Lipopolysaccharide-induced TNF-alpha factor
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30018451 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 6
Homology
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Zebrafish
Match: si:ch211-202h22.8 (si:ch211-202h22.8 [Source:ZFIN;Acc:ZDB-GENE-090313-78]) HSP 1 Score: 57.7658 bits (138), Expect = 2.486e-10 Identity = 41/126 (32.54%), Postives = 57/126 (45.24%), Query Frame = 2 Query: 194 PPPIGFAVPQSQNQNYPMAYNP-------PANHTTVIIQSAAAN-----------------GSTECQRCHSHVISDVEYRCGCFTVXXXXXXXXXAPLGCCLIPFCVNSCKNTHYRCPNCGHTISV 499 PP G V Q+Q YP+ Y P P + +QS+ A G T+C C +I++ Y G T IC + I CCLIPFCV++CK+ +RCPNC H + + Sbjct: 8 PPYSGPEVNQTQFTPYPVQYQPQPVYPPHPKDGFAPAVQSSPAPVVVTQVVMMPPSLSDVPGQTKCPHCQQQIITETRYVNGLLTWLICGGLGILLIWPCCLIPFCVSACKDVEHRCPNCKHVVFL 133
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Zebrafish
Match: si:ch211-202h22.8 (si:ch211-202h22.8 [Source:ZFIN;Acc:ZDB-GENE-090313-78]) HSP 1 Score: 57.7658 bits (138), Expect = 2.486e-10 Identity = 41/126 (32.54%), Postives = 57/126 (45.24%), Query Frame = 2 Query: 194 PPPIGFAVPQSQNQNYPMAYNP-------PANHTTVIIQSAAAN-----------------GSTECQRCHSHVISDVEYRCGCFTVXXXXXXXXXAPLGCCLIPFCVNSCKNTHYRCPNCGHTISV 499 PP G V Q+Q YP+ Y P P + +QS+ A G T+C C +I++ Y G T IC + I CCLIPFCV++CK+ +RCPNC H + + Sbjct: 8 PPYSGPEVNQTQFTPYPVQYQPQPVYPPHPKDGFAPAVQSSPAPVVVTQVVMMPPSLSDVPGQTKCPHCQQQIITETRYVNGLLTWLICGGLGILLIWPCCLIPFCVSACKDVEHRCPNCKHVVFL 133
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Zebrafish
Match: si:ch211-202h22.7 (si:ch211-202h22.7 [Source:ZFIN;Acc:ZDB-GENE-090313-77]) HSP 1 Score: 55.4546 bits (132), Expect = 2.043e-9 Identity = 34/91 (37.36%), Postives = 44/91 (48.35%), Query Frame = 2 Query: 233 QNYPMAYNPPANHTTVIIQSAAAN--GSTECQRCHSHVISDVEYRCGCFTVXXXXXXXXXAPLGCCLIPFCVNSCKNTHYRCPNCGHTISV 499 Q A PPA T V++ S G C C V+++ Y G IC + IF CCLIPFCV+SCK+ +RCP C + V Sbjct: 52 QTVQTAAPPPAQTTVVLMPSRLGECPGQMRCPHCQQQVVTETTYVNGLLVWGICIGLGIFGIWPCCLIPFCVDSCKDVQHRCPGCKSLVYV 142
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Zebrafish
Match: si:ch211-202h22.7 (si:ch211-202h22.7 [Source:ZFIN;Acc:ZDB-GENE-090313-77]) HSP 1 Score: 50.8322 bits (120), Expect = 5.330e-8 Identity = 34/99 (34.34%), Postives = 46/99 (46.46%), Query Frame = 2 Query: 233 QNYPMAYNPPANH-------TTVIIQSAAAN---GSTECQRCHSHVISDVEYRCGCFTVXXXXXXXXXAPLGCCLIPFCVNSCKNTHYRCPNCGHTISV 499 Q P+ Y P A TTV++ + G C C V+++ Y G IC + IF CCLIPFCV+SCK+ +RCP C + V Sbjct: 23 QQPPVTYQPQAGQLNKALKLTTVVLMPSRLGECPGQMRCPHCQQQVVTETTYVNGLLVWGICIGLGIFGIWPCCLIPFCVDSCKDVQHRCPGCKSLVYV 121
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Zebrafish
