Tubulin alpha chain, nucleomorph

Overview


Name	Tubulin alpha chain, nucleomorph
Smed ID	SMED30018426
Length (bp)	435

Neoblast Clusters

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Tubulin alpha chain, nucleomorph (SMED30018426) t-SNE clustered cells

Violin plots show distribution of expression levels for Tubulin alpha chain, nucleomorph (SMED30018426) in cells (dots) of each of the 12 neoblast clusters.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30018426

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 3

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
testis	SMED30018426	SMESG000057127.1	Contig143_SE3	GPL10652	PMID:20844018 Wang et al., 2010
early male germ cell	SMED30018426	SMESG000057127.1	Contig143_SE3	GPL10652	PMID:20844018 Wang et al., 2010
testis primordium	SMED30018426	SMESG000057127.1	Contig143_SE3	GPL10652	PMID:20844018 Wang et al., 2010

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Human
Match: TUBA8 (tubulin alpha 8 [Source:HGNC Symbol;Acc:HGNC:12410])

HSP 1 Score: 50.447 bits (119), Expect = 1.712e-7
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++ T+S
Sbjct:  433 VGEGMEEGEFSEAREDLAALEKDYEEVGTDS 463

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Human
Match: TUBA8 (tubulin alpha 8 [Source:HGNC Symbol;Acc:HGNC:12410])

HSP 1 Score: 50.0618 bits (118), Expect = 2.077e-7
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++ T+S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGTDS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Human
Match: TUBA1C (tubulin alpha 1c [Source:HGNC Symbol;Acc:HGNC:20768])

HSP 1 Score: 49.6766 bits (117), Expect = 3.767e-7
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSED 101
            VGEGMEE EF EAR D+ ALE+DYE++  +S D
Sbjct:  479 VGEGMEEGEFSEAREDMAALEKDYEEVGADSAD 511

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Human
Match: TUBA1C (tubulin alpha 1c [Source:HGNC Symbol;Acc:HGNC:20768])

HSP 1 Score: 49.2914 bits (116), Expect = 4.564e-7
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSED 101
            VGEGMEE EF EAR D+ ALE+DYE++  +S D
Sbjct:  409 VGEGMEEGEFSEAREDMAALEKDYEEVGADSAD 441

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Human
Match: TUBA3C (tubulin alpha 3c [Source:HGNC Symbol;Acc:HGNC:12408])

HSP 1 Score: 48.9062 bits (115), Expect = 5.324e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGVDS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Celegans
Match: tba-1 (Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:O18688])

HSP 1 Score: 49.2914 bits (116), Expect = 1.481e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  412 VGEGMEEGEFTEAREDLAALEKDYEEVGADS 442

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Celegans
Match: tba-1 (Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:O18688])

HSP 1 Score: 49.2914 bits (116), Expect = 1.596e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  407 VGEGMEEGEFTEAREDLAALEKDYEEVGADS 437

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Celegans
Match: Y19D2B.1 (pep chromosome:WBcel235:II:10922672:10922974:-1 gene:WBGene00012489.1 transcript:Y19D2B.1.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y19D2B.1)

HSP 1 Score: 46.595 bits (109), Expect = 1.743e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:   44 VGEGMEEGEFTEAREDLAALEKDYEEVGADS 74

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Celegans
Match: tba-2 (Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:P34690])

HSP 1 Score: 48.9062 bits (115), Expect = 2.087e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  407 VGEGMEEGEFTEAREDLAALEKDYEEVGADS 437

[Close]

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  407 VGEGMEEGEFTEAREDLAALEKDYEEVGADS 437

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Fly
Match: alphaTub85E (gene:FBgn0003886 transcript:FBtr0082087)

HSP 1 Score: 48.521 bits (114), Expect = 3.500e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFAEAREDLAALEKDYEEVGIDS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Fly
Match: alphaTub84B (gene:FBgn0003884 transcript:FBtr0081639)

