60S ribosomal protein L30

Overview
Name60S ribosomal protein L30
Smed IDSMED30018504
Length (bp)459
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of 60S ribosomal protein L30 (SMED30018504) t-SNE clustered cells

Violin plots show distribution of expression levels for 60S ribosomal protein L30 (SMED30018504) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 60S ribosomal protein L30 (SMED30018504) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 60S ribosomal protein L30 (SMED30018504) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30018504

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 13

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30018504SMESG000022893.1 SmedASXL_018663SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
pharynxSMED30018504SMESG000022893.1 dd_Smed_v4_111_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30018504SMESG000022893.1 dd_Smed_v4_111_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30018504SMESG000022893.1 dd_Smed_v4_111_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30018504SMESG000022893.1 dd_Smed_v4_111_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30018504SMESG000022893.1 dd_Smed_v4_111_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30018504SMESG000022893.1 dd_Smed_v4_111_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30018504SMESG000022893.1 dd_Smed_v4_111_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30018504SMESG000022893.1 dd_Smed_v4_111_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30018504SMESG000022893.1 dd_Smed_v4_111_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gamma neoblastSMED30018504SMESG000022893.1 dd_Smed_v6_111_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
progenitor cellSMED30018504SMESG000022893.1 dd_Smed_v6_111_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30018504SMESG000022893.1 dd_Smed_v6_111_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Human
Match: RPL30 (ribosomal protein L30 [Source:HGNC Symbol;Acc:HGNC:10333])

HSP 1 Score: 124.405 bits (311), Expect = 4.455e-37
Identity = 55/94 (58.51%), Postives = 74/94 (78.72%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            +I SRL L +K+GKY LG  QTLK IR GKA+L+I+A N   L KS++EYY+ML++ G+HH+ GNN +LGTACGK ++V  +AI DPGDSDI++
Sbjct:   13 SINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIR 106
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Human
Match: RPL30 (ribosomal protein L30 [Source:HGNC Symbol;Acc:HGNC:10333])

HSP 1 Score: 124.405 bits (311), Expect = 4.640e-37
Identity = 55/94 (58.51%), Postives = 74/94 (78.72%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            +I SRL L +K+GKY LG  QTLK IR GKA+L+I+A N   L KS++EYY+ML++ G+HH+ GNN +LGTACGK ++V  +AI DPGDSDI++
Sbjct:   13 SINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIR 106
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Human
Match: RPL30 (ribosomal protein L30 [Source:HGNC Symbol;Acc:HGNC:10333])

HSP 1 Score: 124.405 bits (311), Expect = 4.640e-37
Identity = 55/94 (58.51%), Postives = 74/94 (78.72%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            +I SRL L +K+GKY LG  QTLK IR GKA+L+I+A N   L KS++EYY+ML++ G+HH+ GNN +LGTACGK ++V  +AI DPGDSDI++
Sbjct:   13 SINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIR 106
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Human
Match: RPL30 (ribosomal protein L30 [Source:HGNC Symbol;Acc:HGNC:10333])

HSP 1 Score: 83.9593 bits (206), Expect = 2.377e-21
Identity = 45/94 (47.87%), Postives = 57/94 (60.64%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            +I SRL L +K+GKY LG  QTLK IR GKA+L+I+A N   L                    GNN +LGTACGK ++V  +AI DPGDSDI++
Sbjct:   13 SINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPAL-------------------SGNNIELGTACGKYYRVCTLAIIDPGDSDIIR 87
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Human
Match: RPL30 (ribosomal protein L30 [Source:HGNC Symbol;Acc:HGNC:10333])

HSP 1 Score: 64.6994 bits (156), Expect = 2.212e-14
Identity = 25/42 (59.52%), Postives = 35/42 (83.33%), Query Frame = 2 
Query:  281 MLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            ML++ G+HH+ GNN +LGTACGK ++V  +AI DPGDSDI++
Sbjct:    1 MLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIR 42
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Celegans
Match: rpl-30 (Ribosomal Protein, Large subunit [Source:UniProtKB/TrEMBL;Acc:I2HAJ2])

