
Match: sp|Q9ERU9|RBP2_MOUSE (E3 SUMO-protein ligase RanBP2 OS=Mus musculus OX=10090 GN=Ranbp2 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.393e-14
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = -3

Query:  331 DDENIETERD----FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 588
            DD+  +TE      F PVV +P    LV  E ED +V++ + V  + +D  +  ++WKERG+G L+ILK    G+ R+LMRR QV KVC NH +
Sbjct: 1836 DDDAYKTEDSDDIHFEPVVQMPEKVELVTGE-EDEKVLYSQRVKLFRFDAEI--SQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWI 1926

HSP 2 Score: 26.5646 bits (57), Expect = 4.393e-14
Identity = 19/51 (37.25%), Postives = 24/51 (47.06%), Query Frame = -1

Query:  183 WFIITFEL*IIRKKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEFCQ 335
            W   T  L  +   +   +W  A D+SD   +    AAKF T E AEEF Q
Sbjct: 1925 WITTTMNLKPLSGSDRAWMWL-ASDFSDGDAKLEQLAAKFKTPELAEEFKQ 1974

HSP 3 Score: 74.3294 bits (181), Expect = 7.287e-14
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = -3

Query:  331 DENIETERD--FAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 585
            DE++    D  F P+V+LP V  ++  ED EV+F++    Y +D  V  ++WKERG+G ++IL    K  YRILMRR+QV KVC NH++
Sbjct: 2730 DEDVVHNEDIHFEPIVSLPEVEVKSGEEDEEVLFKERAKLYRWDRDV--SQWKERGIGDIKILWHTMKKYYRILMRRDQVFKVCANHVI 2816

HSP 4 Score: 68.1662 bits (165), Expect = 9.136e-12
Identity = 47/133 (35.34%), Postives = 66/133 (49.62%), Query Frame = -3

Query:  331 NLIYFNRNCLN-NFYFISHFYQLSWIIKINMS---------DDENIETERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 681
            NL  F  +    NF F S         K+N S          D   E ERD   F PVV LP ++  +   E+ +V+F      Y YD  V   +WKERG+G ++IL+  +  + RI+MRR+QV K+C NH +
Sbjct: 2093 NLFRFGESTTGFNFSFKSALSPSKSPAKLNQSGASVGTDEESDVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDV--GQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRI 2223

HSP 5 Score: 62.3882 bits (150), Expect = 8.104e-10
Identity = 33/79 (41.77%), Postives = 43/79 (54.43%), Query Frame = -3

Query:  331 FAPVVNLP---LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 558
            F PVV LP    V    ED E  F      + +D      EWKERG+G ++IL+    G+ R+LMRR QV K+C NH +
Sbjct: 1166 FEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDG--ESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYI 1242

[Close]

BLAST of SMED30018834 vs. UniProt/SwissProt
Match: sp|Q7Z3J3|RGPD4_HUMAN (RanBP2-like and GRIP domain-containing protein 4 OS=Homo sapiens OX=9606 GN=RGPD4 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.453e-13
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = -3

Query:  331 DDENIETERD----FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 588
            DD+  +TE      F PVV +P    LVI E E  +V++ + V  + +D  V   +WKERG+G L+ILK    G+ R+LMRR QV KVC NH +
Sbjct: 1024 DDDAYKTEDSDDIHFEPVVQMPEKVELVIGE-EGEKVLYSQGVKLFRFDAEV--RQWKERGLGNLKILKNEVNGKPRMLMRREQVLKVCANHWI 1114

HSP 2 Score: 27.335 bits (59), Expect = 1.453e-13
Identity = 19/51 (37.25%), Postives = 25/51 (49.02%), Query Frame = -1

Query:  183 WFIITFEL*IIRKKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEFCQ 335
            W   T  L  +   +   +W +A D+SD   +    AAKF T E AEEF Q
Sbjct: 1113 WITTTMNLKPLSGSDRAWMW-SASDFSDGDAKLERLAAKFKTPELAEEFKQ 1162

HSP 3 Score: 70.0922 bits (170), Expect = 2.192e-12
Identity = 47/133 (35.34%), Postives = 68/133 (51.13%), Query Frame = -3

Query:  331 NLIYFNRNCL-NNFYFISHFYQLSWIIKINMS---------DDENIETERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 681
            NL +F  +   +NF F S         K+N S          D   E ERD   F PVV LP ++  +   E+ +V+F      Y YD  V   +WKERG+G ++IL+  +  + RI+MRR+QV K+C NH +
Sbjct: 1281 NLFHFGESTTGSNFSFKSALSPSKSPAKLNQSGTSVGTDEESDVTQEEERDGQYFEPVVPLPDLVEVSSGEENEKVVFSHRAELYRYDKDV--GQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHTI 1411

[Close]

BLAST of SMED30018834 vs. UniProt/SwissProt
Match: sp|Q99666|RGPD5_HUMAN (RANBP2-like and GRIP domain-containing protein 5/6 OS=Homo sapiens OX=9606 GN=RGPD5 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.233e-13
Identity = 40/94 (42.55%), Postives = 55/94 (58.51%), Query Frame = -3

Query:  331 DDENIETERD----FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 588
            DD+  +TE      F PVV +P    LV  E E  +V++ + V  + +D  V   +WKERG+G L+ILK    G+ R+LMRR QV KVC NH +
Sbjct: 1023 DDDAYKTEDSDDIHFEPVVQMPEKVELVTGE-EGEKVLYSQGVKLFRFDAEV--RQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWI 1113

HSP 2 Score: 27.335 bits (59), Expect = 4.233e-13
Identity = 19/51 (37.25%), Postives = 25/51 (49.02%), Query Frame = -1

Query:  183 WFIITFEL*IIRKKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEFCQ 335
            W   T  L  +   +   +W +A D+SD   +    AAKF T E AEEF Q
Sbjct: 1112 WITTTMNLKPLSGSDRAWMW-SASDFSDGDAKLERLAAKFKTPELAEEFKQ 1161

HSP 3 Score: 70.4774 bits (171), Expect = 1.412e-12
Identity = 48/133 (36.09%), Postives = 72/133 (54.14%), Query Frame = -3