HSP 1 Score: 48.521 bits (114), Expect = 3.638e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGMDS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Fly
Match: alphaTub84D (gene:FBgn0003885 transcript:FBtr0081538)

HSP 1 Score: 48.521 bits (114), Expect = 3.854e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGMDS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Zebrafish
Match: tuba4l (tubulin, alpha 4 like [Source:ZFIN;Acc:ZDB-GENE-030131-5588])

HSP 1 Score: 50.447 bits (119), Expect = 1.013e-7
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSED 101
            VGEGMEE EF EAR D+ ALE+DYE++A +S D
Sbjct:  415 VGEGMEEGEFSEAREDMAALEKDYEEVAADSTD 447

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Zebrafish
Match: tuba4l (tubulin, alpha 4 like [Source:ZFIN;Acc:ZDB-GENE-030131-5588])

HSP 1 Score: 50.447 bits (119), Expect = 1.029e-7
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSED 101
            VGEGMEE EF EAR D+ ALE+DYE++A +S D
Sbjct:  408 VGEGMEEGEFSEAREDMAALEKDYEEVAADSTD 440

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Zebrafish
Match: si:ch73-199e17.1 (si:ch73-199e17.1 [Source:ZFIN;Acc:ZDB-GENE-100921-8])

HSP 1 Score: 50.0618 bits (118), Expect = 1.427e-7
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++ T+S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGTDS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Zebrafish
Match: si:ch73-199e17.1 (si:ch73-199e17.1 [Source:ZFIN;Acc:ZDB-GENE-100921-8])

HSP 1 Score: 50.0618 bits (118), Expect = 1.445e-7
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++ T+S
Sbjct:  437 VGEGMEEGEFSEAREDLAALEKDYEEVGTDS 467

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Zebrafish
Match: tuba8l4 (tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860])

HSP 1 Score: 50.0618 bits (118), Expect = 1.713e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  409 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Xenopus
Match: pex1 (peroxisomal biogenesis factor 1 [Source:Xenbase;Acc:XB-GENE-985415])

HSP 1 Score: 50.0618 bits (118), Expect = 2.316e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  419 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 449

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Xenopus
Match: pex1 (peroxisomal biogenesis factor 1 [Source:Xenbase;Acc:XB-GENE-985415])

HSP 1 Score: 50.0618 bits (118), Expect = 2.442e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  409 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Xenopus
Match: pex1 (peroxisomal biogenesis factor 1 [Source:Xenbase;Acc:XB-GENE-985415])

HSP 1 Score: 50.0618 bits (118), Expect = 2.466e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  409 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Xenopus
Match: ENSXETT00000053522.1 (tubulin alpha-1A chain-like [Source:NCBI gene;Acc:100497157])

HSP 1 Score: 49.6766 bits (117), Expect = 2.661e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  408 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 438

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Xenopus
Match: ccdc171 (coiled-coil domain containing 171 [Source:Xenbase;Acc:XB-GENE-1003303])

HSP 1 Score: 49.6766 bits (117), Expect = 2.661e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  408 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 438

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Mouse
Match: Tuba8 (tubulin, alpha 8 [Source:MGI Symbol;Acc:MGI:1858225])

HSP 1 Score: 50.447 bits (119), Expect = 1.234e-7
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++ T+S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGTDS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Mouse
Match: Tuba3a (tubulin, alpha 3A [Source:MGI Symbol;Acc:MGI:1095406])

HSP 1 Score: 48.9062 bits (115), Expect = 3.655e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGVDS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Mouse
Match: Tuba3b (tubulin, alpha 3B [Source:MGI Symbol;Acc:MGI:1095408])

HSP 1 Score: 48.9062 bits (115), Expect = 3.655e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGVDS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Mouse
Match: Tuba1a (tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869])

HSP 1 Score: 48.1358 bits (113), Expect = 7.805e-7
Identity = 20/31 (64.52%), Postives = 25/31 (80.65%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDMAALEKDYEEVGVDS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Mouse
Match: Tuba1b (tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804])

