AT rich interactive domain containing protein

Overview


Name	AT rich interactive domain containing protein
Smed ID	SMED30018722
Length (bp)	1906

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of AT rich interactive domain containing protein (SMED30018722) t-SNE clustered cells

Violin plots show distribution of expression levels for AT rich interactive domain containing protein (SMED30018722) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of AT rich interactive domain containing protein (SMED30018722) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30018722

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 1

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication	Specimen	Lifecycle	Evidence
muscle cell	SMED30018722	h1SMcG0003882	dd_Smed_v4_13474_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Human
Match: ARID3A (AT-rich interaction domain 3A [Source:HGNC Symbol;Acc:HGNC:3031])

HSP 1 Score: 237.269 bits (604), Expect = 5.245e-72
Identity = 108/134 (80.60%), Postives = 118/134 (88.06%), Query Frame = 1

Query:  724 NWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            +W YEEQFKQLYEL  D KRKEFLDDLFSFMQK+G+PVNRIPIMAKQVLDL+ LY LV  +GGLVEVINKKLWREITKGLNLP+SITSAAFTLRTQYMKYLYP+ECE   LS P+ELQAAID NRRE RR ++ 
Sbjct:   69 DWTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNRREGRRQSFG 202

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Human
Match: ARID3C (AT-rich interaction domain 3C [Source:HGNC Symbol;Acc:HGNC:21209])

HSP 1 Score: 234.187 bits (596), Expect = 5.828e-70
Identity = 102/134 (76.12%), Postives = 119/134 (88.81%), Query Frame = 1

Query:  724 NWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
             W YEEQFKQLYEL  D KRKEFLDDLFSFMQK+G+PVNR+PIMAKQVLDLY L++LV ++GGLVEVIN+K+WRE+T+GL+LP++ITSAAFTLRTQYMKYLYP+ECE   LS+P ELQAAID NRRE RR  Y+
Sbjct:   97 EWTYEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYT 230

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Human
Match: ARID3A (AT-rich interaction domain 3A [Source:HGNC Symbol;Acc:HGNC:3031])

HSP 1 Score: 238.039 bits (606), Expect = 1.750e-69
Identity = 114/160 (71.25%), Postives = 123/160 (76.88%), Query Frame = 1

Query:  724 NWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYSFEYPSLNNSQSFTGQNLGFHHSGNSG 1203
            +W YEEQFKQLYEL  D KRKEFLDDLFSFMQK+G+PVNRIPIMAKQVLDL+ LY LV  +GGLVEVINKKLWREITKGLNLP+SITSAAFTLRTQYMKYLYP+ECE   LS P+ELQAAID NRRE RR             QSF G    +   G  G
Sbjct:  222 DWTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNRREGRR-------------QSFGGSLFAYSPGGAHG 368

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Human
Match: ARID3B (AT-rich interaction domain 3B [Source:HGNC Symbol;Acc:HGNC:14350])

HSP 1 Score: 226.868 bits (577), Expect = 1.061e-65
Identity = 106/158 (67.09%), Postives = 120/158 (75.95%), Query Frame = 1

Query:  724 NWNYEEQFKQ------------------------LYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            NWN +EQ KQ                        LYEL  D +RKEFLDDLF FMQK+G+P+NRIPIMAKQ+LDLY LYKLV  +GGLVE+INKK+WREITKGLNLP+SITSAAFTLRTQYMKYLY +ECE   LS+P+ELQAAIDGNRRE RRP+YS
Sbjct:  175 NWNLDEQLKQNGGLAWSDDADGGRGREISRDFAKLYELDGDPERKEFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYECEKKALSSPAELQAAIDGNRREGRRPSYS 332

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Human
Match: ARID3B (AT-rich interaction domain 3B [Source:HGNC Symbol;Acc:HGNC:14350])

HSP 1 Score: 226.868 bits (577), Expect = 1.263e-65
Identity = 106/158 (67.09%), Postives = 120/158 (75.95%), Query Frame = 1

Query:  724 NWNYEEQFKQ------------------------LYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            NWN +EQ KQ                        LYEL  D +RKEFLDDLF FMQK+G+P+NRIPIMAKQ+LDLY LYKLV  +GGLVE+INKK+WREITKGLNLP+SITSAAFTLRTQYMKYLY +ECE   LS+P+ELQAAIDGNRRE RRP+YS
Sbjct:  175 NWNLDEQLKQNGGLAWSDDADGGRGREISRDFAKLYELDGDPERKEFLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYECEKKALSSPAELQAAIDGNRREGRRPSYS 332

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Celegans
Match: cfi-1 (AT-rich interactive domain-containing protein cfi-1 [Source:UniProtKB/Swiss-Prot;Acc:O02326])

HSP 1 Score: 224.942 bits (572), Expect = 2.560e-66
Identity = 107/139 (76.98%), Postives = 115/139 (82.73%), Query Frame = 1

Query:  727 WNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREA--RRPTYSFEYP 1137
            W+YEEQFKQLYELSDD KRKE+LDD  +FM + G PV RIPIMAKQVLDLY LY+LVV  GGLVE+INKKLWREITKGLNLPSSITSAAFTLRTQY KYLY +ECE  KLS  S+LQ AIDGNRREA  RR   SF  P
Sbjct:  166 WSYEEQFKQLYELSDDVKRKEWLDDWLNFMHRIGKPVTRIPIMAKQVLDLYELYRLVVQHGGLVEIINKKLWREITKGLNLPSSITSAAFTLRTQYQKYLYDYECEKEKLSNQSDLQQAIDGNRREAPGRRTAPSFPLP 304

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Celegans
Match: let-526 (pep chromosome:WBcel235:I:5300901:5313926:-1 gene:WBGene00002717.1 transcript:C01G8.9c.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:let-526)

HSP 1 Score: 65.4698 bits (158), Expect = 1.050e-10
Identity = 34/116 (29.31%), Postives = 57/116 (49.14%), Query Frame = 1

Query:  775 CKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAA-FTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPT 1119
             +R+ F + L  F +  G P+  +P ++KQ +DL+ LY  V ++GG  +V   K W+ +    N   + +SAA + LR  Y ++L   EC     +   E+  A    R+  R P 
Sbjct:  344 AERRGFFERLIEFCEHNGEPLTMVPQVSKQSIDLHRLYIGVRAKGGFQQVTKDKYWKNLCTEANPDLAESSAAGYQLRKHYQRHLLMLECRETGRNPEDEVAFADKMKRQRKREPA 459

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Celegans
Match: let-526 (pep chromosome:WBcel235:I:5300901:5317392:-1 gene:WBGene00002717.1 transcript:C01G8.9c.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:let-526)

HSP 1 Score: 65.4698 bits (158), Expect = 1.050e-10
Identity = 34/116 (29.31%), Postives = 57/116 (49.14%), Query Frame = 1

Query:  775 CKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAA-FTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPT 1119
             +R+ F + L  F +  G P+  +P ++KQ +DL+ LY  V ++GG  +V   K W+ +    N   + +SAA + LR  Y ++L   EC     +   E+  A    R+  R P 
Sbjct:  344 AERRGFFERLIEFCEHNGEPLTMVPQVSKQSIDLHRLYIGVRAKGGFQQVTKDKYWKNLCTEANPDLAESSAAGYQLRKHYQRHLLMLECRETGRNPEDEVAFADKMKRQRKREPA 459

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Celegans
Match: let-526 (pep chromosome:WBcel235:I:5300901:5310726:-1 gene:WBGene00002717.1 transcript:C01G8.9a.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:let-526)

HSP 1 Score: 65.0846 bits (157), Expect = 1.268e-10
Identity = 34/116 (29.31%), Postives = 57/116 (49.14%), Query Frame = 1

Query:  775 CKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAA-FTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPT 1119
             +R+ F + L  F +  G P+  +P ++KQ +DL+ LY  V ++GG  +V   K W+ +    N   + +SAA + LR  Y ++L   EC     +   E+  A    R+  R P 
Sbjct:  263 AERRGFFERLIEFCEHNGEPLTMVPQVSKQSIDLHRLYIGVRAKGGFQQVTKDKYWKNLCTEANPDLAESSAAGYQLRKHYQRHLLMLECRETGRNPEDEVAFADKMKRQRKREPA 378

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Celegans
Match: let-526 (pep chromosome:WBcel235:I:5300901:5313926:-1 gene:WBGene00002717.1 transcript:C01G8.9d.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:let-526)

HSP 1 Score: 65.0846 bits (157), Expect = 1.389e-10
Identity = 34/116 (29.31%), Postives = 57/116 (49.14%), Query Frame = 1

Query:  775 CKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAA-FTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPT 1119
             +R+ F + L  F +  G P+  +P ++KQ +DL+ LY  V ++GG  +V   K W+ +    N   + +SAA + LR  Y ++L   EC     +   E+  A    R+  R P 
Sbjct:  317 AERRGFFERLIEFCEHNGEPLTMVPQVSKQSIDLHRLYIGVRAKGGFQQVTKDKYWKNLCTEANPDLAESSAAGYQLRKHYQRHLLMLECRETGRNPEDEVAFADKMKRQRKREPA 432

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Fly
Match: retn (gene:FBgn0004795 transcript:FBtr0340029)

HSP 1 Score: 237.654 bits (605), Expect = 1.570e-67
Identity = 109/150 (72.67%), Postives = 129/150 (86.00%), Query Frame = 1