HSP 1 Score: 127.872 bits (320), Expect = 8.334e-39
Identity = 54/93 (58.06%), Postives = 78/93 (83.87%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDIL 403
            NI SRL++ +KTG+Y LG  QTLK++ +GKA+L+I+A N  PL KS++EYY+ML++ G+HH++GNN +LGTACG+LF+V  +A+TD GDSDI+
Sbjct:   15 NINSRLSMVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYNGNNIELGTACGRLFRVCTLAVTDAGDSDII 107
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Celegans
Match: rpl-30 (Ribosomal Protein, Large subunit [Source:UniProtKB/TrEMBL;Acc:I2HAJ2])

HSP 1 Score: 117.857 bits (294), Expect = 4.205e-35
Identity = 49/86 (56.98%), Postives = 72/86 (83.72%), Query Frame = 2 
Query:  146 LAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDIL 403
            + +KTG+Y LG  QTLK++ +GKA+L+I+A N  PL KS++EYY+ML++ G+HH++GNN +LGTACG+LF+V  +A+TD GDSDI+
Sbjct:    1 MVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYNGNNIELGTACGRLFRVCTLAVTDAGDSDII 86
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Celegans
Match: rpl-30 (Ribosomal Protein, Large subunit [Source:UniProtKB/TrEMBL;Acc:I2HAJ2])

HSP 1 Score: 117.857 bits (294), Expect = 4.205e-35
Identity = 49/86 (56.98%), Postives = 72/86 (83.72%), Query Frame = 2 
Query:  146 LAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDIL 403
            + +KTG+Y LG  QTLK++ +GKA+L+I+A N  PL KS++EYY+ML++ G+HH++GNN +LGTACG+LF+V  +A+TD GDSDI+
Sbjct:    1 MVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYNGNNIELGTACGRLFRVCTLAVTDAGDSDII 86
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Fly
Match: RpL30 (gene:FBgn0086710 transcript:FBtr0302491)

HSP 1 Score: 123.635 bits (309), Expect = 3.840e-37
Identity = 54/95 (56.84%), Postives = 76/95 (80.00%), Query Frame = 2 
Query:  134 SRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK-IET 415
            +RLAL +K+GKYCLG  QTLKT+R GKA+L+++A N   L KS++EYY+ML++  + H+ G N +LGTACGK F+V  ++ITDPGDSDI++ +ET
Sbjct:   16 ARLALVMKSGKYCLGYKQTLKTLRQGKAKLVLIASNTPALRKSEIEYYAMLAKTEVQHYSGTNIELGTACGKYFRVCTLSITDPGDSDIIRSLET 110
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Fly
Match: RpL30 (gene:FBgn0086710 transcript:FBtr0081181)

HSP 1 Score: 123.635 bits (309), Expect = 3.840e-37
Identity = 54/95 (56.84%), Postives = 76/95 (80.00%), Query Frame = 2 
Query:  134 SRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK-IET 415
            +RLAL +K+GKYCLG  QTLKT+R GKA+L+++A N   L KS++EYY+ML++  + H+ G N +LGTACGK F+V  ++ITDPGDSDI++ +ET
Sbjct:   16 ARLALVMKSGKYCLGYKQTLKTLRQGKAKLVLIASNTPALRKSEIEYYAMLAKTEVQHYSGTNIELGTACGKYFRVCTLSITDPGDSDIIRSLET 110
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Fly
Match: RpL30 (gene:FBgn0086710 transcript:FBtr0340319)

