SMED30018210

Overview
NameSMED30018210
Smed IDSMED30018210
Length (bp)6135
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30018210 (SMED30018210) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30018210 (SMED30018210) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30018210 (SMED30018210) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30018210 (SMED30018210) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30018210

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 14

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30018210h1SMcG0008607 SmedASXL_017858SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30018210h1SMcG0008607 SmedASXL_017858SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30018210h1SMcG0008607 SmedASXL_017857SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30018210h1SMcG0008607 SmedASXL_017857SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30018210h1SMcG0008607 SmedASXL_017856SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30018210h1SMcG0008607 SmedASXL_015556SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30018210h1SMcG0008607 SmedASXL_015556SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
anterior sideSMED30018210h1SMcG0008607 dd_Smed_v4_16259_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parapharyngeal regionSMED30018210h1SMcG0008607 dd_Smed_v6_11023_1_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
parapharyngeal regionSMED30018210h1SMcG0008607 dd_Smed_v6_16259_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
zeta neoblastSMED30018210h1SMcG0008607 dd_Smed_v4_16259_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
zeta neoblastSMED30018210h1SMcG0008607 dd_Smed_v4_11023_1_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
neoblastSMED30018210h1SMcG0008607 SMED_17231_V2_1GPL14150_gene_modelsPMID:22385657
Wagner et al., 2012		whole organism asexual adult cDNA to DNA expression microarray evidence
neoblastSMED30018210h1SMcG0008607 SMED_17231_V2_1GPL14150PMID:22385657
Wagner et al., 2012		whole organism asexual adult cDNA to DNA expression microarray evidence
Note: Hover over icons to view figure legend
Alignments
SMED30018210 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000158:210427..230440 +26801
Homology
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BLAST of SMED30018210 vs. Ensembl Zebrafish
Match: kntc1 (kinetochore associated 1 [Source:ZFIN;Acc:ZDB-GENE-050208-92])

HSP 1 Score: 52.373 bits (124), Expect = 9.430e-6
Identity = 93/456 (20.39%), Postives = 179/456 (39.25%), Query Frame = 2 
Query:  929 NESATLDLISFPKMDVIEKFPVANNSIIMPFHHHSDSILLIIQSLQNV----------AMLKSISRLDPNIKLREIIGMGNYDQARKFADIYRLDQEIIYIDELT----RLIAEWDNNQQLLTPDQEIRLHCCVQQLRTYFHSDTFKQLIIITMSTFSQEQSHLSALRQQALSHISSGNGDQIYNMIVQECDRFRIFALIYPPNRYSIRCWNAFRN-----QDIEAIWFDAMKQADINVIKEIWNLSQHEIESIFTSSNSEFCHYLQILGITMITNQCSVTKFSAFFDWLTSEVVPKQIEIAPEQLVFLIDAIETIVRKMEATHNIDYRNECVFILERIIANVERIYLNANTPRMKAHVIAARLPSGLERVNPIKRLISLKNDLHQIQRLLINFSLDLNLHVLANETGISLAIRILDQTSNNDLISAAVWEKFRSFLREFEIRETEFYLHYIYEKL 2239
            + S  L + S   M+V     V++ S ++      D+I L+   L N            +++  +   P  +L +++    +++A KFA  + LD E++Y  +L     +LI+   N+Q +  P+        +Q+ +T       +Q ++      S     LS   +     ++     QI   +     +   F+ +Y PN +    W  F N     +DI A+    +K+ ++N  + +W   +HE E  F S   E C +       ++++  S         W    VVP    + P+    +   +E   R +E T   D+    + + E  + ++ R    A                G E V  ++ L++   +L Q+  L I ++  L+L      +  S+A  +LD+    +LI A V      +  E  +   +  L YI + L
Sbjct:  387 DHSRKLVVQSLSSMEVFYSLEVSSESWLIQKGISMDTIYLLEGVLANTKSSPEDPVSTVVIRCFTEALPENRLNKLLYKHKFEEAEKFAKTFGLDVELVYKVKLNVVLEKLISASGNDQTIEWPE-------LIQEAKTNLMKIMDEQFVV--QYCLSASWPTLSIAEEMLNYTLNRFPCCQIQTALA----KLATFSSMYGPNNFDGIKWIEFLNSTDYLKDILAL----LKEGNVNGAQYLW--LRHEGE--FASEFDEACFH------ALLSSISSDIPSQDLIPWFKGVVVPFVWRVLPKGQKIIARWLEHRARNLELTEKSDWPQNGLLLAELGLPSLWRSMGLAEI-------------CGAEEVESLRSLVA---NLRQLCDLYIKYNCHLSLSDYERGSTRSMAFLMLDKVQAPELIPAVVESSVEPYALENGLDLDQTLLDYIKDLL 799
[Close]
BLAST of SMED30018210 vs. TrEMBL
Match: A0A087TKI9 (Kinetochore-associated protein 1 (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_01976 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.099e-10
