SMED30018337

Overview
NameSMED30018337
Smed IDSMED30018337
Length (bp)3397
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30018337 (SMED30018337) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30018337 (SMED30018337) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30018337 (SMED30018337) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30018337 (SMED30018337) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30018337

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X2 cellSMED30018337 SmedASXL_071336SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30018337 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001735:22139..24951 -12579
Homology
[Close]
BLAST of SMED30018337 vs. Planmine SMEST
Match: SMESG000026858.1 (SMESG000026858.1)

HSP 1 Score: 372.474 bits (955), Expect = 9.739e-120
Identity = 206/280 (73.57%), Postives = 229/280 (81.79%), Query Frame = 2 
Query: 2066 MNSNSRSELNNLPRIPRLSPLVVALRQKXXXXXXXXXXXXTKYKRVKGTWTSPETAKGLHQKIVRLTRARDELITESRSQ*VLIKEQGTTLRQIFTDAELRASIPGSVWTRHLNIIPEEHLPMDTTNPTPSISAPRFTETPQVLLVE-----PLXXXXXXXXXXXXXXVEADLLREAELSNTQYRIDDLPPPYQEFEIPGFDPDVLYAPSVLFHSPARSTHIDLVEEESESPRIAQALDHLGLDLIEIAILTGNVPQISSPSEEAGSSTRIKVTYNINPP 2890
            MN+NSRS+LN LPRIP LSP VVALRQKLEELE +Y  L+ KY   KGTWTSPE AKGLHQKI+ L+RARDELITESRSQ VLI+EQ TTLRQ+FTDA+LR  IPGSVW RHLNIIPE+HLPMDT NPT S SAP+  E PQ+L+VE        R  R R  R  RR+EADLLRE E  +  YRIDDLPPPYQEF+IPG DPDVLYAPSVLFHSPARS HI+LV+EESESPR+ QALDHLGLDL EIA+LTG+VP+ S PSEEAG STRI+VTYN NPP
Sbjct:    1 MNTNSRSDLNYLPRIPLLSPSVVALRQKLEELEGKYEALKAKYDWAKGTWTSPEAAKGLHQKIIWLSRARDELITESRSQRVLIEEQSTTLRQLFTDAKLRTRIPGSVWGRHLNIIPEQHLPMDTINPTSSTSAPQIMEPPQILVVEPRPRVARRRPNRNRRRRKSRRIEADLLRETEPPSAPYRIDDLPPPYQEFKIPGLDPDVLYAPSVLFHSPARSIHINLVDEESESPRVNQALDHLGLDLGEIAVLTGSVPRTSPPSEEAGPSTRIEVTYNTNPP 280
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BLAST of SMED30018337 vs. Planmine SMEST
Match: SMESG000030584.1 (SMESG000030584.1)

HSP 1 Score: 311.612 bits (797), Expect = 1.270e-97
Identity = 185/287 (64.46%), Postives = 217/287 (75.61%), Query Frame = 2 
Query: 2084 SELNNLPRIPRLSPLVVALRQKXXXXXXXXXXXXTKYKRVKGTWTSPETAKGLHQKIVRLTRARDELITESRSQ*VLIKEQGTTLRQIFTDAELRASIPGSVWTRHLNIIPEEHLPMDTTNPTPSISAPRFTETPQVLLVEPLXXXX-----XXXXXXXXXXVEADLLREAELSNTQYRIDDLPPPYQEFEIPGFDPDVLYAPSVLFHSPARSTHIDLVEEESESPRIAQALDHLGLDLIEIAILTGNVPQISSPSEEAGSSTRIKVTYNINPPPYRPAKRRCLPTD 2929