HSP 1 Score: 123.635 bits (309), Expect = 3.840e-37
Identity = 54/95 (56.84%), Postives = 76/95 (80.00%), Query Frame = 2 
Query:  134 SRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK-IET 415
            +RLAL +K+GKYCLG  QTLKT+R GKA+L+++A N   L KS++EYY+ML++  + H+ G N +LGTACGK F+V  ++ITDPGDSDI++ +ET
Sbjct:   16 ARLALVMKSGKYCLGYKQTLKTLRQGKAKLVLIASNTPALRKSEIEYYAMLAKTEVQHYSGTNIELGTACGKYFRVCTLSITDPGDSDIIRSLET 110
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Zebrafish
Match: rpl30 (ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657])

HSP 1 Score: 120.553 bits (301), Expect = 1.051e-35
Identity = 53/94 (56.38%), Postives = 73/94 (77.66%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            +I SRL L +K+GKY LG  Q+ K IR GKA+L+I+A N   L KS++EYY+ML++ G+HH+ GNN +LGTACGK ++V  +AI DPGDSDI++
Sbjct:   13 SINSRLQLVMKSGKYVLGYKQSQKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIR 106
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Zebrafish
Match: rpl30 (ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657])

HSP 1 Score: 120.553 bits (301), Expect = 1.051e-35
Identity = 53/94 (56.38%), Postives = 73/94 (77.66%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            +I SRL L +K+GKY LG  Q+ K IR GKA+L+I+A N   L KS++EYY+ML++ G+HH+ GNN +LGTACGK ++V  +AI DPGDSDI++
Sbjct:   13 SINSRLQLVMKSGKYVLGYKQSQKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIR 106
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Zebrafish
Match: rpl30 (ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657])

HSP 1 Score: 111.694 bits (278), Expect = 1.778e-32
Identity = 48/85 (56.47%), Postives = 67/85 (78.82%), Query Frame = 2 
Query:  152 VKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            +K+GKY LG  Q+ K IR GKA+L+I+A N   L KS++EYY+ML++ G+HH+ GNN +LGTACGK ++V  +AI DPGDSDI++
Sbjct:    1 MKSGKYVLGYKQSQKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIR 85
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Xenopus
Match: rpl30 (ribosomal protein L30 [Source:NCBI gene;Acc:448690])

HSP 1 Score: 124.79 bits (312), Expect = 3.228e-37
Identity = 55/94 (58.51%), Postives = 74/94 (78.72%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            +I SRL L +K+GKY LG  QTLK IR GKA+L+I+A N   L KS++EYY+ML++ G+HH+ GNN +LGTACGK ++V  +AI DPGDSDI++
Sbjct:   13 SINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIR 106
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Xenopus
Match: rpl30 (ribosomal protein L30 [Source:NCBI gene;Acc:448690])

HSP 1 Score: 124.79 bits (312), Expect = 3.411e-37
Identity = 55/94 (58.51%), Postives = 74/94 (78.72%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            +I SRL L +K+GKY LG  QTLK IR GKA+L+I+A N   L KS++EYY+ML++ G+HH+ GNN +LGTACGK ++V  +AI DPGDSDI++
Sbjct:    9 SINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIR 102
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Xenopus
Match: rpl30 (ribosomal protein L30 [Source:NCBI gene;Acc:448690])

HSP 1 Score: 117.472 bits (293), Expect = 2.101e-34
Identity = 55/96 (57.29%), Postives = 74/96 (77.08%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILKIE 412
            +I SRL L +K+GKY LG  QTLK IR GKA+L+I+A N   L KS++EYY+ML++ G+HH+ GNN +LGTACGK ++V  +AI DPG +DIL I+
Sbjct:    9 SINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPG-TDILDIK 103
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Mouse
Match: Rpl30 (ribosomal protein L30 [Source:MGI Symbol;Acc:MGI:98037])