Match: si:ch211-157c3.4 (si:ch211-157c3.4 [Source:ZFIN;Acc:ZDB-GENE-030131-8454]) HSP 1 Score: 45.4394 bits (106), Expect = 7.655e-6 Identity = 42/152 (27.63%), Postives = 62/152 (40.79%), Query Frame = 2 Query: 74 SGNAPPPPYTAVVRQPVGTNDK--------TASAPVYPAQHYSSIQQEPPPIGFAVPQSQNQNYPMAYNPPANHTTVIIQSAAANGSTECQRCHSHVISDVEYRCGCFT-VXXXXXXXXXAPLGCCLIPFCVNSCKNTHYRCPNCGHTISVK 502 G PPPYT V G+N K T + Y A H P QSQ+ A N ++ + + A + C C V+++V Y+ G + + I F LGCCLIPF + K+ ++ CP C + V+ Sbjct: 4 DGTGTPPPYTIPVEDGKGSNVKVYHVHTPFTPQSSTYGASHAQVASSRPV-------QSQSTE---ARNKYVSYESYELGRKPAMAT--CTSCQQQVLTNVTYKVGVYAWLMCILIFFCGFVLGCCLIPFFMKFFKDAYHSCPRCNKILHVE 143
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Xenopus
Match: ENSXETT00000031517.1 (LITAF domain containing [Source:NCBI gene;Acc:100498168]) HSP 1 Score: 55.0694 bits (131), Expect = 2.963e-9 Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 2 Query: 308 STECQRCHSHVISDVEYRCGCFT-VXXXXXXXXXAPLGCCLIPFCVNSCKNTHYRCPNCGHTI 493 ST C C ++I+++ Y G T + + LGCCLIPFCV+SCK+ + CPNC H + Sbjct: 73 STTCPSCRQNIITNIHYNIGLLTWLLFGILFIFGCWLGCCLIPFCVDSCKDVDHYCPNCNHHL 135
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Xenopus
Match: ENSXETT00000016678.1 (lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [Source:NCBI gene;Acc:100498592]) HSP 1 Score: 46.9802 bits (110), Expect = 4.504e-6 Identity = 28/62 (45.16%), Postives = 34/62 (54.84%), Query Frame = 2 Query: 311 TECQRCHSHVISDVEYRCGCFTVXXXXXXXXXA-PLGCCLIPFCVNSCKNTHYRCPNCGHTI 493 T C C S V + EY G TV + II +F GCCLIPF V CK+ ++ CPNC I Sbjct: 125 TTCSFCQSQVRTRTEYTIGSLTVILFLIIILFGCWFGCCLIPFFVQHCKDVNHFCPNCNRLI 186
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Xenopus
Match: ENSXETT00000016660.1 (lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [Source:NCBI gene;Acc:100498592]) HSP 1 Score: 46.595 bits (109), Expect = 4.713e-6 Identity = 28/62 (45.16%), Postives = 34/62 (54.84%), Query Frame = 2 Query: 311 TECQRCHSHVISDVEYRCGCFTVXXXXXXXXXA-PLGCCLIPFCVNSCKNTHYRCPNCGHTI 493 T C C S V + EY G TV + II +F GCCLIPF V CK+ ++ CPNC I Sbjct: 102 TTCSFCQSQVRTRTEYTIGSLTVILFLIIILFGCWFGCCLIPFFVQHCKDVNHFCPNCNRLI 163
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. TrEMBL
Match: A0A210QGT7 (Lipopolysaccharide-induced tumor necrosis factor-alpha factor-like OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT17959 PE=4 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 4.179e-8 Identity = 45/128 (35.16%), Postives = 63/128 (49.22%), Query Frame = 2 Query: 152 PVYPAQHYSSIQQEPPPIGFAVPQSQNQNYPMA--YNPPAN-----HTTVIIQSAAANGS----TECQRCHSHVISDVEYRCGCFTVXXXXXXXXXA-PLGCCLIPFCVNSCKNTHYRCPNCGHTISV 499 P Y A S QQ P P G+ PQ +YP A YN TT+++Q G +CQ CH+++ + +EY G T ++ IF LGCCLIPFC+N + ++CPNC + V Sbjct: 29 PKYEAGPQSGYQQAPQPQGYP-PQG---SYPQAPGYNAQGQPVYMAQTTLVVQPQIGFGPNPTPMQCQHCHANISTALEYEAGALTWLSAGVLCIFGCWLGCCLIPFCINDLSDVQHKCPNCNKLVGV 152
