V-SNARE coiled-coil homology domain-containing protein

Overview


Name	V-SNARE coiled-coil homology domain-containing protein
Smed ID	SMED30018272
Length (bp)	718

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of V-SNARE coiled-coil homology domain-containing protein (SMED30018272) t-SNE clustered cells

Violin plots show distribution of expression levels for V-SNARE coiled-coil homology domain-containing protein (SMED30018272) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of V-SNARE coiled-coil homology domain-containing protein (SMED30018272) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30018272

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 9

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
nervous system	SMED30018272	h1SMcG0004656	dd_Smed_v4_9710_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30018272	h1SMcG0004656	dd_Smed_v4_9710_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
non-ciliated neuron	SMED30018272	h1SMcG0004656	dd_Smed_v4_9710_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018272	h1SMcG0004656	Contig55312	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018272	h1SMcG0004656	Contig4832	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018272	h1SMcG0004656	Contig4832	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018272	h1SMcG0014223	Contig4832	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018272	h1SMcG0014223	Contig4832	newmark_ests	PMID:29674431 Fincher et al., 2018
head region	SMED30018272	h1SMcG0004656	dd_Smed_v6_9710_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Human
Match: VAMP1 (vesicle associated membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:12642])

HSP 1 Score: 133.265 bits (334), Expect = 3.052e-39
Identity = 60/76 (78.95%), Postives = 71/76 (93.42%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSGVFA 336
            N+RLQQTQAQV+EVVDI+RVNVDKVLERD KLSELD+RADALQAGASQFE+SA KLKRK+WW+NCKMM+++  + A
Sbjct:   31 NRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICA 106

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Human
Match: VAMP2 (vesicle associated membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:12643])

HSP 1 Score: 131.339 bits (329), Expect = 1.642e-38
Identity = 61/71 (85.92%), Postives = 67/71 (94.37%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIM 321
            N+RLQQTQAQVDEVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE SA KLKRK+WW+N KMM+I+
Sbjct:   29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIIL 99

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Human
Match: VAMP1 (vesicle associated membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:12642])

HSP 1 Score: 131.339 bits (329), Expect = 1.806e-38
Identity = 59/71 (83.10%), Postives = 69/71 (97.18%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIM 321
            N+RLQQTQAQV+EVVDI+RVNVDKVLERD KLSELD+RADALQAGASQFE+SA KLKRK+WW+NCKMM+++
Sbjct:   31 NRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIML 101

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Human
Match: VAMP2 (vesicle associated membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:12643])

HSP 1 Score: 131.339 bits (329), Expect = 1.923e-38
Identity = 61/71 (85.92%), Postives = 67/71 (94.37%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIM 321
            N+RLQQTQAQVDEVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE SA KLKRK+WW+N KMM+I+
Sbjct:   31 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIIL 101

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Human
Match: VAMP2 (vesicle associated membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:12643])

HSP 1 Score: 130.954 bits (328), Expect = 2.469e-38
Identity = 61/72 (84.72%), Postives = 67/72 (93.06%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMS 324
            N+RLQQTQAQVDEVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE SA KLKRK+WW+N KMM+I+ 
Sbjct:   29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILG 100

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Celegans
Match: snb-1 (Synaptobrevin-1 [Source:UniProtKB/Swiss-Prot;Acc:O02495])

HSP 1 Score: 119.783 bits (299), Expect = 1.618e-34
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIM 321
            NKRLQQTQAQVDEVV IM+VNV+KVLERD KLS+LD+RADALQ GASQFE SA  LKRK+WW+N KMM+IM
Sbjct:   21 NKRLQQTQAQVDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQFEKSAATLKRKYWWKNIKMMIIM 91

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Celegans
Match: snb-2 (SyNaptoBrevin related [Source:UniProtKB/TrEMBL;Acc:Q19767])

HSP 1 Score: 92.8189 bits (229), Expect = 5.753e-24
Identity = 40/71 (56.34%), Postives = 59/71 (83.10%), Query Frame = 1

Query:  112 KRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMS 324
            KR+Q  QAQV+EV+D+MR NV+KV+ERD +L+ LD+RA+ LQ GASQF+ S+  L++K+WW+N +MM+I+ 
Sbjct:   28 KRMQMAQAQVNEVIDVMRNNVNKVMERDVQLNSLDHRAEVLQNGASQFQQSSRTLRQKYWWQNIRMMIIIG 98

[Close]

Query:  112 KRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMS 324
            KR+Q  QAQV+EV+D+MR NV+KV+ERD +L+ LD+RA+ LQ GASQF+ S+  L++K+WW+N +MM+I+ 
Sbjct:   28 KRMQMAQAQVNEVIDVMRNNVNKVMERDVQLNSLDHRAEVLQNGASQFQQSSRTLRQKYWWQNIRMMIIIG 98

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Celegans
Match: vamp-7 (VAMP (Vesicle Associated Membrane Protein) homolog [Source:UniProtKB/TrEMBL;Acc:Q95XH1])

HSP 1 Score: 54.299 bits (129), Expect = 1.410e-8
Identity = 24/70 (34.29%), Postives = 47/70 (67.14%), Query Frame = 1

Query:  112 KRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIM 321
            +R+   + QVD+V  +M  NV++++ER  +L  ++NR +AL+  A+ F+++A +++R F  +N K  LI+
Sbjct:  170 QRMIDIRRQVDDVRQVMADNVERIMERGERLENMENRTEALRTSATSFKSTARRVQRHFCQKNLKWTLIL 239

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Celegans
Match: vamp-8 (VAMP (Vesicle Associated Membrane Protein) homolog [Source:UniProtKB/TrEMBL;Acc:Q95QZ1])

