SMED30018530

Overview
NameSMED30018530
Smed IDSMED30018530
Length (bp)7922
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30018530 (SMED30018530) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30018530 (SMED30018530) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30018530 (SMED30018530) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30018530 (SMED30018530) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30018530

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30018530 SmedASXL_018504SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
head regionSMED30018530 SmedASXL_018503SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30018530 dd_Smed_v4_19281_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30018530 dd_Smed_v4_19281_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30018530 dd_Smed_v4_19281_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30018530 dd_Smed_v6_19281_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
photoreceptor neuronSMED30018530 SMED30018530smed_20140614PMID:22884275
Lapan et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
head regionSMED30018530 OX_Smed_1.0.08543ox_Smed_v2PMID:24238224
Kao et al., 2013		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30018530 vs. TrEMBL
Match: A0A1L3KF52 (Uncharacterized protein (Fragment) OS=Beihai toti-like virus 3 OX=1922733 PE=4 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.647e-50
Identity = 218/808 (26.98%), Postives = 363/808 (44.93%), Query Frame = -1 
Query:  231 DFLGDLIWSKSKIMKEKAAIFRKGHSFC---RDAGYVDMEEQYSIKTHIKLSKFRS---LDA-LPAVFRRCRELKAVKSVNPGGFHCFWTTGRVGACYQVSRCFCLCANVLPEHLLTDWLLFLLRSHILCELQRDDFLTLGKMITVLAKKGRGDFLDSWFALVDLNTWAGFNVGSSIVDETKKQVPDWIGGELSVKHVKPELWDRVMDDTMDDMFSPVSSDVVSNANHKVVSFYNWILNPDNWVSSGASMVKGRVLTDDGDVVKSKGNKANVALKYTVEEIIDIINNRARRLELKPVLKIELGWKNRLIIKVDDFININASYSGRVCMALMKGNPHSS-LFMNLNQQYNMWNQWRMLLSIKSVLAYPYDAPSFDQRITTAELRSYFKWKYRTLSKFVFDEGLKAEL-LNSVLLAEDQYFGQLCDVDGQDLKLDHGMVSGYFDTALGDSVISVSRNVSILRCVDAFLGHREMTKISPVGQGDDFNCMSSSVVRLCL-HFQMVNKLGWGAHKEKNFIAIGVTEYLRKMLVVKENKVSGYLSRKMAGLLFRDPIKRGGAVGISKLREKVGALNVLITRG-ADRSVVSNYIYSV--CHKVLMSPGKPFPPEHSLAIAFSPAACGGAGIWLDQD--SCSSSSARWCKLRDLNDSAESLGAP----MVSGVYRQNLDLVVNAVGKNFKIDNLKKQMIGQILVDGEVKPYLVVDYVQKVRAGVILKVGKMAEAPHKSDVIPKWLSELS--FMRSICADAIKFCVFNDCLGKLEGIIEPISLKMLISLNGRWHRATFLDWLAGKLNLRSPLIVGFS 2591
            DFL DL W + K+  EK  +  K +  C    D   V+ E     K H  L   R+   +D     V   C++L  V S N  G  CF  TGRV   + +  CF    ++L      D +     +H+ C +    +    K +T+  KKGR      W   V++  + G+   + +V +    + DW+ GE  V       +D   D  M +      S V       ++SF +++ N DNWV+ GA  VK        ++  SK +K   AL ++ +EI+D I +  +    +  +K E+G + RL     D + I  SY  R    ++K    SS ++M+   Q  MW +     + +S   YPYDAP +D  + T E+      + + + K V +  + ++L + S LL E ++   +   D    K  HG+ SG  DT   D VI+  R  ++++ +    G     K    G       M+S    LCL HF ++ K G GAH +KNF+A    E+LRK    +  K+ G L+R +   +FR P++RGGA G S + E++G  NV++ R   DR+V+   + SV   +   +  G     E  L I F+P + GG G W D D     + S  +  + ++ ++ E +  P      SG+ ++  + +      N +   +K++   +++  G+ KP + V   ++VR    + V      P K  + P +   +S  F   I  + +K   F   L  L  +++   L++L  L     R   L+W+  K+ +R P I+G S