Query:  331 NLIYFNRNCL-NNFYFISHFYQLSWIIKINMS------DDENI---ETERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 681
            NL  F+ +   +NF F S         K+N S      D+E++   E ERD   F PVV LP ++  +   E+ +V+F      Y YD  V   +WKERG+G ++IL+  +  + RI+MRR+QV K+C NH +
Sbjct: 1280 NLFRFDESTTGSNFSFKSALSLSKSPAKLNQSGTSVGTDEESVVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRYDKDV--GQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRI 1410

[Close]

BLAST of SMED30018834 vs. TrEMBL
Match: A0A419PDP1 (Ran-specific GTPase-activating protein (Fragment) OS=Clonorchis sinensis OX=79923 GN=RANBP1 PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.927e-18
Identity = 47/117 (40.17%), Postives = 71/117 (60.68%), Query Frame = -3

Query:  313 FYFISHFYQLSWIIKINMSDDENI----ETERDFAPVVNLP--LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 645
            FY  +  Y+   I  + MSD +N      +E  F PVV+LP   ++N  E+ E +F+++   Y YD    P EWKERG G ++ILK N+ GRYR+LMRR++  KVC NH++ +  ++
Sbjct:    1 FYDPTTIYRP--IASLRMSDLDNSFDSSNSECYFQPVVSLPPIAILNTEENEECVFKRKAKLYRYDRAEDPPEWKERGKGVIQILKHNKTGRYRVLMRRDRTFKVCANHVITSTMQL 115

HSP 2 Score: 31.5722 bits (70), Expect = 8.927e-18
Identity = 16/51 (31.37%), Postives = 28/51 (54.90%), Query Frame = -1

Query:  132 LVWYTARDWSDEVLENCCFAAKFSTKEDAEEFCQIIDKILKELNQENNEST 284
             VW T  D++DEV +      +FS   D +EF Q+ +  +K+  +  ++ST
Sbjct:  125 FVWQTLADFADEVPKPEFLGVRFSCVADTQEFKQVFEDGVKQAVEAKSKST 175

[Close]

BLAST of SMED30018834 vs. TrEMBL
Match: A0A4S2LKP3 (RanBD1 domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_006493 PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.936e-16
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = -3

Query:  313 FAPVVNLP--LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 558
            F PVV+LP   + N  E+ E +F+++   Y YD    P EWKERG G ++ILK  + GRYR+LMRR++  KVC NH++ +  ++
Sbjct:   17 FQPVVSLPPIAISNTEENEEYLFKRKAKLYRYDRAEDPPEWKERGKGVIQILKHKKTGRYRVLMRRDRTFKVCANHVITSTMQL 100

HSP 2 Score: 33.4982 bits (75), Expect = 2.936e-16
Identity = 16/42 (38.10%), Postives = 24/42 (57.14%), Query Frame = -1

Query:  159 LVWYTARDWSDEVLENCCFAAKFSTKEDAEEFCQIIDKILKE 284
             VW T  D+SDEV +      +FS   DA+EF Q+ +  +K+
Sbjct:  110 FVWQTLADFSDEVPKPEFLGVRFSCAADAQEFKQVFEDGVKQ 151

[Close]

BLAST of SMED30018834 vs. TrEMBL
Match: A0A5G3HCP3 (Mucolipin 2 OS=Xenopus tropicalis OX=8364 GN=mcoln2 PE=4 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.537e-16
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = -3

Query:  313 SDDENIETER-DFAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 591
            SDDE + ++   F P+V+LP V  ++  ED E++F++    Y +D  V  N+WKERGVG ++IL   EKG YR+LMRR+QV KVC NH++    +I
Sbjct: 2576 SDDEVVHSDDVHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRAV--NQWKERGVGDIKILFHKEKGYYRVLMRRDQVLKVCANHVISTEIKI 2669

HSP 2 Score: 75.0998 bits (183), Expect = 1.402e-12
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = -3

Query:  331 SDDENIETERD---FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 591
            +DD     ERD   F P+V LP    LV  E ED + ++ + V  Y +D      +WKERGVG L+ILK +  G+ R+LMRR QV KVC NH +
Sbjct: 1762 TDDLYKTEERDDIHFEPIVQLPDKVDLVTGE-EDEKTLYSQRVKLYRFD--ATSGQWKERGVGNLKILKNDVNGKLRMLMRREQVLKVCANHWI 1852

HSP 3 Score: 26.1794 bits (56), Expect = 1.402e-12
Identity = 17/49 (34.69%), Postives = 23/49 (46.94%), Query Frame = -1

Query:  189 WFIITFEL*IIRKKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEF 335
            W   T  L  +   + + +W  A D+SD        AAKF T E AE+F
Sbjct: 1851 WITTTMNLKPLTGSDRSWMWM-ANDFSDGDARLEQLAAKFKTPEQAEDF 1898

HSP 4 Score: 65.0846 bits (157), Expect = 2.727e-8
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = -3

Query:  331 DENIETERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 585
            D   E ERD   F PVV LP +I  T   E+ + +F      Y +D     N+WKERG+G L+IL+  +    R++MRR+QV K+C NH +
Sbjct: 2053 DVTQEEERDGQYFEPVVPLPDLIEVTSGEENEQALFCHRAKLYRFDK--DSNQWKERGIGDLKILQRLDNKSARVVMRRDQVLKLCANHRI 2141

HSP 5 Score: 63.929 bits (154), Expect = 6.487e-8
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = -3

Query:  313 FAPVVNLPLVI---NETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 558
            F P+V LP  I      ED E +F      + +D      EWKERG+G ++IL+    G+ R+LMRR QV K+C NH ++   ++
Sbjct: 1145 FEPIVPLPEKIEVRTGEEDEEEMFCNRAKLFRFD--AETKEWKERGIGNVKILRHRVSGKIRLLMRREQVLKICANHYINADMKL 1227

[Close]

BLAST of SMED30018834 vs. TrEMBL
Match: A0A5G3IX63 (Mucolipin 2 OS=Xenopus tropicalis OX=8364 GN=mcoln2 PE=4 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.538e-16
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = -3