HSP 1 Score: 48.1358 bits (113), Expect = 8.267e-7
Identity = 20/31 (64.52%), Postives = 25/31 (80.65%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDMAALEKDYEEVGVDS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. UniProt/SwissProt
Match: sp|Q94572|TBA3_HOMAM (Tubulin alpha-3 chain OS=Homarus americanus OX=6706 PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.835e-7
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSED 101
            VGEGMEE EF EAR DL ALE+DYE++  +S D
Sbjct:  409 VGEGMEEGEFTEAREDLAALEKDYEEVGVDSAD 441

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. UniProt/SwissProt
Match: sp|Q5I2J3|TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) OX=229533 GN=TUB1 PE=3 SV=2)

HSP 1 Score: 50.8322 bits (120), Expect = 6.349e-7
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++AT+S
Sbjct:  409 VGEGMEEGEFSEAREDLAALERDYEEVATDS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. UniProt/SwissProt
Match: sp|Q25008|TBA1_HOMAM (Tubulin alpha-1 chain OS=Homarus americanus OX=6706 PE=2 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 6.996e-7
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSED 101
            VGEGMEE EF EAR DL ALE+DYE++  +S D
Sbjct:  409 VGEGMEEGEFTEAREDLAALEKDYEEVGMDSAD 441

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. UniProt/SwissProt
Match: sp|Q25563|TBA13_NAEPR (Tubulin alpha-13 chain OS=Naegleria pringsheimi OX=234921 GN=TUBA13 PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 7.784e-7
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSE 98
            VGEGMEE EF EAR DL ALE+DYE++ T S+
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGTESQ 440

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. UniProt/SwissProt
Match: sp|Q2HJB8|TBA8_BOVIN (Tubulin alpha-8 chain OS=Bos taurus OX=9913 GN=TUBA8 PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 7.844e-7
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++ T+S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGTDS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. TrEMBL
Match: K7IW69 (Uncharacterized protein OS=Nasonia vitripennis OX=7425 PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 5.425e-6
Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF+EAR DL ALE+DYE++AT+S
Sbjct:  397 VGEGMEEVEFIEAREDLAALERDYEEVATDS 427

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. TrEMBL
Match: A0A098VQM8 (Tubulin alpha chain OS=Mitosporidium daphniae OX=1485682 GN=DI09_43p40 PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 7.069e-6
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSEDFI 107
            VGEGMEE EF EAR DL ALE+DYE +AT+S DF+
Sbjct:  407 VGEGMEEGEFSEAREDLAALEKDYEQLATDSGDFM 441

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. TrEMBL
Match: A0A1S0TEP5 (Tubulin alpha 2 OS=Loa loa OX=7209 GN=LOAG_15945 PE=4 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 9.410e-6
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSED 101
            +GEGMEE EF EAR DL ALE+DYE++A NS D
Sbjct:   33 IGEGMEEGEFAEAREDLAALEKDYEEVALNSYD 65

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Cavefish
Match: ENSAMXT00000042562.1 (tubulin alpha chain [Source:NCBI gene;Acc:103038315])

HSP 1 Score: 49.6766 bits (117), Expect = 1.583e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  409 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Cavefish
Match: si:ch211-114n24.6 (tubulin alpha-1A chain-like [Source:NCBI gene;Acc:103034569])

HSP 1 Score: 49.6766 bits (117), Expect = 1.584e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  409 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Cavefish
Match: ENSAMXT00000019223.2 (tubulin alpha-1 chain [Source:NCBI gene;Acc:103031418])

HSP 1 Score: 49.6766 bits (117), Expect = 1.598e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++ T++
Sbjct:  410 VGEGMEEGEFSEAREDLAALEKDYEEVGTDT 440

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Cavefish
Match: ENSAMXT00000019222.2 (tubulin alpha-1 chain [Source:NCBI gene;Acc:103031418])