Query:  724 NWNYEEQFKQ---LYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYSFEYPSLNNSQSFT 1164
             W++EEQFKQ   LYE++DD KRKEFLDDLFSFMQK+G+P+NR+PIMAK VLDLY LY LV++RGGLV+VINKKLW+EI KGL+LPSSITSAAFTLRTQYMKYLYP+ECE   LSTP+ELQAAIDGNRRE RR +Y  +Y +++N    T
Sbjct:  267 GWSFEEQFKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYG-QYEAMHNQMPMT 415

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Fly
Match: retn (gene:FBgn0004795 transcript:FBtr0072072)

HSP 1 Score: 237.654 bits (605), Expect = 1.637e-67
Identity = 109/150 (72.67%), Postives = 129/150 (86.00%), Query Frame = 1

Query:  724 NWNYEEQFKQ---LYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYSFEYPSLNNSQSFT 1164
             W++EEQFKQ   LYE++DD KRKEFLDDLFSFMQK+G+P+NR+PIMAK VLDLY LY LV++RGGLV+VINKKLW+EI KGL+LPSSITSAAFTLRTQYMKYLYP+ECE   LSTP+ELQAAIDGNRRE RR +Y  +Y +++N    T
Sbjct:  269 GWSFEEQFKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYG-QYEAMHNQMPMT 417

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Fly
Match: retn (gene:FBgn0004795 transcript:FBtr0072073)

HSP 1 Score: 237.654 bits (605), Expect = 1.797e-67
Identity = 109/150 (72.67%), Postives = 129/150 (86.00%), Query Frame = 1

Query:  724 NWNYEEQFKQ---LYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYSFEYPSLNNSQSFT 1164
             W++EEQFKQ   LYE++DD KRKEFLDDLFSFMQK+G+P+NR+PIMAK VLDLY LY LV++RGGLV+VINKKLW+EI KGL+LPSSITSAAFTLRTQYMKYLYP+ECE   LSTP+ELQAAIDGNRRE RR +Y  +Y +++N    T
Sbjct:  274 GWSFEEQFKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYG-QYEAMHNQMPMT 422

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Fly
Match: retn (gene:FBgn0004795 transcript:FBtr0340030)

HSP 1 Score: 229.565 bits (584), Expect = 2.844e-66
Identity = 104/143 (72.73%), Postives = 125/143 (87.41%), Query Frame = 1

Query:  736 EEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYSFEYPSLNNSQSFT 1164
            E+Q ++LYE++DD KRKEFLDDLFSFMQK+G+P+NR+PIMAK VLDLY LY LV++RGGLV+VINKKLW+EI KGL+LPSSITSAAFTLRTQYMKYLYP+ECE   LSTP+ELQAAIDGNRRE RR +Y  +Y +++N    T
Sbjct:    5 EDQIQELYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYG-QYEAMHNQMPMT 146

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Fly
Match: retn (gene:FBgn0004795 transcript:FBtr0340031)

HSP 1 Score: 223.402 bits (568), Expect = 6.100e-64
Identity = 102/137 (74.45%), Postives = 120/137 (87.59%), Query Frame = 1

Query:  754 LYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYSFEYPSLNNSQSFT 1164
            LYE++DD KRKEFLDDLFSFMQK+G+P+NR+PIMAK VLDLY LY LV++RGGLV+VINKKLW+EI KGL+LPSSITSAAFTLRTQYMKYLYP+ECE   LSTP+ELQAAIDGNRRE RR +Y  +Y +++N    T
Sbjct:   30 LYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYG-QYEAMHNQMPMT 165

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Zebrafish
Match: arid3c (AT rich interactive domain 3C (BRIGHT-like) [Source:NCBI gene;Acc:569444])

HSP 1 Score: 248.825 bits (634), Expect = 6.492e-74
Identity = 113/140 (80.71%), Postives = 121/140 (86.43%), Query Frame = 1

Query:  706 ADGNVQNWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            A      W YEEQFKQLYEL DD KRKEFLDDLFSFMQK+G+PVNRIPIMAKQVLDLYTLYKLV  +GGLVEVINKK+WREITKGLNLP+SITSAAFTLRTQYMKYLYP+ECE   LS+P ELQAAID NRRE RR +Y 
Sbjct:  210 AQSQHHEWTYEEQFKQLYELDDDEKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYTLYKLVTEKGGLVEVINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSSPGELQAAIDSNRREGRRQSYG 349

[Close]

Query:  706 ADGNVQNWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            A      W YEEQFKQLYEL DD KRKEFLDDLFSFMQK+G+PVNRIPIMAKQVLDLYTLYKLV  +GGLVEVINKK+WREITKGLNLP+SITSAAFTLRTQYMKYLYP+ECE   LS+P ELQAAID NRRE RR +Y 
Sbjct:  210 AQSQHHEWTYEEQFKQLYELDDDEKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYTLYKLVTEKGGLVEVINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSSPGELQAAIDSNRREGRRQSYG 349

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Zebrafish
Match: arid3a (AT rich interactive domain 3A (BRIGHT-like) [Source:ZFIN;Acc:ZDB-GENE-140106-97])

HSP 1 Score: 236.113 bits (601), Expect = 1.114e-69
Identity = 107/134 (79.85%), Postives = 117/134 (87.31%), Query Frame = 1

Query:  724 NWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            +W YEEQF+QLYEL  D KRKEFLDDLFSFMQKKG+PVNRIPIMAKQVLDLY LY+LV  +GGLVEVINKKLWREITKGLNLP+SITSAAFTLRTQYMKYLY +ECE   LS P+EL+AAID NRRE RR  + 
Sbjct:  186 DWTYEEQFRQLYELDSDPKRKEFLDDLFSFMQKKGTPVNRIPIMAKQVLDLYMLYQLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYTYECEKRALSNPNELKAAIDSNRREGRRQGFG 319

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Zebrafish
Match: arid3c (AT rich interactive domain 3C (BRIGHT-like) [Source:NCBI gene;Acc:569444])

HSP 1 Score: 233.802 bits (595), Expect = 4.573e-68
Identity = 112/162 (69.14%), Postives = 120/162 (74.07%), Query Frame = 1

Query:  727 WNYEEQFKQ-----------------------------LYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            W YEEQFKQ                             LYEL DD KRKEFLDDLFSFMQK+G+PVNRIPIMAKQVLDLYTLYKLV  +GGLVEVINKK+WREITKGLNLP+SITSAAFTLRTQYMKYLYP+ECE   LS+P ELQAAID NRRE RR +Y 
Sbjct:  217 WTYEEQFKQSGQGSGPGRKLKDSSVAFGGGGSSSLIQELYELDDDEKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYTLYKLVTEKGGLVEVINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSSPGELQAAIDSNRREGRRQSYG 378

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Zebrafish
Match: arid3b (AT rich interactive domain 3B (BRIGHT-like) [Source:ZFIN;Acc:ZDB-GENE-070209-182])

HSP 1 Score: 233.032 bits (593), Expect = 1.213e-67
Identity = 106/142 (74.65%), Postives = 117/142 (82.39%), Query Frame = 1

Query:  700 ESADGNVQNWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            E  DG          F +LYEL +D KRKEFLDDLF++MQK+G+PVNRIPIMAKQVLDLY LYKLV  +GGLVEVINKK+WREITKGLNLP+SITSAAFTLRTQYMKYLYP+ECE   LS+P ELQAAID NRRE RRP YS
Sbjct:  246 EEGDGGRSRGEASRDFAKLYELDNDPKRKEFLDDLFAYMQKRGTPVNRIPIMAKQVLDLYMLYKLVTEKGGLVEVINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKKGLSSPGELQAAIDSNRREGRRPGYS 387

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Xenopus
Match: btf3 (basic transcription factor 3 [Source:Xenbase;Acc:XB-GENE-985803])

HSP 1 Score: 239.965 bits (611), Expect = 8.511e-71
Identity = 109/134 (81.34%), Postives = 118/134 (88.06%), Query Frame = 1

Query:  724 NWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            +W YEEQFKQLYEL  D KRKEFLDDLFSFMQK+G+PVNRIPIMAKQVLDLY LY LV  +GGLVEVINKKLWREITKGLNLP+SITSAAFTLRTQYMKYLYP+ECE   LS P+ELQAAID NRRE RR ++ 
Sbjct:  196 DWTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNRREGRRQSFG 329

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Xenopus
Match: kmt2a (lysine methyltransferase 2A [Source:Xenbase;Acc:XB-GENE-922912])

HSP 1 Score: 238.039 bits (606), Expect = 2.864e-70
Identity = 118/194 (60.82%), Postives = 140/194 (72.16%), Query Frame = 1

Query:  703 SADGNVQNWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTY---SFEY-PSLNNSQSFTGQN------LGFH------HSGNSGNTPIGSMPSRL 1236
            ++ GN+   N EE  KQLYEL  D KRKEFLDDLF FMQKKG+P++RIPIMAKQ+LDLY LYKLV  +GGLVEVINKK+WREITKGLNLP+SITSAAFTLRTQYMKYLY +ECE   LS+P+ELQAAIDGNRRE RRP+Y   +F Y P+   +    G N      +G H       +   G+  +G M  R+
Sbjct:  179 ASPGNLHKQNMEEHIKQLYELDSDPKRKEFLDDLFMFMQKKGTPISRIPIMAKQLLDLYMLYKLVTEKGGLVEVINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYLYECEKKSLSSPAELQAAIDGNRREGRRPSYGSSTFSYSPTPQGTSGLLGANKVPVAMMGGHTRISPVTTLKKGDNAVGLMGGRM 372

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Xenopus
Match: kmt2a (lysine methyltransferase 2A [Source:Xenbase;Acc:XB-GENE-922912])