HSP 1 Score: 124.405 bits (311), Expect = 3.186e-37
Identity = 55/94 (58.51%), Postives = 74/94 (78.72%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            +I SRL L +K+GKY LG  QTLK IR GKA+L+I+A N   L KS++EYY+ML++ G+HH+ GNN +LGTACGK ++V  +AI DPGDSDI++
Sbjct:   13 SINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIR 106
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Mouse
Match: Rpl30 (ribosomal protein L30 [Source:MGI Symbol;Acc:MGI:98037])

HSP 1 Score: 124.405 bits (311), Expect = 3.186e-37
Identity = 55/94 (58.51%), Postives = 74/94 (78.72%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            +I SRL L +K+GKY LG  QTLK IR GKA+L+I+A N   L KS++EYY+ML++ G+HH+ GNN +LGTACGK ++V  +AI DPGDSDI++
Sbjct:   13 SINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIR 106
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Mouse
Match: Rpl30 (ribosomal protein L30 [Source:MGI Symbol;Acc:MGI:98037])

HSP 1 Score: 115.546 bits (288), Expect = 6.425e-34
Identity = 50/85 (58.82%), Postives = 68/85 (80.00%), Query Frame = 2 
Query:  152 VKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            +K+GKY LG  QTLK IR GKA+L+I+A N   L KS++EYY+ML++ G+HH+ GNN +LGTACGK ++V  +AI DPGDSDI++
Sbjct:    1 MKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIR 85
[Close]
BLAST of 60S ribosomal protein L30 vs. UniProt/SwissProt
Match: sp|P58375|RL30_SPOFR (60S ribosomal protein L30 OS=Spodoptera frugiperda OX=7108 GN=RpL30 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.593e-42
Identity = 60/93 (64.52%), Postives = 80/93 (86.02%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDIL 403
            +I SRLAL +K+GKYCLG  QTLKT+R GKA+L+I+AKNA PL KS++EYY++L++ G+HH+ GNN +LGTACGK ++V  +AITDPGDSDI+
Sbjct:   13 SINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 105
[Close]
BLAST of 60S ribosomal protein L30 vs. UniProt/SwissProt
Match: sp|Q9UTP0|RL30B_SCHPO (60S ribosomal protein L30-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl3002 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.779e-38
Identity = 60/93 (64.52%), Postives = 75/93 (80.65%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDIL 403
             I S+LAL +K+GKY LG   TLKT+RSGKA+LI++A NA PL KS++EYY+MLSR  +HH+ GNN DLGTACGKLF+V  +A+ D GDSDIL
Sbjct:   23 TINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLRKSELEYYAMLSRCSVHHYSGNNIDLGTACGKLFRVGVLAVIDAGDSDIL 115
[Close]
BLAST of 60S ribosomal protein L30 vs. UniProt/SwissProt
Match: sp|P58374|RL30_BRABE (60S ribosomal protein L30 OS=Branchiostoma belcheri OX=7741 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.269e-38
Identity = 57/94 (60.64%), Postives = 76/94 (80.85%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            +I SRL L +K+GKY LGL +TLK +R GKA+LII+A N   L KS++EYY+ML++ G+HH+ GNN +LGTACGK F+V  +AITDPGDSDI++
Sbjct:   10 SINSRLQLVMKSGKYVLGLKETLKVLRQGKAKLIIIANNTPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYFRVCTLAITDPGDSDIIR 103
[Close]
BLAST of 60S ribosomal protein L30 vs. UniProt/SwissProt
Match: sp|P52808|RL30A_SCHPO (60S ribosomal protein L30-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl3001 PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 5.731e-37
Identity = 58/93 (62.37%), Postives = 74/93 (79.57%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDIL 403
             I ++LAL +K+GKY LG   TLKT+RSGKA+LI++A N  PL KS++EYY+MLS+  +HH+ G N DLGTACGKLF+V  +AITD GDSDIL