HSP 1 Score: 49.2914 bits (116), Expect = 9.804e-8
Identity = 25/71 (35.21%), Postives = 46/71 (64.79%), Query Frame = 1

Query:  112 KRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMS 324
            +++Q  + QVD V  +M  NV+++LER  +L  ++ R++ L A ++ F+ +A K++RKF   N K  +I+S
Sbjct:   16 EKMQNLRNQVDSVKAVMVDNVERILERGERLDNIERRSEQLNATSANFKFTARKVQRKFCMLNAKWTVILS 86

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Fly
Match: nSyb (gene:FBgn0013342 transcript:FBtr0331461)

HSP 1 Score: 125.561 bits (314), Expect = 2.023e-35
Identity = 61/75 (81.33%), Postives = 65/75 (86.67%), Query Frame = 1

Query:  112 KRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSGVFA 336
            KRLQQTQAQVDEVVDIMR NV+KVLERD KLSELD+RADALQ GASQFE  AGKLKRKFW +N KMM+IM GV  
Sbjct:   40 KRLQQTQAQVDEVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQAGKLKRKFWLQNLKMMIIM-GVIG 113

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Fly
Match: nSyb (gene:FBgn0013342 transcript:FBtr0331462)

HSP 1 Score: 122.865 bits (307), Expect = 2.368e-35
Identity = 59/71 (83.10%), Postives = 63/71 (88.73%), Query Frame = 1

Query:  112 KRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMS 324
            KRLQQTQAQVDEVVDIMR NV+KVLERD KLSELD+RADALQ GASQFE  AGKLKRKFW +N KMM+IM 
Sbjct:   40 KRLQQTQAQVDEVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQAGKLKRKFWLQNLKMMIIMG 110

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Fly
Match: nSyb (gene:FBgn0013342 transcript:FBtr0306578)

HSP 1 Score: 123.25 bits (308), Expect = 2.379e-35
Identity = 59/71 (83.10%), Postives = 63/71 (88.73%), Query Frame = 1

Query:  112 KRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMS 324
            KRLQQTQAQVDEVVDIMR NV+KVLERD KLSELD+RADALQ GASQFE  AGKLKRKFW +N KMM+IM 
Sbjct:   49 KRLQQTQAQVDEVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQAGKLKRKFWLQNLKMMIIMG 119

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Fly
Match: nSyb (gene:FBgn0013342 transcript:FBtr0302310)

HSP 1 Score: 123.25 bits (308), Expect = 2.379e-35
Identity = 59/71 (83.10%), Postives = 63/71 (88.73%), Query Frame = 1

Query:  112 KRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMS 324
            KRLQQTQAQVDEVVDIMR NV+KVLERD KLSELD+RADALQ GASQFE  AGKLKRKFW +N KMM+IM 
Sbjct:   49 KRLQQTQAQVDEVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQAGKLKRKFWLQNLKMMIIMG 119

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Fly
Match: nSyb (gene:FBgn0013342 transcript:FBtr0072815)

HSP 1 Score: 124.02 bits (310), Expect = 4.744e-35
Identity = 59/71 (83.10%), Postives = 63/71 (88.73%), Query Frame = 1

Query:  112 KRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMS 324
            KRLQQTQAQVDEVVDIMR NV+KVLERD KLSELD+RADALQ GASQFE  AGKLKRKFW +N KMM+IM 
Sbjct:   40 KRLQQTQAQVDEVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQAGKLKRKFWLQNLKMMIIMG 110

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Zebrafish
Match: zgc:92912 (zgc:92912 [Source:ZFIN;Acc:ZDB-GENE-040718-265])

HSP 1 Score: 130.568 bits (327), Expect = 2.171e-38
Identity = 60/72 (83.33%), Postives = 67/72 (93.06%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMS 324
            N+RLQQTQAQV+EVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE+ A KLK K+WW+NCKMM+IM 
Sbjct:   31 NRRLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESCAAKLKNKYWWKNCKMMIIMG 102

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Zebrafish
Match: vamp2 (vesicle-associated membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8225])

HSP 1 Score: 129.413 bits (324), Expect = 5.037e-38
Identity = 60/72 (83.33%), Postives = 66/72 (91.67%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMS 324
            N+RLQQTQAQVDEVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE SA KLK K+WW+N KMM+I+ 
Sbjct:   23 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKNKYWWKNAKMMIILG 94

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Zebrafish
Match: vamp3 (vesicle-associated membrane protein 3 (cellubrevin) [Source:ZFIN;Acc:ZDB-GENE-040625-45])

HSP 1 Score: 126.331 bits (316), Expect = 7.943e-37
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKM 309
            N+RLQQTQAQVDEVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE SA KLKRKFWW+N KM
Sbjct:   15 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKFWWKNVKM 81

[Close]

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKM 309
            N+RLQQTQAQVDEVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE SA KLKRKFWW+N KM
Sbjct:   15 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKFWWKNVKM 81

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Zebrafish
Match: vamp3 (vesicle-associated membrane protein 3 (cellubrevin) [Source:ZFIN;Acc:ZDB-GENE-040625-45])

HSP 1 Score: 124.79 bits (312), Expect = 2.997e-36
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKM 309
            N+RLQQTQAQVDEVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE SA KLKRKFWW+N KM
Sbjct:   15 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKFWWKNVKM 81

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Xenopus
Match: idh1 (isocitrate dehydrogenase 1 (NADP+) [Source:Xenbase;Acc:XB-GENE-1004994])