HSP 1 Score: 226.098 bits (575), Expect = 1.442e-65
Identity = 112/180 (62.22%), Postives = 132/180 (73.33%), Query Frame = 1

Query:  745 FKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTY---SFEY-PSLNNSQSFTGQN------LGFH------HSGNSGNTPIGSMPSRL 1236
            F +LYEL  D KRKEFLDDLF FMQKKG+P++RIPIMAKQ+LDLY LYKLV  +GGLVEVINKK+WREITKGLNLP+SITSAAFTLRTQYMKYLY +ECE   LS+P+ELQAAIDGNRRE RRP+Y   +F Y P+   +    G N      +G H       +   G+  +G M  R+
Sbjct:  207 FAKLYELDSDPKRKEFLDDLFMFMQKKGTPISRIPIMAKQLLDLYMLYKLVTEKGGLVEVINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYLYECEKKSLSSPAELQAAIDGNRREGRRPSYGSSTFSYSPTPQGTSGLLGANKVPVAMMGGHTRISPVTTLKKGDNAVGLMGGRM 386

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Xenopus
Match: kmt2a (lysine methyltransferase 2A [Source:Xenbase;Acc:XB-GENE-922912])

HSP 1 Score: 226.098 bits (575), Expect = 1.869e-65
Identity = 112/180 (62.22%), Postives = 132/180 (73.33%), Query Frame = 1

Query:  745 FKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTY---SFEY-PSLNNSQSFTGQN------LGFH------HSGNSGNTPIGSMPSRL 1236
            F +LYEL  D KRKEFLDDLF FMQKKG+P++RIPIMAKQ+LDLY LYKLV  +GGLVEVINKK+WREITKGLNLP+SITSAAFTLRTQYMKYLY +ECE   LS+P+ELQAAIDGNRRE RRP+Y   +F Y P+   +    G N      +G H       +   G+  +G M  R+
Sbjct:  215 FAKLYELDSDPKRKEFLDDLFMFMQKKGTPISRIPIMAKQLLDLYMLYKLVTEKGGLVEVINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYLYECEKKSLSSPAELQAAIDGNRREGRRPSYGSSTFSYSPTPQGTSGLLGANKVPVAMMGGHTRISPVTTLKKGDNAVGLMGGRM 394

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Xenopus
Match: ARID1B (AT-rich interaction domain 1B [Source:NCBI gene;Acc:100493908])

HSP 1 Score: 88.5817 bits (218), Expect = 1.878e-17
Identity = 42/102 (41.18%), Postives = 69/102 (67.65%), Query Frame = 1

Query:  739 EQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECE 1044
            E+  +LYEL ++ +RK ++D   +FM+++G+PV  +P + K+ LDL  LY  V   GGL +V   K WRE++  LN+  + +SAA +L+ QY++YL+ FEC+
Sbjct: 1013 EKITKLYELGNEPERKMWVDRYLTFMEERGTPVANLPAVGKKPLDLVRLYFCVKEIGGLAQVNKNKKWRELSSNLNV-GTSSSAASSLKKQYIQYLFAFECK 1113

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Mouse
Match: Arid3c (AT rich interactive domain 3C (BRIGHT-like) [Source:MGI Symbol;Acc:MGI:3650624])

HSP 1 Score: 239.195 bits (609), Expect = 1.911e-72
Identity = 106/151 (70.20%), Postives = 126/151 (83.44%), Query Frame = 1

Query:  673 ARIDDSDARESADGNVQNWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            AR  +S + +S       W YEEQFKQLYEL  D KRKEFLDDLFSFMQK+G+PVNR+PIMAKQVLDLY L++LV ++GGLVEVIN+K+WRE+T+GL+LP++ITSAAFTLRTQYMKYLYP+ECE   LS+P ELQAAID NRRE RR  Y+
Sbjct:   77 ARCPNSPSSQSPGIQPHEWTYEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYT 227

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Mouse
Match: Arid3c (AT rich interactive domain 3C (BRIGHT-like) [Source:MGI Symbol;Acc:MGI:3650624])

HSP 1 Score: 239.195 bits (609), Expect = 5.493e-72
Identity = 106/151 (70.20%), Postives = 126/151 (83.44%), Query Frame = 1

Query:  673 ARIDDSDARESADGNVQNWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            AR  +S + +S       W YEEQFKQLYEL  D KRKEFLDDLFSFMQK+G+PVNR+PIMAKQVLDLY L++LV ++GGLVEVIN+K+WRE+T+GL+LP++ITSAAFTLRTQYMKYLYP+ECE   LS+P ELQAAID NRRE RR  Y+
Sbjct:   77 ARCPNSPSSQSPGIQPHEWTYEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYT 227

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Mouse
Match: Arid3c (AT rich interactive domain 3C (BRIGHT-like) [Source:MGI Symbol;Acc:MGI:3650624])

HSP 1 Score: 239.195 bits (609), Expect = 5.493e-72
Identity = 106/151 (70.20%), Postives = 126/151 (83.44%), Query Frame = 1

Query:  673 ARIDDSDARESADGNVQNWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            AR  +S + +S       W YEEQFKQLYEL  D KRKEFLDDLFSFMQK+G+PVNR+PIMAKQVLDLY L++LV ++GGLVEVIN+K+WRE+T+GL+LP++ITSAAFTLRTQYMKYLYP+ECE   LS+P ELQAAID NRRE RR  Y+
Sbjct:   77 ARCPNSPSSQSPGIQPHEWTYEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYT 227

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Mouse
Match: Arid3a (AT rich interactive domain 3A (BRIGHT-like) [Source:MGI Symbol;Acc:MGI:1328360])

HSP 1 Score: 238.81 bits (608), Expect = 6.565e-70
Identity = 107/134 (79.85%), Postives = 119/134 (88.81%), Query Frame = 1

Query:  724 NWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            +W +EEQFKQLYEL  D KRKEFLDDLFSFMQK+G+PVNRIPIMAKQVLDL+ LY LV  +GGLVEVINKKLWREITKGLNLP+SITSAAFTLRTQYMKYLYP+ECE   LS+P+ELQAAID NRRE RR ++ 
Sbjct:  227 DWTFEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECERRGLSSPNELQAAIDSNRREGRRQSFG 360

[Close]

Query:  724 NWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            +W +EEQFKQLYEL  D KRKEFLDDLFSFMQK+G+PVNRIPIMAKQVLDL+ LY LV  +GGLVEVINKKLWREITKGLNLP+SITSAAFTLRTQYMKYLYP+ECE   LS+P+ELQAAID NRRE RR ++ 
Sbjct:  227 DWTFEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECERRGLSSPNELQAAIDSNRREGRRQSFG 360

[Close]

BLAST of AT rich interactive domain containing protein vs. UniProt/SwissProt
Match: sp|Q4H3P5|DRI_CIOIN (Protein dead ringer homolog OS=Ciona intestinalis OX=7719 GN=Ci-DRIL1/2 PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 4.930e-79
Identity = 126/168 (75.00%), Postives = 139/168 (82.74%), Query Frame = 1

Query:  703 SADGNVQNWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS---FEYPSLNNSQSFTGQNLGF-HHSG 1194
            S +G+ Q W YEEQFKQLYE+ DD KRKEFLDDLFSFMQK+G+PVNRIPIMAKQVLDLY LY+LVV +GGLVEVINKK+WREITKGLNLPSSITSAAFTLRTQYMKYLYPFECE  KLS PSELQAAI+GNRRE RRP+YS   F Y    ++   T     F HH+G
Sbjct:  226 SCNGSQQEWTYEEQFKQLYEIDDDIKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYQLYRLVVEKGGLVEVINKKIWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECEREKLSVPSELQAAIEGNRREGRRPSYSSHMFSYSPNTSANMLTPPKFPFAHHNG 393

[Close]

BLAST of AT rich interactive domain containing protein vs. UniProt/SwissProt
Match: sp|Q8MQH7|DRI_STRPU (Protein dead ringer homolog OS=Strongylocentrotus purpuratus OX=7668 GN=dri PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.918e-76
Identity = 127/190 (66.84%), Postives = 147/190 (77.37%), Query Frame = 1

Query:  673 ARIDDSDARESADGNVQNWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYSFEYPSLNNSQSFTGQNLGFHHSGNSGNTPIGSMPSRLFP 1242
            A ++D D     D     W++EEQFKQLYELS D KRKEFLDDLFS+MQK+G+PVNRIPIMAKQVLDLY LY LVV++GGLVEVINKK WREITKGLNLP+SITSAAFTLRTQYMKYLYP+ECE   LS+PSELQ+AIDGNRRE RRP+Y    P ++      G +L +HH G   +TP GS P  + P
Sbjct:  173 AGLEDRDG----DKPQTEWSFEEQFKQLYELSTDSKRKEFLDDLFSYMQKRGTPVNRIPIMAKQVLDLYELYNLVVAKGGLVEVINKKQWREITKGLNLPASITSAAFTLRTQYMKYLYPYECEKKGLSSPSELQSAIDGNRREGRRPSY--HSPHMHPR----GPSLAYHH-GLDLHTPSGSPPPTMIP 351

[Close]

BLAST of AT rich interactive domain containing protein vs. UniProt/SwissProt
Match: sp|A2BEA6|ARI3A_DANRE (AT-rich interactive domain-containing protein 3A OS=Danio rerio OX=7955 GN=arid3a PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 4.900e-73
Identity = 113/140 (80.71%), Postives = 121/140 (86.43%), Query Frame = 1