HSP 1 Score: 49.2914 bits (116), Expect = 2.050e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++ T++
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGTDT 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Cavefish
Match: si:ch73-199e17.1 (tubulin alpha chain-like [Source:NCBI gene;Acc:103038622])

HSP 1 Score: 49.2914 bits (116), Expect = 2.235e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  408 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 438

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Yeast
Match: TUB3 (Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules; expressed at lower level than Tub1p; TUB3 has a paralog, TUB1, that arose from the whole genome duplication [Source:SGD;Acc:S000004593])

HSP 1 Score: 44.669 bits (104), Expect = 1.324e-6
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DY ++  +S
Sbjct:  410 VGEGMEEGEFTEAREDLAALERDYIEVGADS 440

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Yeast
Match: TUB1 (Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules; relative distribution to nuclear foci increases upon DNA replication stress; TUB1 has a paralog, TUB3, that arose from the whole genome duplication [Source:SGD;Acc:S000004550])

HSP 1 Score: 44.669 bits (104), Expect = 1.338e-6
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DY ++  +S
Sbjct:  410 VGEGMEEGEFTEAREDLAALERDYIEVGADS 440

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Nematostella
Match: EDO46332 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RQB6])

HSP 1 Score: 50.447 bits (119), Expect = 3.787e-8
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSED 101
            VGEGMEE EF EAR DL ALE+DYE++  +S D
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGADSPD 441

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Nematostella
Match: EDO38064 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SDX8])

HSP 1 Score: 48.9062 bits (115), Expect = 1.064e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  399 VGEGMEEGEFSEAREDLAALEKDYEEVGVDS 429

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Nematostella
Match: EDO40779 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S698])

HSP 1 Score: 48.9062 bits (115), Expect = 1.154e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGADS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Nematostella
Match: EDO38091 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SDY0])

HSP 1 Score: 48.9062 bits (115), Expect = 1.154e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGVDS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Nematostella
Match: EDO38067 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SDY3])

HSP 1 Score: 48.9062 bits (115), Expect = 1.154e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGVDS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Medaka
Match: ENSORLT00000020614.2 (tubulin alpha-1A chain [Source:NCBI gene;Acc:105354455])

HSP 1 Score: 51.2174 bits (121), Expect = 4.835e-8
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS-EDFIYKTEA 122
            VGEGMEE EF EAR D+ ALE+DYE++  +S ED  Y  E+
Sbjct:  411 VGEGMEEGEFSEAREDMAALEKDYEEVGVDSIEDISYNNES 451

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Medaka
Match: ENSORLT00000020468.2 (tubulin alpha-1A chain-like [Source:NCBI gene;Acc:101155224])

HSP 1 Score: 50.447 bits (119), Expect = 1.060e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  451 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 481

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Medaka
Match: ENSORLT00000047085.1 (tubulin alpha-1A chain-like [Source:NCBI gene;Acc:101155224])

HSP 1 Score: 50.0618 bits (118), Expect = 1.177e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  473 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 503

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Medaka
Match: tuba8l3 (tubulin alpha chain [Source:NCBI gene;Acc:101168255])

HSP 1 Score: 50.0618 bits (118), Expect = 1.443e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  409 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Medaka
Match: ENSORLT00000000055.2 (tubulin alpha-1C chain [Source:NCBI gene;Acc:101166777])

HSP 1 Score: 49.6766 bits (117), Expect = 1.747e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  409 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Planmine SMEST
Match: SMESG000057127.1 (SMESG000057127.1)

HSP 1 Score: 236.113 bits (601), Expect = 1.966e-76
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSEDFIYKTEAHLLKKPPTFQQTSIKENTYEEREISKRSSKQKTDFEQGNFNDEKFINGKEESLEKDITVNDNNTNYSMFYKRNYR 347
            VGEGMEEAEFVEARSDLVALEQDYEDIATNSEDFIYKTEAHLLKKPPTFQQTSIKENTYEEREISKRSSKQKTDFEQGNFNDEKFINGKEESLEKDITVNDNNTNYSMFYKRNYR
Sbjct:  406 VGEGMEEAEFVEARSDLVALEQDYEDIATNSEDFIYKTEAHLLKKPPTFQQTSIKENTYEEREISKRSSKQKTDFEQGNFNDEKFINGKEESLEKDITVNDNNTNYSMFYKRNYR 520

