TNF receptor-associated factor
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30018688 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Homology
BLAST of TNF receptor-associated factor vs. Ensembl Human
Match: TRAF6 (TNF receptor associated factor 6 [Source:HGNC Symbol;Acc:HGNC:12036]) HSP 1 Score: 61.6178 bits (148), Expect = 4.162e-9 Identity = 35/120 (29.17%), Postives = 55/120 (45.83%), Query Frame = 3 Query: 918 LNEYEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGC 1277 + Y+ +D L ++ C IC + L+ Q+PCG RFC CI+ + + CP D I L D R+I + VKCP C ++ EL+ H+ H+ C + + C Sbjct: 53 IQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP------VDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELR----HLEDHQAHCEFALMDC 162
BLAST of TNF receptor-associated factor vs. Ensembl Human
Match: TRAF6 (TNF receptor associated factor 6 [Source:HGNC Symbol;Acc:HGNC:12036]) HSP 1 Score: 61.6178 bits (148), Expect = 4.162e-9 Identity = 35/120 (29.17%), Postives = 55/120 (45.83%), Query Frame = 3 Query: 918 LNEYEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGC 1277 + Y+ +D L ++ C IC + L+ Q+PCG RFC CI+ + + CP D I L D R+I + VKCP C ++ EL+ H+ H+ C + + C Sbjct: 53 IQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP------VDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELR----HLEDHQAHCEFALMDC 162
BLAST of TNF receptor-associated factor vs. Ensembl Fly
Match: Traf6 (gene:FBgn0265464 transcript:FBtr0071188) HSP 1 Score: 54.299 bits (129), Expect = 3.625e-7 Identity = 37/153 (24.18%), Postives = 63/153 (41.18%), Query Frame = 3 Query: 942 DSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKAL--CDYRSELQNIGNHISS---------HKESCPYTNIGCQY-PSAHMGLIVEHLHDQIYEHGKLVTESF 1364 + LL + C IC L P + CG RFC C+ ++ CP ++ ++ D+ D R+I Q+K CP + C + + H+ S +E CP+ I C + + EHL + H +L+ ++F Sbjct: 95 EELLDSRYECAICIDWLNEPVLTSCGHRFCRSCLTAWMQKNNQCCP-----MDNKRLSAEHDIFPDNYTRREIEQLKRDCPNSSLGCSVVASPIELHRHLPSCPYRRQQEPQEEKCPFAKIKCDFVGRPETNQLEEHLKADMPHHMQLMLQAF 242
BLAST of TNF receptor-associated factor vs. Ensembl Zebrafish
Match: traf6 (TNF receptor-associated factor 6 [Source:NCBI gene;Acc:554561]) HSP 1 Score: 57.7658 bits (138), Expect = 4.281e-8 Identity = 37/138 (26.81%), Postives = 59/138 (42.75%), Query Frame = 3 Query: 927 YEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEH 1340 Y+ +D L ++ C IC + L++ Q+PCG RFC CI + + CP D + L D R+I + VKC C + EL+ + H+S C + C P + + HL + +H Sbjct: 57 YDVEFDPPLESKYECPICLMGLRSAVQTPCGHRFCDSCIRKSIRDTGQKCP------VDNEVLLEEQLFPDNFAKREILSLTVKCSNFGCSEKMELRQLEKHLS----QCRFATAPC--PQCQESVPISHLDEHKSQH 182
BLAST of TNF receptor-associated factor vs. Ensembl Zebrafish
Match: traf6 (TNF receptor-associated factor 6 [Source:NCBI gene;Acc:554561]) HSP 1 Score: 57.7658 bits (138), Expect = 4.281e-8 Identity = 37/138 (26.81%), Postives = 59/138 (42.75%), Query Frame = 3 Query: 927 YEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEH 1340 Y+ +D L ++ C IC + L++ Q+PCG RFC CI + + CP D + L D R+I + VKC C + EL+ + H+S C + C P + + HL + +H Sbjct: 57 YDVEFDPPLESKYECPICLMGLRSAVQTPCGHRFCDSCIRKSIRDTGQKCP------VDNEVLLEEQLFPDNFAKREILSLTVKCSNFGCSEKMELRQLEKHLS----QCRFATAPC--PQCQESVPISHLDEHKSQH 182
BLAST of TNF receptor-associated factor vs. Ensembl Zebrafish
Match: traf6 (TNF receptor-associated factor 6 [Source:NCBI gene;Acc:554561]) HSP 1 Score: 57.7658 bits (138), Expect = 4.281e-8 Identity = 37/138 (26.81%), Postives = 59/138 (42.75%), Query Frame = 3 Query: 927 YEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEH 1340 Y+ +D L ++ C IC + L++ Q+PCG RFC CI + + CP D + L D R+I + VKC C + EL+ + H+S C + C P + + HL + +H Sbjct: 57 YDVEFDPPLESKYECPICLMGLRSAVQTPCGHRFCDSCIRKSIRDTGQKCP------VDNEVLLEEQLFPDNFAKREILSLTVKCSNFGCSEKMELRQLEKHLS----QCRFATAPC--PQCQESVPISHLDEHKSQH 182
BLAST of TNF receptor-associated factor vs. Ensembl Zebrafish
Match: traf1 (TNF receptor-associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-071120-4]) HSP 1 Score: 57.3806 bits (137), Expect = 6.165e-8 Identity = 43/134 (32.09%), Postives = 65/134 (48.51%), Query Frame = 3 Query: 921 NEYEFAY-----DSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYL--NNKETLCPGLSEDCKDQLINFNGDLHA--------DYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGC 1277 NEY + D + D++LC CN +L Q+ CG R+C+ C V++L NNK+ +C CK + N D D I+++I +KV C C +RS L+N +H S + + NIGC Sbjct: 21 NEYPSGFPQSICDEVPKDKYLCSNCNNVLNKARQTVCGHRYCLAC-VNWLVRNNKDLVC----TKCKGEDSNVESDTSVLTPNQFFNDVAINKEILDLKVHCANQGCPWRSTLKNFEDHQSQCEYALIPCNIGC 149