Query:  313 SDDENIETER-DFAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 591
            SDDE + ++   F P+V+LP V  ++  ED E++F++    Y +D  V  N+WKERGVG ++IL   EKG YR+LMRR+QV KVC NH++    +I
Sbjct: 2592 SDDEVVHSDDVHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRAV--NQWKERGVGDIKILFHKEKGYYRVLMRRDQVLKVCANHVISTEIKI 2685

HSP 2 Score: 75.0998 bits (183), Expect = 1.485e-12
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = -3

Query:  331 SDDENIETERD---FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 591
            +DD     ERD   F P+V LP    LV  E ED + ++ + V  Y +D      +WKERGVG L+ILK +  G+ R+LMRR QV KVC NH +
Sbjct: 1763 TDDLYKTEERDDIHFEPIVQLPDKVDLVTGE-EDEKTLYSQRVKLYRFD--ATSGQWKERGVGNLKILKNDVNGKLRMLMRREQVLKVCANHWI 1853

HSP 3 Score: 26.1794 bits (56), Expect = 1.485e-12
Identity = 17/49 (34.69%), Postives = 23/49 (46.94%), Query Frame = -1

Query:  189 WFIITFEL*IIRKKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEF 335
            W   T  L  +   + + +W  A D+SD        AAKF T E AE+F
Sbjct: 1852 WITTTMNLKPLTGSDRSWMWM-ANDFSDGDARLEQLAAKFKTPEQAEDF 1899

HSP 4 Score: 65.0846 bits (157), Expect = 2.728e-8
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = -3

Query:  331 DENIETERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 585
            D   E ERD   F PVV LP +I  T   E+ + +F      Y +D     N+WKERG+G L+IL+  +    R++MRR+QV K+C NH +
Sbjct: 2054 DVTQEEERDGQYFEPVVPLPDLIEVTSGEENEQALFCHRAKLYRFDK--DSNQWKERGIGDLKILQRLDNKSARVVMRRDQVLKLCANHRI 2142

HSP 5 Score: 63.929 bits (154), Expect = 6.490e-8
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = -3

Query:  313 FAPVVNLPLVI---NETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 558
            F P+V LP  I      ED E +F      + +D      EWKERG+G ++IL+    G+ R+LMRR QV K+C NH ++   ++
Sbjct: 1145 FEPIVPLPEKIEVRTGEEDEEEMFCNRAKLFRFD--AETKEWKERGIGNVKILRHRVSGKIRLLMRREQVLKICANHYINADMKL 1227

[Close]

BLAST of SMED30018834 vs. TrEMBL
Match: A0A5G3HBE6 (Mucolipin 2 OS=Xenopus tropicalis OX=8364 GN=mcoln2 PE=4 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.541e-16
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = -3

Query:  313 SDDENIETER-DFAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 591
            SDDE + ++   F P+V+LP V  ++  ED E++F++    Y +D  V  N+WKERGVG ++IL   EKG YR+LMRR+QV KVC NH++    +I
Sbjct: 2619 SDDEVVHSDDVHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRAV--NQWKERGVGDIKILFHKEKGYYRVLMRRDQVLKVCANHVISTEIKI 2712

HSP 2 Score: 75.0998 bits (183), Expect = 1.472e-12
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = -3

Query:  331 SDDENIETERD---FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 591
            +DD     ERD   F P+V LP    LV  E ED + ++ + V  Y +D      +WKERGVG L+ILK +  G+ R+LMRR QV KVC NH +
Sbjct: 1762 TDDLYKTEERDDIHFEPIVQLPDKVDLVTGE-EDEKTLYSQRVKLYRFD--ATSGQWKERGVGNLKILKNDVNGKLRMLMRREQVLKVCANHWI 1852

HSP 3 Score: 26.1794 bits (56), Expect = 1.472e-12
Identity = 17/49 (34.69%), Postives = 23/49 (46.94%), Query Frame = -1

Query:  189 WFIITFEL*IIRKKNTTLVWYTARDWSDEVLENCCFAAKFSTKEDAEEF 335
            W   T  L  +   + + +W  A D+SD        AAKF T E AE+F
Sbjct: 1851 WITTTMNLKPLTGSDRSWMWM-ANDFSDGDARLEQLAAKFKTPEQAEDF 1898

HSP 4 Score: 65.0846 bits (157), Expect = 2.730e-8
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = -3

Query:  331 DENIETERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 585
            D   E ERD   F PVV LP +I  T   E+ + +F      Y +D     N+WKERG+G L+IL+  +    R++MRR+QV K+C NH +
Sbjct: 2053 DVTQEEERDGQYFEPVVPLPDLIEVTSGEENEQALFCHRAKLYRFDK--DSNQWKERGIGDLKILQRLDNKSARVVMRRDQVLKLCANHRI 2141

HSP 5 Score: 63.929 bits (154), Expect = 6.494e-8
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = -3

Query:  313 FAPVVNLPLVI---NETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 558
            F P+V LP  I      ED E +F      + +D      EWKERG+G ++IL+    G+ R+LMRR QV K+C NH ++   ++
Sbjct: 1119 FEPIVPLPEKIEVRTGEEDEEEMFCNRAKLFRFD--AETKEWKERGIGNVKILRHRVSGKIRLLMRREQVLKICANHYINADMKL 1201

[Close]

BLAST of SMED30018834 vs. Ensembl Cavefish
Match: ranbp1 (RAN binding protein 1 [Source:NCBI gene;Acc:107197224])

HSP 1 Score: 65.0846 bits (157), Expect = 2.194e-12
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = -3

Query:  337 FAPVVNLPL--VINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNH 558
            F P+V+LP   V    ED E +F+     Y +     P EWKERG G +++L+  EKG  R+LMRR++  K+C NH
Sbjct:   27 FEPIVSLPEREVKTLEEDEEELFKMRAKLYRFASENDPPEWKERGTGDVKLLRHKEKGSIRLLMRRDRTLKICANH 102

[Close]

BLAST of SMED30018834 vs. Ensembl Cavefish
Match: ranbp1 (RAN binding protein 1 [Source:NCBI gene;Acc:107197224])

HSP 1 Score: 56.225 bits (134), Expect = 2.972e-9
Identity = 26/69 (37.68%), Postives = 41/69 (59.42%), Query Frame = -3