Query:  706 ADGNVQNWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            A      W YEEQFKQLYEL DD KRKEFLDDLFSFMQK+G+PVNRIPIMAKQVLDLYTLYKLV  +GGLVEVINKK+WREITKGLNLP+SITSAAFTLRTQYMKYLYP+ECE   LS+P ELQAAID NRRE RR +Y 
Sbjct:  210 AQSQHHEWTYEEQFKQLYELDDDEKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYTLYKLVTEKGGLVEVINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSSPGELQAAIDSNRREGRRQSYG 349

[Close]

BLAST of AT rich interactive domain containing protein vs. UniProt/SwissProt
Match: sp|A6PWV5|ARI3C_MOUSE (AT-rich interactive domain-containing protein 3C OS=Mus musculus OX=10090 GN=Arid3c PE=2 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 3.842e-71
Identity = 106/151 (70.20%), Postives = 126/151 (83.44%), Query Frame = 1

Query:  673 ARIDDSDARESADGNVQNWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            AR  +S + +S       W YEEQFKQLYEL  D KRKEFLDDLFSFMQK+G+PVNR+PIMAKQVLDLY L++LV ++GGLVEVIN+K+WRE+T+GL+LP++ITSAAFTLRTQYMKYLYP+ECE   LS+P ELQAAID NRRE RR  Y+
Sbjct:   77 ARCPNSPSSQSPGIQPHEWTYEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYT 227

[Close]

BLAST of AT rich interactive domain containing protein vs. UniProt/SwissProt
Match: sp|Q6GQD7|ARI3A_XENLA (AT-rich interactive domain-containing protein 3A OS=Xenopus laevis OX=8355 GN=arid3a PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 2.167e-70
Identity = 109/134 (81.34%), Postives = 118/134 (88.06%), Query Frame = 1

Query:  724 NWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            +W YEEQFKQLYEL  D KRKEFLDDLFSFMQK+G+PVNRIPIMAKQVLDLY LY LV  +GGLVEVINKKLWREITKGLNLP+SITSAAFTLRTQYMKYLYP+ECE   LS P+ELQAAID NRRE RR ++ 
Sbjct:  193 DWTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNRREGRRQSFG 326

[Close]

BLAST of AT rich interactive domain containing protein vs. TrEMBL
Match: A0A0X3P4Y0 (AT-rich interactive domain-containing protein 3A OS=Schistocephalus solidus OX=70667 GN=ARI3A PE=4 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 2.432e-77
Identity = 131/174 (75.29%), Postives = 143/174 (82.18%), Query Frame = 1

Query:  700 ESADG---NVQNWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYSFEYPSLNNSQSFTGQNLGFHHSGNSGNTP 1212
            E  DG   +  +W ++EQFKQLYEL+ D KRKEFLD+LFSFMQK+GSPVNRIPIMAKQVLDLY LY+LVV+RGGLVEVINKKLWREITKGL LPSSITSAAFTLRTQYMKYLYP+ECE L LSTPSELQAAIDGNRREARR +YSFEYP L       G+  G   SGN  N P
Sbjct:  523 EGVDGTESSGHHWTFQEQFKQLYELTSDPKRKEFLDELFSFMQKRGSPVNRIPIMAKQVLDLYELYRLVVTRGGLVEVINKKLWREITKGLQLPSSITSAAFTLRTQYMKYLYPYECEKLGLSTPSELQAAIDGNRREARRSSYSFEYPML-----IAGRGGGAPASGNPPNAP 691

[Close]

BLAST of AT rich interactive domain containing protein vs. TrEMBL
Match: A0A0X3PYK6 (ARID domain-containing protein OS=Schistocephalus solidus OX=70667 GN=TR114487 PE=4 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 3.063e-77
Identity = 131/178 (73.60%), Postives = 145/178 (81.46%), Query Frame = 1

Query:  688 SDARESADG---NVQNWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYSFEYPSLNNSQSFTGQNLGFHHSGNSGNTP 1212
            + + E  DG   +  +W ++EQFKQLYEL+ D KRKEFLD+LFSFMQK+GSPVNRIPIMAKQVLDLY LY+LVV+RGGLVEVINKKLWREITKGL LPSSITSAAFTLRTQYMKYLYP+ECE L LSTPSELQAAIDGNRREARR +YSFEYP L       G+  G   SGN  N P
Sbjct:  533 ASSTEGVDGTESSGHHWTFQEQFKQLYELTSDPKRKEFLDELFSFMQKRGSPVNRIPIMAKQVLDLYELYRLVVTRGGLVEVINKKLWREITKGLQLPSSITSAAFTLRTQYMKYLYPYECEKLGLSTPSELQAAIDGNRREARRSSYSFEYPML-----IAGRGGGAPASGNPPNAP 705

[Close]

BLAST of AT rich interactive domain containing protein vs. TrEMBL
Match: A0A1S3JVI6 (AT-rich interactive domain-containing protein 3A isoform X2 OS=Lingula unguis OX=7574 GN=LOC106176532 PE=4 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.371e-76
Identity = 117/141 (82.98%), Postives = 130/141 (92.20%), Query Frame = 1

Query:  718 VQNWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYSFEYPS 1140
              +W +EEQFKQLYELSDD KRKEFLD+LF +MQK+G+PVNRIPIMAKQ LDLY L++LVVS+GGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECE LKLSTPSELQAAIDGNRRE RRP+Y +++ S
Sbjct:  164 AHHWTFEEQFKQLYELSDDSKRKEFLDELFDYMQKRGTPVNRIPIMAKQTLDLYELFRLVVSKGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECEKLKLSTPSELQAAIDGNRREGRRPSYGYDFAS 304

[Close]

BLAST of AT rich interactive domain containing protein vs. TrEMBL
Match: A0A1W5BJN7 (protein dead ringer homolog isoform X1 OS=Ciona intestinalis OX=7719 GN=ci-dril1/2 PE=4 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 1.426e-76
Identity = 126/168 (75.00%), Postives = 139/168 (82.74%), Query Frame = 1

Query:  703 SADGNVQNWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS---FEYPSLNNSQSFTGQNLGF-HHSG 1194
            S +G+ Q W YEEQFKQLYE+ DD KRKEFLDDLFSFMQK+G+PVNRIPIMAKQVLDLY LY+LVV +GGLVEVINKK+WREITKGLNLPSSITSAAFTLRTQYMKYLYPFECE  KLS PSELQAAI+GNRRE RRP+YS   F Y    ++   T     F HH+G
Sbjct:  226 SCNGSQQEWTYEEQFKQLYEIDDDIKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYQLYRLVVEKGGLVEVINKKIWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECEREKLSVPSELQAAIEGNRREGRRPSYSSHMFSYSPNTSANMLTPPKFPFAHHNG 393

[Close]

BLAST of AT rich interactive domain containing protein vs. TrEMBL
Match: A0A1W5BQQ2 (protein dead ringer homolog isoform X3 OS=Ciona intestinalis OX=7719 GN=ci-dril1/2 PE=4 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 1.482e-76
Identity = 126/168 (75.00%), Postives = 139/168 (82.74%), Query Frame = 1

Query:  703 SADGNVQNWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS---FEYPSLNNSQSFTGQNLGF-HHSG 1194
            S +G+ Q W YEEQFKQLYE+ DD KRKEFLDDLFSFMQK+G+PVNRIPIMAKQVLDLY LY+LVV +GGLVEVINKK+WREITKGLNLPSSITSAAFTLRTQYMKYLYPFECE  KLS PSELQAAI+GNRRE RRP+YS   F Y    ++   T     F HH+G
Sbjct:  226 SCNGSQQEWTYEEQFKQLYEIDDDIKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYQLYRLVVEKGGLVEVINKKIWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECEREKLSVPSELQAAIEGNRREGRRPSYSSHMFSYSPNTSANMLTPPKFPFAHHNG 393

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Cavefish
Match: arid3c (AT-rich interactive domain-containing protein 3A-like [Source:NCBI gene;Acc:103046366])

HSP 1 Score: 247.669 bits (631), Expect = 1.439e-73
Identity = 112/133 (84.21%), Postives = 120/133 (90.23%), Query Frame = 1

Query:  727 WNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            W YEEQFKQLYEL DD KRKEFLDDLFSFMQK+G+PVNRIPIMAKQVLDLYTLYKLV  +GGLVEVINKK+WREITKGLNLP+SITSAAFTLRTQYMKYLYP+ECE   LS+P ELQAAID NRRE RR +Y 
Sbjct:  216 WTYEEQFKQLYELDDDEKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYTLYKLVTEKGGLVEVINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSSPGELQAAIDSNRREGRRQSYG 348

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Cavefish
Match: arid3c (AT-rich interactive domain-containing protein 3A-like [Source:NCBI gene;Acc:103046366])

HSP 1 Score: 247.669 bits (631), Expect = 3.391e-73
Identity = 112/133 (84.21%), Postives = 120/133 (90.23%), Query Frame = 1

Query:  727 WNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            W YEEQFKQLYEL DD KRKEFLDDLFSFMQK+G+PVNRIPIMAKQVLDLYTLYKLV  +GGLVEVINKK+WREITKGLNLP+SITSAAFTLRTQYMKYLYP+ECE   LS+P ELQAAID NRRE RR +Y 
Sbjct:  249 WTYEEQFKQLYELDDDEKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYTLYKLVTEKGGLVEVINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSSPGELQAAIDSNRREGRRQSYG 381

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Cavefish
Match: arid3a (AT-rich interaction domain 3A [Source:NCBI gene;Acc:103023992])