Sbjct:   56 DFL-DLCWDEEKVASEKIKLETKNNKVCLEHEDNESVEGENLNDWKLHSSLILGRNRVNIDKWFTLVHENCKDLVNVNS-NIHGKRCFLKTGRVELSFTIIYCFAFFCSLLKTDDAIDCIRLFAINHLFCHMPILVWYDCAKRLTLFLKKGREKAFRLWLQCVNVELFVGYQSDTQLVHDDYINMKDWLEGEKIVCSDVSSFYDYYFDYYMKNFVYKQESLV------DMLSFDDFVNNFDNWVTKGAGAVKL-------EIPNSKKSKTAYALSFSKKEILDRILS-IKNWTYRAAIKKEVGKRRRLFAIASDELIIVQSYVSRYTSKVLKRTVESSPIWMSSESQRLMWEEIEDCANSQSHFLYPYDAPEYDHNVGTNEVEITIDSENQLIKKNVGN--VHSDLVMFSDLLNERKFDITVECGDFPSFKRGHGIGSGVKDTYEKDEVINEVRTETVIKSIKQCFGLSREHKAWKSGDDLLLKTMNS---MLCLAHFWIMEKCGVGAHVQKNFVATDNFEFLRKNRSTESGKIIGPLARVICKSIFRHPLQRGGATGRSMMMERLGNWNVIVQRECTDRNVIPKILSSVRSINLSYVELGDFKWNEIYLNILFTPISLGGCG-WKDLDILKHGAKSLDFYGMEEV-ETDEFVSNPDKEISFSGIVKEKSESIFQEFKVNVETSKVKEEYYDRVVRSGK-KPIVWVIKKREVRGNDKVIVNVPLVWPGKIMMCPTFSVFMSNEFGSIILKEVLKRNEFEMTLD-LFKLLDEKGLRVLNILLKHASRQALLEWIELKVKVRRPFILGRS 838
[Close]
BLAST of SMED30018530 vs. TrEMBL
Match: A0A1L3KFB9 (RNA-directed RNA polymerase (Fragment) OS=Wenzhou toti-like virus 2 OX=1923681 PE=4 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.281e-46
Identity = 176/696 (25.29%), Postives = 306/696 (43.97%), Query Frame = -1 
Query:  186 FLTLGKMITVLAKKGRGDFLDSWFALVDLNTWAGFNVGSSIVDETKKQVPDWIGGELSVKHVKPELWDRVMDDTMDDMFSPVSSDVVSNANHKV--VSFYNWILNPDNWVSSGASM---------VKGRVLTDDGDVVKSKGNKANVALKYTVEEIIDIINNRARRLELKPVLKIELGWKNRLIIKVDDFININASYSGRVCMALMKGNPH-SSLFMNLNQQYNMWNQWRMLLSIKSVLAYPYDAPSFDQRI-TTAELRSYFKWKYRTLSKFVFDEGLKAELLNSVLLAEDQYFGQLCDVDGQDLKLDHGMVSGYFDTALGDSVISVSRNVSILRCVDAFLGHREMTKISPVGQGDDFNCMSSSVVRLCLHFQMVNKLGWGAHKEKNFIAIGVTEYLRKMLVVKENKVSGYLSRKMAGLLFRDPIKRGGAVGISKLREKVGALNVLITRGADRSVVSNYIYSVCHKVLMS-PGKPFPPEHSLAIAFSPAACGGAGIWLDQDSCSSSSARWCKLRDLNDSAESLGAPMVS--GVYRQNLDLVVNAVGKNFKI-DNLKKQMI--GQILVDG---EVKPYLVVDYVQKVRAGVILKVGKMAEAPHKSDVIPKWLSELSFMRSICADAIKFCVFNDCLGKLEGIIEPISLKMLISLNGRWHRATFLDWLAGKLNLRSPLIVGFSPAEVS-ILNGFFALYF 2204
            F+   K +T LAKK    F  +W   VD N  AG+NV S   D +K         E  ++    EL +       ++M++   + + ++   K   ++   W+ NPDNW++SG+S                 D    + SKGNK   AL   + E+I+I+       E KP  K+ELG KNR+II    +  +   Y        +    + S++FM+   Q+  +N  + + +   V   P DAP FD+R+ T  EL+  F   +  + +F    G + + L      E  YF     ++G+ ++   G  SG   TA  D++I+ SR +   + +    G     ++  VG GDD   +   +      ++ + + G GAHK+K F+    TE+LRK  V+ +  VSGYL R+M+G+LFRDP  +    G  ++RE + + ++  TR  + + + +YI     K L S   K +  E  L    +PA   G G       C  ++     L  +     ++        G++   ++   N +GK  K  + + K ++   Q + +    E+KP     ++ K +  +I       E+  +S  IP W     +      D +++ + ++    L  I     + +   L     R  F +W+ GKL+ +  +I+G+S +  S I + F  LY 
Sbjct:   29 FVDNAKKLTTLAKKFGERFSKNWKLYVDWNLMAGYNVNSEERDFSKDLF------EWGIQSTPRELKNWSDSRYYEEMYNATYNLLTTSKQFKPQDLTLREWLQNPDNWITSGSSQGIKVLINYNKDSNYSNDKSKSINSKGNKTAFALSSNINEVINILKLEHFEEENKPATKVELGKKNRVIIASGIYNQLRMGYVWSWMKTGLNNKVNWSTIFMDNETQFKFFNDLKAMCNCTKV-HLPLDAPEFDKRVDTNLELKPVFSAFHELVKQFCVGIG-REDTLEMSKKMESNYFSAFITINGKKVQWKEGWPSGVKLTAAVDTIINCSRTILFKKHLAEEQGL--YVRMKSVGTGDDILAIFDKIYESGQFYKEMKESGVGAHKQKQFLDCNRTEFLRK--VITKEDVSGYLPRRMSGILFRDPTTKERFYGEERMREILASWHICTTRNGNWAKIKSYIIEDLWKYLNSNSSKNYSKEDILDWLHTPATLDGGGY------CDGTTVN--SLLGIKQETGTINFKYKGNLGMFDDKIEKTENVIGKKSKFREKIIKSLVPTDQPMFESYSIELKP----KHLPKFKHQLIPSDFITMESKIRS--IPTWSIIEDYQHLEVEDIVQWAI-DEGFETLISITREDKIDITRQLYRSMERKLFYNWIRGKLSFKRNIILGWSTSASSVIFSKFEKLYL 697
[Close]
BLAST of SMED30018530 vs. TrEMBL
Match: A0A1L3KF12 (Uncharacterized protein (Fragment) OS=Beihai paphia shell virus 5 OX=1922500 PE=4 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.958e-42