HSP 1 Score: 130.183 bits (326), Expect = 3.669e-38
Identity = 61/76 (80.26%), Postives = 69/76 (90.79%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSGVFA 336
            N+RL QTQAQV+EVVDIMRVNVDKVL+RD KL+ELD+RADALQAGASQFE SA KLKRK+WWRNCKMM+IM  + A
Sbjct:   23 NRRLLQTQAQVNEVVDIMRVNVDKVLDRDQKLAELDDRADALQAGASQFETSAAKLKRKYWWRNCKMMIIMGVLCA 98

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Xenopus
Match: vamp3 (vesicle associated membrane protein 3 [Source:NCBI gene;Acc:549726])

HSP 1 Score: 126.331 bits (316), Expect = 9.141e-37
Identity = 59/67 (88.06%), Postives = 64/67 (95.52%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKM 309
            N+RLQQTQAQV+EVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE SA KLKRK+WW+NCKM
Sbjct:   14 NRRLQQTQAQVNEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKM 80

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Xenopus
Match: vamp3 (vesicle associated membrane protein 3 [Source:NCBI gene;Acc:549726])

HSP 1 Score: 126.331 bits (316), Expect = 1.806e-36
Identity = 59/67 (88.06%), Postives = 64/67 (95.52%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKM 309
            N+RLQQTQAQV+EVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE SA KLKRK+WW+NCKM
Sbjct:   14 NRRLQQTQAQVNEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKM 80

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Xenopus
Match: vamp4 (vesicle associated membrane protein 4 [Source:NCBI gene;Acc:549651])

HSP 1 Score: 73.559 bits (179), Expect = 5.169e-16
Identity = 30/76 (39.47%), Postives = 53/76 (69.74%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSGVFA 336
            N +++  Q QVDEV+D+M+ N+ +V+ER  +L EL +++++L   A+ F + + +L+R+ WWR CKM  I++ VF 
Sbjct:   50 NDKIRHVQNQVDEVIDVMQENITRVIERGERLDELQDKSESLSDNATAFSSRSRQLRRQMWWRECKMKAIIALVFV 125

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Xenopus
Match: vamp4 (vesicle associated membrane protein 4 [Source:NCBI gene;Acc:549651])

HSP 1 Score: 70.4774 bits (171), Expect = 7.337e-15
Identity = 28/72 (38.89%), Postives = 51/72 (70.83%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMS 324
            N +++  Q QVDEV+D+M+ N+ +V+ER  +L EL +++++L   A+ F + + +L+R+ WWR CKM  I++
Sbjct:   50 NDKIRHVQNQVDEVIDVMQENITRVIERGERLDELQDKSESLSDNATAFSSRSRQLRRQMWWRECKMKAIIA 121

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Mouse
Match: Vamp1 (vesicle-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:1313276])

HSP 1 Score: 135.191 bits (339), Expect = 4.600e-40
Identity = 61/76 (80.26%), Postives = 71/76 (93.42%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSGVFA 336
            N+RLQQTQAQV+EVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE+SA KLKRK+WW+NCKMM+++  + A
Sbjct:   31 NRRLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICA 106

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Mouse
Match: Vamp1 (vesicle-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:1313276])

HSP 1 Score: 132.88 bits (333), Expect = 3.346e-39
Identity = 60/71 (84.51%), Postives = 69/71 (97.18%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIM 321
            N+RLQQTQAQV+EVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE+SA KLKRK+WW+NCKMM+++
Sbjct:   31 NRRLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIML 101

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Mouse
Match: Vamp1 (vesicle-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:1313276])

HSP 1 Score: 132.494 bits (332), Expect = 4.349e-39
Identity = 60/72 (83.33%), Postives = 69/72 (95.83%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMS 324
            N+RLQQTQAQV+EVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE+SA KLKRK+WW+NCKMM+++ 
Sbjct:   31 NRRLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLG 102

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Mouse
Match: Vamp2 (vesicle-associated membrane protein 2 [Source:MGI Symbol;Acc:MGI:1313277])

HSP 1 Score: 131.339 bits (329), Expect = 1.128e-38
Identity = 61/71 (85.92%), Postives = 67/71 (94.37%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIM 321
            N+RLQQTQAQVDEVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE SA KLKRK+WW+N KMM+I+
Sbjct:   29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIIL 99

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Mouse
Match: Vamp1 (vesicle-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:1313276])

HSP 1 Score: 131.724 bits (330), Expect = 4.975e-38
Identity = 60/72 (83.33%), Postives = 69/72 (95.83%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMS 324
            N+RLQQTQAQV+EVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE+SA KLKRK+WW+NCKMM+++ 
Sbjct:   31 NRRLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLG 102

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. UniProt/SwissProt
Match: sp|P47194|SYB_DORPE (Synaptobrevin OS=Doryteuthis pealeii OX=1051067 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.830e-40
Identity = 64/73 (87.67%), Postives = 71/73 (97.26%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSG 327
            +KRLQQTQAQV+EVVDIMRVNVDKVLERD K+SELD+RADALQAGASQFEASAGKLKRKFWW+NCKMM+I+ G
Sbjct:   38 SKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWWKNCKMMIILGG 110

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. UniProt/SwissProt
Match: sp|Q62442|VAMP1_MOUSE (Vesicle-associated membrane protein 1 OS=Mus musculus OX=10090 GN=Vamp1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.218e-39
Identity = 61/76 (80.26%), Postives = 71/76 (93.42%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSGVFA 336
            N+RLQQTQAQV+EVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE+SA KLKRK+WW+NCKMM+++  + A
Sbjct:   31 NRRLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICA 106

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. UniProt/SwissProt
Match: sp|Q0V7N0|VAMP1_BOVIN (Vesicle-associated membrane protein 1 OS=Bos taurus OX=9913 GN=VAMP1 PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.868e-39
Identity = 61/76 (80.26%), Postives = 71/76 (93.42%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSGVFA 336
            N+RLQQTQAQV+EVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE+SA KLKRK+WW+NCKMM+++  + A
Sbjct:   31 NRRLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICA 106