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Planmine SMEST
Match: SMESG000043298.1 (SMESG000043298.1)

HSP 1 Score: 50.447 bits (119), Expect = 6.165e-8
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSEDFIY 110
            VGEGMEE EFVEAR DL+ LE+DYE++   SE+ ++
Sbjct:  372 VGEGMEEGEFVEARDDLIKLEKDYEEVGLPSEENVH 407

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Planmine SMEST
Match: SMESG000054547.1 (SMESG000054547.1)

HSP 1 Score: 49.6766 bits (117), Expect = 1.359e-7
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSED 101
            VGEGMEE EF EAR DL ALE+DYE++  +S D
Sbjct:  414 VGEGMEEGEFSEAREDLAALEKDYEEVGYDSAD 446

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Planmine SMEST
Match: SMESG000009951.1 (SMESG000009951.1)

HSP 1 Score: 48.9062 bits (115), Expect = 2.604e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGADS 439

[Close]

BLAST of Tubulin alpha chain, nucleomorph vs. Planmine SMEST
Match: SMESG000005505.1 (SMESG000005505.1)

HSP 1 Score: 48.521 bits (114), Expect = 2.867e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3

Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGIDS 439

The following BLAST results are available for this feature:

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Human
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Celegans
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Fly
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Zebrafish
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Xenopus
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Mouse
BLAST of Tubulin alpha chain, nucleomorph vs. UniProt/SwissProt
BLAST of Tubulin alpha chain, nucleomorph vs. TrEMBL
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Cavefish
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Sea Lamprey
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Yeast
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Nematostella
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Medaka
BLAST of Tubulin alpha chain, nucleomorph vs. Planmine SMEST

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
TUBA8	1.712e-7	70.97	tubulin alpha 8 [Source:HGNC Symbol;Acc:HGNC:12410...	[more]
TUBA8	2.077e-7	70.97	tubulin alpha 8 [Source:HGNC Symbol;Acc:HGNC:12410...	[more]
TUBA1C	3.767e-7	63.64	tubulin alpha 1c [Source:HGNC Symbol;Acc:HGNC:2076...	[more]
TUBA1C	4.564e-7	63.64	tubulin alpha 1c [Source:HGNC Symbol;Acc:HGNC:2076...	[more]
TUBA3C	5.324e-7	67.74	tubulin alpha 3c [Source:HGNC Symbol;Acc:HGNC:1240...	[more]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
tba-1	1.481e-7	67.74	Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:...	[more]
tba-1	1.596e-7	67.74	Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:...	[more]
Y19D2B.1	1.743e-7	67.74	pep chromosome:WBcel235:II:10922672:10922974:-1 ge...	[more]
tba-2	2.087e-7	67.74	Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Pro...	[more]
tba-2	2.087e-7	67.74	Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Pro...	[more]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3