Identity = 158/603 (26.20%), Postives = 263/603 (43.62%), Query Frame = -1 
Query:  876 KQIQMASEHFDFLGDLIWSKSKIMKEKAAIFRKGHSFCR---DAGYVDMEEQYSIKTHIKLSKFRSLDALPAVFRRCRELKAVKSVNPGGFHCFWT-------TGRVGACYQVSRCFCLCANVLPEHLLTDWLLFLLRSHILCELQRDDFLTLGKMITVLAKKGRGDFLDSWFALVDLNTWAGFNVGSSIVDETKKQVPDWIGGELSVKHVKPELWDRVMDDTMDDMFSPVSSDVVSNANHKVVSFYNWILNPDNWVSSGASMVKGRVLTDDGDVVKSKGNKANVALKYTVEEIIDIINNRARRLELKPVLKIELGWKNRLIIKVDDFININASYSGRVCMALMKGNPHSS-LFMNLNQQYNMWNQWRMLLSIKSVLAYPYDAPSFDQRITTAELRSYF----KWKYRTLSKFVFDEGLKAELLNSVLLAEDQYFGQLCDVDG-QDLKLDHGMVSGYFDTALGDSVISVSRNVSILRCVDAFLGHREMTKISPVGQGDDFNCMSSSVVRLCLHFQMVNKLGWGAHKEKNFIAIGVTEYLRKMLVVKENKVSGYLSRKMAGLLFRDPIKRGGAVGISKLREKVGALNVLITRGA-----DRSVV 2621
            +QI +  +  D    L W+K    K            C    D   V  E     KT+ K            ++R  R+LK  + VN G      +       TG V     +  C     ++L +    +++  L+  H+LC L   ++ T  K +  + KKGR     SW   V+   +AG+N+ + +VD+  ++   W+GGE  V       +D      M +         + N     VSF  +I N DNW++SGA   K +V     D   S+   A +     +EE    ++     LE K  +KIE G ++RL    +D + +   Y+  +    +K    SS ++   +++   W ++R+    K+   YPYDAPSFD  + T E+ S       W  R       D   +  + N++L   ++++     ++G    K  HG+ SG   T   D +++  R  +I   +      +  +++     GDD      +V  L  HF+++ K G GAH +KN++A+   E+LRK    +   V G L+R +   +FR+P++RGGA G S + E++   NVLI RGA     DR +V
Sbjct:   74 EQINLCRKESDSFNQLFWNKQLTQKRFLEFTSNQGKRCDKGCDVEGVTGEYDEDWKTYAKSRFNNKFYDFSRLYRDLRQLK--REVNDGKNFNNSSSSSCFNKTGSVLCSQTILSCIQFFLSLLVKSEQIEFVRLLMAGHLLCGLSIKEWFTTAKDLGTVLKKGRERISASWLRFVNFELFAGYNLDTVVVDKDYEEAKKWLGGEKYVCEEVLPFYDYNFRKYMKEKV------FIHNIKSDEVSFQEFIRNTDNWMTSGAGFHKLKV----KDGKNSRTAFAVLKTPAKIEEECLSLD-----LEYKVSIKIEPGKRHRLFAVGNDHLLVMQKYTLALAERTVKKEVTSSPIWCPRSEEREKWRRYRLSSMKKNKFKYPYDAPSFDHEVGTNEVESVMLEENAWFKRNKDTIHAD---RITISNAIL---EKWWNTDIKIEGYPTFKYKHGVGSGIPATYYLDELVNEGRTETIFASIKKAFNLK--SEVVSDKSGDDLMAECRNVAPLIAHFEIMQKCGVGAHPDKNYLALDNFEFLRKNFDERRKLVCGPLARNITKFVFRNPLQRGGATGRSLMMERIKKWNVLIQRGANAPNLDRRIV 651
[Close]
BLAST of SMED30018530 vs. TrEMBL
Match: A0A1L3KF04 (RNA-directed RNA polymerase OS=Beihai sea slater virus 3 OX=1922659 PE=4 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 8.225e-23
Identity = 184/804 (22.89%), Postives = 320/804 (39.80%), Query Frame = -1 
Query:   75 PGGFHCFWTTGRVGACYQVSRCFCLCANVLPEHLLTDWLLFLLRSHILCELQR-DDFLTLGKMITVLAKKGRGDFLDSWFALVDLNTWAGFNVGSSIVD-ETKKQVPDWIGGELSVKHVKPELWDRVMDDTMDDMFSPVSSDVVSN--ANHKVVSFYNWILNPDNWVSSGASMVKGRVLTDDGDVVKSKGNKAN-----VALKYTVEEIIDIINNRARRLE-LKPVLKIELGWKNRLIIKVDDFININASYSGRVCMALMKGNPHSSLFMNLNQQYNMWNQWRMLLSIKSVLA---------YPYDAPSFDQRITTAELRSYFKWKYRTLSKFVF------DEGLKAELLNSVLLAEDQYFGQ--LCDVDGQDLKLDHGMVSGYFDTALGDSVISVSRNVSILRCVDAFLGHREMTKISPVGQGDDFNCMSSSVVRLCLHFQMVNKLGWGAHKEKNFIAIGVTEYLRKMLVVKENKVSGYLSRKMAGLLFRDPIKRGGAVGISKLREKVGALNVLITRGADRSVVSNYIYSVCHKVLMSPGKPFPPEHSLAIAF-SPAACGGAGIWLDQDSCSSSSARWCKLRDLNDSAESLGAPMVSGVYRQNLDLVVNAVGKNFKIDNLKKQMIGQILVDGEV-----KPYLVVDYVQKVRAGVILKVGKMAEAPHK-SDVIPKWLSELSFMRSICADAIKFCVFNDCLGKLEGIIEPISLKMLISLNGRWHRATFLDWLAGKLNLRSPLIVGFSPAEVSILNGFFALYFWVPL-FSRHSVTTDQLVKQNLNVE----YSLVDALYRGVLPL 2369