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. UniProt/SwissProt
Match: sp|P23763|VAMP1_HUMAN (Vesicle-associated membrane protein 1 OS=Homo sapiens OX=9606 GN=VAMP1 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.466e-38
Identity = 60/76 (78.95%), Postives = 71/76 (93.42%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSGVFA 336
            N+RLQQTQAQV+EVVDI+RVNVDKVLERD KLSELD+RADALQAGASQFE+SA KLKRK+WW+NCKMM+++  + A
Sbjct:   31 NRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICA 106

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. UniProt/SwissProt
Match: sp|P13701|SYB_TETCF (Synaptobrevin OS=Tetronarce californica OX=7787 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.856e-38
Identity = 59/71 (83.10%), Postives = 69/71 (97.18%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIM 321
            N+RLQQTQAQV+EVVDI+RVNVDKVLERD KLSELD+RADALQAGASQFE+SA KLKRK+WW+NCKMM+++
Sbjct:   33 NRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIML 103

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. TrEMBL
Match: A0A2I0LW24 (Vesicle-associated membrane protein 2 OS=Columba livia OX=8932 GN=A306_00012569 PE=4 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.117e-38
Identity = 65/76 (85.53%), Postives = 70/76 (92.11%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSGVFA 336
            NKRLQQTQAQVDEVVDIMR+NVDKVLERD KLSELDNRADALQAGASQFE SA KLKRK+WW+NCKMM+I+  V A
Sbjct:   27 NKRLQQTQAQVDEVVDIMRMNVDKVLERDQKLSELDNRADALQAGASQFETSAAKLKRKYWWKNCKMMIILGVVCA 102

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. TrEMBL
Match: M7B855 (Vesicle-associated membrane protein 1 (Fragment) OS=Chelonia mydas OX=8469 GN=UY3_09534 PE=4 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.210e-38
Identity = 65/76 (85.53%), Postives = 70/76 (92.11%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSGVFA 336
            N+RLQQTQAQVDEVVDIMRVNVDKVLERD KLSELDNRADALQAGASQFE SA KLKRK+WW+NCKMM+I+  V A
Sbjct:   30 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDNRADALQAGASQFETSAAKLKRKYWWKNCKMMIILGVVCA 105

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. TrEMBL
Match: U3JN91 (V-SNARE coiled-coil homology domain-containing protein OS=Ficedula albicollis OX=59894 PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.072e-38
Identity = 65/76 (85.53%), Postives = 70/76 (92.11%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSGVFA 336
            NKRLQQTQAQVDEVVDIMR+NVDKVLERD KLSELDNRADALQAGASQFE SA KLKRK+WW+NCKMM+I+  V A
Sbjct:   27 NKRLQQTQAQVDEVVDIMRMNVDKVLERDQKLSELDNRADALQAGASQFETSAAKLKRKYWWKNCKMMIILGVVCA 102

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. TrEMBL
Match: A0A452H4N4 (V-SNARE coiled-coil homology domain-containing protein OS=Gopherus agassizii OX=38772 PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.152e-38
Identity = 65/76 (85.53%), Postives = 70/76 (92.11%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSGVFA 336
            N+RLQQTQAQVDEVVDIMRVNVDKVLERD KLSELDNRADALQAGASQFE SA KLKRK+WW+NCKMM+I+  V A
Sbjct:   30 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDNRADALQAGASQFETSAAKLKRKYWWKNCKMMIILGVVCA 105

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. TrEMBL
Match: H0Z4K7 (V-SNARE coiled-coil homology domain-containing protein OS=Taeniopygia guttata OX=59729 PE=4 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.479e-38
Identity = 65/76 (85.53%), Postives = 70/76 (92.11%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSGVFA 336
            NKRLQQTQAQVDEVVDIMR+NVDKVLERD KLSELDNRADALQAGASQFE SA KLKRK+WW+NCKMM+I+  V A
Sbjct:   15 NKRLQQTQAQVDEVVDIMRMNVDKVLERDQKLSELDNRADALQAGASQFETSAAKLKRKYWWKNCKMMIILGVVCA 90

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Cavefish
Match: vamp1 (vesicle-associated membrane protein 2-like [Source:NCBI gene;Acc:103030083])

HSP 1 Score: 134.42 bits (337), Expect = 6.597e-40
Identity = 61/72 (84.72%), Postives = 68/72 (94.44%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMS 324
            N+RLQQTQAQVDEVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE+SA KLK K+WW+NCKMM++M 
Sbjct:   33 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKNKYWWKNCKMMIMMG 104

[Close]

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMS 324
            N+RLQQTQAQVDEVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE+SA KLK K+WW+NCKMM++M 
Sbjct:   33 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKNKYWWKNCKMMIMMG 104

[Close]

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMS 324
            N+RLQQTQAQVDEVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE+SA KLK K+WW+NCKMM++M 
Sbjct:   33 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKNKYWWKNCKMMIMMG 104

[Close]

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMS 324
            N+RLQQTQAQVDEVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE+SA KLK K+WW+NCKMM++M 
Sbjct:   33 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKNKYWWKNCKMMIMMG 104

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Cavefish
Match: zgc:92912 (zgc:92912 [Source:ZFIN;Acc:ZDB-GENE-040718-265])

HSP 1 Score: 129.413 bits (324), Expect = 6.863e-38
Identity = 59/71 (83.10%), Postives = 67/71 (94.37%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIM 321
            N+RLQQTQAQV+EVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE+ A KLK K+WW+NCKMM++M
Sbjct:   38 NRRLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESCAAKLKNKYWWKNCKMMIMM 108