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. TrEMBL
Match: G3FF69 (LPS-induced TNF-alpha factor OS=Mizuhopecten yessoensis OX=6573 GN=LITAF PE=2 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 4.533e-8 Identity = 45/128 (35.16%), Postives = 63/128 (49.22%), Query Frame = 2 Query: 152 PVYPAQHYSSIQQEPPPIGFAVPQSQNQNYPMA--YNPPAN-----HTTVIIQSAAANGS----TECQRCHSHVISDVEYRCGCFTVXXXXXXXXXA-PLGCCLIPFCVNSCKNTHYRCPNCGHTISV 499 P Y A S QQ P P G+ PQ +YP A YN TT+++Q G +CQ CH+++ + +EY G T ++ IF LGCCLIPFC+N + ++CPNC + V Sbjct: 29 PKYEAGPQSGYQQAPQPQGYP-PQG---SYPQAPGYNAQGQPVYMAQTTLVVQPQIGFGPNPRPMQCQHCHANISTALEYEAGALTWLSAGVLCIFGCWLGCCLIPFCINDLSDVQHKCPNCNKLVGV 152
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. TrEMBL
Match: A0A094ZX34 (Lipopolysaccharide-induced tumor necrosis factor-alpha factor-like protein (Fragment) OS=Schistosoma haematobium OX=6185 GN=MS3_07296 PE=4 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 1.761e-7 Identity = 37/107 (34.58%), Postives = 53/107 (49.53%), Query Frame = 2 Query: 179 SIQQEPPPIGFAVPQSQNQNYPMAYNPPANHTTVIIQSAAANGSTECQRCHSHVISDVEYRCGCFTVXXXXXXXXXAPL-GCCLIPFCVNSCKNTHYRCPNCGHTIS 496 +QQEP G QN+ P+ + P II + +C CH +++ ++YR G T C + I GCCLIPFCV +CK+ ++CP CGH I Sbjct: 2 GLQQEPMLSG---KTDQNKETPVVTSQPVT----IIPLQDHPITLKCPNCHQEIVTKIKYRNGMLTYAACTGLCIVGCFCGCCLIPFCVKACKDVDHKCPECGHHIG 101
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. TrEMBL
Match: F1BZ88 (LPS-induced TNF-a factor OS=Ruditapes philippinarum OX=129788 PE=2 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 1.773e-7 Identity = 37/108 (34.26%), Postives = 54/108 (50.00%), Query Frame = 2 Query: 188 QEPPPIGFAVPQSQNQNYPMAYNPPANHTTVIIQSAA---------ANGSTECQRCHSHVISDVEYRCGCFT-VXXXXXXXXXAPLGCCLIPFCVNSCKNTHYRCPNC 481 + PPP A PQ Q Y Y P N +TV++ A + +CQ C + V++ Y G T V I + +GCCLIPFC+++CK+ ++CPNC Sbjct: 13 KGPPPPNAAYPQQQPAQYNTPYGQPQNTSTVVVTQPAYTVVQHFRESPVRIKCQFCQADVVTSTFYETGTLTWVACFVIAIVGCWIGCCLIPFCMDACKDVVHQCPNC 120
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. TrEMBL
Match: A0A3Q2D6A7 (LITAF domain-containing protein OS=Cyprinodon variegatus OX=28743 PE=4 SV=1) HSP 1 Score: 60.077 bits (144), Expect = 2.176e-7 Identity = 38/114 (33.33%), Postives = 56/114 (49.12%), Query Frame = 2 Query: 158 YPAQHYSSIQQEPPPIGFAVPQSQNQNYPMAYNPPANHTTVIIQSAAANGSTECQRCHSHVISDVEYRCGCFTVXXXXXXXXXAPLGCCLIPFCVNSCKNTHYRCPNCGHTISV 499 YP Q+ + QQ P + + Q+Q P T V + A GS C C + V++ +EY+ G T I +FI CCLIPFCVN+CK+ + CP C + + + Sbjct: 104 YPQQYLKNDQQ--PVVQYMAQQNQ------VAQPVKQVTVVQPRPTDAPGSMLCPHCQTTVVTSIEYKLGLLTWLIVGSLFIIGVWPCCLIPFCVNACKDVQHSCPQCNNVLHI 209
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Cavefish