HSP 1 Score: 236.498 bits (602), Expect = 1.475e-69
Identity = 113/167 (67.66%), Postives = 132/167 (79.04%), Query Frame = 1

Query:  724 NWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS-FEY-----PSLNNSQSFTGQNLGFHHSGNSGN 1206
            +W YEEQF+QLYEL  + KRKEFLDDLF+FMQK+G+PVNRIPIMAKQVLDLY LY+LV  +GGLVEVINKKLWREITKGLNLP+SITSAAFTLRTQYMKYLYP+EC+   LS P+ELQAAID NRRE RR   S F Y     P++ +S   +  N+G   + N  +
Sbjct:  206 DWTYEEQFRQLYELDSNPKRKEFLDDLFTFMQKRGTPVNRIPIMAKQVLDLYMLYQLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECDKRGLSNPNELQAAIDSNRREGRRQGSSLFIYSPNGTPTMLSSTKLSMPNIGLSMATNGAS 372

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Cavefish
Match: arid3b (AT-rich interactive domain-containing protein 3A-like [Source:NCBI gene;Acc:103045635])

HSP 1 Score: 236.498 bits (602), Expect = 3.695e-69
Identity = 106/137 (77.37%), Postives = 119/137 (86.86%), Query Frame = 1

Query:  715 NVQNWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
             + +W+++E  KQLYEL +D  RKEFLDDLF FMQK+G+PVNRIPIMAKQVLDLY LYKLV  +GGLVEVINKK+WREITKGLNLP+SITSAAFTLRTQYMKYLYP+ECE   LS+P ELQAAID NRRE RRP YS
Sbjct:  230 GLGDWSFDESIKQLYELDNDPNRKEFLDDLFLFMQKRGTPVNRIPIMAKQVLDLYKLYKLVTEKGGLVEVINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKKGLSSPGELQAAIDSNRREGRRPGYS 366

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Cavefish
Match: arid3c (AT-rich interactive domain-containing protein 3A-like [Source:NCBI gene;Acc:103046366])

HSP 1 Score: 231.876 bits (590), Expect = 1.680e-67
Identity = 112/163 (68.71%), Postives = 120/163 (73.62%), Query Frame = 1

Query:  727 WNYEEQFKQ------------------------------LYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            W YEEQFKQ                              LYEL DD KRKEFLDDLFSFMQK+G+PVNRIPIMAKQVLDLYTLYKLV  +GGLVEVINKK+WREITKGLNLP+SITSAAFTLRTQYMKYLYP+ECE   LS+P ELQAAID NRRE RR +Y 
Sbjct:  192 WTYEEQFKQSGKGSGPERKLGNSSVAFGDAGGSSSLIQKLYELDDDEKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYTLYKLVTEKGGLVEVINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSSPGELQAAIDSNRREGRRQSYG 354

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Sea Lamprey
Match: arid1b (AT rich interactive domain 1B (SWI1-like) [Source:ZFIN;Acc:ZDB-GENE-030131-4459])

HSP 1 Score: 83.5741 bits (205), Expect = 7.088e-17
Identity = 41/109 (37.61%), Postives = 68/109 (62.39%), Query Frame = 1

Query:  739 EQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTP 1065
            E   +LYEL  + +R+ ++D    FM+++GSPV  +P + K  LDLY LY    + GG V+V  KK WRE++  L +  + +S+A +L+ QY+++L+ FEC+  +   P
Sbjct:   60 ESIMRLYELGPEPERRLWVDRYLGFMEQRGSPVALLPAVGKNPLDLYRLYASAKAYGGFVQVNKKKKWRELSTQLAV-GTSSSSASSLKKQYIQFLFAFECKTERGEEP 167

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006350.1 (pep scaffold:Pmarinus_7.0:GL476511:37387:53882:1 gene:ENSPMAG00000005734.1 transcript:ENSPMAT00000006350.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 78.9518 bits (193), Expect = 1.280e-15
Identity = 39/122 (31.97%), Postives = 69/122 (56.56%), Query Frame = 1

Query:  781 RKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFE--CENLKLSTPSELQAAIDGNRREARRPTYSFEYPS 1140
            R  FL  L+ FM+ +G+P+NR P++  + L+L+ LY+LV  RGG   + +   W+++ K L +P   ++A+  +++ Y KYL+ FE  C ++++   S   A     R+  RR     E P+
Sbjct:  312 RDNFLQQLYQFMENRGTPINRPPVLCYRRLNLFKLYRLVQKRGGSTGIKSGTTWKQVYKELGVPVLNSAASHNIKSTYRKYLFGFEEYCRSVRIRFRSVEYAMEAEGRQVGRRTARRREAPA 433

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Sea Lamprey
Match: arid4a (AT rich interactive domain 4A (RBP1-like) [Source:ZFIN;Acc:ZDB-GENE-050809-105])

HSP 1 Score: 75.8702 bits (185), Expect = 1.580e-14
Identity = 32/83 (38.55%), Postives = 54/83 (65.06%), Query Frame = 1

Query:  790 FLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFE 1038
            FL  L+ FM  +G+P+N+ P +  +VL+L+ LY+LV  R G + + +  +W+ I K L LP   ++A++ ++T Y +YLY FE
Sbjct:  327 FLQQLYKFMDDRGTPINKTPFLGYRVLNLFKLYRLVQERDGYICIDSGTVWKLIYKELGLPILNSAASYNVKTAYGRYLYGFE 409

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Sea Lamprey
Match: arid1b (AT rich interactive domain 1B (SWI1-like) [Source:ZFIN;Acc:ZDB-GENE-030131-4459])

HSP 1 Score: 74.3294 bits (181), Expect = 6.360e-14
Identity = 41/109 (37.61%), Postives = 68/109 (62.39%), Query Frame = 1

Query:  739 EQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTP 1065
            E   +LYEL  + +R+ ++D    FM+++GSPV  +P + K  LDLY LY    + GG V+V  KK WRE++  L +  + +S+A +L+ QY+++L+ FEC+  +   P
Sbjct:  515 ESIMRLYELGPEPERRLWVDRYLGFMEQRGSPVALLPAVGKNPLDLYRLYASAKAYGGFVQVNKKKKWRELSTQLAV-GTSSSSASSLKKQYIQFLFAFECKTERGEEP 622

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002952.1 (pep scaffold:Pmarinus_7.0:GL476455:384891:390921:-1 gene:ENSPMAG00000002699.1 transcript:ENSPMAT00000002952.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 61.6178 bits (148), Expect = 5.237e-12
Identity = 27/85 (31.76%), Postives = 49/85 (57.65%), Query Frame = 1

Query:  784 KEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFE 1038
            K FLD ++ FM+++G+P+ R+P +  + ++L+ ++K     GG   V  ++LW+ +   L   S  TSAA   R  Y + + P+E
Sbjct:    2 KAFLDAIYKFMRERGTPIERLPHLGFKQINLWIMFKTTQQLGGYDSVTPQRLWKVVYDELGGDSGSTSAATCTRRHYERLILPYE 86

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Yeast
Match: ECM5 (Subunit of the Snt2C complex; physically associates with Snt2p and Rpd3p; along with Snt2p, recruits Rpd3p to a small number of promoters; also colocalizes with Snt2p, independently of Rpd3p, to promoters of stress response genes in response to oxidative stress; contains ATP/GTP-binding site motif A; null mutant exhibits increased cellular volume, large drooping buds with elongated necks; relative distribution to the nucleus increases upon DNA replication stress [Source:SGD;Acc:S000004788])

HSP 1 Score: 56.6102 bits (135), Expect = 1.127e-8
Identity = 35/86 (40.70%), Postives = 46/86 (53.49%), Query Frame = 1

Query:  787 EFLDDLFSFMQK-KGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFT-LRTQYMKYLYPFE 1038
            +F   L++F  K K S + RIP + K+ LDLY L   V  RGG   V  KKLW +I + L     I S+  T LR+ Y K L  F+
Sbjct:  190 DFYAKLYNFHNKIKKSTLTRIPSIDKRTLDLYRLRSCVKLRGGFNAVCEKKLWAQIGRELGYSGRIMSSLSTSLRSAYAKILLDFD 275

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Nematostella
Match: EDO45584 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RSL0])

HSP 1 Score: 217.624 bits (553), Expect = 3.437e-68
Identity = 99/124 (79.84%), Postives = 112/124 (90.32%), Query Frame = 1

Query:  727 WNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNR 1098
            W +EEQFKQLYEL D+  RK FLDDLF+FMQK+G+PVNR+PIMAKQ LDLY L++LVV +GGLVEVINKK+WREI KGLNLP+S+TSAAFTLRTQYMKYLYP+EC   KLSTPSELQAAIDGNR
Sbjct:    1 WTFEEQFKQLYELGDEPDRKTFLDDLFAFMQKRGTPVNRVPIMAKQTLDLYKLFRLVVDKGGLVEVINKKIWREIIKGLNLPASVTSAAFTLRTQYMKYLYPYECSKRKLSTPSELQAAIDGNR 124

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Nematostella
Match: EDO39168 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SAR7])

HSP 1 Score: 82.0333 bits (201), Expect = 6.742e-18
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 1

Query:  790 FLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFE 1038
            F+  L  F   KG+P  R+P +  Q LDL+ LYK V   GG V+V   K WR+I +  NLPS+ T+AAF LR  Y +YL  +E
Sbjct:   19 FMTKLKKFHDSKGTPFRRLPWLGGQFLDLFLLYKKVTDHGGWVKVTEDKKWRDIAEFFNLPSTCTNAAFALRQHYARYLEAYE 101

