Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30018385 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 11
Homology
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Human
Match: HADH (hydroxyacyl-CoA dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4799]) HSP 1 Score: 80.8777 bits (198), Expect = 2.235e-20 Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +K VTVIG GLMG+GIAQV+A +G+ V L+D + +L K+ I+ +L++VA KKFA+ + ++FV L I STD+ +DL+VEAI+E Sbjct: 27 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVE 122
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Human
Match: HADH (hydroxyacyl-CoA dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4799]) HSP 1 Score: 83.9593 bits (206), Expect = 4.359e-20 Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +K VTVIG GLMG+GIAQV+A +G+ V L+D + +L K+ I+ +L++VA KKFA+ + ++FV L I STD+ +DL+VEAI+E Sbjct: 86 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVE 181
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Human
Match: HADH (hydroxyacyl-CoA dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4799]) HSP 1 Score: 81.2629 bits (199), Expect = 1.113e-19 Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +K VTVIG GLMG+GIAQV+A +G+ V L+D + +L K+ I+ +L++VA KKFA+ + ++FV L I STD+ +DL+VEAI+E Sbjct: 27 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVE 122
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Human
Match: HADH (hydroxyacyl-CoA dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4799]) HSP 1 Score: 80.8777 bits (198), Expect = 3.460e-19 Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +K VTVIG GLMG+GIAQV+A +G+ V L+D + +L K+ I+ +L++VA KKFA+ + ++FV L I STD+ +DL+VEAI+E Sbjct: 27 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVE 122
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Human
Match: HADH (hydroxyacyl-CoA dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4799]) HSP 1 Score: 80.8777 bits (198), Expect = 3.528e-19 Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +K VTVIG GLMG+GIAQV+A +G+ V L+D + +L K+ I+ +L++VA KKFA+ + ++FV L I STD+ +DL+VEAI+E Sbjct: 27 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVE 122
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Celegans
Match: B0272.3 (Probable 3-hydroxyacyl-CoA dehydrogenase B0272.3 [Source:UniProtKB/Swiss-Prot;Acc:P41938]) HSP 1 Score: 82.8037 bits (203), Expect = 2.925e-20 Identity = 46/96 (47.92%), Postives = 65/96 (67.71%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 + VT+IG GLMGSGIAQVSA + V ++D QS L+KA I +L+RVA KK AD + Q VS L I++ST+ +++ K +DL++EAI+E Sbjct: 22 INNVTIIGAGLMGSGIAQVSANAKLNVTVVDSNQSALEKAQQGIANSLKRVAKKKHADDAAAQTALVSSVLDRIKMSTNVSDSVKDADLVIEAIVE 117
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Celegans
Match: hacd-1 (Hydroxy-Acyl-CoA Dehydrogenase [Source:UniProtKB/TrEMBL;Acc:O44608]) HSP 1 Score: 63.929 bits (154), Expect = 2.242e-13 Identity = 42/96 (43.75%), Postives = 54/96 (56.25%), Query Frame = 1 Query: 10 VTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQ---EKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 V + G G+MGSGIAQV Q+GY VNL + L +A IK NL RVA KK D E E+ L L+QI TD AA+ + + +EA+ E Sbjct: 13 VAIFGAGMMGSGIAQVCLQAGYPVNLYGRSEKKLLEARETIKKNLIRVASKKKTDVPMEPAALEEIAQIQLDLLQIHTDIPSAAEDAAMAIEAVAE 108
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Celegans