BLAST of TNF receptor-associated factor vs. Ensembl Zebrafish
Match: traf5 (Tnf receptor-associated factor 5 [Source:ZFIN;Acc:ZDB-GENE-071120-3]) HSP 1 Score: 51.9878 bits (123), Expect = 1.725e-6 Identity = 37/134 (27.61%), Postives = 63/134 (47.01%), Query Frame = 3 Query: 888 NAKYERIWKLLNEYEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCK-DQLINFNGDLHADYVISRKISQVKVKCPKAL-CDYRSELQNIGNHISSHKESCPYTNIGCQY 1283 N++ R W L + + S L +F+C C I+ NP+Q+ CG FC +C+ Y N G S C D + ++ D R++ ++V C A C R L N+ +H+ ++CP+ + C + Sbjct: 15 NSEASRSWDL-DSRTLRFVSRLEQQFICPSCGGIVLNPHQTGCGHIFCAQCVKAYTEN------GGSSKCPLDSIPIKPEEIFQDNCCKRELLNLEVFCTNAPECTQRFSLCNLQDHL----KACPHERVRCSH 137
BLAST of TNF receptor-associated factor vs. Ensembl Xenopus
Match: egf (epidermal growth factor [Source:Xenbase;Acc:XB-GENE-951823]) HSP 1 Score: 58.5362 bits (140), Expect = 4.155e-8 Identity = 34/117 (29.06%), Postives = 52/117 (44.44%), Query Frame = 3 Query: 927 YEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGC 1277 Y+ +D L ++ C IC + L+ Q+PCG RFC CI+ + + CP +E L D R+I ++VKCP C EL+ H+ H C + + C Sbjct: 58 YDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACILKSIRDAGHKCPVDNESL------MENQLFPDNFAKREILSLRVKCPSQGCTETMELR----HLERHLVRCDFAGVEC 164
BLAST of TNF receptor-associated factor vs. Ensembl Mouse
Match: Traf6 (TNF receptor-associated factor 6 [Source:MGI Symbol;Acc:MGI:108072]) HSP 1 Score: 61.2326 bits (147), Expect = 4.234e-9 Identity = 35/120 (29.17%), Postives = 54/120 (45.00%), Query Frame = 3 Query: 918 LNEYEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGC 1277 + Y+ +D L ++ C IC + L+ Q+PCG RFC CI+ + + CP D I L D R+I + VKCP C + EL+ H+ H+ C + + C Sbjct: 53 IQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP------VDNEILLENQLFPDNFAKREILSLTVKCPNKGCLQKMELR----HLEDHQVHCEFALVNC 162
BLAST of TNF receptor-associated factor vs. UniProt/SwissProt
Match: sp|Q6DJN2|TRF6B_XENLA (TNF receptor-associated factor 6-B OS=Xenopus laevis OX=8355 GN=traf6-b PE=2 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 1.584e-9 Identity = 41/135 (30.37%), Postives = 60/135 (44.44%), Query Frame = 3 Query: 927 YEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGC-----QYPSAHMGLIVEH 1316 Y+ +D L ++ C IC + L+ Q+PCG RFC CIV L + CP D I L D R+I +KVKCP C EL+ H+ H C + ++ C +P + + +EH Sbjct: 58 YDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIVKSLRDAGHKCP------VDNEILMENQLFPDNFAKREILSLKVKCPSQGCTETMELR----HLERHLGQCQFASVECSQCQGSFPKSRLEKHMEH 182
BLAST of TNF receptor-associated factor vs. UniProt/SwissProt
Match: sp|Q3MV19|TRF6A_XENLA (TNF receptor-associated factor 6-A OS=Xenopus laevis OX=8355 GN=traf6-a PE=1 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 9.209e-9 Identity = 43/141 (30.50%), Postives = 63/141 (44.68%), Query Frame = 3 Query: 918 LNEYEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEH 1340 + Y+ +D L ++ C IC + L+ Q+PCG RFC CI+ L N CP D I L D R+I ++VKCP C EL+ H+ H C + ++ C S G ++ L D+ EH Sbjct: 55 IQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACILKSLRNAGHKCP------VDNEILMEKQLFPDNFAKREILSLRVKCPNLGCTDTMELR----HLEHHLVQCQFASVEC---SQCQGSFLKLLLDKHMEH 182
BLAST of TNF receptor-associated factor vs. UniProt/SwissProt
Match: sp|A7XUJ6|TRAF6_PIG (TNF receptor-associated factor 6 OS=Sus scrofa OX=9823 GN=TRAF6 PE=2 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 1.339e-8 Identity = 35/120 (29.17%), Postives = 55/120 (45.83%), Query Frame = 3 Query: 918 LNEYEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGC 1277 + Y+ +D L ++ C IC + L+ Q+PCG RFC CI+ + + CP D I L D R+I + VKCP C ++ EL+ H+ H+ C + + C Sbjct: 54 IQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP------VDNEILLENQLFPDNFAKREILSLTVKCPNVGCLHKMELR----HLEDHQAHCEFALMNC 163
BLAST of TNF receptor-associated factor vs. UniProt/SwissProt