            P  FH F    ++        CF +   + P+    D L  LL+   L  L   +DF    K +T++AKK    F   W   VD + + G+ V S + + E  +++  W+GG+++ +    E   R  +D     +  V+   V          S  NWILN  +WV+SG+S  +G V T+  D V SK +K+      +A   T +E+ D +  +    +  K   KIE G K+R II        +AS+   V ++ +      +L  N      M+   + +L +K  L           P DA  FD+ ++  E+   F      L           D+ +  +  N + +A+ +++    L  +D   +  +HG+ SG   T L DS+I+  R       ++  +G +    +S   QGDD     +  V +       N      + +KNF +I   EYLRK+    E +  GYL+R++  L FRDP+K     G  + RE+V     L  R A+ +            VL         E  +   F +P  CGG G+        +   +W  L   N+  +       +GV+   + ++   V  N  I N     +G  LVD +      K      Y+      + L + +        S+   +W +    +     D I  C  +  L  L  I +P   ++      +  +  F DW+  KL   +P +       +S +      Y+   L  S++ +    +VK +  +E    Y+L++ + +  + +
Sbjct:   95 PAEFHDFPVVPKL--------CFTMLIYLRPD--FKDKLFRLLKHSKLNHLSDFEDFRRWAKELTLIAKKNATVFDPDWMLFVDYDQFLGYAVQSQMSENEEIEKIVKWLGGDVN-RGSTAEDQTRYYND-----YKYVAEKFVKYFIREPPTKSLRNWILNTKDWVTSGSS--RG-VTTEVFDTVTSKTSKSRKVKNAIACNITAKELYDRLTLKINTDDNYKFAEKIEPGQKHRGII--------SASFEQNVRLSFVSTWVEENLKRNSRHGLTMFYDDKSILDMKIGLCRDFSLGGICLPLDASGFDENVSRGEVEIVFDAMLAQLRNLAAEAETERDKRIIFDYFNILKIAKKRFYDVPVLTSLDNFVVNAEHGIPSGSRWTGLLDSIINKLRFEVCQLQLNLKVGLK-FDVMSQHFQGDDMQLRLAKWVDVIRILNFYNHYNLKINPQKNFASIKHDEYLRKVYTNTEQR--GYLTRRLCKLCFRDPLKNESLDGAERCRERVRGFISLHGRSANYTRCEQAAKEDVEYVLTKGFNTIIREDDIDNWFGTPVTCGGMGLEF------TGKKKWINLVS-NNIFDKRFVKKPTGVHADRIAMLRKRVTVNI-IPNTFSVELGDSLVDLKTATNNKKLTTRFAYIDAPGKDITLALARDFNLEESFSNRWFEWRARPDLIYLPLMDLIDVCFTDLDLTLL--ITDPNIHEITALYFDKMDKFVFRDWMKNKLKFATPTLCWVDDTLLSTVTARVKHYYLSKLIISKNQIYKRDIVKVSGTIEQVAYYTLLNIIRKSPISM 858
[Close]
BLAST of SMED30018530 vs. TrEMBL
Match: A0A1L3KFB5 (RNA-directed RNA polymerase OS=Beihai toti-like virus 5 OX=1922735 PE=4 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.337e-21
Identity = 128/535 (23.93%), Postives = 230/535 (42.99%), Query Frame = -1 
Query:  759 VSRCFCLCANVLPEHLLT---DWLLFLLRSHILCELQRDDFLTLGKMITVLAKKGRGDFLDSWFALVDLNTWAGF-NVGSSIVDETKKQVPDWIGGEL---SVKHVKPELWDRVMDDTMDDMFSPVSSDVVSNANHKVVSFYNWILNPDNWVSSGASM-VK---GRVLTDDGDVV---KSKGNKANVALKYTVEEIIDIINNRARRLELKPVLKIELGWKNRLIIKVDDFININASY-SGRVCMALMKGNPHSSLFMNLNQQYNMWNQWRMLLSIKSVLAY-PYDAPSFDQRITTAELRSYFKWKYRTLSKFVFDEGLKAELLNSVLLAEDQYFGQLCDVDGQDLKLDHGMVSGYFDTALGDSVISVSRNVSILRCVDAFLGHREMTKISPVGQGDDFNCMSSSVVRLCLHFQMVNKLGWGAHKEKNFIAIGVTEYLRKMLVVKENKVSGYLSRKMAGLLFRDPIKRGGAVGISKLREKVGALNVLITRGADRSVVSNYIYSVCHKVLMSPGKPFPPEHSLAIAFSPAACGGAGI 2315
            +S    +C++V+   +L+    W LF  RS     + +  F    K +T +AKKG   F   W   VD + + G+ +V S+        V +W  G++          E +  +       +   V+ D+ + +    +    WILN   WV+SG+S  VK   G V T  G V    KS+  K  ++    + E+  +I   A+  E    LKIE G K RLII       +   Y +  V   + K  P +S+F +  ++        ++   ++ L + P DA  FD+R++  E+ +          +  +      E +         +F +    DG +   +HG+ SG   T++ DSV++  R  + L  +    G  ++     + QGDD   ++   +   +        G+  H  KN ++    E+LR  ++  + +V+GYL+R++  LL+ DPIK      +++++E+V +L  L+ RGAD+  V         + L + G       +     +P   GG G+
Sbjct:  106 ISLFVSVCSDVVRNDILSVLSAWGLFRNRS-----VSKGAFQDRCKELTGIAKKGGVRFHVRWSDFVDWDQFLGYTSVRSAPEGLVASTVDEWCVGDVVRTGTDDPDGEKYRTIYQQRAGAISDAVAKDLSTRSP---IPLNAWILNTAGWVTSGSSKGVKAEVGYVDTHTGTVTDGGKSRSVKTAISQSMGLSEVRQLITKDAKDGEYSAALKIEPGGKYRLIISAPLQQQLRQGYVNSHVERGIAKACPWASMFYSEGRREKAEADMSVMSKRRAGLCHLPADASKFDRRVSKFEIVTVIDAIVEGCRQSGWSGPAYDEFMKICGTLTPDWFSKF-HADGIEYMWEHGVPSGVRWTSMMDSVVNGLRFETCLTDLRDNYGV-DVGVAEFMAQGDDMALVTDLTIDAMIILAWYLHYGFEIHPLKNQVSFRHDEFLR--VIYDDGEVTGYLARRIVKLLYHDPIKAPVPNSLARVQERVKSLIDLVNRGADKERVLALATRQARESLAALGVQLDESEAGQYLHTPTPAGGCGV 628
The following BLAST results are available for this feature:
BLAST of SMED30018530 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018530 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018530 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018530 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018530 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018530 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018530 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018530 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1L3KF521.647e-5026.98Uncharacterized protein (Fragment) OS=Beihai toti-... [more]
A0A1L3KFB96.281e-4625.29RNA-directed RNA polymerase (Fragment) OS=Wenzhou ... [more]
A0A1L3KF121.958e-4226.20Uncharacterized protein (Fragment) OS=Beihai paphi... [more]
A0A1L3KF048.225e-2322.89RNA-directed RNA polymerase OS=Beihai sea slater v... [more]
A0A1L3KFB54.337e-2123.93RNA-directed RNA polymerase OS=Beihai toti-like vi... [more]
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BLAST of SMED30018530 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018530 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018530 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018530 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018530 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018530 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30018530 ID=SMED30018530|Name=SMED30018530|organism=Schmidtea mediterranea sexual|type=transcript|length=7922bp
TTTTTTTTTTTTTTTTTTAAAAAGAAATATTTATTTTTAAATAAATTGTA
CAACATACATTAATCGCTATAACGCAAAGGCAACACACCACGATATAAAG
CATCAACTAAACTATACTCAACATTCAGATTCTGCTTCACCAATTGATCG
GTTGTAACACTGTGTCGACTAAACAACGGAACCCAAAAATACAGCGCGAA
AAACCCATTCAGAATAGATACTTCTGCCGGTGAAAAACCCACTATAAGAG
GGCTGCGCAGATTGAGCTTACCTGCTAACCAATCCAAAAAGGTGGCTCGA
TGCCATCTTCCGTTTAAGCTAATTAACATTTTTAAAGATATTGGTTCAAT
TATTCCTTCTAATTTGCCTAAACAATCATTAAAAACGCAAAATTTGATGG
CATCAGCACAAATACTGCGCATGAAACTCAATTCCGATAACCACTTCGGT
ATCACATCACTTTTATGTGGAGCTTCAGCCATCTTACCCACTTTAAGGAT
TACCCCTGCCCGTACTTTTTGAACATAATCAACAACTAAATAAGGCTTAA
CTTCACCGTCGACCAAAATCTGGCCGATCATCTGTTTCTTCAGATTATCG
ATTTTGAAGTTCTTGCCCACCGCATTTACAACTAAGTCTAAATTTTGCCT
ATAAACGCCACTCACCATCGGTGCACCCAAAGATTCTGCTGAATCGTTCA
GATCCCTAAGCTTACACCAACGCGCAGATGACGACGAGCAAGAATCTTGA
TCTAACCATATTCCGGCGCCACCGCAAGCAGCAGGACTAAAAGCTATAGC
CAAAGAATGCTCAGGAGGAAAGGGTTTCCCTGGTGACATCAAAACCTTAT
GACAAACACTATAAATATAGTTAGATACAACAGAACGATCGGCGCCTCTG
GTTATTAATACGTTTAAAGCACCAACCTTCTCTCTCAACTTGGAAATCCC
CACGGCACCACCTCTCTTAATAGGATCACGAAATAACAACCCTGCCATTT
TCCTACTCAAATAACCAGACACTTTGTTCTCCTTAACAACTAACATTTTC
CTTAAGTATTCAGTCACGCCAATAGCAATAAAATTCTTTTCCTTATGCGC
GCCCCACCCTAATTTATTTACCATCTGGAAATGTAGACAAAGTCTGACAA
CCGAACTACTCATGCAATTAAAATCGTCGCCCTGCCCAACCGGACTGATC
TTTGTCATCTCCCTGTGCCCTAAAAACGCATCAACGCACCTTAATATCGA
TACATTTCTCGACACTGAAATTACGCTATCACCCAACGCCGTGTCAAAAT
AACCGCTCACCATACCATGATCCAACTTCAGATCTTGACCATCCACGTCA
CATAGTTGACCAAAATACTGATCCTCGGCTAACAAAACACTATTCAGCAA
TTCCGCCTTCAGCCCCTCGTCAAAAACAAACTTAGATAACGTGCGATACT
TCCACTTAAAATAGGACCTTAGCTCAGCCGTTGTTATCCTTTGGTCAAAG
GATGGAGCATCATAAGGATAAGCCAACACACTCTTAATACTTAGGAGCAT
TCTCCACTGGTTCCACATGTTGTATTGTTGGTTTAAATTCATGAATAAAC
TGCTGTGAGGATTGCCCTTCATTAGAGCCATACACACCCTGCCACTATAA
GAAGCATTAATATTAATAAAATCATCAACTTTAATAATCAATCGATTTTT
CCACCCTAATTCTATTTTTAAAACAGGCTTAAGTTCTAAACGCCTAGCTC
TATTATTTATTATATCAATGATCTCCTCAACGGTGTATTTTAGTGCTACA
TTAGCCTTATTCCCCTTTGACTTAACTACATCCCCGTCATCTGTTAAAAC