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008529.1 (pep scaffold:Pmarinus_7.0:GL484641:5659:9131:-1 gene:ENSPMAG00000007726.1 transcript:ENSPMAT00000008529.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 134.42 bits (337), Expect = 1.362e-40
Identity = 62/76 (81.58%), Postives = 70/76 (92.11%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSGVFA 336
            N+RLQQTQAQVDEVVDIMRVNVDKVLERD KLSELD+RADALQ GASQFE+SA KLKRK+WW+NCKMM+I+  + A
Sbjct:   30 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQQGASQFESSAAKLKRKYWWKNCKMMIILGVICA 105

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Yeast
Match: SNC1 (Vesicle membrane receptor protein (v-SNARE); involved in the fusion between Golgi-derived secretory vesicles with the plasma membrane; proposed to be involved in endocytosis; member of the synaptobrevin/VAMP family of R-type v-SNARE proteins; SNC1 has a paralog, SNC2, that arose from the whole genome duplication [Source:SGD;Acc:S000000028])

HSP 1 Score: 55.8398 bits (133), Expect = 1.001e-10
Identity = 23/67 (34.33%), Postives = 44/67 (65.67%), Query Frame = 1

Query:  115 RLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMML 315
            R  + QA++D+ V IMR N++KV ER  +L+ ++++AD L   A  F+  A ++++  W+++ KM +
Sbjct:   28 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMWYKDLKMKM 94

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Yeast
Match: SNC2 (Vesicle membrane receptor protein (v-SNARE); involved in the fusion between Golgi-derived secretory vesicles with the plasma membrane; Snc2p levels regulated by Vps45p; member of the synaptobrevin/VAMP family of R-type v-SNARE proteins; SNC2 has a paralog, SNC1, that arose from the whole genome duplication [Source:SGD;Acc:S000005854])

HSP 1 Score: 55.4546 bits (132), Expect = 1.311e-10
Identity = 21/62 (33.87%), Postives = 42/62 (67.74%), Query Frame = 1

Query:  136 QVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIM 321
            ++D+ V IMR N++KV ER  +L+ ++++AD L   A  F+  A +++++ WW++ KM + +
Sbjct:   34 EIDDTVGIMRDNINKVAERGERLTSIEDKADNLAISAQGFKRGANRVRKQMWWKDLKMRMCL 95

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Yeast
Match: NYV1 (v-SNARE component of the vacuolar SNARE complex; involved in vesicle fusion; inhibits ATP-dependent Ca(2+) transport activity of Pmc1p in the vacuolar membrane [Source:SGD;Acc:S000004083])

HSP 1 Score: 46.2098 bits (108), Expect = 1.316e-6
Identity = 20/66 (30.30%), Postives = 39/66 (59.09%), Query Frame = 1

Query:  127 TQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMS 324
            T+ Q+ +V+ IM  N+DK LER  ++S L ++   L + +++F   A  +K   WW+  K + +++
Sbjct:  171 TEDQIKDVIQIMNDNIDKFLERQERVSLLVDKTSQLNSSSNKFRRKAVNIKEIMWWQKVKNITLLT 236

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Nematostella
Match: EDO42383 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S1M0])

HSP 1 Score: 126.716 bits (317), Expect = 6.274e-38
Identity = 59/71 (83.10%), Postives = 67/71 (94.37%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIM 321
            +KRLQQTQAQVDEVVDIM+VNVDKVLERD KLSELDNRADALQAGASQFE SA +LKRK WW+NCK++L++
Sbjct:    3 SKRLQQTQAQVDEVVDIMKVNVDKVLERDAKLSELDNRADALQAGASQFETSASRLKRKMWWQNCKVILVL 73

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Nematostella
Match: EDO44396 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RVJ7])

HSP 1 Score: 59.3066 bits (142), Expect = 2.197e-11
Identity = 24/64 (37.50%), Postives = 44/64 (68.75%), Query Frame = 1

Query:  118 LQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKM 309
            + + + ++  VVD+M+ N+ KVL+R  KL +L ++++ L   A QF + + KL+RK WW+NC++
Sbjct:   53 ISRVKNEIKGVVDVMQTNIAKVLDRGAKLDDLQDKSENLDMNAFQFRSGSRKLQRKLWWQNCRL 116

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Nematostella
Match: EDO43738 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RXX6])

HSP 1 Score: 56.6102 bits (135), Expect = 7.927e-10
Identity = 24/64 (37.50%), Postives = 42/64 (65.62%), Query Frame = 1

Query:  118 LQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKM 309
            + + Q +VDEV D+M  N++KVLER  ++  L ++A+ L   A  F+  + +L++K WW+N +M
Sbjct:  129 INKVQREVDEVKDVMTKNIEKVLERGERIDILMDKAETLDNSAQTFQRHSSRLRKKMWWQNTRM 192

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Nematostella
Match: EDO39013 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SBE8])

HSP 1 Score: 49.2914 bits (116), Expect = 3.010e-7
Identity = 21/71 (29.58%), Postives = 41/71 (57.75%), Query Frame = 1

Query:  118 LQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSGV 330
            + + Q ++DE+  IM  N+D +  R  +L  L ++A+ L + +  F+ ++  L R  WW+N K+ LI+  +
Sbjct:  127 IAKVQVELDEIRGIMVKNIDSIASRGERLELLIDKAEDLNSSSLTFKKTSRGLARAMWWKNVKITLILIAI 197

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Medaka
Match: vamp1 (vesicle-associated membrane protein 2-like [Source:NCBI gene;Acc:101164413])