            ++LNNLPRIPRLSP VVALRQ LEELE++Y+ LRTKY+R+KGTWTSP  AKGLHQKI+RL+RARDEL+TESRSQ VLIKEQ  TL QIFT+AELRA IPGSVW RHLNIIPEEHLP++T  PTPS S P+ TE+PQV +VEP    A     R R  R  RR+EADLLREAE S+ QYRIDDLPPPYQEFE+P FDPDVLYAP  LF SP+ S HIDLV+++ E P   QALD LGLD+ EIA+LT  V +    S E+G S R+        PP+ P+ +  +  D
Sbjct:    2 TDLNNLPRIPRLSPSVVALRQWLEELEDKYKTLRTKYERMKGTWTSPVDAKGLHQKIIRLSRARDELVTESRSQWVLIKEQSRTLHQIFTNAELRARIPGSVWARHLNIIPEEHLPIETAIPTPSTSTPQVTESPQVPVVEPRTGAARRRPNRNRRRRESRRIEADLLREAEPSSAQYRIDDLPPPYQEFEMPEFDPDVLYAPIALFPSPSCSFHIDLVDDDYEVPVANQALDQLGLDIGEIAVLTSVVTKDPYRSNESGPSNRVD-------PPHPPSSQASVLAD 281
[Close]
BLAST of SMED30018337 vs. Planmine SMEST
Match: SMESG000010758.1 (SMESG000010758.1)

HSP 1 Score: 303.523 bits (776), Expect = 5.350e-94
Identity = 177/284 (62.32%), Postives = 217/284 (76.41%), Query Frame = 2 
Query: 2105 RIPRLSPLVVALRQKXXXXXXXXXXXXTKYKRVKGTWTSPETAKGLHQKIVRLTRARDELITESRSQ*VLIKEQGTTLRQIFTDAELRASIPGSVWTRHLNIIPEEHLPMDTTNPTPSISAPRFTETPQVLLVEPLXXXXXXXXXXXXXX-----VEADLLREAELSNTQYRIDDLPPPYQEFEIPGFDPDVLYAPSVLFHSPARSTHIDLVEEESESPRIAQALDHLGLDLIEIAILTGNVPQISSPSEEAGSSTRIKVTYNINPPPYRPAKRRCLPTDIDAD 2941
            +IPRLSP ++A+ QKLE+L+  +   R KY R+KGTWTSPE  K ++QKI RL+RARDELITESRSQ VLIKEQ TTLRQ FTDAELRA +PGS+W R+LNIIPE+HLP+D   P PS  AP+  E  Q+ +VEP +  ARRRPNRNRRR     +EA+ LR  E ++  YRIDDL PPYQEFE P  DPDVLYAP+V FHSP RS HI+LV++ESE+P +  ALD LGL++ EIA L GN P+     +E G STR++++ N+NP PYRPAKR+CLPTDIDAD
Sbjct:   33 KIPRLSPSIIAICQKLEQLKRDHEAFRNKYHRLKGTWTSPEATKKMYQKITRLSRARDELITESRSQRVLIKEQSTTLRQKFTDAELRARVPGSIWARNLNIIPEKHLPLDVPRPAPSAPAPQSIEHSQIPVVEPHSGAARRRPNRNRRRRERRRMEANFLRTTEPASAPYRIDDLSPPYQEFEFPDLDPDVLYAPTVTFHSPPRSIHINLVDDESEAPALNNALDRLGLNVGEIAALMGNAPRSPPQIDEPGPSTRVELSINVNPHPYRPAKRQCLPTDIDAD 316
[Close]
BLAST of SMED30018337 vs. Planmine SMEST
Match: SMESG000034473.1 (SMESG000034473.1)

HSP 1 Score: 312.768 bits (800), Expect = 1.930e-91
Identity = 180/290 (62.07%), Postives = 211/290 (72.76%), Query Frame = 2 
Query: 2087 ELNNLPRIPRLSPLVVALRQKXXXXXXXXXXXXTKYKRVKGTWTSPETAKGLHQKIVRLTRARDELITESRSQ*VLIKEQGTTLRQIFTDAELRASIPGSVWTRHLNIIPEEHLPMDTTNPTPSISAPRFTETPQVLLVEP-----LXXXXXXXXXXXXXXVEADLLREAELSNTQYRIDDLPPPYQEFEIPGFDPDVLYAPSVLFHSPARSTHIDLVEEESESPRIAQALDHLGLDLIEIAILTGNVPQISSPSEEAGSSTRIKVTYNINPPPYRPAKRRCLPTDIDAD 2941
