Tubulin alpha chain, nucleomorph

Overview
NameTubulin alpha chain, nucleomorph
Smed IDSMED30018426
Length (bp)435
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Tubulin alpha chain, nucleomorph (SMED30018426) t-SNE clustered cells

Violin plots show distribution of expression levels for Tubulin alpha chain, nucleomorph (SMED30018426) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30018426

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
testisSMED30018426SMESG000057127.1 Contig143_SE3GPL10652PMID:20844018
Wang et al., 2010
whole organism adult hermaphrodite colorimetric in situ hybridization evidence
early male germ cellSMED30018426SMESG000057127.1 Contig143_SE3GPL10652PMID:20844018
Wang et al., 2010
whole organism asexual adult cDNA to DNA expression microarray evidence
testis primordiumSMED30018426SMESG000057127.1 Contig143_SE3GPL10652PMID:20844018
Wang et al., 2010
whole organism juvenile cDNA to DNA expression microarray evidence
Note: Hover over icons to view figure legend
Homology
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Human
Match: TUBA8 (tubulin alpha 8 [Source:HGNC Symbol;Acc:HGNC:12410])

HSP 1 Score: 50.447 bits (119), Expect = 1.712e-7
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++ T+S
Sbjct:  433 VGEGMEEGEFSEAREDLAALEKDYEEVGTDS 463          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Human
Match: TUBA8 (tubulin alpha 8 [Source:HGNC Symbol;Acc:HGNC:12410])

HSP 1 Score: 50.0618 bits (118), Expect = 2.077e-7
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++ T+S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGTDS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Human
Match: TUBA1C (tubulin alpha 1c [Source:HGNC Symbol;Acc:HGNC:20768])

HSP 1 Score: 49.6766 bits (117), Expect = 3.767e-7
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSED 101
            VGEGMEE EF EAR D+ ALE+DYE++  +S D
Sbjct:  479 VGEGMEEGEFSEAREDMAALEKDYEEVGADSAD 511          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Human
Match: TUBA1C (tubulin alpha 1c [Source:HGNC Symbol;Acc:HGNC:20768])

HSP 1 Score: 49.2914 bits (116), Expect = 4.564e-7
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSED 101
            VGEGMEE EF EAR D+ ALE+DYE++  +S D
Sbjct:  409 VGEGMEEGEFSEAREDMAALEKDYEEVGADSAD 441          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Human
Match: TUBA3C (tubulin alpha 3c [Source:HGNC Symbol;Acc:HGNC:12408])

HSP 1 Score: 48.9062 bits (115), Expect = 5.324e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGVDS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Celegans
Match: tba-1 (Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:O18688])

HSP 1 Score: 49.2914 bits (116), Expect = 1.481e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  412 VGEGMEEGEFTEAREDLAALEKDYEEVGADS 442          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Celegans
Match: tba-1 (Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:O18688])

HSP 1 Score: 49.2914 bits (116), Expect = 1.596e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  407 VGEGMEEGEFTEAREDLAALEKDYEEVGADS 437          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Celegans
Match: Y19D2B.1 (pep chromosome:WBcel235:II:10922672:10922974:-1 gene:WBGene00012489.1 transcript:Y19D2B.1.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y19D2B.1)

HSP 1 Score: 46.595 bits (109), Expect = 1.743e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:   44 VGEGMEEGEFTEAREDLAALEKDYEEVGADS 74          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Celegans
Match: tba-2 (Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:P34690])

HSP 1 Score: 48.9062 bits (115), Expect = 2.087e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  407 VGEGMEEGEFTEAREDLAALEKDYEEVGADS 437          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Celegans
Match: tba-2 (Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:P34690])

HSP 1 Score: 48.9062 bits (115), Expect = 2.087e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  407 VGEGMEEGEFTEAREDLAALEKDYEEVGADS 437          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Fly
Match: alphaTub85E (gene:FBgn0003886 transcript:FBtr0082087)