HSP 1 Score: 135.961 bits (341), Expect = 5.175e-40
Identity = 62/74 (83.78%), Postives = 69/74 (93.24%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSGV 330
            N+RLQQTQAQVDEVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE+SA KLK K+WW+NCKMM+IM  +
Sbjct:   32 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKNKYWWKNCKMMIIMGVI 105

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Medaka
Match: vamp1 (vesicle-associated membrane protein 2-like [Source:NCBI gene;Acc:101164413])

HSP 1 Score: 134.035 bits (336), Expect = 1.058e-39
Identity = 62/74 (83.78%), Postives = 69/74 (93.24%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSGV 330
            N+RLQQTQAQVDEVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE+SA KLK K+WW+NCKMM+IM  +
Sbjct:   32 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKNKYWWKNCKMMIIMGVI 105

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Medaka
Match: vamp3 (vesicle-associated membrane protein 3 (cellubrevin) [Source:ZFIN;Acc:ZDB-GENE-040625-45])

HSP 1 Score: 130.954 bits (328), Expect = 7.795e-39
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMML 315
            NKRLQQTQAQVDEVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE SA KLKRK+WW+NCK+ L
Sbjct:   15 NKRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKVTL 83

[Close]

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMML 315
            NKRLQQTQAQVDEVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE SA KLKRK+WW+NCK+ L
Sbjct:   15 NKRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKVTL 83

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Medaka
Match: vamp2 (vesicle associated membrane protein 2 [Source:NCBI gene;Acc:101159693])

HSP 1 Score: 129.413 bits (324), Expect = 5.026e-38
Identity = 60/72 (83.33%), Postives = 66/72 (91.67%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMS 324
            N+RLQQTQAQVDEVVDIMRVNVDKVLERD KLSELD+RADALQAGASQFE SA KLK K+WW+N KMM+I+ 
Sbjct:   28 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKNKYWWKNAKMMIILG 99

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Planmine SMEST
Match: SMESG000066166.1 (SMESG000066166.1)

HSP 1 Score: 233.802 bits (595), Expect = 1.487e-78
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1

Query:   34 GYYNMSSFDKNDXXXXXXXXXXXXVNKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSGVFAXXXXXXXXXXXTNNNKSNGTIIKYTSPISTQTSLPEV 447
            GYYNMSSFDKNDIGTPGIPPPSGPVNKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSGVFAIILLIVIVYYVTNNNKSNGTIIKYTSPISTQTSLPEV
Sbjct:    4 GYYNMSSFDKNDIGTPGIPPPSGPVNKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSGVFAIILLIVIVYYVTNNNKSNGTIIKYTSPISTQTSLPEV 141

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Planmine SMEST
Match: SMESG000057424.1 (SMESG000057424.1)

HSP 1 Score: 132.109 bits (331), Expect = 3.623e-39
Identity = 62/72 (86.11%), Postives = 67/72 (93.06%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMS 324
            NKRLQQTQAQVDE+VDIM+ NVDKVLERD KLSELDNRA+ALQAGASQFEASAGKLKRKFW +N KMM+IM 
Sbjct:   28 NKRLQQTQAQVDEIVDIMKSNVDKVLERDQKLSELDNRAEALQAGASQFEASAGKLKRKFWLKNLKMMIIMG 99

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Planmine SMEST
Match: SMESG000033532.1 (SMESG000033532.1)

HSP 1 Score: 125.561 bits (314), Expect = 1.163e-36
Identity = 58/68 (85.29%), Postives = 64/68 (94.12%), Query Frame = 1

Query:  109 NKRLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMM 312
            NKRLQQTQA+++EVVDIMR+NVDKVLERD KLSELDNRADALQAGASQFE SAG+LK KFWWRN KM+
Sbjct:   26 NKRLQQTQAKINEVVDIMRMNVDKVLERDQKLSELDNRADALQAGASQFEESAGRLKSKFWWRNVKML 93

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Planmine SMEST
Match: SMESG000010550.1 (SMESG000010550.1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.968e-23
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 1

Query:  115 RLQQTQAQVDEVVDIMRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKM 309
            RLQQTQ QVD+V ++MR N+ K LERD KLSE+D RA  LQ GA QF+ +A K++RKFWW+N KM
Sbjct:   34 RLQQTQMQVDQVTNVMRENMAKALERDAKLSEMDERAAELQMGAQQFQTTAHKVQRKFWWKNIKM 98

[Close]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Planmine SMEST
Match: SMESG000026855.1 (SMESG000026855.1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.008e-15
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1

Query:  160 MRVNVDKVLERDHKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSGVFA 336
            MR N+DKVLERD +L +L  RA+ ++  A +F A+A + +RKFWW+N KM LI+ GV A
Sbjct:    1 MRQNMDKVLERDKRLDDLSTRAEDMEGNAREFHANAVRARRKFWWQNIKMWLIIGGVAA 59

The following BLAST results are available for this feature:

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Human
BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Celegans
BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Fly
BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Zebrafish
BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Xenopus
BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Mouse
BLAST of V-SNARE coiled-coil homology domain-containing protein vs. UniProt/SwissProt
BLAST of V-SNARE coiled-coil homology domain-containing protein vs. TrEMBL
BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Cavefish
BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Sea Lamprey
BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Yeast
BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Nematostella
BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Medaka
BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Planmine SMEST