CCTTCCCTTCACCATGGACGCACCCGACGACACCCAATTATCAGGATTCA
ATATCCAGTTGTAAAAACTAACAACTTTATGATTGGCATTTGAAACTACG
TCTGATGACACAGGAGAAAACATATCATCCATAGTGTCATCCATTACTCT
ATCCCACAATTCAGGCTTAACGTGTTTAACTGATAGCTCTCCCCCTATCC
AATCAGGGACCTGCTTCTTAGTTTCATCAACTATAGAACTACCCACGTTA
AAACCGGCCCAAGTATTAAGATCCACAAGCGCGAACCAACTATCGAGAAA
ATCGCCCCTGCCTTTCTTAGCCAACACAGTGATCATCTTTCCTAAAGTTA
AAAAATCGTCGCGCTGCAATTCGCATAAAATATGACTACGCAATAAAAAT
AATAACCAATCGGTCAAAAGGTGTTCAGGCAGAACGTTAGCACACAAACA
AAAACAGCGGGAAACCTGGTAACATGCACCAACCCGACCTGTTGTCCAAA
AACAGTGAAACCCACCTGGGTTAACACTTTTTACAGCCTTAAGTTCTCGA
CAACGTCTGAAAACGGCTGGCAGTGCATCCAAACTTCTGAATTTAGATAA
TTTTATATGGGTTTTAATACTATATTGCTCTTCCATATCAACGTAGCCTG
CATCCCTACAAAAAGAATGGCCTTTCCTAAAAATGGCAGCTTTCTCTTTC
ATTATTTTGGACTTCGACCATATTAGATCACCTAAAAAATCAAAATGCTC
AGAAGCCATTTGGATTTGTTTGACAGCATTCGCCCTATTAACTGAAGAGT
TTAAGTACTGTAAATAAGTACGTTTATTTAAATCAACAGATATAAACCGA
TCGTTCGAAGCAGAATCCGAACACACTAAAACACAACCTAAATAAAAGCA
TAATATATCAATGTCCATATTAATAAAATCAATATTATAAGTGTCAATTG
TCAATGTTTTCACATTTTGGAATCTGCTCGGATTATGCGGAACCGAGCAT
ATTTGGAAAGGGCCGGAAATATTCGCTTTCAATATCTGAGGGAGGCACGA
CATTGCCAATGAACGCAGTAACGGTGGCAGGAGCAATAACAACACGATAA
GCAAGAGTTTGAGAATATAGAGCATCGAGAAATGCTGAGGCCACAAAACC
AACCAAAACTTTGCTTGCTTCAGAAACACACATGGGGAAAGGTTCGTATC
CCATAGGCAATGATCGAAACGAAGCACCTTTAGATTTGTAAACATTGTTA
AAGAACGGTGCATAGGCGATGGCAAAATTGAGTCCGGATCCAGGATTTTC
AAAATGGAACGGCAACTGTAGAACATAATTCCAACGGACCAGATATAAAT
AGACGCGTTGATTATCGTTTGTGGACTCGGGAAAGAAGCCCATTGTCAAT
TTTCTTAACATGATGTTATGTCGAAGGGAGGAGAATTCAAATGACATAAC
CAAATCGTAGAATGCACTTTTTGTGTTATCACGGCCATAGAAGCCATATT
GACCACGAACAATTGGTTCATCTTTAAAAGTTAAGATACTATCGGTAAAA
TTGATATTTGAATTGTATCTGCCCGCAACGAAAGAATTAACTCTAACACA
AAAAGCAATTGATCTTCTTGCGAATTCCGCGTTGTATAGAGCAGCAACAA
CAGCTCTCGTGGTGACTGGAGGTGGCATTTTCTGATTCCAAAAAGGAGCG
TTGAATTGTATGCCCGATACGAACATCTCACTTAGAGCTGGCCTTACATA
ATTATCCATCCAAGTATCACATTGTCCACCAATGTTTAAAGGCCCTGGAT
CACCCTGAAATCTATCATAAATAAGATACTTGTTTGGATATGTGCATCCG
GATATTTGGCGAAGGTTGTCTGTTGTGGCAGCACACATTAAACCCTGTTC
GCGCAACGATAAACATAACCCAGGCATCCCGGAGGCGAGGGAATTTGTTG
AGTACTCCTCCATTATGGTAACCCAACCCCGCATCACTAAAAAATCCATC
ACTATAGATCTATTCCCTATTCTAAAATTAGCCTCTAATGGTCGAACTGA
ATACCAGGAAGAATAATTATCTTTGTTAATTATAGCAGCATTATCCATGC
CCTGCGCTGGATTACCATAACAATCCTCAATTATACTATGAACCCTATCA
CACAATACACGATCTGTCGACTTGATTATCATGCTTGGCACATTCCAGGG
TCGAGGAGGAGCCCACCACTCACCAAACATATAAGCGCCAACCATCAGGT
TTTGATCATCATTCCACCCCTTAGTTAGCGCAATTTTAGGATGCCCCCAG
ACGCAAGAAAAACTTTTCGCTATACGCAAAACAGTTGCCCTAGCCGAAGC
ATGGCCGTATACTTCCTCCCAAGCCCTTATCTCTGCGCAAGTGGCTGCTT
CCCAAGCGTGGCGACCCACATCAGTATTTAGATGCGGAATAAAAACTGCG
CAAGTATTAAAATTGACACCCCCCTGTGCTTGGTTGTTCCTTGTGACAAG
TGGAGTATTGAAATCGCATCCCACTGTGAAAGTTGTTCCCGGATTGGCTG
GATCAATAACATACTTCAAATTCAAATTGTTGGAAGTGTTCATATCTGTA
ACAACAAACAGACACTTTTTATAAGGCCCCGGAACCCTAACAGCATTAGC
AACTTGATAATATGGCGGATCAAACCTATCGCCAACGTCGGTCCACCATC
CTTGAGCCGGCACGTATGTTGCTTCAGCATAATTATAAACATAATGCTTC
ACACTGAACGTTCGCAGCACATAGGGATATTGCATGTGGTTAAACATTCT
CCTGATGATCATGGCCGGATTACCTAATTCTTCAAGAGTCACAAAAACGA
TTGCGACGGCTGTATCTTCATCACGACTATTCGGCCACCAATTATTCACT
GTGAAAGCCGGCGTCCAAGGCGAATCTGACATGCCGCAAACCTCCTTAAC
AAACAGATCGTAACCGCACATTCTACACTCTATCAATCCGGAATTGTCTC
TAGCAAAAGGAAAAGCGGTTTGCAAGGGTATTTGCCAATCCGGAGAACTC
AACGATGAGGCCAAACCATTCCACCATTGAGTATACTCATCACCTGGAAC
TGGATACATTGTCATAACATCTAAAACCATGCGCATTAAAGTTTCGCAAA
ATGCATAACCTGTTCGTTGGGTTAGATCCCTCAACACCATACTAAAAAAT
CTAGTTAACATGTCCGAACTGAAAAAGCTGACGTTCAGTCTCAAGGTGCT