Sbjct:   15 TINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSELEYYAMLSKANVHHYAGTNIDLGTACGKLFRVGVLAITDAGDSDIL 107
[Close]
BLAST of 60S ribosomal protein L30 vs. UniProt/SwissProt
Match: sp|P67884|RL30_OPHHA (60S ribosomal protein L30 OS=Ophiophagus hannah OX=8665 GN=RPL30 PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.472e-36
Identity = 55/94 (58.51%), Postives = 74/94 (78.72%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            +I SRL L +K+GKY LG  QTLK IR GKA+L+I+A N   L KS++EYY+ML++ G+HH+ GNN +LGTACGK ++V  +AI DPGDSDI++
Sbjct:   13 SINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIR 106
[Close]
BLAST of 60S ribosomal protein L30 vs. TrEMBL
Match: F1LHC0 (60S ribosomal protein L30 OS=Ascaris suum OX=6253 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.365e-41
Identity = 60/94 (63.83%), Postives = 82/94 (87.23%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            NI +RLA+ +K+GKYCLG  QTLKT+R+GKA+L+I+A N  PL KS++EYY+ML++ G+HH++GNN +LGTACGKLF+V  M+ITDPGDSDI++
Sbjct:   12 NINARLAMVMKSGKYCLGYKQTLKTLRAGKAKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYNGNNIELGTACGKLFRVCTMSITDPGDSDIIR 105
[Close]
BLAST of 60S ribosomal protein L30 vs. TrEMBL
Match: A0A0M3HY33 (Ribosomal_L7Ae domain-containing protein OS=Ascaris lumbricoides OX=6252 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.365e-41
Identity = 60/94 (63.83%), Postives = 82/94 (87.23%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            NI +RLA+ +K+GKYCLG  QTLKT+R+GKA+L+I+A N  PL KS++EYY+ML++ G+HH++GNN +LGTACGKLF+V  M+ITDPGDSDI++
Sbjct:   12 NINARLAMVMKSGKYCLGYKQTLKTLRAGKAKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYNGNNIELGTACGKLFRVCTMSITDPGDSDIIR 105
[Close]
BLAST of 60S ribosomal protein L30 vs. TrEMBL
Match: F1LGY8 (60S ribosomal protein L30 OS=Ascaris suum OX=6253 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 5.460e-41
Identity = 60/94 (63.83%), Postives = 82/94 (87.23%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            NI +RLA+ +K+GKYCLG  QTLKT+R+GKA+L+I+A N  PL KS++EYY+ML++ G+HH++GNN +LGTACGKLF+V  M+ITDPGDSDI++
Sbjct:   40 NINARLAMVMKSGKYCLGYKQTLKTLRAGKAKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYNGNNIELGTACGKLFRVCTMSITDPGDSDIIR 133
[Close]
BLAST of 60S ribosomal protein L30 vs. TrEMBL
Match: A6YMS8 (Large subunit ribosomal protein 30 (Fragment) OS=Pristionchus sp. 15 RS5229 OX=452809 GN=rpl-30 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.135e-40
Identity = 60/94 (63.83%), Postives = 81/94 (86.17%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            NI SRL + +K+GKYCLG  QTLKT+RSGKA+LII+A N  P+ KS++EYY+ML++ G+HH++GNN +LGTACGKLF+V  +A+TDPGDSDI++
Sbjct:   10 NINSRLGMVMKSGKYCLGYKQTLKTLRSGKAKLIIIASNTPPIRKSEIEYYAMLAKTGVHHYNGNNIELGTACGKLFRVCTLAVTDPGDSDIVR 103
[Close]
BLAST of 60S ribosomal protein L30 vs. TrEMBL
Match: A0A0M3JT28 (60S ribosomal protein L30 (inferred by orthology to a human protein) OS=Anisakis simplex OX=6269 GN=ASIM_LOCUS10719 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.154e-40
Identity = 59/94 (62.77%), Postives = 82/94 (87.23%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            NI +RLA+ +K+GK+CLG  QTLKT+R+GKA+L+I+A N  PL KS++EYY+ML++ G+HH++GNN +LGTACGKLF+V  M+ITDPGDSDI++
Sbjct:   12 NINARLAMVMKSGKFCLGYKQTLKTLRAGKAKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYNGNNIELGTACGKLFRVCTMSITDPGDSDIIR 105
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Cavefish
Match: rpl30 (ribosomal protein L30 [Source:NCBI gene;Acc:103028338])