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
VAMP1	3.052e-39	78.95	vesicle associated membrane protein 1 [Source:HGNC...	[more]
VAMP2	1.642e-38	85.92	vesicle associated membrane protein 2 [Source:HGNC...	[more]
VAMP1	1.806e-38	83.10	vesicle associated membrane protein 1 [Source:HGNC...	[more]
VAMP2	1.923e-38	85.92	vesicle associated membrane protein 2 [Source:HGNC...	[more]
VAMP2	2.469e-38	84.72	vesicle associated membrane protein 2 [Source:HGNC...	[more]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
snb-1	1.618e-34	80.28	Synaptobrevin-1 [Source:UniProtKB/Swiss-Prot;Acc:...	[more]
snb-2	5.753e-24	56.34	SyNaptoBrevin related [Source:UniProtKB/TrEMBL;Ac...	[more]
snb-2	5.753e-24	56.34	SyNaptoBrevin related [Source:UniProtKB/TrEMBL;Ac...	[more]
vamp-7	1.410e-8	34.29	VAMP (Vesicle Associated Membrane Protein) homolog...	[more]
vamp-8	9.804e-8	35.21	VAMP (Vesicle Associated Membrane Protein) homolog...	[more]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
nSyb	2.023e-35	81.33	gene:FBgn0013342 transcript:FBtr0331461	[more]
nSyb	2.368e-35	83.10	gene:FBgn0013342 transcript:FBtr0331462	[more]
nSyb	2.379e-35	83.10	gene:FBgn0013342 transcript:FBtr0306578	[more]
nSyb	2.379e-35	83.10	gene:FBgn0013342 transcript:FBtr0302310	[more]
nSyb	4.744e-35	83.10	gene:FBgn0013342 transcript:FBtr0072815	[more]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
zgc:92912	2.171e-38	83.33	zgc:92912 [Source:ZFIN;Acc:ZDB-GENE-040718-265]	[more]
vamp2	5.037e-38	83.33	vesicle-associated membrane protein 2 [Source:ZFIN...	[more]
vamp3	7.943e-37	89.55	vesicle-associated membrane protein 3 (cellubrevin...	[more]
vamp3	7.943e-37	89.55	vesicle-associated membrane protein 3 (cellubrevin...	[more]
vamp3	2.997e-36	89.55	vesicle-associated membrane protein 3 (cellubrevin...	[more]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
idh1	3.669e-38	80.26	isocitrate dehydrogenase 1 (NADP+) [Source:Xenbase...	[more]
vamp3	9.141e-37	88.06	vesicle associated membrane protein 3 [Source:NCBI...	[more]
vamp3	1.806e-36	88.06	vesicle associated membrane protein 3 [Source:NCBI...	[more]
vamp4	5.169e-16	39.47	vesicle associated membrane protein 4 [Source:NCBI...	[more]
vamp4	7.337e-15	38.89	vesicle associated membrane protein 4 [Source:NCBI...	[more]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Vamp1	4.600e-40	80.26	vesicle-associated membrane protein 1 [Source:MGI ...	[more]
Vamp1	3.346e-39	84.51	vesicle-associated membrane protein 1 [Source:MGI ...	[more]
Vamp1	4.349e-39	83.33	vesicle-associated membrane protein 1 [Source:MGI ...	[more]
Vamp2	1.128e-38	85.92	vesicle-associated membrane protein 2 [Source:MGI ...	[more]
Vamp1	4.975e-38	83.33	vesicle-associated membrane protein 1 [Source:MGI ...	[more]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P47194\|SYB_DORPE	2.830e-40	87.67	Synaptobrevin OS=Doryteuthis pealeii OX=1051067 PE...	[more]
sp\|Q62442\|VAMP1_MOUSE	3.218e-39	80.26	Vesicle-associated membrane protein 1 OS=Mus muscu...	[more]
sp\|Q0V7N0\|VAMP1_BOVIN	3.868e-39	80.26	Vesicle-associated membrane protein 1 OS=Bos tauru...	[more]
sp\|P23763\|VAMP1_HUMAN	1.466e-38	78.95	Vesicle-associated membrane protein 1 OS=Homo sapi...	[more]
sp\|P13701\|SYB_TETCF	2.856e-38	83.10	Synaptobrevin OS=Tetronarce californica OX=7787 PE...	[more]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A2I0LW24	1.117e-38	85.53	Vesicle-associated membrane protein 2 OS=Columba l...	[more]
M7B855	1.210e-38	85.53	Vesicle-associated membrane protein 1 (Fragment) O...	[more]
U3JN91	2.072e-38	85.53	V-SNARE coiled-coil homology domain-containing pro...	[more]
A0A452H4N4	2.152e-38	85.53	V-SNARE coiled-coil homology domain-containing pro...	[more]
H0Z4K7	2.479e-38	85.53	V-SNARE coiled-coil homology domain-containing pro...	[more]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
vamp1	6.597e-40	84.72	vesicle-associated membrane protein 2-like [Source...	[more]
vamp1	6.597e-40	84.72	vesicle-associated membrane protein 2-like [Source...	[more]
vamp1	6.597e-40	84.72	vesicle-associated membrane protein 2-like [Source...	[more]
vamp1	6.597e-40	84.72	vesicle-associated membrane protein 2-like [Source...	[more]
zgc:92912	6.863e-38	83.10	zgc:92912 [Source:ZFIN;Acc:ZDB-GENE-040718-265]	[more]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
ENSPMAT00000008529.1	1.362e-40	81.58	pep scaffold:Pmarinus_7.0:GL484641:5659:9131:-1 ge...	[more]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 3


Match Name	E-value	Identity	Description
SNC1	1.001e-10	34.33	Vesicle membrane receptor protein (v-SNARE); invol...	[more]
SNC2	1.311e-10	33.87	Vesicle membrane receptor protein (v-SNARE); invol...	[more]
NYV1	1.316e-6	30.30	v-SNARE component of the vacuolar SNARE complex; i...	[more]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 4