            E+ N+    +    ++ALRQKLEELE R+  L+ KY RVKGTWTSPE  K L+QKI  L+RARDELITESRSQ VLIKEQ T LRQIFTDAELRA IPGSVW RHLNIIPE+H P++  NPTPS SAP      Q+ + +P       R  R R  R RRR+EA+LLRE E S+  YRIDDL PPYQEF+IPG DPDVLYAPS  F+SPARS HI+LV++E+E   + QAL+ LGLD+ +IA+LT NV        E G STR +  +N NPPPYRPAKRRCLPTDIDAD
Sbjct:  540 EIKNVKERFKNDQRMIALRQKLEELEGRHEALKNKYNRVKGTWTSPEATKSLYQKISHLSRARDELITESRSQRVLIKEQSTMLRQIFTDAELRARIPGSVWARHLNIIPEQHFPLEAANPTPSTSAP------QIPIAKPRSGAARRRPNRNRRRRERRRMEAELLRETEPSSAPYRIDDLLPPYQEFKIPGLDPDVLYAPSATFYSPARSIHINLVDDENEVLAVNQALERLGLDIGKIAVLTSNVAGNPYRFNEPGPSTRTEPIHNANPPPYRPAKRRCLPTDIDAD 823
[Close]
BLAST of SMED30018337 vs. Planmine SMEST
Match: SMESG000034473.1 (SMESG000034473.1)

HSP 1 Score: 313.538 bits (802), Expect = 1.547e-89
Identity = 180/290 (62.07%), Postives = 211/290 (72.76%), Query Frame = 2 
Query: 2087 ELNNLPRIPRLSPLVVALRQKXXXXXXXXXXXXTKYKRVKGTWTSPETAKGLHQKIVRLTRARDELITESRSQ*VLIKEQGTTLRQIFTDAELRASIPGSVWTRHLNIIPEEHLPMDTTNPTPSISAPRFTETPQVLLVEP-----LXXXXXXXXXXXXXXVEADLLREAELSNTQYRIDDLPPPYQEFEIPGFDPDVLYAPSVLFHSPARSTHIDLVEEESESPRIAQALDHLGLDLIEIAILTGNVPQISSPSEEAGSSTRIKVTYNINPPPYRPAKRRCLPTDIDAD 2941
            E+ N+    +    ++ALRQKLEELE R+  L+ KY RVKGTWTSPE  K L+QKI  L+RARDELITESRSQ VLIKEQ T LRQIFTDAELRA IPGSVW RHLNIIPE+H P++  NPTPS SAP      Q+ + +P       R  R R  R RRR+EA+LLRE E S+  YRIDDL PPYQEF+IPG DPDVLYAPS  F+SPARS HI+LV++E+E   + QAL+ LGLD+ +IA+LT NV        E G STR +  +N NPPPYRPAKRRCLPTDIDAD
Sbjct:  848 EIKNVKERFKNDQRMIALRQKLEELEGRHEALKNKYNRVKGTWTSPEATKSLYQKISHLSRARDELITESRSQRVLIKEQSTMLRQIFTDAELRARIPGSVWARHLNIIPEQHFPLEAANPTPSTSAP------QIPIAKPRSGAARRRPNRNRRRRERRRMEAELLRETEPSSAPYRIDDLLPPYQEFKIPGLDPDVLYAPSATFYSPARSIHINLVDDENEVLAVNQALERLGLDIGKIAVLTSNVAGNPYRFNEPGPSTRTEPIHNANPPPYRPAKRRCLPTDIDAD 1131
The following BLAST results are available for this feature:
BLAST of SMED30018337 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018337 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018337 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018337 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018337 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018337 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018337 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018337 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018337 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018337 