Match: F54C8.1 (Probable 3-hydroxyacyl-CoA dehydrogenase F54C8.1 [Source:UniProtKB/Swiss-Prot;Acc:P34439]) HSP 1 Score: 62.3882 bits (150), Expect = 7.302e-13 Identity = 39/97 (40.21%), Postives = 59/97 (60.82%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVK-KFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 ++ V ++G G MGSGIAQV+A SG+ V L DV + LD+AM I ++ ++ K K DK E+ FV+ + I+ + + A +DLI+EA IE Sbjct: 11 IRNVAIVGSGQMGSGIAQVTASSGFNVMLADVNKKALDRAMKAISQSVTHLSKKQKGTDK--EKSDFVTLTMSRIKTCNNVSTAVADADLIIEAAIE 105
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Celegans
Match: ech-1.1 (Enoyl-CoA Hydratase [Source:UniProtKB/TrEMBL;Acc:O17612]) HSP 1 Score: 46.2098 bits (108), Expect = 5.511e-7 Identity = 27/93 (29.03%), Postives = 50/93 (53.76%), Query Frame = 1 Query: 10 VTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 + V+G G MG+GIA V+ G + L+D Q+ +++ + +L R ++ K+ E+EK + + I S A K +D+++EA+ E Sbjct: 355 IAVVGAGFMGAGIANVTINKGIRTVLLDANQAGVERGQNHVATHLNRQLKRQKISKL-EREKIYNHLVPTIDYS-----AMKNADVVIEAVFE 441
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Celegans
Match: ech-1.2 (Enoyl-CoA Hydratase [Source:UniProtKB/TrEMBL;Acc:Q9GYT0]) HSP 1 Score: 45.0542 bits (105), Expect = 1.371e-6 Identity = 26/93 (27.96%), Postives = 52/93 (55.91%), Query Frame = 1 Query: 10 VTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 + V+G GLMG+GIA V+ G + L+D + +++ +I +L + ++ +K+ E+E+ + + I S A K +D+++EA+ E Sbjct: 381 IAVVGAGLMGAGIANVTIDKGIRTVLLDANPAGVERGQNQIATHLNKQVKRRKINKL-EKERIYNHLVPTIDYS-----AMKNADVVIEAVFE 467
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Fly
Match: Mtpalpha (gene:FBgn0028479 transcript:FBtr0079858) HSP 1 Score: 51.9878 bits (123), Expect = 5.348e-9 Identity = 35/96 (36.46%), Postives = 60/96 (62.50%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +KTV V+G GLMG+GI QVS GY+V + D ++ L + +G+++ L+ AVK+ +IS E+ L ++ + D ++ K +D+I+EA+ E Sbjct: 373 VKTVGVLGAGLMGAGIVQVSVDKGYQVVMKDATEAGLARGIGQVQKGLE-TAVKR--KRISALER--DQTLASLRPTLDYSD-FKNADIIIEAVFE 462
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Fly
Match: Mtpalpha (gene:FBgn0028479 transcript:FBtr0079857) HSP 1 Score: 51.9878 bits (123), Expect = 5.384e-9 Identity = 35/96 (36.46%), Postives = 60/96 (62.50%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +KTV V+G GLMG+GI QVS GY+V + D ++ L + +G+++ L+ AVK+ +IS E+ L ++ + D ++ K +D+I+EA+ E Sbjct: 334 VKTVGVLGAGLMGAGIVQVSVDKGYQVVMKDATEAGLARGIGQVQKGLE-TAVKR--KRISALER--DQTLASLRPTLDYSD-FKNADIIIEAVFE 423
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Zebrafish
Match: hadh (hydroxyacyl-CoA dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-040801-261]) HSP 1 Score: 84.7297 bits (208), Expect = 7.041e-21 Identity = 46/96 (47.92%), Postives = 65/96 (67.71%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +K VTVIG GLMG+GIAQV+A +G+ V L+D +L+K+ I+ +L+RVA KKFA+K + E FV L + STD+ +DL+VEAI+E Sbjct: 22 IKHVTVIGGGLMGAGIAQVAASTGHSVVLVDTSADILNKSAKGIENSLKRVAKKKFAEKPEDGEAFVQKVLKNVSTSTDAASVVHGTDLVVEAIVE 117
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Xenopus
Match: vps41 (VPS41, HOPS complex subunit [Source:Xenbase;Acc:XB-GENE-999710]) HSP 1 Score: 76.6406 bits (187), Expect = 1.080e-17 Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +K VTVIG GLMG+GIAQV+A +G+ V L+D +L K+ I+ +L+RV K FADK +F+ L STD +DL+VEAI+E Sbjct: 28 IKHVTVIGGGLMGAGIAQVAASTGHTVVLVDQTDDILKKSRKTIEDSLKRVTKKMFADKPEAASQFIEKILANFTTSTDPAAVVHSTDLVVEAIVE 123
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Xenopus