Query:  337 PLVINETEDAEVIFEKEVTAYIYDMVVM--PNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNH 537
            PL +N  + +  +++    A +Y       P EWKERG G +++L+  EKG  R+LMRR++  K+C NH
Sbjct:   30 PLKLNNPQTSTKLWQILRRAKLYRFASENDPPEWKERGTGDVKLLRHKEKGSIRLLMRRDRTLKICANH 98

[Close]

BLAST of SMED30018834 vs. Ensembl Sea Lamprey
Match: si:ch1073-55a19.2 (RAN binding protein 2 [Source:HGNC Symbol;Acc:HGNC:9848])

HSP 1 Score: 73.559 bits (179), Expect = 3.243e-15
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = -3

Query:  331 DENIETERD----FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 585
            +E  +TE D    F PVV +P    LV  E E+ EV + +    + +D  +  ++WKERGVG ++IL+  + GR RILMRR QV KVC NH +
Sbjct: 1797 NEMYKTEEDDEIHFEPVVQMPDKVDLVTGEEEE-EVCYSQRAKLFRFDTAM--SQWKERGVGDIKILRNKQTGRTRILMRREQVLKVCANHCI 1886

HSP 2 Score: 66.2402 bits (160), Expect = 1.003e-12
Identity = 36/78 (46.15%), Postives = 47/78 (60.26%), Query Frame = -3

Query:  337 FAPVVNLPLVIN----ETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNH 558
            F P+V LP +I+    E E+ EV F      Y YD      +WKERGVG +++L+  E GR R+LMRR QV K+C NH
Sbjct: 2120 FEPIVPLPALIDVRTGEEEEQEV-FVHRAKLYRYDREAA--QWKERGVGDVKLLQRLEDGRGRLLMRREQVLKICANH 2194

HSP 3 Score: 61.2326 bits (147), Expect = 4.039e-11
Identity = 33/79 (41.77%), Postives = 43/79 (54.43%), Query Frame = -3

Query:  331 FAPVVNLP---LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 558
            F PVV LP    V    ED E ++      + +D      EWKERGVG  +IL  +  G+ R+LMRR QV K+C NH +
Sbjct: 1139 FEPVVPLPDKVEVKTGEEDEEELYCNRAKLFRFD--ADSKEWKERGVGNFKILCHHVSGKLRVLMRREQVLKICANHYI 1215

[Close]

BLAST of SMED30018834 vs. Ensembl Sea Lamprey
Match: si:ch1073-55a19.2 (RAN binding protein 2 [Source:HGNC Symbol;Acc:HGNC:9848])

HSP 1 Score: 73.559 bits (179), Expect = 3.253e-15
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = -3

Query:  331 DENIETERD----FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 585
            +E  +TE D    F PVV +P    LV  E E+ EV + +    + +D  +  ++WKERGVG ++IL+  + GR RILMRR QV KVC NH +
Sbjct: 1903 NEMYKTEEDDEIHFEPVVQMPDKVDLVTGEEEE-EVCYSQRAKLFRFDTAM--SQWKERGVGDIKILRNKQTGRTRILMRREQVLKVCANHCI 1992

HSP 2 Score: 66.2402 bits (160), Expect = 1.006e-12
Identity = 36/78 (46.15%), Postives = 47/78 (60.26%), Query Frame = -3

Query:  337 FAPVVNLPLVIN----ETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNH 558
            F P+V LP +I+    E E+ EV F      Y YD      +WKERGVG +++L+  E GR R+LMRR QV K+C NH
Sbjct: 2226 FEPIVPLPALIDVRTGEEEEQEV-FVHRAKLYRYDREAA--QWKERGVGDVKLLQRLEDGRGRLLMRREQVLKICANH 2300

HSP 3 Score: 61.2326 bits (147), Expect = 4.051e-11
Identity = 33/79 (41.77%), Postives = 43/79 (54.43%), Query Frame = -3

Query:  331 FAPVVNLP---LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 558
            F PVV LP    V    ED E ++      + +D      EWKERGVG  +IL  +  G+ R+LMRR QV K+C NH +
Sbjct: 1139 FEPVVPLPDKVEVKTGEEDEEELYCNRAKLFRFD--ADSKEWKERGVGNFKILCHHVSGKLRVLMRREQVLKICANHYI 1215

[Close]

BLAST of SMED30018834 vs. Ensembl Sea Lamprey
Match: si:ch1073-55a19.2 (RAN binding protein 2 [Source:HGNC Symbol;Acc:HGNC:9848])

HSP 1 Score: 71.633 bits (174), Expect = 1.003e-14
Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = -3

Query:  313 DENIETERD----FAPVVNLP----LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 585
            +E  +TE D    F PVV +P    LV  E E+ EV + +    + +D  +  ++WKERGVG ++IL+  + GR RILMRR QV KVC NH +     +
Sbjct:  453 NEMYKTEEDDEIHFEPVVQMPDKVDLVTGEEEE-EVCYSQRAKLFRFDTAM--SQWKERGVGDIKILRNKQTGRTRILMRREQVLKVCANHCITTSMSL 548

HSP 2 Score: 58.5362 bits (140), Expect = 2.697e-10
Identity = 33/79 (41.77%), Postives = 43/79 (54.43%), Query Frame = -3

Query:  331 FAPVVNLP---LVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 558
            F PVV LP    V    ED E ++      + +D      EWKERGVG  +IL  +  G+ R+LMRR QV K+C NH +
Sbjct:    1 FEPVVPLPDKVEVKTGEEDEEELYCNRAKLFRFDADS--KEWKERGVGNFKILCHHVSGKLRVLMRREQVLKICANHYI 77

[Close]

BLAST of SMED30018834 vs. Ensembl Yeast
Match: YRB1 (Ran GTPase binding protein; involved in nuclear protein import and RNA export, ubiquitin-mediated protein degradation during the cell cycle; shuttles between the nucleus and cytoplasm; is essential; homolog of human RanBP1 [Source:SGD;Acc:S000002409])

HSP 1 Score: 59.6918 bits (143), Expect = 1.731e-11
Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = -3

Query:  313 FAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 558
            F PVV+L  V  +T  ED EV+++  V A ++       EWKERG G  + LK  +  + RILMRR++  K+C NH++   + +
Sbjct:   65 FEPVVHLEKVDVKTMEEDEEVLYK--VRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYTL 146