HSP 1 Score: 48.521 bits (114), Expect = 3.500e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFAEAREDLAALEKDYEEVGIDS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Fly
Match: alphaTub84B (gene:FBgn0003884 transcript:FBtr0081639)

HSP 1 Score: 48.521 bits (114), Expect = 3.638e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGMDS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Fly
Match: alphaTub84D (gene:FBgn0003885 transcript:FBtr0081538)

HSP 1 Score: 48.521 bits (114), Expect = 3.854e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGMDS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Zebrafish
Match: tuba4l (tubulin, alpha 4 like [Source:ZFIN;Acc:ZDB-GENE-030131-5588])

HSP 1 Score: 50.447 bits (119), Expect = 1.013e-7
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSED 101
            VGEGMEE EF EAR D+ ALE+DYE++A +S D
Sbjct:  415 VGEGMEEGEFSEAREDMAALEKDYEEVAADSTD 447          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Zebrafish
Match: tuba4l (tubulin, alpha 4 like [Source:ZFIN;Acc:ZDB-GENE-030131-5588])

HSP 1 Score: 50.447 bits (119), Expect = 1.029e-7
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSED 101
            VGEGMEE EF EAR D+ ALE+DYE++A +S D
Sbjct:  408 VGEGMEEGEFSEAREDMAALEKDYEEVAADSTD 440          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Zebrafish
Match: si:ch73-199e17.1 (si:ch73-199e17.1 [Source:ZFIN;Acc:ZDB-GENE-100921-8])

HSP 1 Score: 50.0618 bits (118), Expect = 1.427e-7
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++ T+S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGTDS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Zebrafish
Match: si:ch73-199e17.1 (si:ch73-199e17.1 [Source:ZFIN;Acc:ZDB-GENE-100921-8])

HSP 1 Score: 50.0618 bits (118), Expect = 1.445e-7
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++ T+S
Sbjct:  437 VGEGMEEGEFSEAREDLAALEKDYEEVGTDS 467          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Zebrafish
Match: tuba8l4 (tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860])

HSP 1 Score: 50.0618 bits (118), Expect = 1.713e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  409 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Xenopus
Match: pex1 (peroxisomal biogenesis factor 1 [Source:Xenbase;Acc:XB-GENE-985415])

HSP 1 Score: 50.0618 bits (118), Expect = 2.316e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  419 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 449          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Xenopus
Match: pex1 (peroxisomal biogenesis factor 1 [Source:Xenbase;Acc:XB-GENE-985415])

HSP 1 Score: 50.0618 bits (118), Expect = 2.442e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  409 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Xenopus
Match: pex1 (peroxisomal biogenesis factor 1 [Source:Xenbase;Acc:XB-GENE-985415])

HSP 1 Score: 50.0618 bits (118), Expect = 2.466e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  409 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Xenopus
Match: ENSXETT00000053522.1 (tubulin alpha-1A chain-like [Source:NCBI gene;Acc:100497157])

HSP 1 Score: 49.6766 bits (117), Expect = 2.661e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  408 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 438          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Xenopus
Match: ccdc171 (coiled-coil domain containing 171 [Source:Xenbase;Acc:XB-GENE-1003303])

HSP 1 Score: 49.6766 bits (117), Expect = 2.661e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  408 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 438          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Mouse
Match: Tuba8 (tubulin, alpha 8 [Source:MGI Symbol;Acc:MGI:1858225])

HSP 1 Score: 50.447 bits (119), Expect = 1.234e-7
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++ T+S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGTDS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Mouse
Match: Tuba3a (tubulin, alpha 3A [Source:MGI Symbol;Acc:MGI:1095406])

HSP 1 Score: 48.9062 bits (115), Expect = 3.655e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGVDS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Mouse
Match: Tuba3b (tubulin, alpha 3B [Source:MGI Symbol;Acc:MGI:1095408])