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018337 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018337 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018337 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018337 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000026858.19.739e-12073.57SMESG000026858.1[more]
SMESG000030584.11.270e-9764.46SMESG000030584.1[more]
SMESG000010758.15.350e-9462.32SMESG000010758.1[more]
SMESG000034473.11.930e-9162.07SMESG000034473.1[more]
SMESG000034473.11.547e-8962.07SMESG000034473.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30018337 ID=SMED30018337|Name=SMED30018337|organism=Schmidtea mediterranea sexual|type=transcript|length=3397bp
GGACCTCCACGCAGGGCATCGTTGTATAACTCGTAGCGGCTACTGAAAGT
GGCCGGGGCGAGTAGAATATAAAATTACGGGAAGGGCGTCTTCAGATAAG
GGAATTAGGATAGATCATATGATAATTTAAGTGAAAATTTTTGAAGCTCG
AATAAAATTGATAAACCTGACTAGGGAGAAGGGATAGACAGAGTCGACAA
GGCGTCGCAAATGGCTAACAGCATAGAAAATTGGATCAAATAGCTAAAAA
GTGTCAGCGATTTTTATTCCGCTCTATAACATAACTATGACCTCCAGGAA
GGATCATTAAAACTCTTCAGGAATTAGGTCTCAAGTCGCTATTCCAAACC
CAACATACGCTGCGAATTGTATTTGTATCAGTGATTCTCATTGAGATCTT
TCTTGTAAAAGTAAGCCCCTCATATGGAATAAAATTTTCCAAATCGACAT
CGAATAGACAAGAGGCACACCCGAAGGCTAAGTCCACGAGATTGAAATCG
ATCGCGGTTCGAATAGGCATTTTCTGCTACACTTTTGCTACCGATACGCC
GTCAATAGATAATCCACCCTAAATCATAAAAACTCACCGACATTCAGGTA
TCTACCGCGTTTTCGTGAGAGGTAGGGTAGATAATTCATTTCACTAATTA
TGACGTCACTCCTCCCAAAGCCACTAGACAGAGATATATTCCGCTACAAT
TAAGACCCATTATCGTAGAAAATCAATACTCTACTACAGACATCATATAT
ATTGAATAAGCACCGCCGAGCTAGCCGACTAGTGTAACTGCACCGATAAT
GGATATGGAAATTCATGACATCATCCGACACGTAATTATACACCCCACTA
TGCTAACACTGACGCACACGCGTTCGAACATCACTAGATTTCTCGCATTG
GTGTCACTGGATTAAATGTTGTTAAAATTCTCCAGCGTAAATACGAACTA
TCACTCTCATCTATCTACGTTAGTTAACCCAGTTATTACGATTAGGTATT
AGGAAGGGCATTAGCGCACCATAGTTACTTATCATCGCTGATACGGTCAT
CACCATCAGCTTCATTACGATTGTTGCCTTGGAAAATTTCTAATATCATT
AATGTTATTCTTAATTTCGCCAGCACCATTATTACTTACGTAACAATTAT
GATTAACATAATTAATATTGTTACTGATAGTTTATTTATTAATATTTCCA
TAACGTAATTATTATCATCATAAATACGAACATTACTATCAGTAATCCCA
TCGTTATTTATTATTCTCACTAATATAGGTATTAACATTAATGCTACTCA
TATTACTATCATTATAATTATTACTAATATTAACATTAATACTACTCATA
TTATTATCCTTATAATTATTACTAATCTTGACATTAATGTCGTCTCCCTC
ACCAATCTTACTGACACCATTATTGTAGTGATTTCCAATATTAACTAAAT
GGATGTATCAATTCTACCAGTACCATCAGTGCCCATAGTAATACCATTAC
GGATTAAACGTCGCAGTGAATACTCGCAACGTTAAAATACCCAAACTCCC