[Close]

BLAST of SMED30018834 vs. Ensembl Nematostella
Match: EDO37940 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SEF1])

HSP 1 Score: 73.559 bits (179), Expect = 1.519e-16
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = -3

Query:  310 DFAPVVNLPLV--INETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRIV 561
            DFAP+V+LP V  +   E+ E +F      Y YD     N+WKERGVG ++ILK     + RILMRR+Q++K+C NH + +  +++
Sbjct:    2 DFAPLVSLPKVEVVTGEENEEALFSHRAKLYRYDK--DSNQWKERGVGDIKILKNATDQKCRILMRRDQIRKLCANHNITSEIKLL 85

[Close]

BLAST of SMED30018834 vs. Ensembl Nematostella
Match: EDO41916 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S303])

HSP 1 Score: 70.8626 bits (172), Expect = 6.269e-15
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = -3

Query:  331 FAPVVNLPLV--INETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKEN-EKGRYRILMRRNQVKKVCLNHLV 558
            F P+VNLP +   ++ E+ E IF+     Y YD     N WKERGVG +RILK   +K  YR+LMRR++  K+C NHL+
Sbjct:   20 FKPIVNLPKIELKSQEENEEEIFQMRAKLYRYDTAGDENLWKERGVGNVRILKHKLKKHTYRVLMRRDKTLKICANHLI 98

[Close]

BLAST of SMED30018834 vs. Ensembl Nematostella
Match: EDO37942 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SEF3])

HSP 1 Score: 63.1586 bits (152), Expect = 8.647e-13
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = -3

Query:  331 FAPVVNLPLVI---NETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 558
            F P++ LP  I      E  + +F      Y YD      +WKERG+G +++L   + GR R+LMRR+QV K+C NHL+
Sbjct:    2 FEPIIPLPEKIEVKTGEEHEKALFSHRAKLYRYDSNA--KQWKERGIGDIKLLSNPQTGRVRVLMRRDQVLKICANHLL 78

[Close]

BLAST of SMED30018834 vs. Ensembl Nematostella
Match: EDO37944 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SEF5])

HSP 1 Score: 62.7734 bits (151), Expect = 1.307e-12
Identity = 30/84 (35.71%), Postives = 52/84 (61.90%), Query Frame = -3

Query:  331 ETERDFAPVVNLPL---VINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 573
            E +  F PV+ LP    V+   E+ EV+F      Y +++ +    WKERGVG +++L++ + G+ R++MRR+Q+ K+C NH +
Sbjct:    3 EADAHFKPVIPLPARVQVVTGEENHEVMFSGRAKLYRFNVDL--KAWKERGVGDIKLLRDLKSGKGRVIMRRDQIYKLCANHWI 84

[Close]

BLAST of SMED30018834 vs. Ensembl Nematostella
Match: EDO37943 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SEF4])

HSP 1 Score: 51.9878 bits (123), Expect = 4.711e-9
Identity = 30/79 (37.97%), Postives = 44/79 (55.70%), Query Frame = -3

Query:  331 FAPVVNLP--LVINETEDAEVI-FEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 558
            F PV+ LP  + +   E+ EVI +      Y +D      +WKERG+G ++ILK     + R+LMRR  V K+C NH +
Sbjct:   32 FEPVIALPKKIEVRTGEEEEVIVYSHRAKLYRHDKESA--QWKERGLGDVKILKNPRTLKCRVLMRRENVLKICANHQI 108

HSP 2 Score: 25.409 bits (54), Expect = 4.711e-9
Identity = 12/31 (38.71%), Postives = 18/31 (58.06%), Query Frame = -1

Query:  189 VWYTARDWSDEVLENCCFAAKFSTKEDAEEF 281
            VW+   D+SDE  +   FA +F T   A++F
Sbjct:  125 VWHVLADFSDEEQKKELFAIRFKTVGIAQDF 155

[Close]

BLAST of SMED30018834 vs. Ensembl Medaka
Match: si:ch1073-55a19.2 (RANBP2-like and GRIP domain-containing protein 8 [Source:NCBI gene;Acc:101160447])

HSP 1 Score: 72.7886 bits (177), Expect = 2.491e-14
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = -3

Query:  331 DDENIETERD----FAPVVNLPL---VINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 588
            DD   +TE +    F PVV +P    V+   ED +V++ + V  + +D     ++WKERGVG L+ LK +  GR R+LMRR QV KVC NH +
Sbjct: 1923 DDGMYKTEENDDIQFEPVVQMPDKVDVVTGEEDEQVLYSQRVKLFRFDTST--SQWKERGVGVLKFLKNSINGRLRVLMRREQVLKVCANHWI 2013

HSP 2 Score: 71.633 bits (174), Expect = 6.676e-14
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = -3

Query:  331 SDDENIETERD--FAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 591
            SD+E   T  D  F P+V+LP V  ++  ED E++F++    Y +D     + WKERG+G ++IL    K  YRILMRR+QV +VC NH +
Sbjct: 2775 SDEEEAPTNVDIHFEPIVSLPEVETKSGEEDEEILFKERAKLYRWDR--DQSMWKERGIGDIKILFHPNKRFYRILMRRDQVLRVCANHTI 2863

HSP 3 Score: 68.1662 bits (165), Expect = 1.163e-12
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = -3

Query:  313 SDDENIET---ERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 591
            +DDE   T   ERD   F PVV LP ++  +   E+ + IF      Y +D  V   +WKERG+G L+IL+  +  R R++MRR+QV K+C NH +    ++
Sbjct: 2216 TDDEQDVTQDEERDGQYFEPVVPLPDLVEVSTGEENEQSIFSHRAKLYRFDKDV--GQWKERGIGDLKILQNYDSKRVRLIMRRDQVLKLCANHWISETMKL 2315

HSP 4 Score: 67.781 bits (164), Expect = 1.429e-12
Identity = 44/113 (38.94%), Postives = 60/113 (53.10%), Query Frame = -3