Identity = 92/384 (23.96%), Postives = 175/384 (45.57%), Query Frame = 2 
Query: 4271 LNILEEFLECFQFKNNQYYFEYFREIIKTDLSACSSFDEYKLE--IERLISRAEEIWKRIHVSNELI----NEIVSELGNSICNSSQYQYELLIYLYDKLNSFNGD--------YSWEIKIIKLLDSWRRTSPATIEEINFVQKFHTRNAEY--LMKRRLPFHAVIGDNPMTVIGPELNDTNTPVWLEIYNSINQMKTNRIDIINKDMLLKTSVKNQITKFLVDQNLTNNNVHKEHVFMGEYFKYCSLWFNKILVDIPVTFDNLVMNEVFMQIIKEFQSYLVIGEQLIKIMEIALAWVDKKLESSFCVSREELLNWRLEIIENLQNLRIEEILYRYNFYKSYYLENLSDHHLLLETIL-NRERLNIGKVSAKRLNDVVTIVVEI 5371
            L+ + E+   F+  +N     YF +I+ TDL  C   D    E  ++  +  AE I K I    ELI    N ++ ++G        Y YE+ +++ ++L S + +        Y   IK++K L  +RR S    EE+N+ + FH  N++   +  +RLPF+A    +P +VI PELN     VWL+I   +          I+ D L+  +V+N++ K+L  + +       +H+ +    ++ S   N++LV I V        E+ +       + +  G   +    + +++  +  E +        +  +L+ +   Q++ IE  LY+YN      L  +S  + L+E +L N   + +  +   R +  ++ +V+I
Sbjct:   70 LSTVHEYCYAFELPSNHVLIAYFNKIL-TDLEKCYLADSENPEEDVKYGLRHAEFIIKDIK-DEELILKNLNMLLEKVG-------PYSYEIFLFIEEQLLSVSANIQTISCASYELNIKLLKFLKVYRRISVPLEEELNYWRTFHPTNSKLPSIALKRLPFNAFFKKSPYSVIDPELNANTVSVWLKIAPLLK---------ISSDQLIIVAVQNEVNKYL--EKIC------DHIVLNPDKQFVSS-INEMLVKISVP-------EMAVGCASWVTNRMPAGGNRVLFATMTVSFAAQWSEVALASQNVRQVYKKLDALR--QHIAIERELYKYNIATEATLCLISSPYELVEHLLENYSLIAVQTIKVCRASVNISSIVDI 417
[Close]
BLAST of SMED30018210 vs. TrEMBL
Match: A0A4Y2KFP2 (Kinetochore-associated protein 1 OS=Araneus ventricosus OX=182803 GN=KNTC1 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.673e-10
Identity = 78/348 (22.41%), Postives = 143/348 (41.09%), Query Frame = 2 
Query: 3926 KHILKSRILDVSLLSGLILICSPGVAYREIETLIRKCSKNNKVLLSLYSIAFRVLQNYRDIDIPNRVPTLMAMQKEVHKKMWSQKLSNFNINIKSLNKNDLNKTKLEIFQHP-----------------KMSLNILEEFLECFQFKNNQYYFEYFREIIKTDLSACSSFDEYKLEIERLISRAEEIWKRIHVSNELINEIVSELGNSICNSSQYQYELLIYLYDKLNSFN--------GDYSWEIKIIKLLDSWRRTSPATIEEINFVQKFHTRNAEY--LMKRRLPFHAVIGDNPMTVIGPELNDTNTPVWLEIYNSINQMKTNRIDIINKDMLLKTSVKNQITKFL 4888
            + +L  R +D++   GL+        +  ++ LI+ CS N   L ++  I   V + ++  D        ++M + ++KK               L+++++    +EI  H                  +M L  + E    FQ   N     Y   I+        + D   +E+  ++ +A  +   I     L N + S +       S Y YE L++    L+S +        G +    KI+K L  ++RTSP T  EI+     +  N +   +  +RLPFH    +NP ++I PEL+ +   +WL+I + +          I +D L+  +VKN + K+L
Sbjct:  588 QKVLSQRRVDLNFAYGLLSALPENSQFGPLKCLIKWCSSNLNRLAAVARIGIEVAKYFQKSDA-------LSMYENIYKKA------------SLLSRSNVRSVPMEIILHSSSHESSWPVVKDLILTQEMDLPTVYECCSAFQLPTNNVLTTYLNHILLESEKKFLNNDSTDVEVMHILEQAAAVINCIKDEELLCNNLKSLMKKI----SPYSYEFLLFTDKILHSLSANLQTINTGSFQKNSKILKFLKVYKRTSPITDTEIDRWSALYPTNPKLPEIASKRLPFHFFGQENPFSIINPELSASTVDIWLKIASVLK---------IPEDHLMIIAVKNTVLKYL 903
[Close]
BLAST of SMED30018210 vs. TrEMBL
Match: A0A1S3K1C5 (kinetochore-associated protein 1-like OS=Lingula unguis OX=7574 GN=LOC106177753 PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.243e-8
Identity = 70/324 (21.60%), Postives = 142/324 (43.83%), Query Frame = 2 
Query: 3983 ICS---PGVAYREIETLIRKCSKNNKVLLSLYSIAFRVLQNYRDIDIPNRVP-TLMAMQKEVHKKMWSQKLSNFNINIK-SLNKNDLNKTKL--EIFQHPKMSLNILEEFLECFQFKNNQYYFEYFREII--KTDLSACSSFDEYKLEIERLISRAEEIWKRIHVSNELINEIVSELGNSICNSSQYQYELLIYLYDKLNSFNGDYSWE--IKIIKLLDSWRRTSPATIEEINFVQKFH-------TRNAEYLMKRRLPFHAVIGDNPMTVIGPELNDTNTPVWLEIYNSINQMKTNRIDIINKDMLLKTSVKNQITKFLVDQN 4900
            ICS     +A   +  L R+   N K LL++ ++        +D  + ++ P  L+   +      W  K S F I+ K +       K KL  ++  H ++ L ++ E+   F    N+  FEY   ++  K+ L+  +        IE + ++               ++++ +L + +     Y YE L Y+  K+N  +     +  +K+++ L  + R++P +  EIN+             R    L ++RLPFH ++   P  +I PELN +   +WL I   + ++ T+++ +     ++K  V+ +  K  +D++
Sbjct: 1190 ICSLQNKKIAMEMMTKLTRQAGLNYKTLLAIATVG-------KDYAVLSKEPKVLLKCNEMAANAKWGHKFSKFKISFKEAYEGKGEEKRKLIPQLVHHEQVELELIGEYCRAFNLDENEALFEYLEALLLGKSHLTVSARHRMATRVIEGITAK---------------DKLLPKLNSIVLQIDPYAYEELDYMLIKINELDSSAYVQKGLKLLEYLSFYVRSAPPSDYEINYKHITEDEQLLGGGRALAPLSEKRLPFHPLLMGEPWKIITPELNASTVSLWLPI-TQLLKLNTDQVYLTTIQNIIKKHVEGKKAKETLDKS 1490
[Close]
BLAST of SMED30018210 vs. TrEMBL
Match: A0A4Z2DVT2 (Kinetochore associated 1 OS=Schistosoma japonicum OX=6182 GN=EWB00_003395 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.610e-8