HSP 1 Score: 48.9062 bits (115), Expect = 3.655e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGVDS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Mouse
Match: Tuba1a (tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869])

HSP 1 Score: 48.1358 bits (113), Expect = 7.805e-7
Identity = 20/31 (64.52%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDMAALEKDYEEVGVDS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Mouse
Match: Tuba1b (tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804])

HSP 1 Score: 48.1358 bits (113), Expect = 8.267e-7
Identity = 20/31 (64.52%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDMAALEKDYEEVGVDS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. UniProt/SwissProt
Match: sp|Q94572|TBA3_HOMAM (Tubulin alpha-3 chain OS=Homarus americanus OX=6706 PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.835e-7
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSED 101
            VGEGMEE EF EAR DL ALE+DYE++  +S D
Sbjct:  409 VGEGMEEGEFTEAREDLAALEKDYEEVGVDSAD 441          
BLAST of Tubulin alpha chain, nucleomorph vs. UniProt/SwissProt
Match: sp|Q5I2J3|TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) OX=229533 GN=TUB1 PE=3 SV=2)

HSP 1 Score: 50.8322 bits (120), Expect = 6.349e-7
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++AT+S
Sbjct:  409 VGEGMEEGEFSEAREDLAALERDYEEVATDS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. UniProt/SwissProt
Match: sp|Q25008|TBA1_HOMAM (Tubulin alpha-1 chain OS=Homarus americanus OX=6706 PE=2 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 6.996e-7
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSED 101
            VGEGMEE EF EAR DL ALE+DYE++  +S D
Sbjct:  409 VGEGMEEGEFTEAREDLAALEKDYEEVGMDSAD 441          
BLAST of Tubulin alpha chain, nucleomorph vs. UniProt/SwissProt
Match: sp|Q25563|TBA13_NAEPR (Tubulin alpha-13 chain OS=Naegleria pringsheimi OX=234921 GN=TUBA13 PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 7.784e-7
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSE 98
            VGEGMEE EF EAR DL ALE+DYE++ T S+
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGTESQ 440          
BLAST of Tubulin alpha chain, nucleomorph vs. UniProt/SwissProt
Match: sp|Q2HJB8|TBA8_BOVIN (Tubulin alpha-8 chain OS=Bos taurus OX=9913 GN=TUBA8 PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 7.844e-7
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++ T+S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGTDS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. TrEMBL
Match: K7IW69 (Uncharacterized protein OS=Nasonia vitripennis OX=7425 PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 5.425e-6
Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF+EAR DL ALE+DYE++AT+S
Sbjct:  397 VGEGMEEVEFIEAREDLAALERDYEEVATDS 427          
BLAST of Tubulin alpha chain, nucleomorph vs. TrEMBL
Match: A0A098VQM8 (Tubulin alpha chain OS=Mitosporidium daphniae OX=1485682 GN=DI09_43p40 PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 7.069e-6
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSEDFI 107
            VGEGMEE EF EAR DL ALE+DYE +AT+S DF+
Sbjct:  407 VGEGMEEGEFSEAREDLAALEKDYEQLATDSGDFM 441          
BLAST of Tubulin alpha chain, nucleomorph vs. TrEMBL
Match: A0A1S0TEP5 (Tubulin alpha 2 OS=Loa loa OX=7209 GN=LOAG_15945 PE=4 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 9.410e-6
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSED 101
            +GEGMEE EF EAR DL ALE+DYE++A NS D
Sbjct:   33 IGEGMEEGEFAEAREDLAALEKDYEEVALNSYD 65          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Cavefish
Match: ENSAMXT00000042562.1 (tubulin alpha chain [Source:NCBI gene;Acc:103038315])

HSP 1 Score: 49.6766 bits (117), Expect = 1.583e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  409 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Cavefish
Match: si:ch211-114n24.6 (tubulin alpha-1A chain-like [Source:NCBI gene;Acc:103034569])