Match: sp|B6CJY4|TRAF6_CERAT (TNF receptor-associated factor 6 OS=Cercocebus atys OX=9531 GN=TRAF6 PE=2 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 1.427e-8 Identity = 35/120 (29.17%), Postives = 55/120 (45.83%), Query Frame = 3 Query: 918 LNEYEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGC 1277 + Y+ +D L ++ C IC + L+ Q+PCG RFC CI+ + + CP D I L D R+I + VKCP C ++ EL+ H+ H+ C + + C Sbjct: 53 IQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP------VDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELR----HLEDHQAHCEFALVDC 162
BLAST of TNF receptor-associated factor vs. UniProt/SwissProt
Match: sp|B6CJY5|TRAF6_MACMU (TNF receptor-associated factor 6 OS=Macaca mulatta OX=9544 GN=TRAF6 PE=2 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 1.451e-8 Identity = 35/120 (29.17%), Postives = 55/120 (45.83%), Query Frame = 3 Query: 918 LNEYEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGC 1277 + Y+ +D L ++ C IC + L+ Q+PCG RFC CI+ + + CP D I L D R+I + VKCP C ++ EL+ H+ H+ C + + C Sbjct: 53 IQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP------VDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELR----HLEDHQAHCEFALVDC 162
BLAST of TNF receptor-associated factor vs. TrEMBL
Match: I1ZID8 (TNF receptor associated factor-2 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 8.059e-28 Identity = 56/169 (33.14%), Postives = 99/169 (58.58%), Query Frame = 3 Query: 900 ERIWKLLNEYEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHI---SSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEHGKLVTESFTNLKNEVASLT 1397 E+I +LL Y F + + D C +C +L N QS CGCRFC +CI++Y++ CPG + +CK++ + ++H DY ++RKI++++VKCP+ C EL +I H+ + ++CP+ +GC P + + HL + ++H KL+ + +N++N+ LT Sbjct: 4 EKINRLLITYNFEVEGGVPDNLKCDLCKNLLVNACQSRCGCRFCSKCIMEYVSRGNLYCPGGTSECKEENLTICSNIHTDYRVNRKIAKMRVKCPEETCKVYCELVDIEEHLRLCTMKSQNCPFFVLGCNQPKMVIQDLTNHLQNGTFQHSKLIIDIISNMRNDFFGLT 172 HSP 2 Score: 77.0258 bits (188), Expect = 4.325e-12 Identity = 39/129 (30.23%), Postives = 72/129 (55.81%), Query Frame = 2 Query: 26 SEIIYKIMKENKFEIVNEISRELRCNICNELMIKACSAPCGCRFCSDYIEHYLSGSHKFCPGTSKSCQNKMINYKNDIVIDYISNIRISEISVTCQKQQRQFKDKLVLIAGYFLTCDKRSISCQFNAIG 412 +E I +++ FE+ + L+C++C L++ AC + CGCRFCS I Y+S + +CPG + C+ + + ++I DY N +I+++ V C ++ + +LV I + C +S +C F +G Sbjct: 3 AEKINRLLITYNFEVEGGVPDNLKCDLCKNLLVNACQSRCGCRFCSKCIMEYVSRGNLYCPGGTSECKEENLTICSNIHTDYRVNRKIAKMRVKCPEETCKVYCELVDIEEHLRLCTMKSQNCPFFVLG 131
BLAST of TNF receptor-associated factor vs. TrEMBL
Match: T1E101 (TRAF-6 OS=Dendrocoelum lacteum OX=27895 PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.369e-23 Identity = 88/305 (28.85%), Postives = 148/305 (48.52%), Query Frame = 3 Query: 882 MANAKYERIWKLLNEYEFA-YDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHI---SSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEHGKLVT------------------ESFTNLKNEVASLTLALKHSK--------QELENKDNLLIDLENRLNELQGTREIKIQELTETLDKCKEENVQLSSELRTLKSVSEVFSFNQVRFMKR*RKHL---PIKYETANLGTELTFGINI 1697 M +K + + +LL++Y D ++++ LC++CN ++++ +S CGC +C CI YL+ CPG +CK+ +N GD+ + +S +IS++ VKCP C+Y SEL + H+ + CP IGC+ + +HL DQ+ H +L+ E ++LK EV + AL K +EL NKDN+++ L Q +E+K + +T K SEL+ LKS ++F ++ FMK + + IK + +L E+ FGI + Sbjct: 1 MIPSKLDNVQELLSKYNVKRVDESVNNDLLCILCNKLMRDACESACGCHYCYTCIRIYLSQNHNYCPGDKTECKEDYLNLEGDVFRNIRLSTRISRIVVKCPNIRCNYTSELLRLKEHLDKCTPESVECPCVTIGCEEEPLLKDEMAKHLTDQVLRHTQLIMSFCNELKSEINHNNETTKEDISHLK-EVLRVQKALNDEKTAQMEFLIEELRNKDNMILVLS------QDIQEVKNEMITLLTSK--------ESELKKLKSDIQIFR-QEIEFMKNDLEVVGSTDIKNQVKDLKKEI-FGIKM 288 HSP 2 Score: 73.559 bits (179), Expect = 7.944e-10 Identity = 40/126 (31.75%), Postives = 64/126 (50.79%), Query Frame = 2 Query: 80 ISRELRCNICNELMIKACSAPCGCRFCSDYIEHYLSGSHKFCPGTSKSCQNKMINYKNDIVIDYISNIRISEISVTCQKQQRQFKDKLVLIAGYFLTCDKRSISCQFNAIGYE---VMNDERKAHL 448 ++ +L C +CN+LM AC + CGC +C I YLS +H +CPG C+ +N + D+ + + RIS I V C + + +L+ + + C S+ C IG E ++ DE HL Sbjct: 25 VNNDLLCILCNKLMRDACESACGCHYCYTCIRIYLSQNHNYCPGDKTECKEDYLNLEGDVFRNIRLSTRISRIVVKCPNIRCNYTSELLRLKEHLDKCTPESVECPCVTIGCEEEPLLKDEMAKHL 150
BLAST of TNF receptor-associated factor vs. TrEMBL