HSP 1 Score: 121.324 bits (303), Expect = 4.529e-36
Identity = 54/94 (57.45%), Postives = 73/94 (77.66%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            +I SRL L +K+GKY LG  Q+ K IR GKA+L+I+A N   L KS+VEYY+ML++ G+HH+ GNN +LGTACGK ++V  +AI DPGDSDI++
Sbjct:   13 SINSRLQLVMKSGKYVLGYRQSQKMIRQGKAKLVILANNCPALRKSEVEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIR 106
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007390.1 (pep scaffold:Pmarinus_7.0:GL487715:1154:2655:-1 gene:ENSPMAG00000006674.1 transcript:ENSPMAT00000007390.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 118.242 bits (295), Expect = 1.126e-35
Identity = 50/89 (56.18%), Postives = 70/89 (78.65%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGD 391
            +I SRL L +K+GKYCLG  QTLK IR GKA+L+++A N   L KS++EYY+ML++ G+HH+ GNN ++GTACGK ++V  +AI DPG+
Sbjct:   13 SINSRLQLVMKSGKYCLGYRQTLKMIRQGKAKLVLLANNCPALRKSEIEYYAMLAKTGVHHYSGNNIEMGTACGKYYRVCTLAIIDPGE 101
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Yeast
Match: RPL30 (Ribosomal 60S subunit protein L30; involved in pre-rRNA processing in the nucleolus; autoregulates splicing of its transcript; homologous to mammalian ribosomal protein L30, no bacterial homolog [Source:SGD;Acc:S000002998])

HSP 1 Score: 107.071 bits (266), Expect = 1.898e-31
Identity = 48/93 (51.61%), Postives = 71/93 (76.34%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDIL 403
            +I  +LAL +K+GKY LG   T+K++R GK++LII+A N   L KS++EYY+MLS+  +++F G N++LGTA GKLF+V  ++I + GDSDIL
Sbjct:    9 SINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEAGDSDIL 101
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Nematostella
Match: EDO46272 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RQD8])

HSP 1 Score: 131.339 bits (329), Expect = 1.940e-40
Identity = 57/94 (60.64%), Postives = 78/94 (82.98%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            +I SRLAL +K+GK+ LGL  TLKT+R GKA+L+I+A N   L KS++EYY+ML++ G+HH+ GNN +LGTACGK F+VS ++ITDPGDSDI++
Sbjct:   13 SINSRLALVMKSGKFTLGLKSTLKTLRQGKAKLVIIANNTPQLRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVSVLSITDPGDSDIIR 106
[Close]
BLAST of 60S ribosomal protein L30 vs. Ensembl Medaka
Match: rpl30 (ribosomal protein L30 [Source:NCBI gene;Acc:101170444])

HSP 1 Score: 120.939 bits (302), Expect = 6.835e-36
Identity = 53/94 (56.38%), Postives = 73/94 (77.66%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILK 406
            +I SRL L +K+GKY LG  Q+ K IR GKA+L+I+A N   L KS++EYY+ML++ G+HH+ GNN +LGTACGK ++V  +AI DPGDSDI++
Sbjct:   13 SINSRLQLVMKSGKYVLGYKQSQKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIR 106
[Close]
BLAST of 60S ribosomal protein L30 vs. Planmine SMEST
Match: SMESG000022893.1 (SMESG000022893.1)