Identity = 112/508 (22.05%), Postives = 206/508 (40.55%), Query Frame = 2 
Query:  929 NESATLDLISFPKMDVIEKFPVANNSIIMPFHH-------HSDSILLIIQ--------SLQNVAMLKSISRLDPNIKLREIIGMGNYDQARKFADIYRLDQ---EIIYIDELTRLIAEWDNNQQLLTPDQEIRLHCCVQQLRTYF-HSDTFKQLIIITMSTFSQEQSHLSALRQQAL---SHISSGNGDQIYNMIVQECDRFRIFALIYPPNRYSIRCWNAFRNQDIEAIWF-----DAMKQADINVIKEIWNLSQHEIESIFTSSNSE-FCHYLQILGITMITN-------QCSVTK-------------FSAFFDWLTSEVVPKQIEIAPEQLVFLIDAIETIVRKMEATHNIDYRNECV---------------------FILERIIA---NVERIYLNANTPRMKAHVIAARLPSGLERVNPIKRLISLKNDLHQIQRLLINFSLDLNLHVLANETGISLAIRILDQTSNNDLISAAVWEKFRS-FLREFEIRETEFYLHYIYE 2233
              S  L+LI FP   VI +  V+ +S ++  +         + S +L  +        SL+N   +K++   +P  +L+ ++   N+++AR     + LD    +++   EL  L+     + Q    D   RL  C+QQ    + H D  + ++ ITM     +   L  ++++ +   S   S   + I   ++    R + F +I+ P+ Y+I+ W  FR+++I  I+       +   +D++     W L + E+    T    E  C+ L    +T  T+       QC  T                A   W+ +E++P  I  +P+ L  L+  +   V+++EA       N CV                     F+    I+   N E +Y   +   +    IA+R P+    V+P   L  L   L  I+ L   ++  L++     ET +S+A RILD   N         +K  + +L++  I    F+  Y Y+
Sbjct:  298 GPSKLLELILFPSYQVIYRTNVSKDSWLLSDYDVGSYKAVSTGSQVLYAELLSKRPDESLENFLSIKALRATNPKERLQHLLISKNFEEARLLVKTFNLDCKDFQLVVTTELEFLVNTIHKHDQ--GDDLYPRLLTCLQQTEELWKHLDIVESILRITMPKSDDQLKLLLIIKEKLIIGNSEDMSTEHEDIGIKVLILLKRLKAFLMIHGPDNYTIKTWVEFRDENIYVIFARLFLSKSEGTSDLSQAFLFWILYKGELSEFLTWDTLELLCNLLSKRPLTCFTSNHLQSGHQCDSTNSPYQSQELELLESEEAIQKWIRNELLPVVIRQSPDALPLLVKYLTQRVKELEACSFTSNSNICVQENKLKCPFSWPSTAISWINKFLDSVNISESINQECVYNIGSVADLYLSGIASRDPN----VDPFYELRKLAKQLETIKLLRDVYNCHLSIDFCEGETELSIAYRILDVAFNLGTCFDNGIDKLTARYLKDRNIDHQTFFQGYSYD 799
[Close]
BLAST of SMED30018210 vs. TrEMBL
Match: A0A5J4NVG0 (Rod_C domain-containing protein (Fragment) OS=Paragonimus westermani OX=34504 GN=DEA37_0006939 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.407e-8
Identity = 103/523 (19.69%), Postives = 205/523 (39.20%), Query Frame = 2 
Query:  944 LDLISFPKMDVIEKFPVANNSIIM-------------PFHHHSDSILL------IIQSLQNVAMLKSISRLDPNIKLREIIGMGNYDQARKFADIYRLDQEIIYIDELTRLIAEWDNNQQLLTP-----------------DQEIRLHCCVQQLR-TYFHSDTFKQLIIITMSTFSQEQSHLSALRQQALSHISSGN--GDQIYNMIVQECDRFRIFALIYPPNRYSIRCWNAFRNQDIEAIWFDAMKQA--------DINVIKE------IWNLSQHEIESIFTSSNSE-FCHYLQILGITMITNQCS---------VTKFSAFFDWLTSEVVPKQIEIAPEQLVFLIDAIETIVRKMEA--------THNIDYRNE---CVFILERIIANVERIYLNANT--------PRMKAHVIAARLPSGLE----RVNPIKRLISLKNDLHQIQRLLINFSLDLNLHVLANETGISLAIRILDQTSNNDL-ISAAVWEKFRSFLREFEIRETEFYLHYIYEKLIGKL 2251
            L++++FP  DV+ +  V   + ++             PF   +D +L        +     +  +K++  + P  ++R ++    +D+AR     + L    +   E+  +   W  ++   TP                 +Q  +L  C++++   + H D   QL+ + M T   +   L  L+++  S   + N   ++  + + +   R + F L+Y  NR+S+  W  F + DI  ++   +  +        +I++  +      +W+L + E+  + TS+N E  C+ L    +T     C          V   +  + WL SE++P  +   P+ L  ++  +   + ++E+         H +   +    C F       +     L A +        P +   V   R  SGL      V+P+  L  L   L  I  L   + L L+L     E  +S+A RILD   N+ +     +      +L++  +    FYL Y  + LI K+
Sbjct:  207 LEVVAFPSGDVLHQLTVGTQTWLLSTENSGALAVENRPF---TDCVLFAELTSNTVDKDSQLVSIKALQTISPEQRIRRLLKEHRFDEARHVLAEFNLKS--VLCQEVALIQLRWYLSEGFATPAQSSAESKQDHFKAPSVEQGYQLLVCLREIEEIWLHVDLLTQLLDVIMPTSDLQMDLLLLLKEKLCSSSRTQNLPPEEPISQVFKRLKRLKTFLLLYGANRFSVLAWTGFMHTDIYVMFIRLLVNSNDCGPHCDEISLPSDPSKAFLVWDLYKGELLDLLTSANLERLCNLLAQRPLTYTVEDCESKSDYRRNFVAAETILYRWLRSELLPAVVRKCPDALSVIVQFVVQRISQLESCWSRCSSVAHTVSQFSSSEICPFDWPASALSWADALLTAASVDTSELLFPTIGDQV--DRFMSGLASLDPEVDPMVSLRRLAKQLQTIDSLYRVYGLRLSLDCFDEEDELSIAYRILDIAFNSGIPFVDGIDPTTARYLKDRRVDLQAFYLGYTLD-LISKV 721
[Close]
BLAST of SMED30018210 vs. Ensembl Nematostella
Match: EDO42986 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RZQ2])

HSP 1 Score: 56.6102 bits (135), Expect = 1.280e-7
Identity = 50/225 (22.22%), Postives = 101/225 (44.89%), Query Frame = 2 
Query: 4166 MWSQKLSNFNINIK---SLNKNDLNKTKLEIFQHPKMSLNILEEFLECFQFKNNQYYFEYFREIIKTDLSACSSFDEYKLEIERLISRAEEIWKRIHVSNELINEIVSELGNS-----ICNSSQYQYELLIYLYD-KLNSFNGDYSWEIKIIKLLD---SWRRTSPATIEEINFVQKF----------HTRNAEYLMKRRLPFHAVIGDNPMTVIGPELNDTNTP 4774
            +W ++LS   I I+   ++N+ ++++   ++ Q    +++++++F   F+    +    Y + ++    +      + +L     IS+  E   ++   +E++  I S+L        +    QY Y  L+Y+ +    S  GD +   + I LL     + R +P +  EINF+              TR    L + RLPFH+++  +P  VI PEL+    P