Match: vps41 (VPS41, HOPS complex subunit [Source:Xenbase;Acc:XB-GENE-999710]) HSP 1 Score: 76.2554 bits (186), Expect = 1.550e-17 Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +K VTVIG GLMG+GIAQV+A +G+ V L+D +L K+ I+ +L+RV K FADK +F+ L STD +DL+VEAI+E Sbjct: 26 IKHVTVIGGGLMGAGIAQVAASTGHTVVLVDQTDDILKKSRKTIEDSLKRVTKKMFADKPEAASQFIEKILANFTTSTDPAAVVHSTDLVVEAIVE 121
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Mouse
Match: Hadh (hydroxyacyl-Coenzyme A dehydrogenase [Source:MGI Symbol;Acc:MGI:96009]) HSP 1 Score: 77.7962 bits (190), Expect = 3.880e-18 Identity = 42/96 (43.75%), Postives = 63/96 (65.62%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +K VTVIG GLMG+GIAQV+A +G+ V L+D + +L K+ I+ +L+R+A KKF + ++FV L + STD+ +DL+VEAI+E Sbjct: 27 IKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLKRMAKKKFTENPKAGDEFVEKTLSCLSTSTDAASVVHSTDLVVEAIVE 122
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. UniProt/SwissProt
Match: sp|P41938|HCDH2_CAEEL (Probable 3-hydroxyacyl-CoA dehydrogenase B0272.3 OS=Caenorhabditis elegans OX=6239 GN=B0272.3 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 3.721e-19 Identity = 46/96 (47.92%), Postives = 65/96 (67.71%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 + VT+IG GLMGSGIAQVSA + V ++D QS L+KA I +L+RVA KK AD + Q VS L I++ST+ +++ K +DL++EAI+E Sbjct: 22 INNVTIIGAGLMGSGIAQVSANAKLNVTVVDSNQSALEKAQQGIANSLKRVAKKKHADDAAAQTALVSSVLDRIKMSTNVSDSVKDADLVIEAIVE 117
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. UniProt/SwissProt
Match: sp|Q16836|HCDH_HUMAN (Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=HADH PE=1 SV=3) HSP 1 Score: 80.8777 bits (198), Expect = 1.662e-18 Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +K VTVIG GLMG+GIAQV+A +G+ V L+D + +L K+ I+ +L++VA KKFA+ + ++FV L I STD+ +DL+VEAI+E Sbjct: 27 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVE 122
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. UniProt/SwissProt
Match: sp|P00348|HCDH_PIG (Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Sus scrofa OX=9823 GN=HADH PE=1 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 6.456e-18 Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +K VTVIG GLMG+GIAQV+A +G+ V L+D + +L K+ I+ +L++VA KKFA+ ++FV L I STD+ +DL+VEAI+E Sbjct: 27 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVE 122
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. UniProt/SwissProt
Match: sp|Q61425|HCDH_MOUSE (Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Hadh PE=1 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 2.714e-17 Identity = 42/96 (43.75%), Postives = 63/96 (65.62%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +K VTVIG GLMG+GIAQV+A +G+ V L+D + +L K+ I+ +L+R+A KKF + ++FV L + STD+ +DL+VEAI+E Sbjct: 27 IKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLKRMAKKKFTENPKAGDEFVEKTLSCLSTSTDAASVVHSTDLVVEAIVE 122
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. UniProt/SwissProt
Match: sp|Q9WVK7|HCDH_RAT (Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Hadh PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.037e-17 Identity = 42/96 (43.75%), Postives = 63/96 (65.62%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +K VTVIG GLMG+GIAQV+A +G+ V L+D + +L K+ I+ +L+R+A KKF + ++FV L + STD+ +DL+VEAI+E Sbjct: 27 IKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLKRMAKKKFTENPKAADEFVEKTLSSLSTSTDAASVVHSTDLVVEAIVE 122
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. TrEMBL