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Nematostella
Match: EDO49241 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RGW2])

HSP 1 Score: 60.8474 bits (146), Expect = 1.332e-11
Identity = 28/85 (32.94%), Postives = 50/85 (58.82%), Query Frame = 1

Query:  784 KEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFE 1038
            + F+  L  FM+ + +P+++IP +  + ++L+T+Y      GG   V +K+LWR++   L   ++ITSAA   R  Y + L P+E
Sbjct:    3 RYFMRLLREFMKSRETPISKIPALGFKRVNLWTMYNTTQRLGGYEMVTSKRLWRQVYDALGGSTTITSAATYTRRHYERLLLPYE 87

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Nematostella
Match: EDO38119 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SDQ6])

HSP 1 Score: 59.6918 bits (143), Expect = 1.879e-11
Identity = 29/81 (35.80%), Postives = 47/81 (58.02%), Query Frame = 1

Query:  778 KRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMK 1020
            ++KEF+  L +FM  + +P+ R P++  Q LDLY LY LV   GG+ EV N++ WR +   + +     SA+  ++  Y K
Sbjct:    2 EKKEFMTKLTAFMDDRRTPITRPPVLGNQDLDLYKLYVLVQEFGGMEEVTNQQQWRNLYSKMGIAIMPPSASHHIKMAYKK 82

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Medaka
Match: arid3a (AT-rich interaction domain 3A [Source:NCBI gene;Acc:101162745])

HSP 1 Score: 238.039 bits (606), Expect = 3.867e-70
Identity = 108/133 (81.20%), Postives = 118/133 (88.72%), Query Frame = 1

Query:  727 WNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            W YEEQF+QLYEL  D KRKEFLDDLFSFMQK+G+PVNRIPIMAKQVLDLY LYKLV  +GGLVEVINKKLWREITKGLNLP+SITSAAFTLRTQYMKYLYP+EC+   LS P+ELQAAID NRRE RR ++ 
Sbjct:  196 WTYEEQFRQLYELDADPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYKLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECDKRGLSNPNELQAAIDSNRREGRRQSFG 328

[Close]

Query:  727 WNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            W YEEQF+QLYEL  D KRKEFLDDLFSFMQK+G+PVNRIPIMAKQVLDLY LYKLV  +GGLVEVINKKLWREITKGLNLP+SITSAAFTLRTQYMKYLYP+EC+   LS P+ELQAAID NRRE RR ++ 
Sbjct:  196 WTYEEQFRQLYELDADPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYKLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECDKRGLSNPNELQAAIDSNRREGRRQSFG 328

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Medaka
Match: arid3a (AT-rich interaction domain 3A [Source:NCBI gene;Acc:101162745])

HSP 1 Score: 237.654 bits (605), Expect = 5.001e-70
Identity = 108/133 (81.20%), Postives = 118/133 (88.72%), Query Frame = 1

Query:  727 WNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            W YEEQF+QLYEL  D KRKEFLDDLFSFMQK+G+PVNRIPIMAKQVLDLY LYKLV  +GGLVEVINKKLWREITKGLNLP+SITSAAFTLRTQYMKYLYP+EC+   LS P+ELQAAID NRRE RR ++ 
Sbjct:  196 WTYEEQFRQLYELDADPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYKLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECDKRGLSNPNELQAAIDSNRREGRRQSFG 328

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Medaka
Match: arid3c (AT-rich interactive domain-containing protein 3A-like [Source:NCBI gene;Acc:101169462])

HSP 1 Score: 231.491 bits (589), Expect = 1.444e-67
Identity = 110/157 (70.06%), Postives = 120/157 (76.43%), Query Frame = 1

Query:  724 NWNYEEQFKQ-----------------------LYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
             W YEEQFKQ                       LYEL DD KRKEFLDDLFSFMQ++G+PVNRIPIMAKQVLDLY LYKLV  +GGLVEVINKK+WREITKGLNLP+SITSAAFTLRTQYMKYLYP+ECE   LS+P+ELQAAID NRRE RR +Y 
Sbjct:  189 EWTYEEQFKQVSWYRTYAVGRLSSSSMVSFWFQLYELDDDEKRKEFLDDLFSFMQRRGTPVNRIPIMAKQVLDLYMLYKLVTEKGGLVEVINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSSPAELQAAIDSNRREGRRQSYG 345

[Close]

BLAST of AT rich interactive domain containing protein vs. Ensembl Medaka
Match: ENSORLT00000018514.2 (AT-rich interactive domain-containing protein 3B [Source:NCBI gene;Acc:101163802])

HSP 1 Score: 231.106 bits (588), Expect = 4.472e-66
Identity = 107/142 (75.35%), Postives = 118/142 (83.10%), Query Frame = 1

Query:  700 ESADGNVQNWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYS 1125
            + AD N         F +LYEL  D KRKEFLDDLF+FMQK+G+PVNRIPIMAKQVLDLY LYKLV  +GGLVEVINKK+WREITKGLNLP+SITSAAFTLRTQYMKYLYP+ECE   LS+P ELQAAID NRRE RRP+YS
Sbjct:  357 DEADSNRGRGEASRDFAKLYELDSDPKRKEFLDDLFTFMQKRGTPVNRIPIMAKQVLDLYMLYKLVTEKGGLVEVINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECERKGLSSPGELQAAIDSNRREGRRPSYS 498

[Close]

BLAST of AT rich interactive domain containing protein vs. Planmine SMEST
Match: SMESG000013107.1 (SMESG000013107.1)

HSP 1 Score: 1098.19 bits (2839), Expect = 0.000e+0
Identity = 605/608 (99.51%), Postives = 606/608 (99.67%), Query Frame = 1

Query:   55 MSEIISNIESHELDLRTSRCRKRKLIENIADDNFLLPIQKPIDSNVTXXXXXXXXXXXXFVSSIQGNSNKTVTGPFNYNNVFPHHILPLFPIHNRQLFKYSDMNRFMRPGIESSNFNDFHSFISKSTNTSIVSKNSMPNDTSKPGYEMPLVHPSTNNSPSYGSEIIEKFTLNKLTSEKPSNNPELINDDNHSYXXXXXXXXXXXXXARIDDSDARESADGNVQNWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYSFEYPSLNNSQSFTGQNLGFHHSGNSGNTPIGSMPSRLFPSIFHSXXXXXISLNAPFDAATMLAAAFQRHQQINSCFPHVIPPFLNFASQSKNKIENLKVEAEXXXXXXXXXXXXXXXXHEVPQDNPNKDYFNKLTISPESFEIYNSNLASKPVITPQMAPEYQPDSSQFKMTNETQTSTQINFTDNQKNCSVLPLIGLSSAGSVQXXXXXXXXXXXXXXSKIGLPENSMIVTMEVNGINYHGILFSKSTKN 1878
            MSEIISNIESHELDLRTSRCRKRKLIENIADDNFLLPIQKPIDSNVTPSSNIYSPSIINFVSSIQGNSNKTVTGPFNYNNVFPHHILPLFPIHNRQLFKYSDMNRFMRPGIESSNFNDFHSFISKSTNTSIVSKNSMPNDTSKPGYEMPLVHPSTNNSPSYGSEIIEKFTLNKLTSEKPSNNPELINDDNHSYEDKEEEVEEEYLEARIDDSDARESADGNVQNWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYSFEYPSLNNSQSFTGQNLGFHHSGNSGNTPIGSMPSRLFPSIFHSNNNNNISLNAPFDAATMLAAAFQRHQQINSCFPHVIPPFLNFASQSKNKIENLKVEAEN+IDQKNKISSNKSISHEVPQDN NKDYFNKLTISPESFEIYNSNLASKPVITPQMAPEYQPDSSQFKMTNETQTS QINFTDNQKNCSVLPLIGLSSAGSVQNNGSNIGNITNIPGSKIGLPENSMIVTMEVNGINYHGILFSKSTKN
Sbjct:    1 MSEIISNIESHELDLRTSRCRKRKLIENIADDNFLLPIQKPIDSNVTPSSNIYSPSIINFVSSIQGNSNKTVTGPFNYNNVFPHHILPLFPIHNRQLFKYSDMNRFMRPGIESSNFNDFHSFISKSTNTSIVSKNSMPNDTSKPGYEMPLVHPSTNNSPSYGSEIIEKFTLNKLTSEKPSNNPELINDDNHSYEDKEEEVEEEYLEARIDDSDARESADGNVQNWNYEEQFKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRREARRPTYSFEYPSLNNSQSFTGQNLGFHHSGNSGNTPIGSMPSRLFPSIFHSNNNNNISLNAPFDAATMLAAAFQRHQQINSCFPHVIPPFLNFASQSKNKIENLKVEAENMIDQKNKISSNKSISHEVPQDNLNKDYFNKLTISPESFEIYNSNLASKPVITPQMAPEYQPDSSQFKMTNETQTSKQINFTDNQKNCSVLPLIGLSSAGSVQNNGSNIGNITNIPGSKIGLPENSMIVTMEVNGINYHGILFSKSTKN 608

[Close]

BLAST of AT rich interactive domain containing protein vs. Planmine SMEST
Match: SMESG000074580.1 (SMESG000074580.1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.903e-17
Identity = 38/100 (38.00%), Postives = 64/100 (64.00%), Query Frame = 1