Match: si:ch211-157c3.4 (lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [Source:NCBI gene;Acc:103024010]) HSP 1 Score: 45.8246 bits (107), Expect = 3.854e-6 Identity = 23/68 (33.82%), Postives = 35/68 (51.47%), Query Frame = 2 Query: 305 GSTECQRCHSHVISDVEYRCGCFT-VXXXXXXXXXAPLGCCLIPFCVNSCKNTHYRCPNCGHTISVKS 505 G+T C C V+++V Y+ G F + I +GCCLIPF V K+ ++ CP C + V+ Sbjct: 72 GTTTCTSCREQVLTNVTYKVGAFAWLMCILFILCGLVIGCCLIPFFVKYFKDAYHTCPRCNRILHVEK 139
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Nematostella
Match: EDO37753 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SES1]) HSP 1 Score: 48.521 bits (114), Expect = 3.756e-8 Identity = 24/62 (38.71%), Postives = 35/62 (56.45%), Query Frame = 2 Query: 317 CQRCHSHVISDVEYRCGCFT-VXXXXXXXXXAPLGCCLIPFCVNSCKNTHYRCPNCGHTISV 499 C C +H+++ YR G T + I + LGCCLIPFC++ CK+ + CPNC + V Sbjct: 3 CSFCQTHIVTATTYRYGALTWLLSGGICLLGGWLGCCLIPFCLDGCKDVIHTCPNCQAQLGV 64
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Nematostella
Match: EDO33373 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SSF9]) HSP 1 Score: 45.0542 bits (105), Expect = 1.240e-6 Identity = 24/65 (36.92%), Postives = 35/65 (53.85%), Query Frame = 2 Query: 308 STECQRCHSHVISDVEYRCGCFT-VXXXXXXXXXAPLGCCLIPFCVNSCKNTHYRCPNCGHTISV 499 S C CH+ +++ +Y G T + + I LGCC IPFCV+S K+ + CPNC + V Sbjct: 35 SMNCPTCHATIVTATDYVTGTLTWLACFGLCIIGCDLGCCFIPFCVDSMKDVVHTCPNCRSQVGV 99
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Medaka
Match: si:ch211-202h22.9 (si:ch211-202h22.9 [Source:ZFIN;Acc:ZDB-GENE-030131-1143]) HSP 1 Score: 50.0618 bits (118), Expect = 2.678e-7 Identity = 25/65 (38.46%), Postives = 37/65 (56.92%), Query Frame = 2 Query: 305 GSTECQRCHSHVISDVEYRCGCFTVXXXXXXXXXAPLGCCLIPFCVNSCKNTHYRCPNCGHTISV 499 G C C + V++ E++ G T I ++ I CCLIPFCVNSCK+ + CP+C + + V Sbjct: 120 GQMLCPHCQNTVVTKTEHKVGMQTWLIFGVLGIIGCWPCCLIPFCVNSCKDVQHSCPSCNNVLHV 184
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Medaka
Match: ENSORLT00000037533.1 (pep primary_assembly:ASM223467v1:1:23682164:23683902:-1 gene:ENSORLG00000026577.1 transcript:ENSORLT00000037533.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 44.669 bits (104), Expect = 6.322e-6 Identity = 24/62 (38.71%), Postives = 35/62 (56.45%), Query Frame = 2 Query: 317 CQRCHSHVISDVEYRCGCFT-VXXXXXXXXXAPLGCCLIPFCVNSCKNTHYRCPNCGHTISV 499 C +CH V+S V++ G T + + F LGCCLIPFCV+ K+ + CP+C + V Sbjct: 41 CPKCHRTVLSKVDHSAGLLTYLLCGGLFFCGFVLGCCLIPFCVDRVKDAKHSCPSCKTILGV 102
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Planmine SMEST