HSP 1 Score: 205.297 bits (521), Expect = 2.967e-69
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 2 
Query:  125 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILKIETNA 421
            NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILKIETNA
Sbjct:   19 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFMAITDPGDSDILKIETNA 117
The following BLAST results are available for this feature:
BLAST of 60S ribosomal protein L30 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RPL304.455e-3758.51ribosomal protein L30 [Source:HGNC Symbol;Acc:HGNC... [more]
RPL304.640e-3758.51ribosomal protein L30 [Source:HGNC Symbol;Acc:HGNC... [more]
RPL304.640e-3758.51ribosomal protein L30 [Source:HGNC Symbol;Acc:HGNC... [more]
RPL302.377e-2147.87ribosomal protein L30 [Source:HGNC Symbol;Acc:HGNC... [more]
RPL302.212e-1459.52ribosomal protein L30 [Source:HGNC Symbol;Acc:HGNC... [more]
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BLAST of 60S ribosomal protein L30 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3
Match NameE-valueIdentityDescription
rpl-308.334e-3958.06Ribosomal Protein, Large subunit [Source:UniProtK... [more]
rpl-304.205e-3556.98Ribosomal Protein, Large subunit [Source:UniProtK... [more]
rpl-304.205e-3556.98Ribosomal Protein, Large subunit [Source:UniProtK... [more]
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BLAST of 60S ribosomal protein L30 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
RpL303.840e-3756.84gene:FBgn0086710 transcript:FBtr0302491[more]
RpL303.840e-3756.84gene:FBgn0086710 transcript:FBtr0081181[more]
RpL303.840e-3756.84gene:FBgn0086710 transcript:FBtr0340319[more]
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BLAST of 60S ribosomal protein L30 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
rpl301.051e-3556.38ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-03... [more]
rpl301.051e-3556.38ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-03... [more]
rpl301.778e-3256.47ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-03... [more]
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BLAST of 60S ribosomal protein L30 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3
Match NameE-valueIdentityDescription
rpl303.228e-3758.51ribosomal protein L30 [Source:NCBI gene;Acc:448690... [more]
rpl303.411e-3758.51ribosomal protein L30 [Source:NCBI gene;Acc:448690... [more]
rpl302.101e-3457.29ribosomal protein L30 [Source:NCBI gene;Acc:448690... [more]
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BLAST of 60S ribosomal protein L30 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Rpl303.186e-3758.51ribosomal protein L30 [Source:MGI Symbol;Acc:MGI:9... [more]
Rpl303.186e-3758.51ribosomal protein L30 [Source:MGI Symbol;Acc:MGI:9... [more]
Rpl306.425e-3458.82ribosomal protein L30 [Source:MGI Symbol;Acc:MGI:9... [more]
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BLAST of 60S ribosomal protein L30 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P58375|RL30_SPOFR1.593e-4264.5260S ribosomal protein L30 OS=Spodoptera frugiperda... [more]
sp|Q9UTP0|RL30B_SCHPO1.779e-3864.5260S ribosomal protein L30-2 OS=Schizosaccharomyces... [more]
sp|P58374|RL30_BRABE3.269e-3860.6460S ribosomal protein L30 OS=Branchiostoma belcher... [more]
sp|P52808|RL30A_SCHPO5.731e-3762.3760S ribosomal protein L30-1 OS=Schizosaccharomyces... [more]
sp|P67884|RL30_OPHHA1.472e-3658.5160S ribosomal protein L30 OS=Ophiophagus hannah OX... [more]
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BLAST of 60S ribosomal protein L30 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
F1LHC04.365e-4163.8360S ribosomal protein L30 OS=Ascaris suum OX=6253 ... [more]
A0A0M3HY334.365e-4163.83Ribosomal_L7Ae domain-containing protein OS=Ascari... [more]
F1LGY85.460e-4163.8360S ribosomal protein L30 OS=Ascaris suum OX=6253 ... [more]
A6YMS81.135e-4063.83Large subunit ribosomal protein 30 (Fragment) OS=P... [more]
A0A0M3JT282.154e-4062.7760S ribosomal protein L30 (inferred by orthology t... [more]
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BLAST of 60S ribosomal protein L30 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpl304.529e-3657.45ribosomal protein L30 [Source:NCBI gene;Acc:103028... [more]
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BLAST of 60S ribosomal protein L30 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSPMAT00000007390.11.126e-3556.18pep scaffold:Pmarinus_7.0:GL487715:1154:2655:-1 ge... [more]
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BLAST of 60S ribosomal protein L30 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
RPL301.898e-3151.61Ribosomal 60S subunit protein L30; involved in pre... [more]
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BLAST of 60S ribosomal protein L30 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO462721.940e-4060.64Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of 60S ribosomal protein L30 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpl306.835e-3656.38ribosomal protein L30 [Source:NCBI gene;Acc:101170... [more]
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BLAST of 60S ribosomal protein L30 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000022893.12.967e-69100.00SMESG000022893.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30018504 ID=SMED30018504|Name=60S ribosomal protein L30|organism=Schmidtea mediterranea sexual|type=transcript|length=459bp
AAAGCACATTTTTATAAATAATTAAATTTTGTTTAAATTTTATATCAACA
CTGATTAAAAATAATTCAAAATGGTATCAAAAGTTGACAAAAGAAAAGAA
CCGAAGAAAAAGGTTAAGGAAGAAAATATTGGTAGCCGATTGGCTCTTGC
AGTTAAAACTGGAAAATATTGCTTAGGTCTTAACCAAACTCTTAAAACTA
TTAGATCAGGAAAGGCTGAACTTATCATTGTAGCAAAGAATGCTAATCCA
CTTGTTAAAAGTCAAGTTGAATATTATTCTATGTTATCCAGAAAAGGTAT
CCACCATTTTGACGGAAACAATAGCGATCTAGGAACAGCATGTGGTAAAT
TGTTCAAAGTATCATTCATGGCAATTACTGATCCAGGAGATTCAGATATT
TTAAAAATTGAAACAAATGCTTAAGAATTAATAAATTTTTCAATTGGATT
AAAAAAAAA
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protein sequence of SMED30018504-orf-1