Query:  745 FKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECE 1044
            +++L EL ++ +R  +++    FMQ+  +P++ +P + KQ LDL+ LY  V  RGGL+ V+  K W+EI   +N+ +S  S A+TLR  Y+K L  +EC+
Sbjct:  546 YQKLMELGNEPERGPWIERYLRFMQENNTPLSAVPTVVKQPLDLFRLYHAVRERGGLLNVVKTKRWKEICLIVNVNAS-ASGAYTLRRNYIKCLLDYECK 644

[Close]

BLAST of AT rich interactive domain containing protein vs. Planmine SMEST
Match: SMESG000074580.1 (SMESG000074580.1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.034e-17
Identity = 38/100 (38.00%), Postives = 64/100 (64.00%), Query Frame = 1

Query:  745 FKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECE 1044
            +++L EL ++ +R  +++    FMQ+  +P++ +P + KQ LDL+ LY  V  RGGL+ V+  K W+EI   +N+ +S  S A+TLR  Y+K L  +EC+
Sbjct:  550 YQKLMELGNEPERGPWIERYLRFMQENNTPLSAVPTVVKQPLDLFRLYHAVRERGGLLNVVKTKRWKEICLIVNVNAS-ASGAYTLRRNYIKCLLDYECK 648

[Close]

BLAST of AT rich interactive domain containing protein vs. Planmine SMEST
Match: SMESG000074600.1 (SMESG000074600.1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.029e-16
Identity = 38/100 (38.00%), Postives = 64/100 (64.00%), Query Frame = 1

Query:  745 FKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECE 1044
            +++L EL ++ +R  +++    FMQ+  +P++ +P + KQ LDL+ LY  V  RGGL+ V+  K W+EI   +N+ +S  S A+TLR  Y+K L  +EC+
Sbjct:  103 YQKLMELGNEPERGPWIERYLRFMQENNTPLSAVPTVVKQPLDLFRLYHAVRERGGLLNVVKTKRWKEICLIVNVNAS-ASGAYTLRRNYIKCLLDYECK 201

[Close]

BLAST of AT rich interactive domain containing protein vs. Planmine SMEST
Match: SMESG000074600.1 (SMESG000074600.1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.063e-16
Identity = 38/100 (38.00%), Postives = 64/100 (64.00%), Query Frame = 1

Query:  745 FKQLYELSDDCKRKEFLDDLFSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREITKGLNLPSSITSAAFTLRTQYMKYLYPFECE 1044
            +++L EL ++ +R  +++    FMQ+  +P++ +P + KQ LDL+ LY  V  RGGL+ V+  K W+EI   +N+ +S  S A+TLR  Y+K L  +EC+
Sbjct:  103 YQKLMELGNEPERGPWIERYLRFMQENNTPLSAVPTVVKQPLDLFRLYHAVRERGGLLNVVKTKRWKEICLIVNVNAS-ASGAYTLRRNYIKCLLDYECK 201

The following BLAST results are available for this feature:

BLAST of AT rich interactive domain containing protein vs. Ensembl Human
BLAST of AT rich interactive domain containing protein vs. Ensembl Celegans
BLAST of AT rich interactive domain containing protein vs. Ensembl Fly
BLAST of AT rich interactive domain containing protein vs. Ensembl Zebrafish
BLAST of AT rich interactive domain containing protein vs. Ensembl Xenopus
BLAST of AT rich interactive domain containing protein vs. Ensembl Mouse
BLAST of AT rich interactive domain containing protein vs. UniProt/SwissProt
BLAST of AT rich interactive domain containing protein vs. TrEMBL
BLAST of AT rich interactive domain containing protein vs. Ensembl Cavefish
BLAST of AT rich interactive domain containing protein vs. Ensembl Sea Lamprey
BLAST of AT rich interactive domain containing protein vs. Ensembl Yeast
BLAST of AT rich interactive domain containing protein vs. Ensembl Nematostella
BLAST of AT rich interactive domain containing protein vs. Ensembl Medaka
BLAST of AT rich interactive domain containing protein vs. Planmine SMEST

BLAST of AT rich interactive domain containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ARID3A	5.245e-72	80.60	AT-rich interaction domain 3A [Source:HGNC Symbol;...	[more]
ARID3C	5.828e-70	76.12	AT-rich interaction domain 3C [Source:HGNC Symbol;...	[more]
ARID3A	1.750e-69	71.25	AT-rich interaction domain 3A [Source:HGNC Symbol;...	[more]
ARID3B	1.061e-65	67.09	AT-rich interaction domain 3B [Source:HGNC Symbol;...	[more]
ARID3B	1.263e-65	67.09	AT-rich interaction domain 3B [Source:HGNC Symbol;...	[more]

BLAST of AT rich interactive domain containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
cfi-1	2.560e-66	76.98	AT-rich interactive domain-containing protein cfi-...	[more]
let-526	1.050e-10	29.31	pep chromosome:WBcel235:I:5300901:5313926:-1 gene:...	[more]
let-526	1.050e-10	29.31	pep chromosome:WBcel235:I:5300901:5317392:-1 gene:...	[more]
let-526	1.268e-10	29.31	pep chromosome:WBcel235:I:5300901:5310726:-1 gene:...	[more]
let-526	1.389e-10	29.31	pep chromosome:WBcel235:I:5300901:5313926:-1 gene:...	[more]

BLAST of AT rich interactive domain containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
retn	1.570e-67	72.67	gene:FBgn0004795 transcript:FBtr0340029	[more]
retn	1.637e-67	72.67	gene:FBgn0004795 transcript:FBtr0072072	[more]
retn	1.797e-67	72.67	gene:FBgn0004795 transcript:FBtr0072073	[more]
retn	2.844e-66	72.73	gene:FBgn0004795 transcript:FBtr0340030	[more]
retn	6.100e-64	74.45	gene:FBgn0004795 transcript:FBtr0340031	[more]

BLAST of AT rich interactive domain containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
arid3c	6.492e-74	80.71	AT rich interactive domain 3C (BRIGHT-like) [Sourc...	[more]
arid3c	6.492e-74	80.71	AT rich interactive domain 3C (BRIGHT-like) [Sourc...	[more]
arid3a	1.114e-69	79.85	AT rich interactive domain 3A (BRIGHT-like) [Sourc...	[more]
arid3c	4.573e-68	69.14	AT rich interactive domain 3C (BRIGHT-like) [Sourc...	[more]
arid3b	1.213e-67	74.65	AT rich interactive domain 3B (BRIGHT-like) [Sourc...	[more]

BLAST of AT rich interactive domain containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
btf3	8.511e-71	81.34	basic transcription factor 3 [Source:Xenbase;Acc:X...	[more]
kmt2a	2.864e-70	60.82	lysine methyltransferase 2A [Source:Xenbase;Acc:XB...	[more]
kmt2a	1.442e-65	62.22	lysine methyltransferase 2A [Source:Xenbase;Acc:XB...	[more]
kmt2a	1.869e-65	62.22	lysine methyltransferase 2A [Source:Xenbase;Acc:XB...	[more]
ARID1B	1.878e-17	41.18	AT-rich interaction domain 1B [Source:NCBI gene;Ac...	[more]

BLAST of AT rich interactive domain containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Arid3c	1.911e-72	70.20	AT rich interactive domain 3C (BRIGHT-like) [Sourc...	[more]
Arid3c	5.493e-72	70.20	AT rich interactive domain 3C (BRIGHT-like) [Sourc...	[more]
Arid3c	5.493e-72	70.20	AT rich interactive domain 3C (BRIGHT-like) [Sourc...	[more]
Arid3a	6.565e-70	79.85	AT rich interactive domain 3A (BRIGHT-like) [Sourc...	[more]
Arid3a	6.565e-70	79.85	AT rich interactive domain 3A (BRIGHT-like) [Sourc...	[more]

BLAST of AT rich interactive domain containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q4H3P5\|DRI_CIOIN	4.930e-79	75.00	Protein dead ringer homolog OS=Ciona intestinalis ...	[more]
sp\|Q8MQH7\|DRI_STRPU	2.918e-76	66.84	Protein dead ringer homolog OS=Strongylocentrotus ...	[more]
sp\|A2BEA6\|ARI3A_DANRE	4.900e-73	80.71	AT-rich interactive domain-containing protein 3A O...	[more]
sp\|A6PWV5\|ARI3C_MOUSE	3.842e-71	70.20	AT-rich interactive domain-containing protein 3C O...	[more]
sp\|Q6GQD7\|ARI3A_XENLA	2.167e-70	81.34	AT-rich interactive domain-containing protein 3A O...	[more]

BLAST of AT rich interactive domain containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0X3P4Y0	2.432e-77	75.29	AT-rich interactive domain-containing protein 3A O...	[more]
A0A0X3PYK6	3.063e-77	73.60	ARID domain-containing protein OS=Schistocephalus ...	[more]
A0A1S3JVI6	1.371e-76	82.98	AT-rich interactive domain-containing protein 3A i...	[more]
A0A1W5BJN7	1.426e-76	75.00	protein dead ringer homolog isoform X1 OS=Ciona in...	[more]
A0A1W5BQQ2	1.482e-76	75.00	protein dead ringer homolog isoform X3 OS=Ciona in...	[more]

BLAST of AT rich interactive domain containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
arid3c	1.439e-73	84.21	AT-rich interactive domain-containing protein 3A-l...	[more]
arid3c	3.391e-73	84.21	AT-rich interactive domain-containing protein 3A-l...	[more]
arid3a	1.475e-69	67.66	AT-rich interaction domain 3A [Source:NCBI gene;Ac...	[more]
arid3b	3.695e-69	77.37	AT-rich interactive domain-containing protein 3A-l...	[more]
arid3c	1.680e-67	68.71	AT-rich interactive domain-containing protein 3A-l...	[more]