HSP 1 Score: 49.6766 bits (117), Expect = 1.584e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  409 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Cavefish
Match: ENSAMXT00000019223.2 (tubulin alpha-1 chain [Source:NCBI gene;Acc:103031418])

HSP 1 Score: 49.6766 bits (117), Expect = 1.598e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++ T++
Sbjct:  410 VGEGMEEGEFSEAREDLAALEKDYEEVGTDT 440          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Cavefish
Match: ENSAMXT00000019222.2 (tubulin alpha-1 chain [Source:NCBI gene;Acc:103031418])

HSP 1 Score: 49.2914 bits (116), Expect = 2.050e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++ T++
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGTDT 439          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Cavefish
Match: si:ch73-199e17.1 (tubulin alpha chain-like [Source:NCBI gene;Acc:103038622])

HSP 1 Score: 49.2914 bits (116), Expect = 2.235e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  408 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 438          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Yeast
Match: TUB3 (Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules; expressed at lower level than Tub1p; TUB3 has a paralog, TUB1, that arose from the whole genome duplication [Source:SGD;Acc:S000004593])

HSP 1 Score: 44.669 bits (104), Expect = 1.324e-6
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DY ++  +S
Sbjct:  410 VGEGMEEGEFTEAREDLAALERDYIEVGADS 440          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Yeast
Match: TUB1 (Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules; relative distribution to nuclear foci increases upon DNA replication stress; TUB1 has a paralog, TUB3, that arose from the whole genome duplication [Source:SGD;Acc:S000004550])

HSP 1 Score: 44.669 bits (104), Expect = 1.338e-6
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DY ++  +S
Sbjct:  410 VGEGMEEGEFTEAREDLAALERDYIEVGADS 440          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Nematostella
Match: EDO46332 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RQB6])

HSP 1 Score: 50.447 bits (119), Expect = 3.787e-8
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSED 101
            VGEGMEE EF EAR DL ALE+DYE++  +S D
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGADSPD 441          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Nematostella
Match: EDO38064 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SDX8])

HSP 1 Score: 48.9062 bits (115), Expect = 1.064e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  399 VGEGMEEGEFSEAREDLAALEKDYEEVGVDS 429          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Nematostella
Match: EDO40779 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S698])

HSP 1 Score: 48.9062 bits (115), Expect = 1.154e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGADS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Nematostella
Match: EDO38091 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SDY0])

HSP 1 Score: 48.9062 bits (115), Expect = 1.154e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGVDS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Nematostella
Match: EDO38067 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SDY3])

HSP 1 Score: 48.9062 bits (115), Expect = 1.154e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGVDS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Medaka
Match: ENSORLT00000020614.2 (tubulin alpha-1A chain [Source:NCBI gene;Acc:105354455])

HSP 1 Score: 51.2174 bits (121), Expect = 4.835e-8
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS-EDFIYKTEA 122
            VGEGMEE EF EAR D+ ALE+DYE++  +S ED  Y  E+
Sbjct:  411 VGEGMEEGEFSEAREDMAALEKDYEEVGVDSIEDISYNNES 451          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Medaka
Match: ENSORLT00000020468.2 (tubulin alpha-1A chain-like [Source:NCBI gene;Acc:101155224])

HSP 1 Score: 50.447 bits (119), Expect = 1.060e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  451 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 481          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Medaka
Match: ENSORLT00000047085.1 (tubulin alpha-1A chain-like [Source:NCBI gene;Acc:101155224])

HSP 1 Score: 50.0618 bits (118), Expect = 1.177e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  473 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 503          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Medaka
Match: tuba8l3 (tubulin alpha chain [Source:NCBI gene;Acc:101168255])

HSP 1 Score: 50.0618 bits (118), Expect = 1.443e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  409 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Medaka
Match: ENSORLT00000000055.2 (tubulin alpha-1C chain [Source:NCBI gene;Acc:101166777])