Sbjct:  781 LWGERLSAIKIYIQDVYNVNREEISQLLPKLIQDKSATVDMIKDFCRSFKVAEEEALLHYVKTLLLPTANPLPQAQKPRLGHTPGISKGAEYEAKV---DEVVQFIPSQLLLQLLMEILPKVDQYDYTRLLYVLNLAKRSTTGDTATVDEAISLLGYLVHYERVAPPSKYEINFLHTSKSDEDKIPLSSTRPLSPLAQTRLPFHSLLYGDPWKVITPELSRETVP 1002
[Close]
BLAST of SMED30018210 vs. Ensembl Nematostella
Match: EDO42982 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RZP7])

HSP 1 Score: 56.225 bits (134), Expect = 1.583e-7
Identity = 118/571 (20.67%), Postives = 211/571 (36.95%), Query Frame = 2 
Query:  236 SSNGRYVALLTKSKSLYLIYTPGKKIFLKQDLNLKNENIYDMKTIEINEVTSEIWLFARQKAIVIRNINFS-HLYEVITGYDNQEKSNLSQQIRLNNVTLPFTNEQSEIVDVNVARCRNYNQLLI---GILYWDMFALMLVTANEESSSVLFTHSVELKDLG---IDLCQNKSASISFASDEMNVFILDGKHTLWIYNFLTESICGTLTTPSDSCLRF--------QVSRDHSSNADTVVFINEIDNESAT--LDLISFPKMDVIEKFPVANNSIIMPFHHHSDSILLIIQSLQNVAMLKSISRLDPNIKLREIIGMGNYDQARKFADIYRLDQEIIY-------IDELTRLIAEWDNN-----QQLLT--PDQEIRLHCCVQQLRTYFHSDTFKQLIIITMSTFSQEQSHLSALRQQALSHISSGNGDQIYNMIVQECDRFRIFALIYPPNRYSIRCWNAFRNQDIEAIWFDAMKQADINVIKEIWNLSQHEIESIFTSSNSEFCHYLQILGITMITNQCSVTKFSAFFDWLTSEVVPKQIEIAPEQLVFLIDAIETIVRKMEATHNIDY 1855
            S +  +V +  +S S++ I+ P KKI   + L             EI+E ++        K+ V  N+NFS H  + I   D     +L + + +    +   +EQ  +  V        + L     G+  W    +      EES  +     +    LG   + +CQ              + ILD ++ L +++   ES+    T P  S   F        + + + S   D +V + +  +E A   L ++  P M  +    VAN  I  P    +   +  I+ +           LD   +L  ++  G +D+A KFA  + LD+E+++        D L++   +   +     Q+ L+   + E  +  C+Q L      DTF  L         +    L +L   + SH        + N ++Q  DR   F   Y    +S   W++FR+ D+           +++    IW   Q E E+     N+      Q L  +++              WL  ++VP  +   P+    L   +E   R ME T    +
Sbjct:   93 SDDSLFVVVGDRSGSIHFIHFPSKKIIFSEKL-----------IQEIDESST--------KSAVFLNVNFSQHNQDAIESQDFGSMKHLHESMTIRCTDVSLAHEQDYVHGVVPFSFNGTSALATYGNGLCVWGQDPM-----QEESQYLALFEKLSSFILGSGILKVCQTSHGDF--------LVILDDRNILSLWD--AESLTLVATWPHISVEDFLLISASDMESTGEGSDEDDKIVIMTKPADEKANQFLQILKLPSMTQVYSLQVANCRI--PQAPSNQETIYFIEGI-----------LD---RLFRLLHKGKFDEAEKFARQFNLDEELVFKVKANSLFDTLSKSSGQGGESSLLQLQECLSKIKEDEYVVESCLQALAPTLE-DTFNILSYARKRVLEKASPTLKSL---SPSHC-------LLNKVLQVRDRLATFQKAYGVANFSGPRWHSFRSADLFNEVVKCFGYGEVHSAVTIWARHQSEFEASMGKLNALLMSIPQDLTSSLL------------LPWLRDDLVPFVLRRLPKGTDNLALWLEQRARNMEITEKSGW 590
[Close]
BLAST of SMED30018210 vs. Planmine SMEST
Match: SMESG000002162.1 (SMESG000002162.1)

HSP 1 Score: 3822.32 bits (9911), Expect = 0.000e+0
Identity = 1964/2010 (97.71%), Postives = 1964/2010 (97.71%), Query Frame = 2 
Query:   92 KIDVNKVSLFRGNNVFGFSYEVNLFFKENTGNNDAFLKMIDDSIFATCSSNGRYVALLTKSKSLYLIYTPGKKIFLKQDLNLKNENIYDMKTIEINEVTSEIWLFARQKAIVIRNINFSHLYEVITGYDNQEKSNLSQQIRLNNVTLPFTNEQSEIVDVNVARCRNYNQLLIGILYWDMFALMLVTANEESSSVLFTHSVELKDLGIDLCQNKSASISFASDEMNVFILDGKHTLWIYNFLTESICGTLTTPSDSCLRFQVSRDHSSNADTVVFINEIDNESATLDLISFPK-------------------MDVIEKFPVANNSIIMPFHHHSDSILLIIQSLQNVAMLKSISRLDPNIKLREIIGMGNYDQARKFADIYRLDQEIIYIDELTRLIAEWDNNQQLLTPDQEIRLHCCVQQLRTYFHSDTFKQLIIITMSTFSQEQSHLSALRQQALSHISSGNGDQIYNMIVQECDRFRIFALIYPPNRYSIRCWNAFRNQDIEAIWFDAMKQADINVIKEIWNLSQHEIESIFTSSNSEFCHYLQILGITMITNQCSVTKFSAFFDWLTSEVVPKQIEIAPEQLVFLIDAIETIVRKMEATHNIDYRNECVFILERIIANVERIYLNANTPRMKAHVIAARLPSGLERVNPIKRLISLKNDLHQIQRLLINFSLDLNLHVLANETGISLAIRILDQTSNNDLISAAVWEKFRSFLREFEIRETEFYLHYIYEKLIGKLXXXXXXXXXXXXXXXYSMIFTRFTFLLDKVDDRQAQLEALAEFASHTDMPFKEQLNSIIQVRIATNCSSNPVVEKXXXXXXXXXXXPMCTRHGIKFNSKKFNAKKLLLHILQSESAVSPADSQSADIDIIMREFNYEEIVLLEQRCQVYVNDIFFKEQIISYESFRKLSQILVDVKLTNCMKIRLLKLSFSKLNHLMNQIYIWNFDTLEFISEVGYFMAEKLSEEERRNYFLELFSILRFCIRLHSCHFTTGTAIHISQILGNDLSLSDLTKQSNFTQKTIFTYFYDRFLQIISRDDCDYLQATEKIFELIQSKKNLCQESLNLKNDYFKIVVNVLVSIGNYFVSDNQSLITYAIYYGLEVIFKSIEEISSTSSDVIVCRYSHEIRNLLVMVLEIDIASNIFMVFKIFETFQKFCGIYIVNNIKYHSHKYNVLQRIVILLKSLTRNFACLHKPEYFDLQKINKTLFQEKPNLLDSITGFVPFIKSGLTVISCGDENYDNALLAFINECQLVLPLFLEHNXXXXXXXXXXXXXXXXXXXXXXNTYTQIDSREKICLKAWKHILKSRILDVSLLSGLILICSPGVAYREIETLIRKCSKNNKVLLSLYSIAFRVLQNYRDIDIPNRVPTLMAMQKEVHKKMWSQKLSNFNINIKSLNKNDLNKTKLEIFQHPKMSLNILEEFLECFQFKNNQYYFEYFREIIKTDLSACSSFDEYKLEIERLISRAEEIWKRIHVSNELINEIVSELGNSICNSSQYQYELLIYLYDKLNSFNGDYSWEIKIIKLLDSWRRTSPATIEEINFVQKFHTRNAEYLMKRRLPFHAVIGDNPMTVIGPELNDTNTPVWLEIYNSINQMKTNRIDIINKDMLLKTSVKNQITKFLVDQNLTNNNVHKEHVFMGEYFKYCSLWFNKILVDIPVTFDNLVMNEVFMQIIKEFQSYLVIGEQLIKIMEIALAWVDKKLESSFCVSREELLNWRLEIIENLQNLRIEEILYRYNFYKSYYLENLSDHHLLLETILNRERLNIGKVSAKRLNDVVTIVVEIAKMTNIDIEAFACQFTKVGLKLVMVTQDSYSESDGDLSMLNTSCEISIEESRLEKKEYIYVDIHELEILSLNDAIRFAVKNSLFAFIKENMLTLQQWNNIFQYFFHTFRIAEDQDVDYLCTSHWYCAFQIFLELNLMNIQKYNYTEISNNEYIIKKKLREFSLQDKTGIVKQLYXXXXXXXXXXXXXRAATPARSPNHIAVLKDIINKYPETIDFHDEHIKSIREKVFSEN 6064