Match: A0A182W055 (Uncharacterized protein OS=Anopheles minimus OX=112268 PE=4 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 8.451e-12 Identity = 46/175 (26.29%), Postives = 79/175 (45.14%), Query Frame = 3 Query: 942 DSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKAL---------CDYRSELQNIGNHISSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEHGKLVTESFTNLKNEVASLTLALKHSKQELENKD 1439 D LL + C IC L P + CG RFC +CI D+LN K + CP ++ ++ D+ D R+ISQ+K CP ++ D + L+ +S + CP+ I C++ + + H+ + +H +L+ E++T + K+S E+ D Sbjct: 24 DGLLEARYECPICYCWLNEPILTKCGHRFCRKCITDWLNEKNSNCP-----LDNEPLDIKCDIFPDNCTRREISQIKKPCPNSMRGCVDQLSPTDIDTHLRQCPFAMSRQSQPCPFARIKCKFIATDEAALSAHIASECQQHLQLLLETYTGSSDRYKFWDPPAKNSVPEMSTND 193
BLAST of TNF receptor-associated factor vs. TrEMBL
Match: A0A182MKP3 (Uncharacterized protein OS=Anopheles culicifacies OX=139723 PE=4 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.078e-11 Identity = 46/175 (26.29%), Postives = 79/175 (45.14%), Query Frame = 3 Query: 942 DSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKAL---------CDYRSELQNIGNHISSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEHGKLVTESFTNLKNEVASLTLALKHSKQELENKD 1439 D LL + C IC L P + CG RFC +CI D+LN K + CP ++ ++ D+ D R+ISQ+K CP ++ + S L+ +S + CP+ I C++ + + H+ + +H +L+ E++T + K+S E+ D Sbjct: 24 DGLLEARYECPICYCWLNEPILTKCGHRFCRKCITDWLNEKNSNCP-----LDNEPLDIKSDIFPDNCTRREISQIKKPCPNSMRGCVDQFSPTEIDSHLRQCPFAMSRQSQPCPFARIKCKFIATDEAALNAHIASECQQHLQLLLETYTGSSDRYKFWDPPAKNSVPEMSTND 193
BLAST of TNF receptor-associated factor vs. TrEMBL
Match: A0A2M4AHW9 (Putative tnf-receptor-associated factor 6 OS=Anopheles triannulatus OX=58253 PE=4 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.181e-11 Identity = 46/154 (29.87%), Postives = 74/154 (48.05%), Query Frame = 3 Query: 936 AYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKAL--CDYRSELQNIGNH-------ISSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEHGKLVTESFTN 1370 A D LL + C IC L P + CG RFC +CI D+LN K + CP ++ ++ D+ D R+ISQ+K CP + C + I +H +SS + CP+ + C++ + + EH+ +H +L+ ES+T Sbjct: 22 ADDGLLEARYECPICYCWLNEPILTKCGHRFCRKCITDWLNEKNSNCP-----LDNEPLDIKCDIFPDNCTRREISQIKKPCPNWMRGCADQLSPTEIDSHQLQCPFGMSSQSQPCPFARVKCKFVARDEATLNEHIATDCQQHLQLLLESYTG 170
BLAST of TNF receptor-associated factor vs. Ensembl Cavefish
Match: traf1 (TNF receptor-associated factor 1-like [Source:NCBI gene;Acc:103045252]) HSP 1 Score: 56.9954 bits (136), Expect = 6.697e-8 Identity = 38/117 (32.48%), Postives = 60/117 (51.28%), Query Frame = 3 Query: 942 DSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYL-NNKETLCPGLSEDC---KDQLINFNGD-LHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGC 1277 D L FLC CN +L +Q+ CG R+C C++ L NNK+ +C ED D + D +D I+++I +++V C C +RS L++ +H S + + NIGC Sbjct: 20 DDLPPVHFLCSSCNNVLNEAHQTQCGHRYCRACVMWLLRNNKDLICTKCKEDPGSESDSSMMLTLDHFFSDNAINKEIQELRVHCVNQGCGWRSTLKDFEDHQSQCEYALIPCNIGC 136
BLAST of TNF receptor-associated factor vs. Ensembl Cavefish
Match: traf1 (TNF receptor-associated factor 1-like [Source:NCBI gene;Acc:103045252]) HSP 1 Score: 56.9954 bits (136), Expect = 7.217e-8 Identity = 38/117 (32.48%), Postives = 60/117 (51.28%), Query Frame = 3 Query: 942 DSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYL-NNKETLCPGLSEDC---KDQLINFNGD-LHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGC 1277 D L FLC CN +L +Q+ CG R+C C++ L NNK+ +C ED D + D +D I+++I +++V C C +RS L++ +H S + + NIGC Sbjct: 20 DDLPPVHFLCSSCNNVLNEAHQTQCGHRYCRACVMWLLRNNKDLICTKCKEDPGSESDSSMMLTLDHFFSDNAINKEIQELRVHCVNQGCGWRSTLKDFEDHQSQCEYALIPCNIGC 136
BLAST of TNF receptor-associated factor vs. Ensembl Cavefish
Match: traf6 (TNF receptor associated factor 6 [Source:NCBI gene;Acc:103021325]) HSP 1 Score: 54.299 bits (129), Expect = 4.641e-7 Identity = 33/117 (28.21%), Postives = 53/117 (45.30%), Query Frame = 3 Query: 927 YEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGC 1277 Y+ +D L ++ C IC + L++ Q+PCG RFC CI + + CP D + L D R+I + V+C C + EL+++ NHI C + + C Sbjct: 56 YDVDFDPPLESKYECPICLMGLRSAVQTPCGHRFCNCCIRKSIRDTGQKCP------VDNEVLTEDQLFPDNFAKREILSLTVRCRNVGCMEKMELRHLENHIP----HCKFATVPC 162
BLAST of TNF receptor-associated factor vs. Ensembl Cavefish