BLAST of AT rich interactive domain containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5


Match Name	E-value	Identity	Description
arid1b	7.088e-17	37.61	AT rich interactive domain 1B (SWI1-like) [Source:...	[more]
ENSPMAT00000006350.1	1.280e-15	31.97	pep scaffold:Pmarinus_7.0:GL476511:37387:53882:1 g...	[more]
arid4a	1.580e-14	38.55	AT rich interactive domain 4A (RBP1-like) [Source:...	[more]
arid1b	6.360e-14	37.61	AT rich interactive domain 1B (SWI1-like) [Source:...	[more]
ENSPMAT00000002952.1	5.237e-12	31.76	pep scaffold:Pmarinus_7.0:GL476455:384891:390921:-...	[more]

BLAST of AT rich interactive domain containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
ECM5	1.127e-8	40.70	Subunit of the Snt2C complex; physically associate...	[more]

BLAST of AT rich interactive domain containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 4


Match Name	E-value	Identity	Description
EDO45584	3.437e-68	79.84	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO39168	6.742e-18	45.78	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO49241	1.332e-11	32.94	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO38119	1.879e-11	35.80	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of AT rich interactive domain containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
arid3a	3.867e-70	81.20	AT-rich interaction domain 3A [Source:NCBI gene;Ac...	[more]
arid3a	3.867e-70	81.20	AT-rich interaction domain 3A [Source:NCBI gene;Ac...	[more]
arid3a	5.001e-70	81.20	AT-rich interaction domain 3A [Source:NCBI gene;Ac...	[more]
arid3c	1.444e-67	70.06	AT-rich interactive domain-containing protein 3A-l...	[more]
ENSORLT00000018514.2	4.472e-66	75.35	AT-rich interactive domain-containing protein 3B [...	[more]

BLAST of AT rich interactive domain containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000013107.1	0.000e+0	99.51	SMESG000013107.1	[more]
SMESG000074580.1	4.903e-17	38.00	SMESG000074580.1	[more]
SMESG000074580.1	5.034e-17	38.00	SMESG000074580.1	[more]
SMESG000074600.1	1.029e-16	38.00	SMESG000074600.1	[more]
SMESG000074600.1	1.063e-16	38.00	SMESG000074600.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30018722 ID=SMED30018722|Name=AT rich interactive domain containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1906bp
TTTTATAATGTTTTTAGATATCTGTGAAACAAAAATTTGGTATTAAAGCG
TAAAATGTCTGAAATTATATCTAATATAGAATCACACGAATTAGACCTTC
GAACCTCGAGGTGTAGAAAAAGAAAACTTATTGAGAATATTGCCGATGAC
AATTTTTTATTGCCTATTCAAAAACCAATTGATTCAAATGTAACCCCTTC
TTCTAACATTTACTCACCTTCAATAATTAATTTTGTGTCATCAATTCAAG
GTAATTCTAATAAAACTGTAACTGGACCTTTTAATTACAACAATGTTTTC
CCTCATCATATTTTACCACTATTCCCGATTCACAATCGCCAATTGTTCAA
ATATTCTGATATGAATCGATTCATGCGTCCAGGAATAGAATCATCTAACT
TCAATGATTTTCATTCCTTTATTTCAAAATCTACAAACACAAGTATTGTA
AGCAAAAACTCCATGCCTAACGACACTTCAAAACCAGGTTATGAGATGCC
TTTAGTTCACCCATCAACAAACAACTCGCCTTCGTATGGATCTGAAATAA
TTGAAAAATTTACGTTAAACAAATTAACATCTGAAAAACCATCAAATAAT
CCAGAATTAATAAATGATGATAATCATTCATATGAAGACAAAGAAGAAGA
AGTAGAAGAAGAGTATCTTGAAGCAAGAATAGATGACTCCGACGCGAGAG
AATCTGCGGATGGAAACGTTCAAAATTGGAATTATGAAGAACAATTCAAA
CAGCTCTACGAATTGTCTGATGATTGCAAACGAAAAGAGTTTCTCGACGA
TTTATTCAGTTTCATGCAGAAAAAAGGAAGTCCTGTAAATCGAATTCCAA
TAATGGCAAAGCAAGTTCTAGATCTTTACACGCTGTATAAATTGGTAGTG
TCTCGTGGAGGTTTAGTAGAAGTGATAAATAAAAAACTTTGGAGAGAAAT
AACAAAAGGATTAAACTTACCATCTTCCATTACCAGTGCAGCATTTACGT
TACGCACCCAATATATGAAATATTTATATCCATTCGAATGCGAAAATCTT
AAATTAAGCACTCCATCAGAACTGCAAGCCGCTATTGATGGAAACCGGCG
TGAAGCTAGAAGGCCAACATATTCTTTTGAATATCCATCATTAAACAATT
CGCAATCCTTTACGGGACAGAATTTAGGATTCCATCATTCTGGTAATTCT
GGAAACACACCAATAGGTTCAATGCCTTCCCGTTTATTTCCTTCAATATT
TCATTCAAATAATAATAATAATATCTCGTTGAATGCTCCATTCGATGCTG
CCACAATGCTTGCTGCTGCTTTTCAGAGACATCAACAGATTAACAGTTGT
TTTCCGCACGTGATTCCTCCTTTCTTGAATTTTGCGTCACAATCGAAAAA
TAAAATAGAAAATTTAAAAGTAGAAGCAGAAAATATAATCGATCAAAAGA
ACAAAATTTCCTCAAACAAATCAATTAGTCACGAAGTGCCACAAGATAAT
CCTAATAAGGATTATTTCAATAAGCTAACAATTTCTCCAGAATCCTTTGA
AATTTACAATTCAAACCTAGCAAGTAAGCCTGTTATTACCCCTCAAATGG
CACCCGAATATCAACCGGATTCCAGTCAATTCAAAATGACAAATGAAACG
CAAACCTCAACGCAAATAAATTTTACAGACAATCAAAAAAATTGCTCAGT
TCTTCCTCTAATTGGGTTGTCAAGTGCAGGTTCTGTTCAAAATAATGGAT
CTAACATTGGCAACATTACAAATATTCCAGGTTCAAAAATAGGGCTTCCA
GAAAATTCTATGATTGTAACAATGGAAGTAAACGGGATTAATTACCATGG
AATTCTTTTCTCAAAATCCACAAAAAATTGAACTGATTTACTATATGCTT
GTGAAT

protein sequence of SMED30018722-orf-1

>SMED30018722-orf-1 ID=SMED30018722-orf-1|Name=SMED30018722-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=609bp
MSEIISNIESHELDLRTSRCRKRKLIENIADDNFLLPIQKPIDSNVTPSS
NIYSPSIINFVSSIQGNSNKTVTGPFNYNNVFPHHILPLFPIHNRQLFKY
SDMNRFMRPGIESSNFNDFHSFISKSTNTSIVSKNSMPNDTSKPGYEMPL
VHPSTNNSPSYGSEIIEKFTLNKLTSEKPSNNPELINDDNHSYEDKEEEV
EEEYLEARIDDSDARESADGNVQNWNYEEQFKQLYELSDDCKRKEFLDDL
FSFMQKKGSPVNRIPIMAKQVLDLYTLYKLVVSRGGLVEVINKKLWREIT
KGLNLPSSITSAAFTLRTQYMKYLYPFECENLKLSTPSELQAAIDGNRRE
ARRPTYSFEYPSLNNSQSFTGQNLGFHHSGNSGNTPIGSMPSRLFPSIFH
SNNNNNISLNAPFDAATMLAAAFQRHQQINSCFPHVIPPFLNFASQSKNK
IENLKVEAENIIDQKNKISSNKSISHEVPQDNPNKDYFNKLTISPESFEI
YNSNLASKPVITPQMAPEYQPDSSQFKMTNETQTSTQINFTDNQKNCSVL
PLIGLSSAGSVQNNGSNIGNITNIPGSKIGLPENSMIVTMEVNGINYHGI
LFSKSTKN*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **cellular component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000101	muscle cell
PLANA:0002056	medial muscle cell

Vocabulary: **INTERPRO**
Term	Definition
IPR036431	ARID_dom_sf
IPR001606	ARID_dom

Vocabulary: **molecular function**
Term	Definition
GO:0003677	DNA binding

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 190..210
None	No IPR available	COILS	Coil	Coil	coord: 444..471
None	No IPR available	SMART	SM01014	ARID_2	coord: 237..328 e-value: 1.3E-36 score: 137.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..195
None	No IPR available	PANTHER	PTHR15348	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT	coord: 178..356
None	No IPR available	PANTHER	PTHR15348:SF1	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 3A	coord: 178..356
None	No IPR available	CDD	cd16881	ARID_Dri-like	coord: 225..348 e-value: 5.22758E-86 score: 261.754
IPR001606	ARID DNA-binding domain	SMART	SM00501	bright_3	coord: 241..333 e-value: 1.6E-37 score: 140.7
IPR001606	ARID DNA-binding domain	PFAM	PF01388	ARID	coord: 243..328 e-value: 9.3E-20 score: 71.1
IPR001606	ARID DNA-binding domain	PROSITE	PS51011	ARID	coord: 240..332 score: 30.72
IPR036431	ARID DNA-binding domain superfamily	GENE3D	G3DSA:1.10.150.60		coord: 217..353 e-value: 3.3E-57 score: 193.6
IPR036431	ARID DNA-binding domain superfamily	SUPERFAMILY	SSF46774	ARID-like	coord: 222..346