TAAGTAATTACTAAGGACCGTATGGATACTACTAACAGTACCCAATCTGC
ATACTCACTAGTTCAATCAAATCAAACCTTAGAAATTCTCTGGACAATTA
ATATAGACACCACAGCTTATTTAACGTTGGAAATACTTTTAATTCCCAAT
ATAGGGACTTCACTTTCGTTAGTAGCATAGTTAACGTAGATGGTCCATTT
TGATAGCCCTAGAAGCTCTCTTGATGGATTGCACAGGCATCAAAACCCCT
TTTGATATCAACCCGGGTTAGCATCGGTTGAGCTGTGAGGATAACGCCCT
TTGATATACTCCCTTACATGATACTCAGTTTGCCAAGGTTTCATCGGCAC
TCTGTAGAAGACCCTCGTTAACTTGGAAAATAACCATTCTCGAGACCCCC
ACTTCCAAGATTTCCCCTCGTTGTCTATCATCGGGTTCATAGCTAGCTGA
ATATTTTCCTCACCCTATTCCTAATAGTTCCCAATTCCTAATCTCCTCCT
GTAGACGTTCTAGAGATGAATTCCAACTCCAGATCTGAACTGAATAATCT
TCCCAGGATTCCGCGACTTTCTCCATTAGTAGTCGCGCTTCGACAGAAGT
TGGAGGAGTTAGAAGAAAGATATAGAATCCTCAGAACCAAGTACAAGAGG
GTGAAAGGTACTTGGACCTCCCCCGAAACCGCCAAAGGTTTACACCAAAA
AATTGTCCGGCTGACCCGAGCTCGAGACGAATTGATTACGGAGTCTCGCA
GCCAGTGAGTTTTGATTAAGGAGCAGGGTACGACGCTCCGCCAAATATTC
ACGGATGCCGAGCTTCGAGCCAGCATCCCCGGAAGTGTCTGGACCCGCCA
CCTAAACATCATACCCGAAGAGCACCTGCCAATGGATACAACCAACCCAA
CCCCTTCAATCTCAGCTCCTCGATTTACTGAAACGCCTCAAGTTCTCTTA
GTCGAACCCCTTGCCAGAACGGCCCGTCGGCGGCCCAACCGAAATCGTCG
CCGTGTAGAAGCTGATCTCCTCCGAGAAGCGGAGCTATCTAACACACAGT
ATCGGATCGATGATCTCCCGCCTCCCTACCAGGAATTTGAAATTCCGGGG
TTCGATCCTGACGTGCTCTACGCACCTTCAGTTCTCTTCCACTCCCCAGC
TCGGTCGACCCACATCGATCTAGTGGAGGAGGAATCTGAGTCTCCGAGAA
TTGCCCAGGCTCTGGATCACCTAGGGCTGGATCTTATCGAGATCGCAATA
CTCACGGGTAATGTGCCCCAAATTTCTTCCCCATCCGAAGAAGCTGGATC
TTCTACACGCATCAAGGTCACCTACAACATAAACCCTCCTCCGTATCGGC
CGGCAAAACGTAGATGCCTTCCTACAGATATCGATGCCGACGAGTAGGAC
CAGTGTAAATCGATTATCTCTCCCTTCCGAAAACCATGGAGAGGCTGATT
TTCAGTGTGACTAGGTTCTAGTTTGACCTTGTTCAAGAGACCTTGTAAAG
AACTGTCATGTGTACATCTGATTGTCCCTCTAGCTGTTGTATTATTATTG
TCGTAGTGTCAATATAACAATATAATGATATAGTCTTACCTTGCTTTAGT
TAGAATTATGTATTTTTAGATTGAAAGAGAGTAAAATAACAGTCACAGTT
AGTGATGTTTCATTGAACGATTGTTAATGAGGGAGTCGAACGATGTGAGT
GAACTCCCACGATTTCTCAACTCAGCTAGGACGAACAGGAAGCGATCATA
GGTAGAATAGTTGTATATGATGCGTAAGTCCTTCTATCGGCAGCAATAAC
CGGGAAAGCGAAGGTCCTTCGAGGAGTAGTGTTAGCAATAGCGCTCA
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protein sequence of SMED30018337-orf-1

>SMED30018337-orf-1 ID=SMED30018337-orf-1|Name=SMED30018337-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=172bp
MDTTNPTPSISAPRFTETPQVLLVEPLARTARRRPNRNRRRVEADLLREA
ELSNTQYRIDDLPPPYQEFEIPGFDPDVLYAPSVLFHSPARSTHIDLVEE
ESESPRIAQALDHLGLDLIEIAILTGNVPQISSPSEEAGSSTRIKVTYNI
NPPPYRPAKRRCLPTDIDADE*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002111X2 cell