HSP 1 Score: 49.6766 bits (117), Expect = 1.747e-7
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR D+ ALE+DYE++ T+S
Sbjct:  409 VGEGMEEGEFSEAREDMAALEKDYEEVGTDS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. Planmine SMEST
Match: SMESG000057127.1 (SMESG000057127.1)

HSP 1 Score: 236.113 bits (601), Expect = 1.966e-76
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSEDFIYKTEAHLLKKPPTFQQTSIKENTYEEREISKRSSKQKTDFEQGNFNDEKFINGKEESLEKDITVNDNNTNYSMFYKRNYR 347
            VGEGMEEAEFVEARSDLVALEQDYEDIATNSEDFIYKTEAHLLKKPPTFQQTSIKENTYEEREISKRSSKQKTDFEQGNFNDEKFINGKEESLEKDITVNDNNTNYSMFYKRNYR
Sbjct:  406 VGEGMEEAEFVEARSDLVALEQDYEDIATNSEDFIYKTEAHLLKKPPTFQQTSIKENTYEEREISKRSSKQKTDFEQGNFNDEKFINGKEESLEKDITVNDNNTNYSMFYKRNYR 520          
BLAST of Tubulin alpha chain, nucleomorph vs. Planmine SMEST
Match: SMESG000043298.1 (SMESG000043298.1)

HSP 1 Score: 50.447 bits (119), Expect = 6.165e-8
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSEDFIY 110
            VGEGMEE EFVEAR DL+ LE+DYE++   SE+ ++
Sbjct:  372 VGEGMEEGEFVEARDDLIKLEKDYEEVGLPSEENVH 407          
BLAST of Tubulin alpha chain, nucleomorph vs. Planmine SMEST
Match: SMESG000054547.1 (SMESG000054547.1)

HSP 1 Score: 49.6766 bits (117), Expect = 1.359e-7
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNSED 101
            VGEGMEE EF EAR DL ALE+DYE++  +S D
Sbjct:  414 VGEGMEEGEFSEAREDLAALEKDYEEVGYDSAD 446          
BLAST of Tubulin alpha chain, nucleomorph vs. Planmine SMEST
Match: SMESG000009951.1 (SMESG000009951.1)

HSP 1 Score: 48.9062 bits (115), Expect = 2.604e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGADS 439          
BLAST of Tubulin alpha chain, nucleomorph vs. Planmine SMEST
Match: SMESG000005505.1 (SMESG000005505.1)