Query:  331 FYFISHFYQLSWIIKINMSDDENIETERD-----FAPVVNLPLVIN---ETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 645
            F F     QL  I K   SD+++   + D     F P+V LP  ++     E+ E +F      Y +D      EWKERG+G L+ILK N KG+ R+LMRR QV K+C NH +
Sbjct: 1137 FKFGESPKQLFDISKQVESDNDSAHADEDEDGPHFEPIVPLPDKVDVKTGEEEEEEMFCNRAKLYRFD--AETKEWKERGIGNLKILKHNTKGKVRLLMRREQVLKICANHYI 1247

[Close]

BLAST of SMED30018834 vs. Ensembl Medaka
Match: si:ch1073-55a19.2 (RANBP2-like and GRIP domain-containing protein 8 [Source:NCBI gene;Acc:101160447])

HSP 1 Score: 72.7886 bits (177), Expect = 2.492e-14
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = -3

Query:  331 DDENIETERD----FAPVVNLPL---VINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 588
            DD   +TE +    F PVV +P    V+   ED +V++ + V  + +D     ++WKERGVG L+ LK +  GR R+LMRR QV KVC NH +
Sbjct: 1923 DDGMYKTEENDDIQFEPVVQMPDKVDVVTGEEDEQVLYSQRVKLFRFDTST--SQWKERGVGVLKFLKNSINGRLRVLMRREQVLKVCANHWI 2013

HSP 2 Score: 71.633 bits (174), Expect = 6.680e-14
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = -3

Query:  331 SDDENIETERD--FAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 591
            SD+E   T  D  F P+V+LP V  ++  ED E++F++    Y +D     + WKERG+G ++IL    K  YRILMRR+QV +VC NH +
Sbjct: 2802 SDEEEAPTNVDIHFEPIVSLPEVETKSGEEDEEILFKERAKLYRWDR--DQSMWKERGIGDIKILFHPNKRFYRILMRRDQVLRVCANHTI 2890

HSP 3 Score: 68.1662 bits (165), Expect = 1.163e-12
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = -3

Query:  313 SDDENIET---ERD---FAPVVNLPLVINET---EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRI 591
            +DDE   T   ERD   F PVV LP ++  +   E+ + IF      Y +D  V   +WKERG+G L+IL+  +  R R++MRR+QV K+C NH +    ++
Sbjct: 2216 TDDEQDVTQDEERDGQYFEPVVPLPDLVEVSTGEENEQSIFSHRAKLYRFDKDV--GQWKERGIGDLKILQNYDSKRVRLIMRRDQVLKLCANHWISETMKL 2315

HSP 4 Score: 67.781 bits (164), Expect = 1.429e-12
Identity = 44/113 (38.94%), Postives = 60/113 (53.10%), Query Frame = -3

Query:  331 FYFISHFYQLSWIIKINMSDDENIETERD-----FAPVVNLPLVIN---ETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLV 645
            F F     QL  I K   SD+++   + D     F P+V LP  ++     E+ E +F      Y +D      EWKERG+G L+ILK N KG+ R+LMRR QV K+C NH +
Sbjct: 1137 FKFGESPKQLFDISKQVESDNDSAHADEDEDGPHFEPIVPLPDKVDVKTGEEEEEEMFCNRAKLYRFD--AETKEWKERGIGNLKILKHNTKGKVRLLMRREQVLKICANHYI 1247

[Close]

BLAST of SMED30018834 vs. Ensembl Medaka
Match: ranbp1 (RAN binding protein 1 [Source:NCBI gene;Acc:101155441])

HSP 1 Score: 65.855 bits (159), Expect = 9.731e-13
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = -3

Query:  337 FAPVVNLPLVINET--EDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNH 558
            F P+V+LP    +T  ED E +F+     Y +     P EWKERG G +++LK  EKG  R+LMRR++  K+C NH
Sbjct:   26 FEPIVSLPEQDVKTLEEDEEELFKMRAKLYRFASENDPPEWKERGTGDVKLLKHKEKGTIRLLMRRDRTLKICANH 101

[Close]

BLAST of SMED30018834 vs. Planmine SMEST
Match: SMESG000010762.1 (SMESG000010762.1)

HSP 1 Score: 206.068 bits (523), Expect = 8.546e-68
Identity = 103/111 (92.79%), Postives = 104/111 (93.69%), Query Frame = -3

Query:  262 MSDDENIETERDFAPVVNLPLVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRIVNHQKKKYNFSVVYCSR 594
            MSDDENIETERDFAPVVNLPLVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRIVNHQKK     V Y +R
Sbjct:    1 MSDDENIETERDFAPVVNLPLVINETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRIVNHQKKNTTL-VWYTAR 110

HSP 2 Score: 71.2478 bits (173), Expect = 1.738e-15
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = -1

Query:  204 RKKNTTLVWYTARDWSDEVLENCCFAAKFSTKE 302
            +KKNTTLVWYTARDWSDEVLENCCFAAKFSTKE
Sbjct:   98 QKKNTTLVWYTARDWSDEVLENCCFAAKFSTKE 130

[Close]

BLAST of SMED30018834 vs. Planmine SMEST
Match: SMESG000078741.1 (SMESG000078741.1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.336e-11
Identity = 34/96 (35.42%), Postives = 58/96 (60.42%), Query Frame = -3

Query:  331 SDDENIETERD--FAPVVNLPLVINETEDAE---VIFEKEVTAYIYDMVVMPNEWKERGVGKLRILKENE----KGRYRILMRRNQVKKVCLNHLV 591
            + ++N+E E D  F P+++LP +++  +D E   V+F      Y +    + NEWKERGVG+++IL+  E        +++MRR+QV+K+C N  V
Sbjct:  701 NSEQNLEEEHDPHFQPIIDLPPLVSVQKDEELHDVLFRSRCKLYRF----INNEWKERGVGEMKILQTKESVDQSKPVKLVMRRDQVRKICCNQRV 792

[Close]

BLAST of SMED30018834 vs. Planmine SMEST
Match: SMESG000031772.1 (SMESG000031772.1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.484e-11
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = -3