Match Name	E-value	Identity	Description
alphaTub85E	3.500e-7	67.74	gene:FBgn0003886 transcript:FBtr0082087	[more]
alphaTub84B	3.638e-7	67.74	gene:FBgn0003884 transcript:FBtr0081639	[more]
alphaTub84D	3.854e-7	67.74	gene:FBgn0003885 transcript:FBtr0081538	[more]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
tuba4l	1.013e-7	66.67	tubulin, alpha 4 like [Source:ZFIN;Acc:ZDB-GENE-03...	[more]
tuba4l	1.029e-7	66.67	tubulin, alpha 4 like [Source:ZFIN;Acc:ZDB-GENE-03...	[more]
si:ch73-199e17.1	1.427e-7	70.97	si:ch73-199e17.1 [Source:ZFIN;Acc:ZDB-GENE-100921-...	[more]
si:ch73-199e17.1	1.445e-7	70.97	si:ch73-199e17.1 [Source:ZFIN;Acc:ZDB-GENE-100921-...	[more]
tuba8l4	1.713e-7	67.74	tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-...	[more]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
pex1	2.316e-7	67.74	peroxisomal biogenesis factor 1 [Source:Xenbase;Ac...	[more]
pex1	2.442e-7	67.74	peroxisomal biogenesis factor 1 [Source:Xenbase;Ac...	[more]
pex1	2.466e-7	67.74	peroxisomal biogenesis factor 1 [Source:Xenbase;Ac...	[more]
ENSXETT00000053522.1	2.661e-7	67.74	tubulin alpha-1A chain-like [Source:NCBI gene;Acc:...	[more]
ccdc171	2.661e-7	67.74	coiled-coil domain containing 171 [Source:Xenbase;...	[more]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Tuba8	1.234e-7	70.97	tubulin, alpha 8 [Source:MGI Symbol;Acc:MGI:185822...	[more]
Tuba3a	3.655e-7	67.74	tubulin, alpha 3A [Source:MGI Symbol;Acc:MGI:10954...	[more]
Tuba3b	3.655e-7	67.74	tubulin, alpha 3B [Source:MGI Symbol;Acc:MGI:10954...	[more]
Tuba1a	7.805e-7	64.52	tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869...	[more]
Tuba1b	8.267e-7	64.52	tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:10780...	[more]

BLAST of Tubulin alpha chain, nucleomorph vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q94572\|TBA3_HOMAM	2.835e-7	66.67	Tubulin alpha-3 chain OS=Homarus americanus OX=670...	[more]
sp\|Q5I2J3\|TBA_GIBZE	6.349e-7	74.19	Tubulin alpha chain OS=Gibberella zeae (strain PH-...	[more]
sp\|Q25008\|TBA1_HOMAM	6.996e-7	66.67	Tubulin alpha-1 chain OS=Homarus americanus OX=670...	[more]
sp\|Q25563\|TBA13_NAEPR	7.784e-7	68.75	Tubulin alpha-13 chain OS=Naegleria pringsheimi OX...	[more]
sp\|Q2HJB8\|TBA8_BOVIN	7.844e-7	70.97	Tubulin alpha-8 chain OS=Bos taurus OX=9913 GN=TUB...	[more]

BLAST of Tubulin alpha chain, nucleomorph vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 3


Match Name	E-value	Identity	Description
K7IW69	5.425e-6	74.19	Uncharacterized protein OS=Nasonia vitripennis OX=...	[more]
A0A098VQM8	7.069e-6	71.43	Tubulin alpha chain OS=Mitosporidium daphniae OX=1...	[more]
A0A1S0TEP5	9.410e-6	69.70	Tubulin alpha 2 OS=Loa loa OX=7209 GN=LOAG_15945 P...	[more]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSAMXT00000042562.1	1.583e-7	67.74	tubulin alpha chain [Source:NCBI gene;Acc:10303831...	[more]
si:ch211-114n24.6	1.584e-7	67.74	tubulin alpha-1A chain-like [Source:NCBI gene;Acc:...	[more]
ENSAMXT00000019223.2	1.598e-7	67.74	tubulin alpha-1 chain [Source:NCBI gene;Acc:103031...	[more]
ENSAMXT00000019222.2	2.050e-7	67.74	tubulin alpha-1 chain [Source:NCBI gene;Acc:103031...	[more]
si:ch73-199e17.1	2.235e-7	67.74	tubulin alpha chain-like [Source:NCBI gene;Acc:103...	[more]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2