Match: SMESG000020870.1 (SMESG000020870.1) HSP 1 Score: 277.715 bits (709), Expect = 3.119e-96 Identity = 147/150 (98.00%), Postives = 149/150 (99.33%), Query Frame = 2 Query: 62 MKRDSGNAPPPPYTAVVRQPVGTNDKTASAPVYPAQHYSSIQQEPPPIGFAVPQSQNQNYPMAYNPPANHTTVIIQSAAANGSTECQRCHSHVISDVEYRCGCFTVXXXXXXXXXAPLGCCLIPFCVNSCKNTHYRCPNCGHTISVKSPC 511 MKRDSGNAPPPPYTAVVRQPVGT+DKT SAPVYPAQ+YSSIQQEPPPIGFAVPQSQNQNYPMAYNPPANHTTVIIQSAAANGSTECQRCHSHVISDVEYRCGCFTVFICFIIFIFAPLGCCLIPFCVNSCKNTHYRCPNCGHTISVKSPC Sbjct: 1 MKRDSGNAPPPPYTAVVRQPVGTDDKTPSAPVYPAQNYSSIQQEPPPIGFAVPQSQNQNYPMAYNPPANHTTVIIQSAAANGSTECQRCHSHVISDVEYRCGCFTVFICFIIFIFAPLGCCLIPFCVNSCKNTHYRCPNCGHTISVKSPC 150
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Planmine SMEST
Match: SMESG000020865.1 (SMESG000020865.1) HSP 1 Score: 60.8474 bits (146), Expect = 1.161e-11 Identity = 34/91 (37.36%), Postives = 50/91 (54.95%), Query Frame = 2 Query: 239 YPMAYNPPANHTTVIIQSAAANGSTECQRCHSHVISDVEYRCGCFTVXXXXXXXXXAPLGCCLIPFCVNSCKNTHYRCPNCGHTISVKSPC 511 +P + PA + + + C +C + V + Y+ G FT +CFIIF+FAP+GCCLIPFC+N K+ Y+CP C H + C Sbjct: 49 HPHQHQNPAPSVVHVTKINYGSSKVRCDKCENEVFPAISYKSGGFTWLMCFIIFLFAPIGCCLIPFCINGFKDEKYKCPICDHKLYELRRC 139
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Planmine SMEST
Match: SMESG000033033.1 (SMESG000033033.1) HSP 1 Score: 55.4546 bits (132), Expect = 4.291e-10 Identity = 31/77 (40.26%), Postives = 42/77 (54.55%), Query Frame = 2 Query: 281 IIQSAAANGSTECQRCHSHVISDVEYRCGCFTVXXXXXXXXXAPLGCCLIPFCVNSCKNTHYRCPNCGHTISVKSPC 511 II S C +C +++ V+++ GC T CF I IF PLGCCLIPFC+ CK+ H+ CP C + C Sbjct: 17 IIGFGTEEKSIVCPKCLEEILTVVKFKVGCQTWLFCFGIGIFCPLGCCLIPFCLRECKDAHHFCPKCDRYLGRYKRC 93
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Planmine SMEST
Match: SMESG000020853.1 (SMESG000020853.1) HSP 1 Score: 45.4394 bits (106), Expect = 2.857e-6 Identity = 22/64 (34.38%), Postives = 36/64 (56.25%), Query Frame = 2 Query: 308 STECQRCHSHVISDVEYRCGCFTVXXXXXXXXXAP-LGCCLIPFCVNSCKNTHYRCPNCGHTIS 496 +T C C + +++ + Y G T +C + + LGCCLIPFCV+ CK+ + CP+C + Sbjct: 60 NTVCPHCQAQIVTGIRYDNGLLTWLLCGGLALLGCWLGCCLIPFCVDDCKDVIHVCPSCNMKVG 123 The following BLAST results are available for this feature:
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 3
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 2
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of Lipopolysaccharide-induced TNF-alpha factor vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 4
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30018451 ID=SMED30018451|Name=Lipopolysaccharide-induced TNF-alpha factor|organism=Schmidtea mediterranea sexual|type=transcript|length=679bpback to top protein sequence of SMED30018451-orf-1 >SMED30018451-orf-1 ID=SMED30018451-orf-1|Name=SMED30018451-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=151bp MKRDSGNAPPPPYTAVVRQPVGTNDKTASAPVYPAQHYSSIQQEPPPIGFback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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