Match: traf6 (TNF receptor associated factor 6 [Source:NCBI gene;Acc:103021325]) HSP 1 Score: 54.299 bits (129), Expect = 4.641e-7 Identity = 33/117 (28.21%), Postives = 53/117 (45.30%), Query Frame = 3 Query: 927 YEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGC 1277 Y+ +D L ++ C IC + L++ Q+PCG RFC CI + + CP D + L D R+I + V+C C + EL+++ NHI C + + C Sbjct: 56 YDVDFDPPLESKYECPICLMGLRSAVQTPCGHRFCNCCIRKSIRDTGQKCP------VDNEVLTEDQLFPDNFAKREILSLTVRCRNVGCMEKMELRHLENHIP----HCKFATVPC 162
BLAST of TNF receptor-associated factor vs. Ensembl Cavefish
Match: traf6 (TNF receptor associated factor 6 [Source:NCBI gene;Acc:103021325]) HSP 1 Score: 54.299 bits (129), Expect = 4.742e-7 Identity = 33/117 (28.21%), Postives = 53/117 (45.30%), Query Frame = 3 Query: 927 YEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGC 1277 Y+ +D L ++ C IC + L++ Q+PCG RFC CI + + CP D + L D R+I + V+C C + EL+++ NHI C + + C Sbjct: 56 YDVDFDPPLESKYECPICLMGLRSAVQTPCGHRFCNCCIRKSIRDTGQKCP------VDNEVLTEDQLFPDNFAKREILSLTVRCRNVGCMEKMELRHLENHIP----HCKFATVPC 162
BLAST of TNF receptor-associated factor vs. Ensembl Sea Lamprey
Match: traf6 (TNF receptor-associated factor 6 [Source:NCBI gene;Acc:554561]) HSP 1 Score: 65.855 bits (159), Expect = 2.318e-11 Identity = 37/119 (31.09%), Postives = 55/119 (46.22%), Query Frame = 3 Query: 927 YEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVD--YLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGC 1277 YE ++ L ++ C IC + L+ P Q+PCG RFC CI+ L + CP D + G L D R+I + V+CP C +R EL+ + H+ C Y + C Sbjct: 51 YEADFEPPLESKYECPICLMALREPVQTPCGHRFCRACILHSMRLRDAGPKCP------VDNAVLHEGQLFPDNFAKREILSLTVRCPNKPCGHRGELRA----LQEHQLRCEYAQVPC 159
BLAST of TNF receptor-associated factor vs. Ensembl Nematostella
Match: EDO41243 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S4Z7]) HSP 1 Score: 58.9214 bits (141), Expect = 5.609e-9 Identity = 40/136 (29.41%), Postives = 63/136 (46.32%), Query Frame = 3 Query: 927 YEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETL-CPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGCQYPSAHMGL----IVEHL 1319 Y+ + +++E+ C IC+L L+ P Q+ CG RFC EC+ + K CP E ++ D+ D R I VKCP C + +EL++ + +H +C Y + C P L + EHL Sbjct: 11 YDSEFVIAVAEEYTCRICHLPLRVPVQTKCGHRFCKECLDEASRRKSRAECPMDREP-----LDLKKDVFLDKAAERTILSFLVKCPCKGCKWEAELRD----LEAHARNCDYELVTCSNPMCSAQLPRMDVDEHL 137
BLAST of TNF receptor-associated factor vs. Ensembl Nematostella
Match: EDO27426 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T9A1]) HSP 1 Score: 53.5286 bits (127), Expect = 4.012e-8 Identity = 33/101 (32.67%), Postives = 50/101 (49.50%), Query Frame = 3 Query: 936 AYDS----LLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETL-CPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNI 1223 YDS +++E+ C IC+L L+ P Q+ CG RFC EC+ + K CP E ++ D+ D R I VKCP C + +EL+++ Sbjct: 10 GYDSEFVIAVAEEYTCRICHLPLRVPVQTKCGHRFCKECLDEASRRKSRAECPMDREP-----LDLKKDVFLDKAAERTILSFLVKCPCKGCKWEAELRDL 105
BLAST of TNF receptor-associated factor vs. Ensembl Nematostella
Match: EDO49545 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RGK7]) HSP 1 Score: 51.2174 bits (121), Expect = 1.082e-6 Identity = 38/134 (28.36%), Postives = 59/134 (44.03%), Query Frame = 3 Query: 900 ERIWKLLNEYEFAYDSLLSDEFLCVICNLILKNPYQ-SPCGCRFCMECI--VDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKC--PKALCDYRSELQNIGNHISSHKESCPYTNIGCQYP 1286 +R+ + YE + L +E+ C IC L ++P Q CG RFC C+ + L LCP D+ + + D R I + VKC K C++ EL N I H ++C + ++ C P Sbjct: 3 DRVDRATGGYEAEFVEPLPEEYECPICQLAFRDPIQIEECGHRFCQSCLQELRRLQGSPVLCP------MDRRPISSTKVFVDKAARRAILGLGVKCWNWKRKCEWTGELSN----IEEHAKNCAHEDVHCTNP 126
BLAST of TNF receptor-associated factor vs. Ensembl Nematostella
Match: EDO48773 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RI91]) HSP 1 Score: 50.0618 bits (118), Expect = 3.176e-6 Identity = 34/131 (25.95%), Postives = 57/131 (43.51%), Query Frame = 3 Query: 894 KYERIWKLLNEYEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKC---PKALCDYRSELQNIGNHISSHKESCPYTNIGC 1277 +Y +L Y+ +D L ++ C IC L L++P Q+PCG RFC CI + + CP D +L+ D R++ V C + C ++ L+ + H+ + CP + C Sbjct: 33 QYGGPQRLEEGYDEFFDPPLESKYECPICLLGLRDPVQTPCGHRFCFNCIRRSIRDAGPKCP------VDNTPLSERELYRDNFAKREMMSFIVWCRLKKERGCTWKGALKELEEHL----KGCPCMDTNC 153
BLAST of TNF receptor-associated factor vs. Ensembl Nematostella