GGAAAAAGCAGTTAAATTAGCCCCAGTTTTCACCGCTGCAACTAAACTGT
CCATACTAAAAGTAGTCCCCAGCGGAACGCATTCTTCAGGGCTGATGAAA
TCAATCATCCAAGTAGGCAATCTTGAATTCCACCATCTTAGATCACGATT
ATTATCTCTGATTGCACCAGGCGATATGCTCATTGTGACTGGCAACATCG
CACAACCAGGCATCACATTCATGTTTGAAACGTCTTCTTGCCCGTATACA
GCATGCAGTTCATCTAATTGAGTAATGATATTTGTCAATAAATCTGATAG
TGACGCTGCAGTTCCTGAAAAACTTGTTATTTGCTCTGATTCATACATTA
GCATCAACGCTTGAGTTTGAGAGAAAATGCCACTTAATCTAGCAGCGGCA
ACTGTTGTATCCATAGCTGCGGCCTCAGAACTGTCTATTGCAGGAGCGTC
ACCCACCACTTTCTTCACTGCAGGTTCATCATACAATGCAGGAGCGTCAC
CGACAATCTTTTTTGCGTCCGGATGATCATAATGAACCACAACTCTATCT
ATTGGTGCTCTCTCAGGTGCGTCGCCAACAACCTTTCTAAATATTGGTGA
ACGATGTGCCGCATATCTTAACCCCAACTGAGCTGCGCCCCGAGCAAAGC
CCATGGCACCGCCAGCTAGCACGGCTTTCCAATCCGGAGCTTGTTGTATT
GTTGTTTGATTATACGTGACACCCGGCTGAGGGTTGTCATCAATAATAAC
TTCAGGCGCATCACCAATCATTTTTCGAGTTTGATATTTCACCTGGTTTT
GCATCGTGCGATACGCTTGTCCTTTTTGCTCACGTCTTTCCTCCCTATCA
CCACTGTTCGCTCTCTCGAAGAACATCCTTCTTGTTAAGTCTATAACATT
CCCACTATTGGCAGAAACCCCTCTCAGTTGCCTTGAGTTGGCAGACCCTT
CGAACCCTAAATCACGAGGAGCAAAACCCATCGCCATATTAGATAATGTG
TAATTAGCATCGCGGGCGGCAATTTTATTTCTGCTCTCATTATGTATTCC
GAAAGATTGATTGATCGCATCGGCCGGTAGGATTGATTTGTTGATGCCAT
TATAGTAATCATTCAATGATGAGACATTGGATTGAACAATGGTGCTTCTG
TCTCCTAAAGATGATGTTGCTCTCCTTTTTGCACGTGATCGTTGCGAGTC
ACCATAATCCAATGAAGGCAAAACAAAATTACCTCCTTGGTTCATTGTTG
ACTGAGGTGGCCTTAATATCACTGAATTTTGTGATGTTGATGATCCGCTG
CTCGGTCCAATTGATTCGTAACTAATAGCTCTCTGGTTCGAAGCACTATC
CGACGGCGCTAACGAAGACATACTCGCTATTGAATCATACGAATTTGATC
TATTGAATATATGCGGCAATATCTTTCCTGTGTTAATGTATTGCGCCGCT
TCTGCCACAGTTGGAGTCATTGTCATTGATTGGGCATTTGGATTTATGTT
GTATCCCAAACTCAACGGTGCTCTAATCACTCTTTTTTGATCTGGTTGAC
CTGACAATGTGGAGAGTGCCGCTTCGTTGTTGTTCCTGCGAGCCGCCATC
TTGTCTAGCACCGGATCCATGCTCGCTGGGAGGCTTTGCACTTGTACTGG
GACGTTGGTCGGCAATATGTCCTGCATTATTGCCAACTTTTGCGATTGGA
ACTGGTTTTGTGATAAAATGTTCTGGTCCTGGGGTAGAAGTGATCGCATG
CTGCCTGTTCCTGAAACGCTGCTTGGGGTCAGACTCCTTGTAAACTCGCT
TCCACCAATTGATAAAGGATGCGAACGTTGATCTGGCCCACTCAGGGAAG
GAAGCTGGCCCGTGTGTGTCAATCCAAACCTTGTCCTGTCGTCTTGTGAA
TTGGGTTGCTCGATCATAAGCGGATTCGAATGTTGCCTCGACTGCAACTG
TGAATAAGCATGCCCCTCGCTCGGATATTCGCTGCCGGAAAGTATCGACT
GCGTTGGAGGTTGCGAATATCCCTGCGATATTGCCAACTGCTGGGTTTGA
AGATTGGCAGGTTGCGATGTAATACCGCTCAGGCTTTCCTCCGCTCTTAA
TAGTGGTAGAGATTGGCGCTGAATGTTCTCTTGTTCTCGCAGTTGGCCCT
GAATCGATTGAAAATTGTGGGCTGGTTGGTCTGTAGCTGACTGAGGGGCT
AGATGGGACAGTTGAGTTATGCCCATCAAAGGTTGAGATGATGGGATCTG
ATGTTGTTGTGTCGTTTGCTCTCGCCGATTCAATTCTGATATTAACGAAT
CCCCAATCTGCAGTGGCTGGGTCATACCTTGGGATATCCCATCTAGTGCG
CTTGGGTCGCTTGTCTCTAATGGCAGCTGGTCCTTGTACGGCGTCGCCTT
CGAATTCAACGTAGCCATACTTCGCTGCATCTGGTCTATTTGTGGCCACA
TATCTGTCAAAGACACTCCAGTCTGCGACAGCCTTCCACTCAGAATGTTC
TCTAAGTGGCGTCGGTGTTGTTTGTCGTTTGCGGCTTGGTGTAGTTGAGT
TGTTAGCCAATGAGTTTGTTGTTGCCATTCGGGTGCGTCTCCTACTATTT
TACGAACGATTGGATCGATTATTGAAGGAAGTACTGCTCCGGCTATACCT
AAAAGTGCTGGAATGAATGCCAGTTTAAATATCTTTTGTTGAATTCAGGC
AAATATTTCCTAAATCAATTATTTCTTGACAAATTGGTGAAAGAACTCTT
TTATTGCTATAAATATAAAAGAAACTTGAACCGATTATTCCACTGATTAT
GCCTTTTAATTGTAAGAATAAT
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protein sequence of SMED30018530-orf-1

>SMED30018530-orf-1 ID=SMED30018530-orf-1|Name=SMED30018530-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=352bp
MATTNSLANNSTTPSRKRQTTPTPLREHSEWKAVADWSVFDRYVATNRPD
AAKYGYVEFEGDAVQGPAAIRDKRPKRTRWDIPRYDPATADWGFVNIRIE
SARANDTTTSDPIISTFDGHNSTVPSSPSVSYRPTSPQFSIDSGPTARTR
EHSAPISTTIKSGGKPERYYIATCQSSNPAVGNIAGIFATSNAVDTFRQR
ISERGACLFTVAVEATFESAYDRATQFTRRQDKVWIDTHGPASFPEWARS