Match Name	E-value	Identity	Description
TUB3	1.324e-6	64.52	Alpha-tubulin; associates with beta-tubulin (Tub2p...	[more]
TUB1	1.338e-6	64.52	Alpha-tubulin; associates with beta-tubulin (Tub2p...	[more]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO46332	3.787e-8	66.67	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO38064	1.064e-7	67.74	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO40779	1.154e-7	67.74	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO38091	1.154e-7	67.74	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO38067	1.154e-7	67.74	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSORLT00000020614.2	4.835e-8	58.54	tubulin alpha-1A chain [Source:NCBI gene;Acc:10535...	[more]
ENSORLT00000020468.2	1.060e-7	67.74	tubulin alpha-1A chain-like [Source:NCBI gene;Acc:...	[more]
ENSORLT00000047085.1	1.177e-7	67.74	tubulin alpha-1A chain-like [Source:NCBI gene;Acc:...	[more]
tuba8l3	1.443e-7	67.74	tubulin alpha chain [Source:NCBI gene;Acc:10116825...	[more]
ENSORLT00000000055.2	1.747e-7	67.74	tubulin alpha-1C chain [Source:NCBI gene;Acc:10116...	[more]

BLAST of Tubulin alpha chain, nucleomorph vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000057127.1	1.966e-76	100.00	SMESG000057127.1	[more]
SMESG000043298.1	6.165e-8	61.11	SMESG000043298.1	[more]
SMESG000054547.1	1.359e-7	66.67	SMESG000054547.1	[more]
SMESG000009951.1	2.604e-7	67.74	SMESG000009951.1	[more]
SMESG000005505.1	2.867e-7	67.74	SMESG000005505.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30018426 ID=SMED30018426|Name=Tubulin alpha chain, nucleomorph|organism=Schmidtea mediterranea sexual|type=transcript|length=435bp
ATGTTGGAGAAGGAATGGAAGAAGCGGAATTCGTTGAAGCGAGGAGTGAT
CTGGTTGCACTTGAGCAAGACTATGAAGACATTGCTACGAACTCGGAAGA
TTTCATCTATAAAACTGAAGCGCATCTTCTCAAAAAGCCTCCAACCTTTC
AGCAAACTTCGATCAAAGAAAATACTTATGAAGAAAGAGAGATTTCGAAA
CGATCTTCCAAGCAGAAAACAGACTTTGAACAAGGAAACTTTAATGACGA
AAAGTTTATCAATGGAAAAGAAGAATCTTTAGAAAAAGATATTACAGTAA
ATGATAATAACACTAACTATAGTATGTTTTATAAAAGAAACTACAGATAA
CGCTCAATAATAGACATCGCTGATGTCTAAAATTTGGACGGTGTTATATC
GCTGTACACAATAAATTTCTTCATTATTAAAAAAA

protein sequence of SMED30018426-orf-1

>SMED30018426-orf-1 ID=SMED30018426-orf-1|Name=SMED30018426-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=116bp
VGEGMEEAEFVEARSDLVALEQDYEDIATNSEDFIYKTEAHLLKKPPTFQ
QTSIKENTYEEREISKRSSKQKTDFEQGNFNDEKFINGKEESLEKDITVN
DNNTNYSMFYKRNYR*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000208	testis
PLANA:0002030	early male germ cell
PLANA:0003304	testis primordium

Vocabulary: **INTERPRO**
Term	Definition
IPR023123	Tubulin_C

Vocabulary: **molecular function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003924	GTPase activity
GO:0005200	structural constituent of cytoskeleton
GO:0005525	GTP binding

Vocabulary: **cellular component**
Term	Definition
GO:0005737	cytoplasm
GO:0005856	cytoskeleton
GO:0005874	microtubule

Vocabulary: **biological process**
Term	Definition
GO:0007010	cytoskeleton organization
GO:0007017	microtubule-based process

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023123	Tubulin, C-terminal	GENE3D	G3DSA:1.10.287.600		coord: 1..41 e-value: 9.8E-10 score: 40.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..78

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Tubulin alpha chain, nucleomorph

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 3

Owlery

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