HSP 1 Score: 48.521 bits (114), Expect = 2.867e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3
Query:    3 VGEGMEEAEFVEARSDLVALEQDYEDIATNS 95
            VGEGMEE EF EAR DL ALE+DYE++  +S
Sbjct:  409 VGEGMEEGEFSEAREDLAALEKDYEEVGIDS 439          
The following BLAST results are available for this feature:
BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
TUBA81.712e-770.97tubulin alpha 8 [Source:HGNC Symbol;Acc:HGNC:12410... [more]
TUBA82.077e-770.97tubulin alpha 8 [Source:HGNC Symbol;Acc:HGNC:12410... [more]
TUBA1C3.767e-763.64tubulin alpha 1c [Source:HGNC Symbol;Acc:HGNC:2076... [more]
TUBA1C4.564e-763.64tubulin alpha 1c [Source:HGNC Symbol;Acc:HGNC:2076... [more]
TUBA3C5.324e-767.74tubulin alpha 3c [Source:HGNC Symbol;Acc:HGNC:1240... [more]
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BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
tba-11.481e-767.74Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:... [more]
tba-11.596e-767.74Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:... [more]
Y19D2B.11.743e-767.74pep chromosome:WBcel235:II:10922672:10922974:-1 ge... [more]
tba-22.087e-767.74Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Pro... [more]
tba-22.087e-767.74Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Pro... [more]
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BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
alphaTub85E3.500e-767.74gene:FBgn0003886 transcript:FBtr0082087[more]
alphaTub84B3.638e-767.74gene:FBgn0003884 transcript:FBtr0081639[more]
alphaTub84D3.854e-767.74gene:FBgn0003885 transcript:FBtr0081538[more]
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BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
tuba4l1.013e-766.67tubulin, alpha 4 like [Source:ZFIN;Acc:ZDB-GENE-03... [more]
tuba4l1.029e-766.67tubulin, alpha 4 like [Source:ZFIN;Acc:ZDB-GENE-03... [more]
si:ch73-199e17.11.427e-770.97si:ch73-199e17.1 [Source:ZFIN;Acc:ZDB-GENE-100921-... [more]
si:ch73-199e17.11.445e-770.97si:ch73-199e17.1 [Source:ZFIN;Acc:ZDB-GENE-100921-... [more]
tuba8l41.713e-767.74tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-... [more]
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BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
pex12.316e-767.74peroxisomal biogenesis factor 1 [Source:Xenbase;Ac... [more]
pex12.442e-767.74peroxisomal biogenesis factor 1 [Source:Xenbase;Ac... [more]
pex12.466e-767.74peroxisomal biogenesis factor 1 [Source:Xenbase;Ac... [more]
ENSXETT00000053522.12.661e-767.74tubulin alpha-1A chain-like [Source:NCBI gene;Acc:... [more]
ccdc1712.661e-767.74coiled-coil domain containing 171 [Source:Xenbase;... [more]
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BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Tuba81.234e-770.97tubulin, alpha 8 [Source:MGI Symbol;Acc:MGI:185822... [more]
Tuba3a3.655e-767.74tubulin, alpha 3A [Source:MGI Symbol;Acc:MGI:10954... [more]
Tuba3b3.655e-767.74tubulin, alpha 3B [Source:MGI Symbol;Acc:MGI:10954... [more]
Tuba1a7.805e-764.52tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869... [more]
Tuba1b8.267e-764.52tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:10780... [more]
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BLAST of Tubulin alpha chain, nucleomorph vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q94572|TBA3_HOMAM2.835e-766.67Tubulin alpha-3 chain OS=Homarus americanus OX=670... [more]
sp|Q5I2J3|TBA_GIBZE6.349e-774.19Tubulin alpha chain OS=Gibberella zeae (strain PH-... [more]
sp|Q25008|TBA1_HOMAM6.996e-766.67Tubulin alpha-1 chain OS=Homarus americanus OX=670... [more]
sp|Q25563|TBA13_NAEPR7.784e-768.75Tubulin alpha-13 chain OS=Naegleria pringsheimi OX... [more]
sp|Q2HJB8|TBA8_BOVIN7.844e-770.97Tubulin alpha-8 chain OS=Bos taurus OX=9913 GN=TUB... [more]
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BLAST of Tubulin alpha chain, nucleomorph vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
K7IW695.425e-674.19Uncharacterized protein OS=Nasonia vitripennis OX=... [more]
A0A098VQM87.069e-671.43Tubulin alpha chain OS=Mitosporidium daphniae OX=1... [more]