            KIDVNKVSLFRGNNVFGFSYEVNLFFKENTGNNDAFLKMIDDSIFATCSSNGRYVALLTKSKSLYLIYTPGKKIFLKQDLNLKNENIYDMKTIEIN                           VITGYDNQEKSNLSQQIRLNNVTLPFTNEQSEIVDVNVARCRNYNQLLIGILYWDMFALMLVTANEESSSVLFTHSVELKDLGIDLCQNKSASISFASDEMNVFILDGKHTLWIYNFLTESICGTLTTPSDSCLRFQVSRDHSSNADTVVFINEIDNESATLDLISFPK                   MDVIEKFPVANNSIIMPFHHHSDSILLIIQSLQNVAMLKSISRLDPNIKLREIIGMGNYDQARKFADIYRLDQEIIYIDELTRLIAEWDNNQQLLTPDQEIRLHCCVQQLRTYFHSDTFKQLIIITMSTFSQEQSHLSALRQQALSHISSGNGDQIYNMIVQECDRFRIFALIYPPNRYSIRCWNAFRNQDIEAIWFDAMKQADINVIKEIWNLSQHEIESIFTSSNSEFCHYLQILGITMITNQCSVTKFSAFFDWLTSEVVPKQIEIAPEQLVFLIDAIETIVRKMEATHNIDYRNECVFILERIIANVERIYLNANTPRMKAHVIAARLPSGLERVNPIKRLISLKNDLHQIQRLLINFSLDLNLHVLANETGISLAIRILDQTSNNDLISAAVWEKFRSFLREFEIRETEFYLHYIYEKLIGKLSSKSEHSSDNESSGEYSMIFTRFTFLLDKVDDRQAQLEALAEFASHTDMPFKEQLNSIIQVRIATNCSSNPVVEKLQQLLTTSQLTPMCTRHGIKFNSKKFNAKKLLLHILQSESAVSPADSQSADIDIIMREFNYEEIVLLEQRCQVYVNDIFFKEQIISYESFRKLSQILVDVKLTNCMKIRLLKLSFSKLNHLMNQIYIWNFDTLEFISEVGYFMAEKLSEEERRNYFLELFSILRFCIRLHSCHFTTGTAIHISQILGNDLSLSDLTKQSNFTQKTIFTYFYDRFLQIISRDDCDYLQATEKIFELIQSKKNLCQESLNLKNDYFKIVVNVLVSIGNYFVSDNQSLITYAIYYGLEVIFKSIEEISSTSSDVIVCRYSHEIRNLLVMVLEIDIASNIFMVFKIFETFQKFCGIYIVNNIKYHSHKYNVLQRIVILLKSLTRNFACLHKPEYFDLQKINKTLFQEKPNLLDSITGFVPFIKSGLTVISCGDENYDNALLAFINECQLVLPLFLEHNLYISGYLSGLSLLVLLSRKASLNTYTQIDSREKICLKAWKHILKSRILDVSLLSGLILICSPGVAYREIETLIRKCSKNNKVLLSLYSIAFRVLQNYRDIDIPNRVPTLMAMQKEVHKKMWSQKLSNFNINIKSLNKNDLNKTKLEIFQHPKMSLNILEEFLECFQFKNNQYYFEYFREIIKTDLSACSSFDEYKLEIERLISRAEEIWKRIHVSNELINEIVSELGNSICNSSQYQYELLIYLYDKLNSFNGDYSWEIKIIKLLDSWRRTSPATIEEINFVQKFHTRNAEYLMKRRLPFHAVIGDNPMTVIGPELNDTNTPVWLEIYNSINQMKTNRIDIINKDMLLKTSVKNQITKFLVDQNLTNNNVHKEHVFMGEYFKYCSLWFNKILVDIPVTFDNLVMNEVFMQIIKEFQSYLVIGEQLIKIMEIALAWVDKKLESSFCVSREELLNWRLEIIENLQNLRIEEILYRYNFYKSYYLENLSDHHLLLETILNRERLNIGKVSAKRLNDVVTIVVEIAKMTNIDIEAFACQFTKVGLKLVMVTQDSYSESDGDLSMLNTSCEISIEESRLEKKEYIYVDIHELEILSLNDAIRFAVKNSLFAFIKENMLTLQQWNNIFQYFFHTFRIAEDQDVDYLCTSHWYCAFQIFLELNLMNIQKYNYTEISNNEYIIKKKLREFSLQDKTGIVKQLYSGGGGNSSEVNGNRAATPARSPNHIAVLKDIINKYPETIDFHDEHIKSIREKVFSEN
Sbjct:   37 KIDVNKVSLFRGNNVFGFSYEVNLFFKENTGNNDAFLKMIDDSIFATCSSNGRYVALLTKSKSLYLIYTPGKKIFLKQDLNLKNENIYDMKTIEIN---------------------------VITGYDNQEKSNLSQQIRLNNVTLPFTNEQSEIVDVNVARCRNYNQLLIGILYWDMFALMLVTANEESSSVLFTHSVELKDLGIDLCQNKSASISFASDEMNVFILDGKHTLWIYNFLTESICGTLTTPSDSCLRFQVSRDHSSNADTVVFINEIDNESATLDLISFPKSELISLCFSCCYLVNVHNRMDVIEKFPVANNSIIMPFHHHSDSILLIIQSLQNVAMLKSISRLDPNIKLREIIGMGNYDQARKFADIYRLDQEIIYIDELTRLIAEWDNNQQLLTPDQEIRLHCCVQQLRTYFHSDTFKQLIIITMSTFSQEQSHLSALRQQALSHISSGNGDQIYNMIVQECDRFRIFALIYPPNRYSIRCWNAFRNQDIEAIWFDAMKQADINVIKEIWNLSQHEIESIFTSSNSEFCHYLQILGITMITNQCSVTKFSAFFDWLTSEVVPKQIEIAPEQLVFLIDAIETIVRKMEATHNIDYRNECVFILERIIANVERIYLNANTPRMKAHVIAARLPSGLERVNPIKRLISLKNDLHQIQRLLINFSLDLNLHVLANETGISLAIRILDQTSNNDLISAAVWEKFRSFLREFEIRETEFYLHYIYEKLIGKLSSKSEHSSDNESSGEYSMIFTRFTFLLDKVDDRQAQLEALAEFASHTDMPFKEQLNSIIQVRIATNCSSNPVVEKLQQLLTTSQLTPMCTRHGIKFNSKKFNAKKLLLHILQSESAVSPADSQSADIDIIMREFNYEEIVLLEQRCQVYVNDIFFKEQIISYESFRKLSQILVDVKLTNCMKIRLLKLSFSKLNHLMNQIYIWNFDTLEFISEVGYFMAEKLSEEERRNYFLELFSILRFCIRLHSCHFTTGTAIHISQILGNDLSLSDLTKQSNFTQKTIFTYFYDRFLQIISRDDCDYLQATEKIFELIQSKKNLCQESLNLKNDYFKIVVNVLVSIGNYFVSDNQSLITYAIYYGLEVIFKSIEEISSTSSDVIVCRYSHEIRNLLVMVLEIDIASNIFMVFKIFETFQKFCGIYIVNNIKYHSHKYNVLQRIVILLKSLTRNFACLHKPEYFDLQKINKTLFQEKPNLLDSITGFVPFIKSGLTVISCGDENYDNALLAFINECQLVLPLFLEHNLYISGYLSGLSLLVLLSRKASLNTYTQIDSREKICLKAWKHILKSRILDVSLLSGLILICSPGVAYREIETLIRKCSKNNKVLLSLYSIAFRVLQNYRDIDIPNRVPTLMAMQKEVHKKMWSQKLSNFNINIKSLNKNDLNKTKLEIFQHPKMSLNILEEFLECFQFKNNQYYFEYFREIIKTDLSACSSFDEYKLEIERLISRAEEIWKRIHVSNELINEIVSELGNSICNSSQYQYELLIYLYDKLNSFNGDYSWEIKIIKLLDSWRRTSPATIEEINFVQKFHTRNAEYLMKRRLPFHAVIGDNPMTVIGPELNDTNTPVWLEIYNSINQMKTNRIDIINKDMLLKTSVKNQITKFLVDQNLTNNNVHKEHVFMGEYFKYCSLWFNKILVDIPVTFDNLVMNEVFMQIIKEFQSYLVIGEQLIKIMEIALAWVDKKLESSFCVSREELLNWRLEIIENLQNLRIEEILYRYNFYKSYYLENLSDHHLLLETILNRERLNIGKVSAKRLNDVVTIVVEIAKMTNIDIEAFACQFTKVGLKLVMVTQDSYSESDGDLSMLNTSCEISIEESRLEKKEYIYVDIHELEILSLNDAIRFAVKNSLFAFIKENMLTLQQWNNIFQYFFHTFRIAEDQDVDYLCTSHWYCAFQIFLELNLMNIQKYNYTEISNNEYIIKKKLREFSLQDKTGIVKQLYSGGGGNSSEVNGNRAATPARSPNHIAVLKDIINKYPETIDFHDEHIKSIREKVFSEN 2019