Match: A0A448WHE8 (3HCDH_N domain-containing protein OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS5267 PE=4 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.607e-26 Identity = 50/96 (52.08%), Postives = 72/96 (75.00%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +KT+TVIG GLMG+GI Q+SAQ+GY V L+D + +LL K++G ++ +L+RVA KKF+D + +KFVSD L + +STD A SDL++EAI+E Sbjct: 21 IKTITVIGAGLMGAGITQISAQNGYSVRLVDRQDNLLQKSLGSLENSLKRVAKKKFSDDLPASKKFVSDILSNVTVSTDPKSAVVGSDLVIEAIVE 116
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. TrEMBL
Match: H9JD11 (3HCDH_N domain-containing protein OS=Bombyx mori OX=7091 PE=4 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.032e-25 Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +K VTVIG GLMGSGIAQVSAQ+G V L+DV L KA I NL RVA K + D E EKFV+D L I +TD+ EA+K +DL+VEAI+E Sbjct: 5 IKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASKSADLVVEAIVE 100
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. TrEMBL
Match: A0A2P6KS96 (Hadh OS=Nephila clavipes OX=2585209 GN=NCL1_30163 PE=4 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.418e-24 Identity = 50/96 (52.08%), Postives = 72/96 (75.00%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +K VTVIG GLMGSGIAQV+AQ+G+ V L++V + LL+KA IK +L+RVA KKF DK E EKF+ + L ++ +T+ ++ K +DL++EAI+E Sbjct: 5 LKNVTVIGGGLMGSGIAQVAAQTGHNVTLVEVSEPLLNKATANIKKSLERVAKKKFNDKSQESEKFMKETLDRLKTTTNPADSVKDADLVIEAIVE 100
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. TrEMBL
Match: A0A2H1VFH8 (SFRICE_013294 OS=Spodoptera frugiperda OX=7108 GN=SFRICE_013294 PE=4 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 5.796e-24 Identity = 55/96 (57.29%), Postives = 69/96 (71.88%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +K VTVIG GLMGSGIAQVSAQ+G V L+DV +L K+ I NL RVA K + DK E EKFVS+ + I+ STD +EA+K +DL+VEAI+E Sbjct: 24 IKNVTVIGGGLMGSGIAQVSAQAGQNVILVDVSSDVLAKSQKSIGANLGRVAKKVYKDKPQEGEKFVSEAMARIKTSTDPSEASKSADLVVEAIVE 119
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. TrEMBL
Match: V4B5W7 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_203490 PE=4 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 1.029e-23 Identity = 52/96 (54.17%), Postives = 71/96 (73.96%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +K VTVIG GLMG+GIAQV+A +G+ V L+D Q +LDK+MG ++ +LQRVA KK+AD + E FV D L IQ TDS ++ K+DL++EAI+E Sbjct: 22 IKQVTVIGSGLMGAGIAQVAASTGHNVVLVDQNQDILDKSMGNLRKSLQRVAKKKYADDAAGGENFVKDVLGKIQTETDSAKSVLKADLVIEAIVE 117
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Cavefish
Match: hadh (hydroxyacyl-CoA dehydrogenase [Source:NCBI gene;Acc:103033308]) HSP 1 Score: 87.0409 bits (214), Expect = 1.001e-21 Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +K +TVIG GLMG+GIAQV+A +G+ V L+D+ + +L K+ I+ +L+RV KKFADK E+F+ + I STD+ +K+DL+VEAI+E Sbjct: 22 IKHITVIGGGLMGAGIAQVAATTGHSVVLVDMSEDILKKSAKSIEGSLKRVVKKKFADKPEAGEEFLQKAMKNISTSTDAAAVVQKTDLVVEAIVE 117
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Sea Lamprey
Match: hadh (hydroxyacyl-CoA dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-040801-261]) HSP 1 Score: 75.485 bits (184), Expect = 4.295e-18 Identity = 39/96 (40.62%), Postives = 61/96 (63.54%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 ++++ V+G G MG+GIAQV+A +G+KV ++D +L KAM I+ +L+RV K F D KF++D + I STD+ DL++EAI+E Sbjct: 29 IQSLCVVGSGQMGAGIAQVAATTGHKVVIVDQTDDILQKAMKGIESSLKRVVKKTFGDNTEAGAKFMADTMSNISTSTDAAAVVHSCDLVLEAIVE 124