Match: EDO48394 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RJK8]) HSP 1 Score: 50.0618 bits (118), Expect = 3.430e-6 Identity = 32/100 (32.00%), Postives = 48/100 (48.00%), Query Frame = 3 Query: 957 DEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETL-CPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNH--ISSHK 1247 DE +C IC++++ P + CG +C CI + N KE + CP +E K I D R + ++VKC C ++ EL+ H I SHK Sbjct: 26 DELICAICHMVVNEPVLTSCGHSYCKYCIEKWCNGKEVVTCPVDNEQLKPSQI------FPDKKTDRIVLSLEVKCTNNPCRWKGELRQKQKHLKICSHK 119
BLAST of TNF receptor-associated factor vs. Ensembl Medaka
Match: traf6 (TNF receptor associated factor 6 [Source:NCBI gene;Acc:101161132]) HSP 1 Score: 59.3066 bits (142), Expect = 1.473e-8 Identity = 37/124 (29.84%), Postives = 55/124 (44.35%), Query Frame = 3 Query: 918 LNEYEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCP----GLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGC 1277 L Y+ +D L ++ C IC + L+N Q+ CG RFC CI + + CP LSED L D R+I + V+CP + C + EL+ H+ H C + + C Sbjct: 61 LQGYDVEFDPPLESKYECPICLMALRNAIQTRCGHRFCKSCIEKSIRDTGQRCPVDNEMLSED----------QLFPDNFAKREILSLTVRCPNSDCGEKMELR----HLEKHLAQCQFATVPC 170
BLAST of TNF receptor-associated factor vs. Ensembl Medaka
Match: traf3 (TNF receptor associated factor 3 [Source:NCBI gene;Acc:101161601]) HSP 1 Score: 50.447 bits (119), Expect = 5.879e-6 Identity = 33/108 (30.56%), Postives = 48/108 (44.44%), Query Frame = 3 Query: 960 EFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKAL--CDYRSELQNIGNHISSHKESCPYTNIGC 1277 ++ C C L+L P Q+ CG RFC CI D L+ +CP D F + D R+I +KV C C + LQ I +H++ CP+ + C Sbjct: 45 KYCCEACRLVLCQPRQTECGHRFCYSCINDILSCPNPVCPA------DMEPLFKDKIFRDVCCHREIMALKVYCRSEANGCQEQMSLQQIPDHVN----VCPFFEVPC 142
BLAST of TNF receptor-associated factor vs. Planmine SMEST
Match: SMESG000070126.1 (SMESG000070126.1) HSP 1 Score: 534.258 bits (1375), Expect = 0.000e+0 Identity = 260/268 (97.01%), Postives = 262/268 (97.76%), Query Frame = 3 Query: 804 MHVCRIVNLLSIDHNYYLWTLFNNVIMANAKYERIWKLLNEYEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEHGKLVTESFTNLKNEVASLTLALKHSKQELENKDNLLIDLENRLNELQGTREIKIQELTETLDKCKEENVQLSSELRTLKSVSEVFSFNQ 1607 MHVCR VNLLSIDHNYYLWTLFNNVIMANAKYERIWKLL+EYEFAYDSLLSDEFLCVICN ILKNPYQSPCGCRFCMECIVDYLN+KET CPG SEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEHGKLVTESF NLKNEVASLTLALKHSKQELENKDNLLIDLENRLNELQGTREIKIQELTETLDKCKEENVQLSSELRTLKSVSEVFS NQ Sbjct: 1 MHVCRTVNLLSIDHNYYLWTLFNNVIMANAKYERIWKLLDEYEFAYDSLLSDEFLCVICNSILKNPYQSPCGCRFCMECIVDYLNDKETHCPGSSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEHGKLVTESFANLKNEVASLTLALKHSKQELENKDNLLIDLENRLNELQGTREIKIQELTETLDKCKEENVQLSSELRTLKSVSEVFSSNQ 268 HSP 2 Score: 83.1889 bits (204), Expect = 1.936e-16 Identity = 43/135 (31.85%), Postives = 76/135 (56.30%), Query Frame = 2 Query: 8 ILYDKMSEIIYKIMKENKFEIVNEISRELRCNICNELMIKACSAPCGCRFCSDYIEHYLSGSHKFCPGTSKSCQNKMINYKNDIVIDYISNIRISEISVTCQKQQRQFKDKLVLIAGYFL----TCDKRSISCQF 400 I+ + E I+K++ E +F + +S E C ICN ++ +PCGCRFC + I YL+ CPG+S+ C++++IN+ D+ DY+ + +IS++ V C K ++ +L I + +C +I CQ+ Sbjct: 26 IMANAKYERIWKLLDEYEFAYDSLLSDEFLCVICNSILKNPYQSPCGCRFCMECIVDYLNDKETHCPGSSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGCQY 160
BLAST of TNF receptor-associated factor vs. Planmine SMEST
Match: SMESG000070130.1 (SMESG000070130.1) HSP 1 Score: 482.641 bits (1241), Expect = 2.611e-163 Identity = 246/290 (84.83%), Postives = 256/290 (88.28%), Query Frame = 3 Query: 882 MANAKYERIWKLLNEYEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEHGKLVTESFTNLKNEVASLTLALKHSKQELENKDNLLIDLENRLNELQGTREIKIQELTETLDKCKEENVQLSSELRTLKSVSEVFSFNQVRFM----KR*RKH-LPIKYETANLGTELTFGINIYSPYKH*QYKGRR 1736 MANAKYERIWKLL+EYEFAYDSLLSDEFLCVICN ILKNPYQSPCGCRFCMECIVDYLN+KET CPG SEDCKDQLINFNGDLHADYVISRKISQVKVKCPK LCDYRSELQNIGNHISSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEHGKLVTESF NLKNEVASLTLALKHSKQELENKDNLLIDLENRLNELQGTREIKIQELTETLDKCKEENVQLSSELRTLKSVSEVFSFNQ + + RK+ L Y + F IY+ +K Q +G+R Sbjct: 1 MANAKYERIWKLLDEYEFAYDSLLSDEFLCVICNSILKNPYQSPCGCRFCMECIVDYLNDKETHCPGSSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKTLCDYRSELQNIGNHISSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEHGKLVTESFANLKNEVASLTLALKHSKQELENKDNLLIDLENRLNELQGTREIKIQELTETLDKCKEENVQLSSELRTLKSVSEVFSFNQENYYLQNKEEDRKYILQPNYNVSTFDPIAPFKWQIYN-FKVLQSEGKR 289 HSP 2 Score: 82.4185 bits (202), Expect = 2.736e-16 Identity = 42/128 (32.81%), Postives = 73/128 (57.03%), Query Frame = 2 Query: 29 EIIYKIMKENKFEIVNEISRELRCNICNELMIKACSAPCGCRFCSDYIEHYLSGSHKFCPGTSKSCQNKMINYKNDIVIDYISNIRISEISVTCQKQQRQFKDKLVLIAGYFL----TCDKRSISCQF 400 E I+K++ E +F + +S E C ICN ++ +PCGCRFC + I YL+ CPG+S+ C++++IN+ D+ DY+ + +IS++ V C K ++ +L I + +C +I CQ+ Sbjct: 7 ERIWKLLDEYEFAYDSLLSDEFLCVICNSILKNPYQSPCGCRFCMECIVDYLNDKETHCPGSSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKTLCDYRSELQNIGNHISSHKESCPYTNIGCQY 134