HSP 2 Score: 53.9138 bits (128), Expect = 1.600e-6
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:    4 MANVFKNIEYLNIVEPINDFCSAFEF 81
            MANVFKNIEYLNIVEPIND+CSAFE 
Sbjct:    1 MANVFKNIEYLNIVEPINDYCSAFEL 26
[Close]
BLAST of SMED30018210 vs. Planmine SMEST
Match: SMESG000003612.1 (SMESG000003612.1)

HSP 1 Score: 602.823 bits (1553), Expect = 0.000e+0
Identity = 301/329 (91.49%), Postives = 302/329 (91.79%), Query Frame = 2 
Query:  206 MIDDSIFATCSSNGRYVALLTKSKSLYLIYTPGKKIFLKQDLNLKNENIYDMKTIEINEVTSEIWLFARQKAIVIRNINFSHLYEVITGYDNQEKSNLSQQIRLNNVTLPFTNEQSEIVDVNVARCRNYNQLLIGILYWDMFALMLVTANEESSSVLFTHSVELKDLGIDLCQNKSASISFASDEMNVFILDGKHTLWIYNFLTESICGTLTTPSDSCLRFQVSRDHSSNADTVVFINEIDNESATLDLISFPKMDVIEKFPVANNSIIMPFHHHSDSILLIIQSLQNVAMLKSISRLDPNIKLREIIGMGNYDQARKFADIYRLDQEI 1192
            MIDDSIFATCSSNGRYVALLTKSKSLYLIYTPGKKIFLKQDLNLKNENIYDMKTIEIN                           VITGYDNQEKSNLSQQIRLNNVTLPFTNEQSEIVDVNVARCRNYNQLLIGILYWDMFALMLVTANEESSSVLFTHSVELKDLGIDLCQNKSASISFASDEMNVFILDGK+TLWIYNFLTESICGTLTTPSDSCLRFQVSRDHSSNADTVVFINEIDNESATLDLISFPKMDVIEKFPVANNSIIMPFHHHSDSILLIIQSLQNVAMLKSISRLDPNIKLREIIGMGNYDQARKFADIYRLDQEI
Sbjct:    1 MIDDSIFATCSSNGRYVALLTKSKSLYLIYTPGKKIFLKQDLNLKNENIYDMKTIEIN---------------------------VITGYDNQEKSNLSQQIRLNNVTLPFTNEQSEIVDVNVARCRNYNQLLIGILYWDMFALMLVTANEESSSVLFTHSVELKDLGIDLCQNKSASISFASDEMNVFILDGKNTLWIYNFLTESICGTLTTPSDSCLRFQVSRDHSSNADTVVFINEIDNESATLDLISFPKMDVIEKFPVANNSIIMPFHHHSDSILLIIQSLQNVAMLKSISRLDPNIKLREIIGMGNYDQARKFADIYRLDQEI 302
The following BLAST results are available for this feature:
BLAST of SMED30018210 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018210 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018210 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018210 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
kntc19.430e-620.39kinetochore associated 1 [Source:ZFIN;Acc:ZDB-GENE... [more]
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BLAST of SMED30018210 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018210 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018210 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018210 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A087TKI96.099e-1023.96Kinetochore-associated protein 1 (Fragment) OS=Ste... [more]
A0A4Y2KFP28.673e-1022.41Kinetochore-associated protein 1 OS=Araneus ventri... [more]
A0A1S3K1C51.243e-821.60kinetochore-associated protein 1-like OS=Lingula u... [more]
A0A4Z2DVT23.610e-822.05Kinetochore associated 1 OS=Schistosoma japonicum ... [more]
A0A5J4NVG07.407e-819.69Rod_C domain-containing protein (Fragment) OS=Para... [more]
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BLAST of SMED30018210 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018210 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018210 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018210 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO429861.280e-722.22Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO429821.583e-720.67Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of SMED30018210 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30018210 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000002162.11.600e-697.71SMESG000002162.1[more]
SMESG000003612.10.000e+091.49SMESG000003612.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30018210 ID=SMED30018210|Name=SMED30018210|organism=Schmidtea mediterranea sexual|type=transcript|length=6135bp
AAAATGGCTAATGTTTTTAAAAATATTGAGTATTTGAACATAGTTGAGCC
AATCAACGATTTTTGCAGCGCATTTGAATTTGAATTTTTAGAAAATAGAC
GTTAACAAAGTTAGTCTATTTCGCGGAAACAATGTTTTTGGATTTTCTTA
TGAAGTCAATCTTTTTTTCAAAGAAAACACAGGGAACAATGATGCATTCT
TAAAAATGATCGATGATAGTATTTTTGCCACCTGTTCATCAAATGGGAGA
TATGTCGCATTATTGACTAAATCTAAATCTCTTTATTTGATATATACTCC
TGGAAAAAAAATATTTTTGAAACAGGATTTAAATTTGAAGAACGAAAATA
TTTATGATATGAAAACTATTGAAATTAATGAGGTCACTTCAGAAATCTGG
TTGTTCGCTCGACAAAAAGCCATTGTGATCCGAAACATTAATTTTTCTCA