Query:  331 SDDENIETER---DFAPVVNLPLV--INETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRIL--KENEKGRYRILMRRNQVKKVCLNHLV 591
            +DDE    E    D+ P+++LP V  I   E++E +F +    Y +      NEWKERG+G+++IL  K + K  YR++MRR QV+KV  NH +
Sbjct: 1328 NDDEGENPENFNPDYQPIISLPEVETITGEENSECLFSERCKLYKWS-----NEWKERGLGEMKILASKTDNKKSYRLVMRREQVRKVVCNHAI 1416

[Close]

BLAST of SMED30018834 vs. Planmine SMEST
Match: SMESG000031772.1 (SMESG000031772.1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.503e-11
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = -3

Query:  331 SDDENIETER---DFAPVVNLPLV--INETEDAEVIFEKEVTAYIYDMVVMPNEWKERGVGKLRIL--KENEKGRYRILMRRNQVKKVCLNHLV 591
            +DDE    E    D+ P+++LP V  I   E++E +F +    Y +      NEWKERG+G+++IL  K + K  YR++MRR QV+KV  NH +
Sbjct: 1303 NDDEGENPENFNPDYQPIISLPEVETITGEENSECLFSERCKLYKWS-----NEWKERGLGEMKILASKTDNKKSYRLVMRREQVRKVVCNHAI 1391

The following BLAST results are available for this feature:

BLAST of SMED30018834 vs. Ensembl Human
BLAST of SMED30018834 vs. Ensembl Celegans
BLAST of SMED30018834 vs. Ensembl Fly
BLAST of SMED30018834 vs. Ensembl Zebrafish
BLAST of SMED30018834 vs. Ensembl Xenopus
BLAST of SMED30018834 vs. Ensembl Mouse
BLAST of SMED30018834 vs. UniProt/SwissProt
BLAST of SMED30018834 vs. TrEMBL
BLAST of SMED30018834 vs. Ensembl Cavefish
BLAST of SMED30018834 vs. Ensembl Sea Lamprey
BLAST of SMED30018834 vs. Ensembl Yeast
BLAST of SMED30018834 vs. Ensembl Nematostella
BLAST of SMED30018834 vs. Ensembl Medaka
BLAST of SMED30018834 vs. Planmine SMEST

BLAST of SMED30018834 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RANBP2	2.404e-15	45.56	RAN binding protein 2 [Source:HGNC Symbol;Acc:HGNC...	[more]
RGPD4	3.499e-14	43.62	RANBP2 like and GRIP domain containing 4 [Source:H...	[more]
RGPD8	7.865e-14	42.55	RANBP2 like and GRIP domain containing 8 [Source:H...	[more]
RGPD6	1.019e-13	42.55	RANBP2 like and GRIP domain containing 6 [Source:H...	[more]
RGPD5	1.019e-13	42.55	RANBP2 like and GRIP domain containing 5 [Source:H...	[more]

BLAST of SMED30018834 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
npp-9	3.064e-11	39.00	Nuclear Pore complex Protein [Source:UniProtKB/Tr...	[more]
npp-9	3.064e-11	39.00	Nuclear Pore complex Protein [Source:UniProtKB/Tr...	[more]
npp-9	3.064e-11	39.00	Nuclear Pore complex Protein [Source:UniProtKB/Tr...	[more]
npp-9	3.082e-11	39.00	Nuclear Pore complex Protein [Source:UniProtKB/Tr...	[more]
npp-9	3.082e-11	39.00	Nuclear Pore complex Protein [Source:UniProtKB/Tr...	[more]

BLAST of SMED30018834 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2


Match Name	E-value	Identity	Description
Nup358	7.541e-12	30.63	gene:FBgn0039302 transcript:FBtr0084813	[more]
Nup358	7.832e-12	30.63	gene:FBgn0039302 transcript:FBtr0304692	[more]

BLAST of SMED30018834 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RANBP2	4.843e-16	42.55	si:ch1073-55a19.2 [Source:ZFIN;Acc:ZDB-GENE-081104...	[more]
RANBP2	4.843e-16	42.55	si:ch1073-55a19.2 [Source:ZFIN;Acc:ZDB-GENE-081104...	[more]
RANBP2	5.387e-16	42.55	si:ch1073-55a19.2 [Source:ZFIN;Acc:ZDB-GENE-081104...	[more]
ranbp1	1.568e-12	41.03	RAN binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-04...	[more]
ftr52p	3.788e-8	36.36	finTRIM family, member 52, pseudogene [Source:ZFIN...	[more]

BLAST of SMED30018834 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
mcoln2	2.889e-19	45.83	mucolipin 2 [Source:Xenbase;Acc:XB-GENE-5767908]	[more]
mcoln2	2.890e-19	45.83	mucolipin 2 [Source:Xenbase;Acc:XB-GENE-5767908]	[more]
mcoln2	2.892e-19	45.83	mucolipin 2 [Source:Xenbase;Acc:XB-GENE-5767908]	[more]
mcoln2	2.893e-19	45.83	mucolipin 2 [Source:Xenbase;Acc:XB-GENE-5767908]	[more]
mcoln2	2.895e-19	45.83	mucolipin 2 [Source:Xenbase;Acc:XB-GENE-5767908]	[more]

BLAST of SMED30018834 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Ranbp2	7.700e-15	42.55	RAN binding protein 2 [Source:MGI Symbol;Acc:MGI:8...	[more]
Ranbp1	1.026e-10	39.74	RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:9...	[more]
Ranbp1	1.026e-10	39.74	RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:9...	[more]
Ranbp1	3.368e-8	53.85	RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:9...	[more]
Ranbp1	3.368e-8	53.85	RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:9...	[more]

BLAST of SMED30018834 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P49792\|RBP2_HUMAN	1.155e-14	45.56	E3 SUMO-protein ligase RanBP2 OS=Homo sapiens OX=9...	[more]
sp\|H2QII6\|RBP2_PANTR	1.166e-14	45.56	E3 SUMO-protein ligase RanBP2 OS=Pan troglodytes O...	[more]
sp\|Q9ERU9\|RBP2_MOUSE	4.393e-14	42.55	E3 SUMO-protein ligase RanBP2 OS=Mus musculus OX=1...	[more]
sp\|Q7Z3J3\|RGPD4_HUMAN	1.453e-13	43.62	RanBP2-like and GRIP domain-containing protein 4 O...	[more]
sp\|Q99666\|RGPD5_HUMAN	4.233e-13	42.55	RANBP2-like and GRIP domain-containing protein 5/6...	[more]