BLAST of TNF receptor-associated factor vs. Planmine SMEST
Match: SMESG000070130.1 (SMESG000070130.1) HSP 1 Score: 481.871 bits (1239), Expect = 2.941e-163 Identity = 246/290 (84.83%), Postives = 256/290 (88.28%), Query Frame = 3 Query: 882 MANAKYERIWKLLNEYEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEHGKLVTESFTNLKNEVASLTLALKHSKQELENKDNLLIDLENRLNELQGTREIKIQELTETLDKCKEENVQLSSELRTLKSVSEVFSFNQVRFM----KR*RKH-LPIKYETANLGTELTFGINIYSPYKH*QYKGRR 1736 MANAKYERIWKLL+EYEFAYDSLLSDEFLCVICN ILKNPYQSPCGCRFCMECIVDYLN+KET CPG SEDCKDQLINFNGDLHADYVISRKISQVKVKCPK LCDYRSELQNIGNHISSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEHGKLVTESF NLKNEVASLTLALKHSKQELENKDNLLIDLENRLNELQGTREIKIQELTETLDKCKEENVQLSSELRTLKSVSEVFSFNQ + + RK+ L Y + F IY+ +K Q +G+R Sbjct: 1 MANAKYERIWKLLDEYEFAYDSLLSDEFLCVICNSILKNPYQSPCGCRFCMECIVDYLNDKETHCPGSSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKTLCDYRSELQNIGNHISSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEHGKLVTESFANLKNEVASLTLALKHSKQELENKDNLLIDLENRLNELQGTREIKIQELTETLDKCKEENVQLSSELRTLKSVSEVFSFNQENYYLQNKEEDRKYILQPNYNVSTFDPIAPFKWQIYN-FKVLQSEGKR 289 HSP 2 Score: 82.8037 bits (203), Expect = 2.137e-16 Identity = 42/128 (32.81%), Postives = 73/128 (57.03%), Query Frame = 2 Query: 29 EIIYKIMKENKFEIVNEISRELRCNICNELMIKACSAPCGCRFCSDYIEHYLSGSHKFCPGTSKSCQNKMINYKNDIVIDYISNIRISEISVTCQKQQRQFKDKLVLIAGYFL----TCDKRSISCQF 400 E I+K++ E +F + +S E C ICN ++ +PCGCRFC + I YL+ CPG+S+ C++++IN+ D+ DY+ + +IS++ V C K ++ +L I + +C +I CQ+ Sbjct: 7 ERIWKLLDEYEFAYDSLLSDEFLCVICNSILKNPYQSPCGCRFCMECIVDYLNDKETHCPGSSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKTLCDYRSELQNIGNHISSHKESCPYTNIGCQY 134
BLAST of TNF receptor-associated factor vs. Planmine SMEST
Match: SMESG000070126.1 (SMESG000070126.1) HSP 1 Score: 480.715 bits (1236), Expect = 1.796e-162 Identity = 235/242 (97.11%), Postives = 237/242 (97.93%), Query Frame = 3 Query: 882 MANAKYERIWKLLNEYEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEHGKLVTESFTNLKNEVASLTLALKHSKQELENKDNLLIDLENRLNELQGTREIKIQELTETLDKCKEENVQLSSELRTLKSVSEVFSFNQ 1607 MANAKYERIWKLL+EYEFAYDSLLSDEFLCVICN ILKNPYQSPCGCRFCMECIVDYLN+KET CPG SEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEHGKLVTESF NLKNEVASLTLALKHSKQELENKDNLLIDLENRLNELQGTREIKIQELTETLDKCKEENVQLSSELRTLKSVSEVFS NQ Sbjct: 1 MANAKYERIWKLLDEYEFAYDSLLSDEFLCVICNSILKNPYQSPCGCRFCMECIVDYLNDKETHCPGSSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEHGKLVTESFANLKNEVASLTLALKHSKQELENKDNLLIDLENRLNELQGTREIKIQELTETLDKCKEENVQLSSELRTLKSVSEVFSSNQ 242 HSP 2 Score: 82.4185 bits (202), Expect = 2.867e-16 Identity = 42/130 (32.31%), Postives = 74/130 (56.92%), Query Frame = 2 Query: 29 EIIYKIMKENKFEIVNEISRELRCNICNELMIKACSAPCGCRFCSDYIEHYLSGSHKFCPGTSKSCQNKMINYKNDIVIDYISNIRISEISVTCQKQQRQFKDKLVLIAGYFL----TCDKRSISCQFNA 406 E I+K++ E +F + +S E C ICN ++ +PCGCRFC + I YL+ CPG+S+ C++++IN+ D+ DY+ + +IS++ V C K ++ +L I + +C +I CQ+ + Sbjct: 7 ERIWKLLDEYEFAYDSLLSDEFLCVICNSILKNPYQSPCGCRFCMECIVDYLNDKETHCPGSSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGCQYPS 136
BLAST of TNF receptor-associated factor vs. Planmine SMEST