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Sea Lamprey
Match: hadhab (hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha b [Source:ZFIN;Acc:ZDB-GENE-041111-204]) HSP 1 Score: 43.1282 bits (100), Expect = 1.597e-6 Identity = 34/98 (34.69%), Postives = 49/98 (50.00%), Query Frame = 1 Query: 4 KTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQ--EKFVSDGLLL-IQISTDSNEAAKKSDLIVEAIIE 288 KTV VIG GLMG+GIAQV+ G V L D L + +I K +DK+ ++ F D +L + D N K +D+++EA+ E Sbjct: 367 KTVAVIGAGLMGAGIAQVTIDKGVSVILKDTSMEGLGRGQQQI--------YKGLSDKVKKKTLSTFERDTVLSHLHPQLDLN-GFKTADMVIEAVFE 455
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Nematostella
Match: EDO46266 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RQC1]) HSP 1 Score: 73.559 bits (179), Expect = 3.696e-17 Identity = 37/96 (38.54%), Postives = 63/96 (65.62%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +K VTV G GLMG+GIAQV+A + + V ++D ++L K + I+ ++QR+A K+F D + + FV+ + ++IS D + +DL++EAI+E Sbjct: 43 IKNVTVFGGGLMGAGIAQVAAATDHNVTIVDQTNAILIKTLQSIERSMQRIAKKQFKDDVEAGKTFVAGTMSRLKISLDVPGSVADADLVIEAIVE 138
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Medaka
Match: hadh (hydroxyacyl-CoA dehydrogenase [Source:NCBI gene;Acc:101166688]) HSP 1 Score: 84.7297 bits (208), Expect = 6.646e-21 Identity = 43/96 (44.79%), Postives = 67/96 (69.79%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 +K VT+IG G MG+GIAQV+A +G+ V L+D + +L K+ I+ +L+RV KKFADK E+F+ + L + ISTD+ + + +DL++EAI+E Sbjct: 22 IKNVTIIGGGQMGAGIAQVAASTGHTVTLVDTSEDILKKSRKGIEGSLKRVVKKKFADKPEAGEEFIQNVLQNVSISTDAGASVQAADLLLEAIVE 117
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Planmine SMEST
Match: SMESG000032777.1 (SMESG000032777.1) HSP 1 Score: 169.474 bits (428), Expect = 8.458e-54 Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDL 267 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVA KKFADKISEQEKFVSD L LIQISTDSNEAAKKSDL Sbjct: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVATKKFADKISEQEKFVSDSLQLIQISTDSNEAAKKSDL 89
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Planmine SMEST
Match: SMESG000032777.1 (SMESG000032777.1) HSP 1 Score: 169.474 bits (428), Expect = 1.391e-53 Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 1 Query: 1 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDL 267 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVA KKFADKISEQEKFVSD L LIQISTDSNEAAKKSDL Sbjct: 21 MKTVTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVATKKFADKISEQEKFVSDSLQLIQISTDSNEAAKKSDL 109
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Planmine SMEST
Match: SMESG000061749.1 (SMESG000061749.1) HSP 1 Score: 44.2838 bits (103), Expect = 2.242e-6 Identity = 31/93 (33.33%), Postives = 50/93 (53.76%), Query Frame = 1 Query: 10 VTVIGCGLMGSGIAQVSAQSGYKVNLIDVEQSLLDKAMGKIKVNLQRVAVKKFADKISEQEKFVSDGLLLIQISTDSNEAAKKSDLIVEAIIE 288 V+++G GLMGSGI +VS L D+ L K +I+ NL +++VKK E ++ S + +TD E K +D+++EA+ E Sbjct: 358 VSILGAGLMGSGITEVSIDKNIPTALKDINLEALGKGQDRIQKNL-KISVKKKKYTTFEADQIYSK----LHSTTDYAE-LKNTDIVIEAVFE 444 The following BLAST results are available for this feature:
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30018385 ID=SMED30018385|Name=Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial|organism=Schmidtea mediterranea sexual|type=transcript|length=289bpback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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