BLAST of SMED30018834 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A419PDP1	8.927e-18	40.17	Ran-specific GTPase-activating protein (Fragment) ...	[more]
A0A4S2LKP3	2.936e-16	44.05	RanBD1 domain-containing protein OS=Opisthorchis f...	[more]
A0A5G3HCP3	4.537e-16	45.83	Mucolipin 2 OS=Xenopus tropicalis OX=8364 GN=mcoln...	[more]
A0A5G3IX63	4.538e-16	45.83	Mucolipin 2 OS=Xenopus tropicalis OX=8364 GN=mcoln...	[more]
A0A5G3HBE6	4.541e-16	45.83	Mucolipin 2 OS=Xenopus tropicalis OX=8364 GN=mcoln...	[more]

BLAST of SMED30018834 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2


Match Name	E-value	Identity	Description
ranbp1	2.194e-12	42.11	RAN binding protein 1 [Source:NCBI gene;Acc:107197...	[more]
ranbp1	2.972e-9	37.68	RAN binding protein 1 [Source:NCBI gene;Acc:107197...	[more]

BLAST of SMED30018834 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 3


Match Name	E-value	Identity	Description
si:ch1073-55a19.2	3.243e-15	43.01	RAN binding protein 2 [Source:HGNC Symbol;Acc:HGNC...	[more]
si:ch1073-55a19.2	3.253e-15	43.01	RAN binding protein 2 [Source:HGNC Symbol;Acc:HGNC...	[more]
si:ch1073-55a19.2	1.003e-14	40.40	RAN binding protein 2 [Source:HGNC Symbol;Acc:HGNC...	[more]

BLAST of SMED30018834 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
YRB1	1.731e-11	38.10	Ran GTPase binding protein; involved in nuclear pr...	[more]

BLAST of SMED30018834 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO37940	1.519e-16	41.86	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO41916	6.269e-15	46.84	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO37942	8.647e-13	39.24	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO37944	1.307e-12	35.71	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO37943	4.711e-9	37.97	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of SMED30018834 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3


Match Name	E-value	Identity	Description
si:ch1073-55a19.2	2.491e-14	41.94	RANBP2-like and GRIP domain-containing protein 8 [...	[more]
si:ch1073-55a19.2	2.492e-14	41.94	RANBP2-like and GRIP domain-containing protein 8 [...	[more]
ranbp1	9.731e-13	43.42	RAN binding protein 1 [Source:NCBI gene;Acc:101155...	[more]

BLAST of SMED30018834 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4


Match Name	E-value	Identity	Description
SMESG000010762.1	8.546e-68	92.79	SMESG000010762.1	[more]
SMESG000078741.1	1.336e-11	35.42	SMESG000078741.1	[more]
SMESG000031772.1	2.484e-11	39.36	SMESG000031772.1	[more]
SMESG000031772.1	2.503e-11	39.36	SMESG000031772.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30018834 ID=SMED30018834|Name=SMED30018834|organism=Schmidtea mediterranea sexual|type=transcript|length=731bp
TTTTTTTTTCTGAGACACATAATTTATTTAATAGATAATTTTTCTACCGA
TTCAGAAATCTTGTCGTCCTTTTCAATTATTTTTGTTTCCTTTTTCTTTT
TGTCCAAATTATTTTTGGTATCAATCTTAGGAGTTGATTCATTGTTTTCT
TGATTTAGTTCTTTGAGAATTTTATCGATAATCTGGCAAAATTCCTCAGC
ATCTTCTTTAGTAGAAAATTTAGCAGCAAAACAGCAATTTTCAAGTACTT
CGTCAGACCAATCGCGAGCAGTATACCACACTAAAGTTGTATTTTTTTTT
CTGATGATTCACAATTCGAAAGTGATTATGAACCAAGTGGTTTAAACAGA
CCTTTTTAACCTGGTTTCTACGCATTAAAATTCGATATCTGCCTTTCTCA
TTTTCTTTTAAAATTCTTAATTTACCTACACCTCTTTCCTTCCATTCGTT
AGGCATGACCACCATATCATAAATATAAGCTGTAACTTCTTTCTCGAAAA
TAACTTCAGCATCTTCAGTTTCATTTATTACTAACGGCAAGTTAACAACT
GGAGCAAAATCCCTTTCAGTTTCGATATTTTCATCGTCTGACATGTTAAT
TTTAATTATCCAACTTAGTTGATAAAAATGTGATATAAAATAGAAATTAT
TTAAACAATTTCTATTAAAATAAATCAAATTACAAATATATTTTTAAACT
TATATGAATAAATTTTGTAAAACTTAACAAT

protein sequence of SMED30018834-orf-1

>SMED30018834-orf-1 ID=SMED30018834-orf-1|Name=SMED30018834-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=114bp
MSDDENIETERDFAPVVNLPLVINETEDAEVIFEKEVTAYIYDMVVMPNE
WKERGVGKLRILKENEKGRYRILMRRNQVKKVCLNHLVHNHFRIVNHQKK
KYNFSVVYCSRLV*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000026	gut
PLANA:0000429	neoblast
PLANA:0002109	X1 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR000156	Ran_bind_dom
IPR011993	PH-like_dom_sf

Vocabulary: **biological process**
Term	Definition
GO:0046907	intracellular transport

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000156	Ran binding domain	SMART	SM00160	ranbd_3	coord: 13..111 e-value: 1.5E-7 score: 25.1
IPR000156	Ran binding domain	PFAM	PF00638	Ran_BP1	coord: 24..109 e-value: 4.4E-21 score: 75.4
IPR000156	Ran binding domain	PROSITE	PS50196	RANBD1	coord: 12..113 score: 21.325
IPR011993	PH-like domain superfamily	GENE3D	G3DSA:2.30.29.30		coord: 1..113 e-value: 9.2E-27 score: 95.4
None	No IPR available	PANTHER	PTHR23138	RAN BINDING PROTEIN	coord: 4..113
None	No IPR available	PANTHER	PTHR23138:SF139		coord: 4..113
None	No IPR available	SUPERFAMILY	SSF50729	PH domain-like	coord: 15..108