Match: SMESG000070126.1 (SMESG000070126.1) HSP 1 Score: 481.485 bits (1238), Expect = 6.792e-159 Identity = 235/242 (97.11%), Postives = 237/242 (97.93%), Query Frame = 3 Query: 882 MANAKYERIWKLLNEYEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEHGKLVTESFTNLKNEVASLTLALKHSKQELENKDNLLIDLENRLNELQGTREIKIQELTETLDKCKEENVQLSSELRTLKSVSEVFSFNQ 1607 MANAKYERIWKLL+EYEFAYDSLLSDEFLCVICN ILKNPYQSPCGCRFCMECIVDYLN+KET CPG SEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEHGKLVTESF NLKNEVASLTLALKHSKQELENKDNLLIDLENRLNELQGTREIKIQELTETLDKCKEENVQLSSELRTLKSVSEVFS NQ Sbjct: 1 MANAKYERIWKLLDEYEFAYDSLLSDEFLCVICNSILKNPYQSPCGCRFCMECIVDYLNDKETHCPGSSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGCQYPSAHMGLIVEHLHDQIYEHGKLVTESFANLKNEVASLTLALKHSKQELENKDNLLIDLENRLNELQGTREIKIQELTETLDKCKEENVQLSSELRTLKSVSEVFSSNQ 242 HSP 2 Score: 201.06 bits (510), Expect = 2.821e-54 Identity = 103/149 (69.13%), Postives = 118/149 (79.19%), Query Frame = 2 Query: 11 LYDKMSEIIYKIMKENKFEIVNEISRELRCNICNELMIKACSAPCGCRFCSDYIEHYLSGSHKFCPGTSKSCQNKMINYKNDIVIDYISNIRISEISVTCQKQQRQFKDKLVLIAGYFLTCDKRSISCQFNAIG---YEVMNDERKAHL 448 + DKMSE IYKIMKE KFEIV+EISREL+CNICNELMIKACSAPCGC FCSD IE YL G+ KFCPGTS+ CQ KMINY NDIVI+ +N++ISEI V C +Q +F+D+L +IA + TCDK ISC FNAIG EVMNDE K HL Sbjct: 429 VVDKMSESIYKIMKEKKFEIVSEISRELKCNICNELMIKACSAPCGCCFCSDCIEQYLDGADKFCPGTSRRCQMKMINYANDIVIENRANVKISEIIVKCPRQNCEFEDELEMIANHVRTCDKCPISCPFNAIGCKVNEVMNDEMKTHL 577 HSP 3 Score: 125.561 bits (314), Expect = 2.290e-29 Identity = 76/234 (32.48%), Postives = 123/234 (52.56%), Query Frame = 3 Query: 900 ERIWKLLNEYEFAYDSLLSDEFLCVICNLILKNPYQSPCGCRFCMECIVDYLNNKETLCPGLSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKE---SCPYTNIGCQYPSAHMGLIVEHLHDQIYEHGKLVTESFTNL-------KNEVASLTLALKHSKQELENKDNLLIDLENRLNELQGTREIKIQELTETLDKCKEENVQLSSELRT 1571 E I+K++ E +F S +S E C ICN ++ +PCGC FC +CI YL+ + CPG S C+ ++IN+ D+ + + KIS++ VKCP+ C++ EL+ I NH+ + + SCP+ IGC+ + HL+ Y H KL+ + NL KNE+ + KQ+++N + + ++ E++ E I EL E + K EN +L SE+ T Sbjct: 435 ESIYKIMKEKKFEIVSEISRELKCNICNELMIKACSAPCGCCFCSDCIEQYLDGADKFCPGTSRRCQMKMINYANDIVIENRANVKISEIIVKCPRQNCEFEDELEMIANHVRTCDKCPISCPFNAIGCKVNEVMNDEMKTHLNQDNYIHSKLLIDIINNLLSEMESMKNEIIEIKRENSQFKQKIDNIELQSANQHQKICEMENPGE--IDELNEEMGALKNENQRLRSEMET 666 HSP 4 Score: 83.5741 bits (205), Expect = 3.274e-16 Identity = 42/128 (32.81%), Postives = 73/128 (57.03%), Query Frame = 2 Query: 29 EIIYKIMKENKFEIVNEISRELRCNICNELMIKACSAPCGCRFCSDYIEHYLSGSHKFCPGTSKSCQNKMINYKNDIVIDYISNIRISEISVTCQKQQRQFKDKLVLIAGYFL----TCDKRSISCQF 400 E I+K++ E +F + +S E C ICN ++ +PCGCRFC + I YL+ CPG+S+ C++++IN+ D+ DY+ + +IS++ V C K ++ +L I + +C +I CQ+ Sbjct: 7 ERIWKLLDEYEFAYDSLLSDEFLCVICNSILKNPYQSPCGCRFCMECIVDYLNDKETHCPGSSEDCKDQLINFNGDLHADYVISRKISQVKVKCPKALCDYRSELQNIGNHISSHKESCPYTNIGCQY 134 The following BLAST results are available for this feature:
BLAST of TNF receptor-associated factor vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of TNF receptor-associated factor vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of TNF receptor-associated factor vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of TNF receptor-associated factor vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of TNF receptor-associated factor vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of TNF receptor-associated factor vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of TNF receptor-associated factor vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of TNF receptor-associated factor vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of TNF receptor-associated factor vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of TNF receptor-associated factor vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of TNF receptor-associated factor vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of TNF receptor-associated factor vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of TNF receptor-associated factor vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of TNF receptor-associated factor vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30018688 ID=SMED30018688|Name=TNF receptor-associated factor|organism=Schmidtea mediterranea sexual|type=transcript|length=2628bpback to top protein sequence of SMED30018688-orf-1 >SMED30018688-orf-1 ID=SMED30018688-orf-1|Name=SMED30018688-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=275bp MHVCRIVNLLSIDHNYYLWTLFNNVIMANAKYERIWKLLNEYEFAYDSLLback to top protein sequence of SMED30018688-orf-2 >SMED30018688-orf-2 ID=SMED30018688-orf-2|Name=SMED30018688-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=148bp MSEIIYKIMKENKFEIVNEISRELRCNICNELMIKACSAPCGCRFCSDYIback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|