A0A1S0TEP59.410e-669.70Tubulin alpha 2 OS=Loa loa OX=7209 GN=LOAG_15945 P... [more]
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BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSAMXT00000042562.11.583e-767.74tubulin alpha chain [Source:NCBI gene;Acc:10303831... [more]
si:ch211-114n24.61.584e-767.74tubulin alpha-1A chain-like [Source:NCBI gene;Acc:... [more]
ENSAMXT00000019223.21.598e-767.74tubulin alpha-1 chain [Source:NCBI gene;Acc:103031... [more]
ENSAMXT00000019222.22.050e-767.74tubulin alpha-1 chain [Source:NCBI gene;Acc:103031... [more]
si:ch73-199e17.12.235e-767.74tubulin alpha chain-like [Source:NCBI gene;Acc:103... [more]
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BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2
Match NameE-valueIdentityDescription
TUB31.324e-664.52Alpha-tubulin; associates with beta-tubulin (Tub2p... [more]
TUB11.338e-664.52Alpha-tubulin; associates with beta-tubulin (Tub2p... [more]
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BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO463323.787e-866.67Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO380641.064e-767.74Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO407791.154e-767.74Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO380911.154e-767.74Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO380671.154e-767.74Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Tubulin alpha chain, nucleomorph vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSORLT00000020614.24.835e-858.54tubulin alpha-1A chain [Source:NCBI gene;Acc:10535... [more]
ENSORLT00000020468.21.060e-767.74tubulin alpha-1A chain-like [Source:NCBI gene;Acc:... [more]
ENSORLT00000047085.11.177e-767.74tubulin alpha-1A chain-like [Source:NCBI gene;Acc:... [more]
tuba8l31.443e-767.74tubulin alpha chain [Source:NCBI gene;Acc:10116825... [more]
ENSORLT00000000055.21.747e-767.74tubulin alpha-1C chain [Source:NCBI gene;Acc:10116... [more]
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BLAST of Tubulin alpha chain, nucleomorph vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000057127.11.966e-76100.00SMESG000057127.1[more]
SMESG000043298.16.165e-861.11SMESG000043298.1[more]
SMESG000054547.11.359e-766.67SMESG000054547.1[more]
SMESG000009951.12.604e-767.74SMESG000009951.1[more]
SMESG000005505.12.867e-767.74SMESG000005505.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30018426 ID=SMED30018426|Name=Tubulin alpha chain, nucleomorph|organism=Schmidtea mediterranea sexual|type=transcript|length=435bp
ATGTTGGAGAAGGAATGGAAGAAGCGGAATTCGTTGAAGCGAGGAGTGAT
CTGGTTGCACTTGAGCAAGACTATGAAGACATTGCTACGAACTCGGAAGA
TTTCATCTATAAAACTGAAGCGCATCTTCTCAAAAAGCCTCCAACCTTTC
AGCAAACTTCGATCAAAGAAAATACTTATGAAGAAAGAGAGATTTCGAAA
CGATCTTCCAAGCAGAAAACAGACTTTGAACAAGGAAACTTTAATGACGA
AAAGTTTATCAATGGAAAAGAAGAATCTTTAGAAAAAGATATTACAGTAA
ATGATAATAACACTAACTATAGTATGTTTTATAAAAGAAACTACAGATAA
CGCTCAATAATAGACATCGCTGATGTCTAAAATTTGGACGGTGTTATATC
GCTGTACACAATAAATTTCTTCATTATTAAAAAAA
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protein sequence of SMED30018426-orf-1

>SMED30018426-orf-1 ID=SMED30018426-orf-1|Name=SMED30018426-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=116bp
VGEGMEEAEFVEARSDLVALEQDYEDIATNSEDFIYKTEAHLLKKPPTFQ
QTSIKENTYEEREISKRSSKQKTDFEQGNFNDEKFINGKEESLEKDITVN
DNNTNYSMFYKRNYR*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000208testis
PLANA:0002030early male germ cell
PLANA:0003304testis primordium
Vocabulary: INTERPRO
TermDefinition
IPR023123Tubulin_C
Vocabulary: molecular function
TermDefinition
GO:0000166nucleotide binding
GO:0003924GTPase activity
GO:0005200structural constituent of cytoskeleton
GO:0005525GTP binding
Vocabulary: cellular component
TermDefinition
GO:0005737cytoplasm
GO:0005856cytoskeleton
GO:0005874microtubule
Vocabulary: biological process
TermDefinition
GO:0007010cytoskeleton organization
GO:0007017microtubule-based process
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023123Tubulin, C-terminalGENE3DG3DSA:1.10.287.600coord: 1..41
e-value: 9.8E-10
score: 40.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..78