TFASFINWWKRVYKESDPKQRFRNRQHAITSTPGPEHFITKPVPIAKVGN
NAGHIADQRPSTSAKPPSEHGSGARQDGGSQEQQRSGTLHIVRSTRSKKS
D*
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protein sequence of SMED30018530-orf-2

>SMED30018530-orf-2 ID=SMED30018530-orf-2|Name=SMED30018530-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1039bp
MFYSCRSILKILDPDSILPSPMHRSLTMFTNLKVLRFDHCLWDTNLSPCV
FLKQAKFWLVLWPQHFSMLYILKLLLIVLLLLLPPLLRSLAMSCLPQILK
ANISGPFQICSVPHNPSRFQNVKTLTIDTYNIDFINMDIDILCFYLGCVL
VCSDSASNDRFISVDLNKRTYLQYLNSSVNRANAVKQIQMASEHFDFLGD
LIWSKSKIMKEKAAIFRKGHSFCRDAGYVDMEEQYSIKTHIKLSKFRSLD
ALPAVFRRCRELKAVKSVNPGGFHCFWTTGRVGACYQVSRCFCLCANVLP
EHLLTDWLLFLLRSHILCELQRDDFLTLGKMITVLAKKGRGDFLDSWFAL
VDLNTWAGFNVGSSIVDETKKQVPDWIGGELSVKHVKPELWDRVMDDTMD
DMFSPVSSDVVSNANHKVVSFYNWILNPDNWVSSGASMVKGRVLTDDGDV
VKSKGNKANVALKYTVEEIIDIINNRARRLELKPVLKIELGWKNRLIIKV
DDFININASYSGRVCMALMKGNPHSSLFMNLNQQYNMWNQWRMLLSIKSV
LAYPYDAPSFDQRITTAELRSYFKWKYRTLSKFVFDEGLKAELLNSVLLA
EDQYFGQLCDVDGQDLKLDHGMVSGYFDTALGDSVISVSRNVSILRCVDA
FLGHREMTKISPVGQGDDFNCMSSSVVRLCLHFQMVNKLGWGAHKEKNFI
AIGVTEYLRKMLVVKENKVSGYLSRKMAGLLFRDPIKRGGAVGISKLREK
VGALNVLITRGADRSVVSNYIYSVCHKVLMSPGKPFPPEHSLAIAFSPAA
CGGAGIWLDQDSCSSSSARWCKLRDLNDSAESLGAPMVSGVYRQNLDLVV
NAVGKNFKIDNLKKQMIGQILVDGEVKPYLVVDYVQKVRAGVILKVGKMA
EAPHKSDVIPKWLSELSFMRSICADAIKFCVFNDCLGKLEGIIEPISLKM
LISLNGRWHRATFLDWLAGKLNLRSPLIVGFSPAEVSILNGFFALYFWVP
LFSRHSVTTDQLVKQNLNVEYSLVDALYRGVLPLRYSD*
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protein sequence of SMED30018530-orf-3

>SMED30018530-orf-3 ID=SMED30018530-orf-3|Name=SMED30018530-orf-3|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1573bp
MWPQIDQMQRSMATLNSKATPYKDQLPLETSDPSALDGISQGMTQPLQIG
DSLISELNRREQTTQQHQIPSSQPLMGITQLSHLAPQSATDQPAHNFQSI
QGQLREQENIQRQSLPLLRAEESLSGITSQPANLQTQQLAISQGYSQPPT
QSILSGSEYPSEGHAYSQLQSRQHSNPLMIEQPNSQDDRTRFGLTHTGQL
PSLSGPDQRSHPLSIGGSEFTRSLTPSSVSGTGSMRSLLPQDQNILSQNQ
FQSQKLAIMQDILPTNVPVQVQSLPASMDPVLDKMAARRNNNEAALSTLS
GQPDQKRVIRAPLSLGYNINPNAQSMTMTPTVAEAAQYINTGKILPHIFN
RSNSYDSIASMSSLAPSDSASNQRAISYESIGPSSGSSTSQNSVILRPPQ
STMNQGGNFVLPSLDYGDSQRSRAKRRATSSLGDRSTIVQSNVSSLNDYY
NGINKSILPADAINQSFGIHNESRNKIAARDANYTLSNMAMGFAPRDLGF
EGSANSRQLRGVSANSGNVIDLTRRMFFERANSGDREERREQKGQAYRTM
QNQVKYQTRKMIGDAPEVIIDDNPQPGVTYNQTTIQQAPDWKAVLAGGAM
GFARGAAQLGLRYAAHRSPIFRKVVGDAPERAPIDRVVVHYDHPDAKKIV
GDAPALYDEPAVKKVVGDAPAIDSSEAAAMDTTVAAARLSGIFSQTQALM
LMYESEQITSFSGTAASLSDLLTNIITQLDELHAVYGQEDVSNMNVMPGC
AMLPVTMSISPGAIRDNNRDLRWWNSRLPTWMIDFISPEECVPLGTTFSM
DSLVAAVKTGANLTAFSSTLRLNVSFFSSDMLTRFFSMVLRDLTQRTGYA
FCETLMRMVLDVMTMYPVPGDEYTQWWNGLASSLSSPDWQIPLQTAFPFA
RDNSGLIECRMCGYDLFVKEVCGMSDSPWTPAFTVNNWWPNSRDEDTAVA
IVFVTLEELGNPAMIIRRMFNHMQYPYVLRTFSVKHYVYNYAEATYVPAQ
GWWTDVGDRFDPPYYQVANAVRVPGPYKKCLFVVTDMNTSNNLNLKYVID
PANPGTTFTVGCDFNTPLVTRNNQAQGGVNFNTCAVFIPHLNTDVGRHAW
EAATCAEIRAWEEVYGHASARATVLRIAKSFSCVWGHPKIALTKGWNDDQ
NLMVGAYMFGEWWAPPRPWNVPSMIIKSTDRVLCDRVHSIIEDCYGNPAQ
GMDNAAIINKDNYSSWYSVRPLEANFRIGNRSIVMDFLVMRGWVTIMEEY
STNSLASGMPGLCLSLREQGLMCAATTDNLRQISGCTYPNKYLIYDRFQG
DPGPLNIGGQCDTWMDNYVRPALSEMFVSGIQFNAPFWNQKMPPPVTTRA
VVAALYNAEFARRSIAFCVRVNSFVAGRYNSNINFTDSILTFKDEPIVRG
QYGFYGRDNTKSAFYDLVMSFEFSSLRHNIMLRKLTMGFFPESTNDNQRV
YLYLVRWNYVLQLPFHFENPGSGLNFAIAYAPFFNNVYKSKGASFRSLPM
GYEPFPMCVSEASKVLVGFVASAFLDALYSQTLAYRVVIAPATVTAFIGN
VVPPSDIESEYFRPFPNMLGSA*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000017photoreceptor neuron
PLANA:0000418head