Match Name	E-value	Identity	Description
EDO42383	6.274e-38	83.10	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO44396	2.197e-11	37.50	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO43738	7.927e-10	37.50	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO39013	3.010e-7	29.58	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
vamp1	5.175e-40	83.78	vesicle-associated membrane protein 2-like [Source...	[more]
vamp1	1.058e-39	83.78	vesicle-associated membrane protein 2-like [Source...	[more]
vamp3	7.795e-39	88.41	vesicle-associated membrane protein 3 (cellubrevin...	[more]
vamp3	7.795e-39	88.41	vesicle-associated membrane protein 3 (cellubrevin...	[more]
vamp2	5.026e-38	83.33	vesicle associated membrane protein 2 [Source:NCBI...	[more]

BLAST of V-SNARE coiled-coil homology domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000066166.1	1.487e-78	100.00	SMESG000066166.1	[more]
SMESG000057424.1	3.623e-39	86.11	SMESG000057424.1	[more]
SMESG000033532.1	1.163e-36	85.29	SMESG000033532.1	[more]
SMESG000010550.1	3.968e-23	63.08	SMESG000010550.1	[more]
SMESG000026855.1	3.008e-15	52.54	SMESG000026855.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30018272 ID=SMED30018272|Name=V-SNARE coiled-coil homology domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=718bp
ATTAAATCAAAATTAACTTATTAATAATTTAAAGGATATTACAATATGTC
AAGTTTTGATAAAAATGACATAGGCACTCCAGGAATACCTCCCCCATCAG
GTCCAGTTAATAAGAGATTACAGCAAACTCAAGCTCAAGTGGATGAAGTG
GTGGACATTATGAGAGTCAATGTTGACAAGGTTTTGGAGCGAGATCATAA
ATTATCAGAATTGGATAATAGAGCAGATGCTTTACAAGCTGGCGCATCGC
AATTTGAAGCAAGTGCTGGTAAACTGAAACGAAAATTTTGGTGGAGGAAT
TGCAAGATGATGCTAATTATGTCTGGAGTTTTCGCAATAATTTTACTGAT
TGTAATTGTTTATTACGTCACAAACAATAATAAAAGTAATGGAACAATAA
TTAAATATACAAGTCCTATTTCAACGCAGACAAGCTTACCGGAAGTCATT
AGAACTCCAATTTCAATTAACATCAGCACCAACTCAACTATTCGCACTAA
ATAATCAATTTCATTTCATTTTTAGGAATTTATTCAAAAGTTTAACACAG
CATTTTCTCTCTATCATATTATTTTTGTCTCATTTATCTTAAATTAGATT
GTGTATTTAATTCAAATTGTTTTAACAATGTTATTATTTGATTGTTAAAG
AAACGCAATATAAAAAAAGTGAAAGTGACAGAAATTCGTCTATTTCACTG
TGTTTGCTTGTTTGAATA

protein sequence of SMED30018272-orf-1

>SMED30018272-orf-1 ID=SMED30018272-orf-1|Name=SMED30018272-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=153bp
MSSFDKNDIGTPGIPPPSGPVNKRLQQTQAQVDEVVDIMRVNVDKVLERD
HKLSELDNRADALQAGASQFEASAGKLKRKFWWRNCKMMLIMSGVFAIIL
LIVIVYYVTNNNKSNGTIIKYTSPISTQTSLPEVIRTPISINISTNSTIR
TK*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000099	neuron
PLANA:0000418	head

Vocabulary: **INTERPRO**
Term	Definition
IPR016444	Synaptobrevin/VAMP
IPR042855	V_SNARE_CC
IPR001388	Synaptobrevin

Vocabulary: **cellular component**
Term	Definition
GO:0016021	integral component of membrane
GO:0005739	mitochondrion
GO:0009986	cell surface
GO:0016020	membrane
GO:0030054	cell junction
GO:0070821	tertiary granule membrane
GO:0030659	cytoplasmic vesicle membrane
GO:0030672	synaptic vesicle membrane
GO:0031201	SNARE complex
GO:0031410	cytoplasmic vesicle
GO:0035579	specific granule membrane
GO:0043005	neuron projection
GO:0043195	terminal bouton
GO:0045202	synapse

Vocabulary: **biological process**
Term	Definition
GO:0016192	vesicle-mediated transport
GO:0006887	exocytosis
GO:0035493	SNARE complex assembly

Vocabulary: **molecular function**
Term	Definition
GO:0005484	SNAP receptor activity
GO:0019905	syntaxin binding

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001388	Synaptobrevin	PRINTS	PR00219	SYNAPTOBREVN	coord: 49..68 score: 60.81 coord: 85..104 score: 36.62 coord: 29..48 score: 74.19
IPR001388	Synaptobrevin	PFAM	PF00957	Synaptobrevin	coord: 22..108 e-value: 1.1E-32 score: 111.7
IPR001388	Synaptobrevin	PROSITE	PS00417	SYNAPTOBREVIN	coord: 42..61
None	No IPR available	GENE3D	G3DSA:1.20.5.110		coord: 2..109 e-value: 2.1E-45 score: 155.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR45701:SF5	VESICLE-ASSOCIATED MEMBRANE PROTEIN 2	coord: 9..109
None	No IPR available	CDD	cd15870	R-SNARE_VAMP2	coord: 23..85 e-value: 1.92756E-45 score: 140.984
None	No IPR available	SUPERFAMILY	SSF58038	SNARE fusion complex	coord: 22..86
None	No IPR available	TMHMM	TMhelix		coord: 88..110
IPR016444	Synaptobrevin/Vesicle-associated membrane protein	PANTHER	PTHR45701	FAMILY NOT NAMED	coord: 9..109
IPR042855	v-SNARE, coiled-coil homology domain	PROSITE	PS50892	V_SNARE	coord: 24..84 score: 18.076