>SMED30018504-orf-1 ID=SMED30018504-orf-1|Name=SMED30018504-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=118bp
MVSKVDKRKEPKKKVKEENIGSRLALAVKTGKYCLGLNQTLKTIRSGKAE
LIIVAKNANPLVKSQVEYYSMLSRKGIHHFDGNNSDLGTACGKLFKVSFM
AITDPGDSDILKIETNA*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: cellular component
TermDefinition
GO:0022625cytosolic large ribosomal subunit
GO:0005622intracellular
GO:0005840ribosome
GO:0030529intracellular ribonucleoprotein complex
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000039gamma neoblast
PLANA:0000120progenitor cell
PLANA:0000429neoblast
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR039109L30/L30e/YlxQ
IPR000231Ribosomal_L30e
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR029064L30e-like
IPR022991Ribosomal_L30e_CS
Vocabulary: biological process
TermDefinition
GO:0006412translation
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 20..111
e-value: 4.0E-22
score: 77.8
IPR02906450S ribosomal protein L30e-likeGENE3DG3DSA:3.30.1330.30coord: 8..115
e-value: 7.3E-43
score: 146.5
IPR02906450S ribosomal protein L30e-likeSUPERFAMILYSSF55315L30e-likecoord: 19..112
IPR039109Ribosomal protein L30/YlxQPANTHERPTHR11449RIBOSOMAL PROTEIN L30coord: 12..113
IPR000231Ribosomal protein L30ePANTHERPTHR11449:SF160S RIBOSOMAL PROTEIN L30coord: 12..113
IPR022991Ribosomal protein L30e, conserved sitePROSITEPS00993RIBOSOMAL_L30E_2coord: 86..106