CTTATATGAAGTCATAACGGGTTACGACAATCAAGAGAAATCGAATTTGA
GTCAACAGATAAGATTAAACAATGTTACGTTACCTTTTACCAACGAGCAA
TCGGAAATAGTAGATGTCAATGTTGCCAGGTGTCGGAATTACAATCAACT
ACTGATTGGCATCTTATACTGGGATATGTTTGCCTTGATGCTCGTCACCG
CCAATGAGGAATCGAGCTCAGTTTTATTCACTCATTCAGTGGAACTGAAA
GATCTGGGAATCGATTTGTGCCAAAATAAATCGGCATCAATCAGCTTTGC
ATCGGATGAAATGAATGTATTCATTCTGGATGGAAAGCACACTTTATGGA
TTTACAATTTCCTGACTGAATCCATTTGCGGAACATTGACCACTCCATCA
GATAGTTGTTTGCGGTTCCAGGTTTCCCGAGATCATTCCTCGAATGCCGA
CACAGTTGTATTCATCAATGAGATTGATAACGAATCCGCAACTCTTGATC
TCATATCGTTTCCAAAGATGGATGTGATTGAGAAATTCCCCGTGGCCAAT
AATAGCATCATTATGCCGTTTCACCACCACTCGGATTCGATACTCCTCAT
CATTCAGTCGTTACAGAATGTTGCTATGCTGAAGAGTATCAGTAGATTGG
ATCCCAATATCAAGTTACGTGAGATTATAGGAATGGGTAATTATGATCAG
GCGAGGAAATTTGCTGACATTTACCGACTCGATCAGGAGATTATTTATAT
TGACGAGTTGACTCGGCTGATTGCAGAGTGGGATAACAATCAGCAGCTGC
TCACCCCTGACCAGGAAATCCGTCTGCATTGCTGTGTTCAACAGCTCCGA
ACTTATTTCCATTCCGATACCTTCAAGCAATTGATTATCATCACCATGTC
AACATTCTCCCAGGAGCAATCGCACCTGTCAGCCTTGAGGCAACAAGCAT
TATCGCACATTTCCAGTGGTAACGGTGATCAAATATACAATATGATTGTC
CAGGAATGCGATCGATTCCGTATATTCGCATTGATATATCCCCCGAATCG
TTACTCCATTCGGTGCTGGAACGCGTTCAGAAATCAGGACATCGAGGCCA
TTTGGTTTGATGCCATGAAGCAAGCAGATATTAATGTTATCAAGGAAATA
TGGAATCTTTCTCAGCATGAGATTGAATCGATTTTCACCTCGAGTAATTC
TGAATTCTGTCATTATCTGCAAATATTGGGAATAACAATGATAACTAACC
AATGTTCCGTGACGAAATTTAGCGCGTTTTTTGATTGGTTAACTTCCGAG
GTCGTTCCAAAACAAATCGAAATAGCTCCAGAACAATTGGTCTTTCTGAT
AGACGCGATCGAGACAATCGTACGGAAAATGGAAGCGACACATAATATCG
ATTATCGCAACGAGTGCGTTTTCATACTGGAGCGAATCATAGCAAACGTT
GAAAGGATTTATCTAAACGCCAACACACCGAGAATGAAAGCCCATGTAAT
TGCGGCACGGTTGCCAAGCGGGCTGGAACGTGTTAATCCAATAAAACGGT
TGATCTCACTGAAGAATGATCTGCATCAGATCCAAAGGCTATTGATCAAT
TTCAGCCTGGATTTGAACCTCCATGTGTTGGCAAATGAAACCGGAATCAG
TCTTGCAATTAGAATCCTCGATCAGACATCGAATAACGATCTGATTTCCG
CGGCGGTTTGGGAGAAATTCAGGAGTTTCCTCCGGGAATTTGAAATACGA
GAAACCGAGTTCTATTTGCATTATATCTACGAGAAGCTTATCGGGAAACT
CTCATCCAAATCTGAGCATTCTTCTGACAATGAGAGCAGCGGGGAATACT
CGATGATATTCACGAGATTTACGTTTCTGTTGGATAAGGTGGACGATAGA
CAGGCTCAGTTGGAGGCGTTGGCGGAGTTTGCATCTCATACCGATATGCC
GTTTAAGGAGCAATTGAATAGCATCATTCAGGTGAGGATTGCCACAAATT
GCTCCAGTAATCCCGTTGTCGAGAAACTCCAGCAGCTCTTGACTACGTCG
CAACTTACTCCAATGTGCACACGCCACGGAATAAAATTCAACTCAAAGAA
ATTCAACGCCAAGAAATTACTATTGCACATTTTGCAAAGCGAGTCTGCTG
TCAGTCCTGCTGACAGCCAATCAGCTGACATCGACATAATCATGAGGGAA
TTCAATTACGAGGAAATAGTGCTGCTGGAGCAAAGGTGTCAGGTCTATGT
CAATGATATATTCTTCAAGGAGCAAATCATTTCCTATGAAAGCTTTAGAA
AGCTCTCGCAAATCCTCGTCGATGTCAAGCTGACAAATTGCATGAAAATT
CGGCTTTTAAAGCTCTCATTCAGCAAATTGAATCACCTTATGAATCAAAT
CTACATCTGGAATTTCGACACGTTGGAGTTCATTTCCGAGGTTGGATATT
TCATGGCGGAGAAGCTTTCTGAGGAGGAGAGGAGGAACTATTTCCTGGAG
TTATTCAGTATTCTGAGGTTCTGCATCCGGTTGCATAGCTGCCATTTCAC
CACCGGAACCGCAATCCACATATCACAAATCCTCGGAAACGATCTCTCTT
TATCCGATCTGACAAAACAATCGAATTTTACACAAAAAACGATTTTCACC
TACTTTTACGATCGATTTCTCCAGATAATCTCCCGGGACGATTGCGACTA
TCTCCAAGCAACCGAGAAGATTTTTGAGTTAATTCAATCGAAGAAAAATC
TATGCCAAGAATCACTGAACTTGAAAAATGATTATTTTAAAATCGTTGTC
AATGTGCTCGTATCGATTGGAAACTATTTCGTATCCGATAATCAATCGCT
GATAACTTACGCGATTTATTATGGATTGGAAGTTATATTCAAATCAATTG
AGGAGATATCATCGACTAGTAGTGATGTCATCGTCTGTCGATATTCACAC
GAAATCCGGAATCTATTGGTTATGGTTCTAGAAATCGATATCGCGTCAAA
TATTTTTATGGTTTTCAAAATTTTTGAGACTTTTCAGAAATTTTGCGGGA
TTTATATTGTGAATAATATTAAATACCATTCACACAAATATAATGTTCTA
CAGAGAATTGTTATCCTTCTTAAATCGTTGACCAGAAATTTTGCTTGTCT
ACATAAACCGGAATATTTCGATCTACAAAAAATTAACAAAACATTATTCC
AAGAGAAACCTAATTTACTAGATTCAATTACCGGTTTCGTGCCATTTATA
AAATCTGGGTTGACTGTTATCTCGTGTGGGGATGAGAATTATGATAACGC
TTTGCTCGCATTTATAAATGAATGCCAATTGGTTTTGCCTTTATTCCTGG
AACATAATTTGTACATCAGTGGATATTTATCGGGATTATCCTTGTTGGTG
TTGTTATCCCGTAAGGCTTCTCTGAATACATATACTCAAATTGATTCCAG
GGAAAAGATTTGCCTCAAAGCCTGGAAACATATTTTAAAAAGTCGCATTT
TAGATGTTAGTTTACTGAGTGGCTTGATATTAATATGCAGCCCAGGCGTT
GCTTATCGAGAAATCGAAACATTGATACGAAAATGCTCTAAAAATAATAA
AGTGCTCCTGAGTTTGTATTCTATTGCATTTCGGGTTCTTCAGAATTATA
GAGATATTGATATACCAAATAGGGTTCCGACTTTAATGGCAATGCAGAAA
GAAGTTCACAAAAAGATGTGGTCACAGAAACTGAGCAATTTTAATATAAA
TATCAAATCACTAAACAAAAATGATTTAAACAAAACAAAATTGGAAATAT
TTCAACATCCTAAAATGTCACTAAACATCTTGGAGGAATTTCTAGAATGT
TTTCAGTTTAAGAATAATCAATATTATTTTGAGTATTTCCGCGAGATCAT
CAAAACCGATTTAAGTGCATGCAGCTCATTTGACGAGTACAAACTGGAAA
TCGAGCGATTGATCAGTCGTGCGGAAGAGATATGGAAGCGAATCCATGTT
AGCAATGAGCTCATAAATGAAATTGTCAGTGAACTGGGCAACAGCATATG
TAACAGTTCACAGTACCAATATGAGCTGTTGATCTATCTCTATGACAAAT
TGAACTCATTTAATGGGGATTATTCTTGGGAGATAAAAATTATCAAGTTA
CTCGATTCGTGGCGGAGGACATCTCCTGCTACTATCGAGGAAATCAATTT
TGTACAGAAATTCCATACGAGAAACGCGGAATATTTGATGAAAAGGCGGC
TTCCTTTTCACGCAGTTATAGGGGATAACCCCATGACTGTTATTGGTCCT
GAACTTAATGACACGAATACGCCGGTATGGCTGGAAATATATAATTCTAT
TAACCAAATGAAAACAAATCGCATTGATATAATTAACAAAGATATGCTAC
TGAAAACATCTGTGAAAAATCAAATCACAAAATTTCTCGTTGATCAAAAT
CTCACCAACAATAATGTCCACAAAGAGCACGTTTTCATGGGAGAATATTT
TAAATATTGCTCTTTGTGGTTTAATAAAATCTTGGTCGATATCCCTGTGA
CTTTCGACAACTTAGTTATGAATGAAGTGTTCATGCAAATTATTAAAGAA
TTTCAGAGTTATCTAGTAATAGGCGAGCAATTGATTAAAATAATGGAAAT
AGCTCTCGCCTGGGTCGATAAGAAACTGGAATCCAGTTTCTGTGTTTCCC
GAGAAGAGTTATTGAATTGGCGATTGGAAATCATTGAAAATCTACAAAAC
TTACGAATTGAAGAAATCTTATATAGATATAATTTCTACAAGTCGTATTA
TCTTGAGAATCTTTCAGACCATCATCTTCTTTTGGAAACGATACTCAATA
GGGAACGGTTAAATATAGGGAAGGTGTCAGCAAAACGTTTAAATGATGTT
GTTACTATTGTTGTGGAAATAGCAAAAATGACCAATATTGACATTGAGGC
ATTTGCATGCCAATTTACAAAAGTTGGACTAAAACTTGTTATGGTCACTC
AGGATTCGTATAGTGAGAGTGATGGAGACTTATCCATGTTAAATACAAGT
TGTGAAATTTCGATAGAAGAGTCAAGGCTGGAAAAGAAAGAATATATCTA
TGTGGATATTCATGAACTTGAAATTCTCTCATTGAACGATGCGATTCGAT
TTGCAGTCAAAAATAGTTTATTTGCCTTCATAAAGGAGAATATGCTGACT
CTGCAACAGTGGAATAATATTTTCCAATACTTTTTCCACACGTTCCGAAT
CGCTGAAGACCAGGATGTTGACTATCTCTGCACGAGCCATTGGTATTGTG
CTTTCCAGATCTTCCTTGAGCTGAACCTGATGAATATACAGAAATACAAT
TACACAGAAATCAGCAACAATGAGTATATTATAAAGAAGAAATTGCGCGA
ATTCTCGCTCCAGGATAAAACTGGTATAGTTAAGCAGTTATATAGCGGCG
GTGGCGGCAATTCGAGTGAAGTAAACGGAAATAGGGCAGCAACCCCAGCA
AGAAGTCCGAATCATATCGCAGTGCTCAAGGACATAATCAATAAATATCC
GGAAACTATCGATTTCCATGATGAGCATATAAAGTCGATCCGTGAAAAGG
TTTTCTCTGAAAATTAGGAGCAGCACTCAATTGGAGCGAGAAATATTGTT
TCTTTTGTTTGATTAAATAAAATATTCGATTGTTG
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protein sequence of SMED30018210-orf-1

>SMED30018210-orf-1 ID=SMED30018210-orf-1|Name=SMED30018210-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1954bp
MIDDSIFATCSSNGRYVALLTKSKSLYLIYTPGKKIFLKQDLNLKNENIY
DMKTIEINEVTSEIWLFARQKAIVIRNINFSHLYEVITGYDNQEKSNLSQ
QIRLNNVTLPFTNEQSEIVDVNVARCRNYNQLLIGILYWDMFALMLVTAN
EESSSVLFTHSVELKDLGIDLCQNKSASISFASDEMNVFILDGKHTLWIY
NFLTESICGTLTTPSDSCLRFQVSRDHSSNADTVVFINEIDNESATLDLI
SFPKMDVIEKFPVANNSIIMPFHHHSDSILLIIQSLQNVAMLKSISRLDP
NIKLREIIGMGNYDQARKFADIYRLDQEIIYIDELTRLIAEWDNNQQLLT
PDQEIRLHCCVQQLRTYFHSDTFKQLIIITMSTFSQEQSHLSALRQQALS
HISSGNGDQIYNMIVQECDRFRIFALIYPPNRYSIRCWNAFRNQDIEAIW
FDAMKQADINVIKEIWNLSQHEIESIFTSSNSEFCHYLQILGITMITNQC
SVTKFSAFFDWLTSEVVPKQIEIAPEQLVFLIDAIETIVRKMEATHNIDY
RNECVFILERIIANVERIYLNANTPRMKAHVIAARLPSGLERVNPIKRLI
SLKNDLHQIQRLLINFSLDLNLHVLANETGISLAIRILDQTSNNDLISAA
VWEKFRSFLREFEIRETEFYLHYIYEKLIGKLSSKSEHSSDNESSGEYSM
IFTRFTFLLDKVDDRQAQLEALAEFASHTDMPFKEQLNSIIQVRIATNCS
SNPVVEKLQQLLTTSQLTPMCTRHGIKFNSKKFNAKKLLLHILQSESAVS
PADSQSADIDIIMREFNYEEIVLLEQRCQVYVNDIFFKEQIISYESFRKL
SQILVDVKLTNCMKIRLLKLSFSKLNHLMNQIYIWNFDTLEFISEVGYFM
AEKLSEEERRNYFLELFSILRFCIRLHSCHFTTGTAIHISQILGNDLSLS
DLTKQSNFTQKTIFTYFYDRFLQIISRDDCDYLQATEKIFELIQSKKNLC
QESLNLKNDYFKIVVNVLVSIGNYFVSDNQSLITYAIYYGLEVIFKSIEE
ISSTSSDVIVCRYSHEIRNLLVMVLEIDIASNIFMVFKIFETFQKFCGIY
IVNNIKYHSHKYNVLQRIVILLKSLTRNFACLHKPEYFDLQKINKTLFQE
KPNLLDSITGFVPFIKSGLTVISCGDENYDNALLAFINECQLVLPLFLEH
NLYISGYLSGLSLLVLLSRKASLNTYTQIDSREKICLKAWKHILKSRILD
VSLLSGLILICSPGVAYREIETLIRKCSKNNKVLLSLYSIAFRVLQNYRD
IDIPNRVPTLMAMQKEVHKKMWSQKLSNFNINIKSLNKNDLNKTKLEIFQ
HPKMSLNILEEFLECFQFKNNQYYFEYFREIIKTDLSACSSFDEYKLEIE
RLISRAEEIWKRIHVSNELINEIVSELGNSICNSSQYQYELLIYLYDKLN
SFNGDYSWEIKIIKLLDSWRRTSPATIEEINFVQKFHTRNAEYLMKRRLP
FHAVIGDNPMTVIGPELNDTNTPVWLEIYNSINQMKTNRIDIINKDMLLK
TSVKNQITKFLVDQNLTNNNVHKEHVFMGEYFKYCSLWFNKILVDIPVTF
DNLVMNEVFMQIIKEFQSYLVIGEQLIKIMEIALAWVDKKLESSFCVSRE
ELLNWRLEIIENLQNLRIEEILYRYNFYKSYYLENLSDHHLLLETILNRE
RLNIGKVSAKRLNDVVTIVVEIAKMTNIDIEAFACQFTKVGLKLVMVTQD
SYSESDGDLSMLNTSCEISIEESRLEKKEYIYVDIHELEILSLNDAIRFA
VKNSLFAFIKENMLTLQQWNNIFQYFFHTFRIAEDQDVDYLCTSHWYCAF
QIFLELNLMNIQKYNYTEISNNEYIIKKKLREFSLQDKTGIVKQLYSGGG
GNSSEVNGNRAATPARSPNHIAVLKDIINKYPETIDFHDEHIKSIREKVF
SEN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000014zeta neoblast
PLANA:0000101muscle cell
PLANA:0000140anterior region of the whole animal
PLANA:0000420parapharyngeal region
PLANA:0000429neoblast
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR001627Semap_dom
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding