RRM domain-containing protein

Overview
NameRRM domain-containing protein
Smed IDSMED30018200
Length (bp)581
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of RRM domain-containing protein (SMED30018200) t-SNE clustered cells

Violin plots show distribution of expression levels for RRM domain-containing protein (SMED30018200) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RRM domain-containing protein (SMED30018200) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RRM domain-containing protein (SMED30018200) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30018200

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30018200 dd_Smed_v4_8256_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30018200 dd_Smed_v4_8256_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30018200 dd_Smed_v4_8256_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30018200 dd_Smed_v4_8256_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Human
Match: RBM18 (RNA binding motif protein 18 [Source:HGNC Symbol;Acc:HGNC:28413])

HSP 1 Score: 64.6994 bits (156), Expect = 1.201e-12
Identity = 31/81 (38.27%), Postives = 51/81 (62.96%), Query Frame = 3 
Query:   27 MTQSNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKIN-KLKYSNSILL 266
            + + + ++I NL  ++TE+ +LKLL +FGK+  F+F  HK   L G   GYCFV++E   +A  AI+ +N KL  S  +++
Sbjct:   21 LQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVV 101
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Human
Match: RBMX2 (RNA binding motif protein X-linked 2 [Source:HGNC Symbol;Acc:HGNC:24282])

HSP 1 Score: 48.1358 bits (113), Expect = 2.170e-6
Identity = 25/91 (27.47%), Postives = 48/91 (52.75%), Query Frame = 3 
Query:   45 IFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKINKLKYSNSIL----LAKFSKPKLFDQLE 305
            IF+  LP ++TE  ++ + SQ+G+I N N    K+    G + G+CF+ YE+    I A+   N +K     +    ++ +  PK  ++++
Sbjct:   37 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKK---TGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKDSEEID 124
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Human
Match: RBMX2 (RNA binding motif protein X-linked 2 [Source:HGNC Symbol;Acc:HGNC:24282])

HSP 1 Score: 48.1358 bits (113), Expect = 2.822e-6
Identity = 25/91 (27.47%), Postives = 48/91 (52.75%), Query Frame = 3 
Query:   45 IFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKINKLKYSNSIL----LAKFSKPKLFDQLE 305
            IF+  LP ++TE  ++ + SQ+G+I N N    K+    G + G+CF+ YE+    I A+   N +K     +    ++ +  PK  ++++
Sbjct:   38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKK---TGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKDSEEID 125
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: CG14414 (gene:FBgn0030571 transcript:FBtr0303288)

HSP 1 Score: 53.5286 bits (127), Expect = 9.468e-9
Identity = 25/91 (27.47%), Postives = 49/91 (53.85%), Query Frame = 3 
Query:   33 QSNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKINKLKYSNSILLAKFSKPKLFDQLE 305
            ++  I++ NL +++TEF +LKL+ + G I  F+   HK   + G + GY FV++     A  A+ K++     N  +  + +K   +D+ +
Sbjct:   25 EARRIWVGNLDSRITEFQLLKLMQKCGAIEKFDMLFHKGGPMVGQSRGYAFVTFAQNEGATNALLKLDGTSVGNRSIAVRLAKNIKYDETQ 115
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: rbm18 (RNA binding motif protein 18 [Source:NCBI gene;Acc:393766])

HSP 1 Score: 58.151 bits (139), Expect = 7.998e-11
Identity = 28/78 (35.90%), Postives = 48/78 (61.54%), Query Frame = 3 
Query:   36 SNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKIN-KLKYSNSILL 266
             + ++I N+  ++TE+ ++KLL +FGK+  F+F  HK   L G   GYCFV++    +A  AI+ +N KL  S  +++
Sbjct:   22 GHRLWIGNIDPKITEYHLVKLLEKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFHTKEEAERAIQCLNGKLALSKKLVV 99
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: rbm18 (RNA binding motif protein 18 [Source:NCBI gene;Acc:393766])

HSP 1 Score: 58.5362 bits (140), Expect = 1.628e-10
Identity = 28/78 (35.90%), Postives = 48/78 (61.54%), Query Frame = 3 
Query:   36 SNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKIN-KLKYSNSILL 266
             + ++I N+  ++TE+ ++KLL +FGK+  F+F  HK   L G   GYCFV++    +A  AI+ +N KL  S  +++
Sbjct:   22 GHRLWIGNIDPKITEYHLVKLLEKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFHTKEEAERAIQCLNGKLALSKKLVV 99
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: rbm18 (RNA binding motif protein 18 [Source:NCBI gene;Acc:393766])

HSP 1 Score: 58.5362 bits (140), Expect = 1.628e-10
Identity = 28/78 (35.90%), Postives = 48/78 (61.54%), Query Frame = 3 
Query:   36 SNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKIN-KLKYSNSILL 266
             + ++I N+  ++TE+ ++KLL +FGK+  F+F  HK   L G   GYCFV++    +A  AI+ +N KL  S  +++
Sbjct:   22 GHRLWIGNIDPKITEYHLVKLLEKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFHTKEEAERAIQCLNGKLALSKKLVV 99
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: elavl1b (ELAV like RNA binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-000210-17])

HSP 1 Score: 46.595 bits (109), Expect = 6.140e-6
Identity = 25/81 (30.86%), Postives = 44/81 (54.32%), Query Frame = 3 
Query:   42 NIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKINKLKYSNSILLAKFSKP 284
            N+ I+ LP  +++  +  L S  G++ +      K   + GH+LGY FV+Y N SDA  AI  +N L+  +  +   +++P
Sbjct:   57 NLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDK---MAGHSLGYGFVNYVNPSDAERAINTLNGLRLQSKTIKVSYARP 134
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: elavl1b (ELAV like RNA binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-000210-17])

HSP 1 Score: 46.595 bits (109), Expect = 6.366e-6
Identity = 25/81 (30.86%), Postives = 44/81 (54.32%), Query Frame = 3 
Query:   42 NIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKINKLKYSNSILLAKFSKP 284
            N+ I+ LP  +++  +  L S  G++ +      K   + GH+LGY FV+Y N SDA  AI  +N L+  +  +   +++P
Sbjct:   56 NLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDK---MAGHSLGYGFVNYVNPSDAERAINTLNGLRLQSKTIKVSYARP 133
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: rbm18 (RNA binding motif protein 18 [Source:NCBI gene;Acc:496464])

HSP 1 Score: 62.003 bits (149), Expect = 1.161e-11
Identity = 27/70 (38.57%), Postives = 44/70 (62.86%), Query Frame = 3 
Query:   27 MTQSNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKIN 236
            +   + ++I N+  ++TE+ +LKLL +FGK+  F+F  HK   L G   GYCFV++E  ++A  AI  +N
Sbjct:   21 LQDGHRLWIGNVDPKITEYHLLKLLQKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFETKAEAERAIHCLN 90
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: rbm18 (RNA binding motif protein 18 [Source:NCBI gene;Acc:496464])

HSP 1 Score: 56.225 bits (134), Expect = 2.335e-9
Identity = 23/57 (40.35%), Postives = 37/57 (64.91%), Query Frame = 3 
Query:   27 MTQSNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYE 197
            +   + ++I N+  ++TE+ +LKLL +FGK+  F+F  HK   L G   GYCFV++E
Sbjct:   21 LQDGHRLWIGNVDPKITEYHLLKLLQKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFE 77
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: rbmx2 (RNA binding motif protein X-linked 2 [Source:NCBI gene;Acc:549695])

HSP 1 Score: 46.9802 bits (110), Expect = 5.764e-6
Identity = 22/91 (24.18%), Postives = 47/91 (51.65%), Query Frame = 3 
Query:   45 IFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKINKLKYSNSIL----LAKFSKPKLFDQLE 305
            +FI  LP +++E  ++ + SQ+G++ N N    K     G + G+CF+ +E+    + A+  +N +K     +    +A +  PK  + ++
Sbjct:   57 LFIGGLPYELSEGDIICVFSQYGEVVNINLVRDKS---SGRSRGFCFLCFEDQRSTVLAVDNLNGIKVKGRTIRVDHVANYRPPKDAEDID 144
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: rbmx2 (RNA binding motif protein X-linked 2 [Source:NCBI gene;Acc:549695])

HSP 1 Score: 46.9802 bits (110), Expect = 5.919e-6
Identity = 22/91 (24.18%), Postives = 47/91 (51.65%), Query Frame = 3 
Query:   45 IFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKINKLKYSNSIL----LAKFSKPKLFDQLE 305
            +FI  LP +++E  ++ + SQ+G++ N N    K     G + G+CF+ +E+    + A+  +N +K     +    +A +  PK  + ++
Sbjct:   37 LFIGGLPYELSEGDIICVFSQYGEVVNINLVRDKS---SGRSRGFCFLCFEDQRSTVLAVDNLNGIKVKGRTIRVDHVANYRPPKDAEDID 124
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: rbmx2 (RNA binding motif protein X-linked 2 [Source:NCBI gene;Acc:549695])

HSP 1 Score: 46.595 bits (109), Expect = 8.523e-6
Identity = 22/91 (24.18%), Postives = 47/91 (51.65%), Query Frame = 3 
Query:   45 IFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKINKLKYSNSIL----LAKFSKPKLFDQLE 305
            +FI  LP +++E  ++ + SQ+G++ N N    K     G + G+CF+ +E+    + A+  +N +K     +    +A +  PK  + ++
Sbjct:   60 LFIGGLPYELSEGDIICVFSQYGEVVNINLVRDKS---SGRSRGFCFLCFEDQRSTVLAVDNLNGIKVKGRTIRVDHVANYRPPKDAEDID 147
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Rbm18 (RNA binding motif protein 18 [Source:MGI Symbol;Acc:MGI:1915139])

HSP 1 Score: 64.6994 bits (156), Expect = 8.248e-13
Identity = 31/81 (38.27%), Postives = 51/81 (62.96%), Query Frame = 3 
Query:   27 MTQSNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKIN-KLKYSNSILL 266
            + + + ++I NL  ++TE+ +LKLL +FGK+  F+F  HK   L G   GYCFV++E   +A  AI+ +N KL  S  +++
Sbjct:   21 LQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVV 101
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Rbmx2 (RNA binding motif protein, X-linked 2 [Source:MGI Symbol;Acc:MGI:1919414])

HSP 1 Score: 46.595 bits (109), Expect = 7.067e-6
Identity = 22/67 (32.84%), Postives = 38/67 (56.72%), Query Frame = 3 
Query:   45 IFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKINKLK 245
            IF+  LP ++TE  ++ + SQ+G+I N N    K+    G + G+CF+ YE+    + A+   N +K
Sbjct:   38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKK---TGKSKGFCFLCYEDQRSTVLAVDNFNGIK 101
[Close]
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q5R6W3|RBM18_PONAB (Probable RNA-binding protein 18 OS=Pongo abelii OX=9601 GN=RBM18 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 5.770e-12
Identity = 31/81 (38.27%), Postives = 51/81 (62.96%), Query Frame = 3 
Query:   27 MTQSNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKIN-KLKYSNSILL 266
            + + + ++I NL  ++TE+ +LKLL +FGK+  F+F  HK   L G   GYCFV++E   +A  AI+ +N KL  S  +++
Sbjct:   21 LQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVV 101
[Close]
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9CR83|RBM18_MOUSE (Probable RNA-binding protein 18 OS=Mus musculus OX=10090 GN=Rbm18 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 5.770e-12
Identity = 31/81 (38.27%), Postives = 51/81 (62.96%), Query Frame = 3 
Query:   27 MTQSNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKIN-KLKYSNSILL 266
            + + + ++I NL  ++TE+ +LKLL +FGK+  F+F  HK   L G   GYCFV++E   +A  AI+ +N KL  S  +++
Sbjct:   21 LQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVV 101
[Close]
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q96H35|RBM18_HUMAN (Probable RNA-binding protein 18 OS=Homo sapiens OX=9606 GN=RBM18 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 5.770e-12
Identity = 31/81 (38.27%), Postives = 51/81 (62.96%), Query Frame = 3 
Query:   27 MTQSNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKIN-KLKYSNSILL 266
            + + + ++I NL  ++TE+ +LKLL +FGK+  F+F  HK   L G   GYCFV++E   +A  AI+ +N KL  S  +++
Sbjct:   21 LQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVV 101
[Close]
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q3ZCC5|RBM18_BOVIN (Probable RNA-binding protein 18 OS=Bos taurus OX=9913 GN=RBM18 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 7.251e-11
Identity = 29/81 (35.80%), Postives = 50/81 (61.73%), Query Frame = 3 
Query:   27 MTQSNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKIN-KLKYSNSILL 266
            + + + ++I NL  ++TE+ +L+LL +FG +  F+F  HK   L G   GYCFV++E   +A  AI+ +N KL  S  +++
Sbjct:   21 LQEGHRLWIGNLDPKITEYHLLRLLQKFGTVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVV 101
[Close]
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q66J99|RBM18_XENLA (Probable RNA-binding protein 18 OS=Xenopus laevis OX=8355 GN=rbm18 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 9.651e-11
Identity = 27/70 (38.57%), Postives = 44/70 (62.86%), Query Frame = 3 
Query:   27 MTQSNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKIN 236
            +   + ++I N+  ++TE+ +LKLL +FGK+  F+F  HK   L G   GYCFV++E  ++A  AI  +N
Sbjct:   21 LQDGHRLWIGNVDPKITEYHLLKLLQKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFETKAEAERAIHCLN 90
[Close]
BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A0R3T8X8 (RRM domain-containing protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS3515 PE=4 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 8.253e-19
Identity = 43/94 (45.74%), Postives = 66/94 (70.21%), Query Frame = 3 
Query:   45 IFISNLPNQVTEFGVLKLLSQFGKITNFNFPV-HKERRLRGHTLGYCFVSYENLSDAITAIKKINKLKYSNSILLAKFSKP--KLFDQLEFSYE 317
            I+ISNLP + TE+ +L+L+  FGKI +FNFPV H    L+G TLGYCFV+Y++   A+ A+K +N+ +++ SIL A+ ++P  ++ DQL    E
Sbjct:   14 IWISNLPPKSTEYAILQLVRPFGKILDFNFPVNHCSGPLQGSTLGYCFVTYDSDQSALNAMKSLNRREFAGSILSAQRARPTREILDQLRLERE 107
[Close]
BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A0R3W827 (RRM domain-containing protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS6477 PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.298e-16
Identity = 36/89 (40.45%), Postives = 58/89 (65.17%), Query Frame = 3 
Query:   21 QFMTQSNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERR-LRGHTLGYCFVSYENLSDAITAIKKINKLKYSNSILLAKFSKP 284
            Q       ++++NLP++ TEF VL+L+  FGKI +FNFPVH+    L+G TLGYCFV++     A+ A++ +N   +  S+L A+ ++P
Sbjct:    7 QGTVDPRRVWLANLPSKSTEFAVLQLVRPFGKILDFNFPVHQSGGPLQGSTLGYCFVTFAAEECALKAMESLNGRPFCGSVLSAQRARP 95
[Close]
BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A5K4F9N5 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.170e-15
Identity = 34/82 (41.46%), Postives = 58/82 (70.73%), Query Frame = 3 
Query:   39 NNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKINKLKYSNSILLAKFSKP 284
            + I++  LP ++TEF VL+L  QFG++++F+FPVHK   ++G T+GYCF++Y ++ DA  A K +N L +    L+A+ ++P
Sbjct:   24 HRIWLGCLPKRITEFSVLQLAKQFGELSDFHFPVHKTGDMQGSTVGYCFLTYRSVDDAKKAWKVLNGLDFHGHTLVARPARP 105
[Close]
BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A5J4NNR6 (RRM domain-containing protein OS=Paragonimus westermani OX=34504 GN=DEA37_0009320 PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.368e-15
Identity = 33/80 (41.25%), Postives = 56/80 (70.00%), Query Frame = 3 
Query:   45 IFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKINKLKYSNSILLAKFSKP 284
            +++  LP ++TE+ VL+L  QFG +++F+FPVHK    RG T+GYCF++Y++   A  A+K ++KL     IL+A+ ++P
Sbjct:  192 VWLGGLPPRITEYAVLQLTRQFGPLSDFHFPVHKVGDTRGSTVGYCFITYKDAQSAAKALKALDKLNLHGHILIARPARP 271
[Close]
BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A4Z2CQS2 (Putative RNA-binding protein OS=Schistosoma japonicum OX=6182 GN=EWB00_008407 PE=4 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.389e-15
Identity = 34/82 (41.46%), Postives = 58/82 (70.73%), Query Frame = 3 
Query:   39 NNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKINKLKYSNSILLAKFSKP 284
            + I++  LP ++TEF VL+L  QFG +++F+FPVHK   L+G T+GYCF++Y+++ DA  A K ++ L +    L+A+ ++P
Sbjct:   25 HRIWLGRLPTRITEFAVLQLAKQFGDLSDFHFPVHKTGDLQGSTVGYCFLTYKSVDDATKARKVLDGLNFHGYTLVARPARP 106
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: rbm18 (RNA binding motif protein 18 [Source:NCBI gene;Acc:103038787])

HSP 1 Score: 59.3066 bits (142), Expect = 7.020e-11
Identity = 28/79 (35.44%), Postives = 49/79 (62.03%), Query Frame = 3 
Query:   33 QSNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKIN-KLKYSNSILL 266
            + + ++I N+  ++TE+ ++KLL +FGK+  F+F  HK   L G   GYCFV++    +A  AI+ +N KL  S  +++
Sbjct:   21 EGHRLWIGNIDPKITEYHLVKLLEKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFHTKEEAERAIQCLNGKLALSKKLVV 99
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000007249.2 (RNA binding motif protein X-linked 2 [Source:NCBI gene;Acc:103031183])

HSP 1 Score: 50.447 bits (119), Expect = 2.786e-7
Identity = 28/85 (32.94%), Postives = 43/85 (50.59%), Query Frame = 3 
Query:   45 IFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKINKLKYSNSIL----LAKFSKPK 287
            IFI   P ++TE  V+ + SQ+G+I N N    K+    G + G+CF+ YE+    I A+   N +K     L    +A +  PK
Sbjct:   38 IFIGGFPYELTEGDVICIFSQYGEIANINLVRDKK---TGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTLRVDHVANYRPPK 119
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000048197.1 (RNA binding motif protein X-linked 2 [Source:NCBI gene;Acc:103031183])

HSP 1 Score: 50.447 bits (119), Expect = 2.891e-7
Identity = 28/91 (30.77%), Postives = 46/91 (50.55%), Query Frame = 3 
Query:   45 IFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKINKLKYSNSIL----LAKFSKPKLFDQLE 305
            IFI   P ++TE  V+ + SQ+G+I N N    K+    G + G+CF+ YE+    I A+   N +K     L    +A +  PK  + ++
Sbjct:   37 IFIGGFPYELTEGDVICIFSQYGEIANINLVRDKK---TGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTLRVDHVANYRPPKDSEDID 124
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: elavl1b (ELAV-like protein 1 [Source:NCBI gene;Acc:103037033])

HSP 1 Score: 48.1358 bits (113), Expect = 1.738e-6
Identity = 25/81 (30.86%), Postives = 44/81 (54.32%), Query Frame = 3 
Query:   42 NIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKINKLKYSNSILLAKFSKP 284
            N+ ++ LP  +T+  +  L S  G++ +      K   + GH+LGY FV+Y N SDA  AI  +N L+  +  +   +++P
Sbjct:   35 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDK---MGGHSLGYGFVNYVNTSDAERAISTLNGLRLQSKTIKVSYARP 112
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: elavl1b (ELAV-like protein 1 [Source:NCBI gene;Acc:103037033])

HSP 1 Score: 47.7506 bits (112), Expect = 1.897e-6
Identity = 25/81 (30.86%), Postives = 44/81 (54.32%), Query Frame = 3 
Query:   42 NIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKINKLKYSNSILLAKFSKP 284
            N+ ++ LP  +T+  +  L S  G++ +      K   + GH+LGY FV+Y N SDA  AI  +N L+  +  +   +++P
Sbjct:   59 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDK---MGGHSLGYGFVNYVNTSDAERAISTLNGLRLQSKTIKVSYARP 136
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000693.1 (pep scaffold:Pmarinus_7.0:GL482295:3840:13178:1 gene:ENSPMAG00000000630.1 transcript:ENSPMAT00000000693.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 66.2402 bits (160), Expect = 2.641e-14
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 3 
Query:   36 SNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKIN-KLKYSNSILL----AKFSK 281
            S+ ++I N+  +VTEF +LK+L +FG I  F+F  HK   L G   GYCFV+YE   +A  AI+ +N KL  S  +++    AKF++
Sbjct:   25 SHRLWIGNIDLRVTEFHLLKILQKFGHIKEFDFLFHKSGPLEGQPRGYCFVNYETRPEAERAIQHLNGKLALSRPLVVRWAHAKFAQ 111
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Match: EDO45951 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RRH3])

HSP 1 Score: 60.077 bits (144), Expect = 1.454e-11
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 3 
Query:   45 IFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKINK 239
            ++I NL  +++EF +LK+L QFG+I +F F  H     RG   GYCFV ++   DA  A++ +NK
Sbjct:   25 LWIGNLDKRLSEFNILKILQQFGEIEHFQFLFHGNGPNRGEPRGYCFVEFKKKEDARKALRGLNK 89
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Match: EDO34879 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SN30])

HSP 1 Score: 46.595 bits (109), Expect = 1.979e-6
Identity = 23/84 (27.38%), Postives = 44/84 (52.38%), Query Frame = 3 
Query:   33 QSNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKINKLKYSNSILLAKFSKP 284
            +  N+ I+ +P  +++  + K+    G +T+         R  G +LGY FV+Y+N  DA  A++++N  +  N  L   F++P
Sbjct:    8 ERTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKL---IRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFARP 88
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: rbm18 (RNA binding motif protein 18 [Source:NCBI gene;Acc:101156904])

HSP 1 Score: 59.3066 bits (142), Expect = 9.069e-11
Identity = 28/78 (35.90%), Postives = 48/78 (61.54%), Query Frame = 3 
Query:   36 SNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKIN-KLKYSNSILL 266
             N ++I N+  ++TE+ ++KLL +FG++  F+F  HK   L G   GYCFV++    +A  AI+ +N KL  S  +++
Sbjct:   22 GNRLWIGNIDPKITEYHLIKLLERFGQVKQFDFLFHKSGPLEGQPRGYCFVNFSTREEAERAIQCLNGKLALSKKLVV 99
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: rbm18 (RNA binding motif protein 18 [Source:NCBI gene;Acc:101156904])

HSP 1 Score: 59.3066 bits (142), Expect = 9.288e-11
Identity = 28/78 (35.90%), Postives = 48/78 (61.54%), Query Frame = 3 
Query:   36 SNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKIN-KLKYSNSILL 266
             N ++I N+  ++TE+ ++KLL +FG++  F+F  HK   L G   GYCFV++    +A  AI+ +N KL  S  +++
Sbjct:   22 GNRLWIGNIDPKITEYHLIKLLERFGQVKQFDFLFHKSGPLEGQPRGYCFVNFSTREEAERAIQCLNGKLALSKKLVV 99
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: rbm18 (RNA binding motif protein 18 [Source:NCBI gene;Acc:101156904])

HSP 1 Score: 58.9214 bits (141), Expect = 1.405e-10
Identity = 28/78 (35.90%), Postives = 48/78 (61.54%), Query Frame = 3 
Query:   36 SNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKIN-KLKYSNSILL 266
             N ++I N+  ++TE+ ++KLL +FG++  F+F  HK   L G   GYCFV++    +A  AI+ +N KL  S  +++
Sbjct:   52 GNRLWIGNIDPKITEYHLIKLLERFGQVKQFDFLFHKSGPLEGQPRGYCFVNFSTREEAERAIQCLNGKLALSKKLVV 129
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: rbm18 (RNA binding motif protein 18 [Source:NCBI gene;Acc:101156904])

HSP 1 Score: 52.7582 bits (125), Expect = 2.207e-8
Identity = 21/53 (39.62%), Postives = 35/53 (66.04%), Query Frame = 3 
Query:   36 SNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSY 194
             N ++I N+  ++TE+ ++KLL +FG++  F+F  HK   L G   GYCFV++
Sbjct:   22 GNRLWIGNIDPKITEYHLIKLLERFGQVKQFDFLFHKSGPLEGQPRGYCFVNF 74
[Close]
BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000063924.1 (SMESG000063924.1)

HSP 1 Score: 46.595 bits (109), Expect = 3.444e-6
Identity = 22/73 (30.14%), Postives = 39/73 (53.42%), Query Frame = 3 
Query:   15 TSQFMTQSNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKI 233
            T  +   SN + I  L  + TE  + K+  ++GKI +    +++E    G + GY F+ YE++  AI A+K+ 
Sbjct:  147 TRDYEKPSNTVGIFGLSRKTTEDALWKIFDKYGKINSLKLVMNRET---GESRGYSFIEYEDIDSAIQALKEC 216
[Close]
BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000063924.1 (SMESG000063924.1)

HSP 1 Score: 46.595 bits (109), Expect = 3.600e-6
Identity = 22/73 (30.14%), Postives = 39/73 (53.42%), Query Frame = 3 
Query:   15 TSQFMTQSNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKI 233
            T  +   SN + I  L  + TE  + K+  ++GKI +    +++E    G + GY F+ YE++  AI A+K+ 
Sbjct:  147 TRDYEKPSNTVGIFGLSRKTTEDALWKIFDKYGKINSLKLVMNRET---GESRGYSFIEYEDIDSAIQALKEC 216
[Close]
BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000050981.1 (SMESG000050981.1)

HSP 1 Score: 45.4394 bits (106), Expect = 6.295e-6
Identity = 24/87 (27.59%), Postives = 41/87 (47.13%), Query Frame = 3 
Query:   45 IFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLGYCFVSYENLSDAITAIKKINKLKYSNSIL----LAKFSKPKLF 293
            IF+  L  + +E  ++ + SQ+G+I N N       R  G + G+CF+ YE+      A+   N +K    +L    +  +  P LF
Sbjct:   36 IFVGGLKFEYSEGDIICVFSQYGEIVNINMARD---RYTGKSKGFCFICYEDQRSTTLAVDNFNGIKLGGRVLKVDHVEDYKLPPLF 119
The following BLAST results are available for this feature:
BLAST of RRM domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3
Match NameE-valueIdentityDescription
RBM181.201e-1238.27RNA binding motif protein 18 [Source:HGNC Symbol;A... [more]
RBMX22.170e-627.47RNA binding motif protein X-linked 2 [Source:HGNC ... [more]
RBMX22.822e-627.47RNA binding motif protein X-linked 2 [Source:HGNC ... [more]
back to top
BLAST of RRM domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of RRM domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
CG144149.468e-927.47gene:FBgn0030571 transcript:FBtr0303288[more]
back to top
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbm187.998e-1135.90RNA binding motif protein 18 [Source:NCBI gene;Acc... [more]
rbm181.628e-1035.90RNA binding motif protein 18 [Source:NCBI gene;Acc... [more]
rbm181.628e-1035.90RNA binding motif protein 18 [Source:NCBI gene;Acc... [more]
elavl1b6.140e-630.86ELAV like RNA binding protein 1b [Source:ZFIN;Acc:... [more]
elavl1b6.366e-630.86ELAV like RNA binding protein 1b [Source:ZFIN;Acc:... [more]
back to top
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbm181.161e-1138.57RNA binding motif protein 18 [Source:NCBI gene;Acc... [more]
rbm182.335e-940.35RNA binding motif protein 18 [Source:NCBI gene;Acc... [more]
rbmx25.764e-624.18RNA binding motif protein X-linked 2 [Source:NCBI ... [more]
rbmx25.919e-624.18RNA binding motif protein X-linked 2 [Source:NCBI ... [more]
rbmx28.523e-624.18RNA binding motif protein X-linked 2 [Source:NCBI ... [more]
back to top
BLAST of RRM domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Rbm188.248e-1338.27RNA binding motif protein 18 [Source:MGI Symbol;Ac... [more]
Rbmx27.067e-632.84RNA binding motif protein, X-linked 2 [Source:MGI ... [more]
back to top
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q5R6W3|RBM18_PONAB5.770e-1238.27Probable RNA-binding protein 18 OS=Pongo abelii OX... [more]
sp|Q9CR83|RBM18_MOUSE5.770e-1238.27Probable RNA-binding protein 18 OS=Mus musculus OX... [more]
sp|Q96H35|RBM18_HUMAN5.770e-1238.27Probable RNA-binding protein 18 OS=Homo sapiens OX... [more]
sp|Q3ZCC5|RBM18_BOVIN7.251e-1135.80Probable RNA-binding protein 18 OS=Bos taurus OX=9... [more]
sp|Q66J99|RBM18_XENLA9.651e-1138.57Probable RNA-binding protein 18 OS=Xenopus laevis ... [more]
back to top
BLAST of RRM domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0R3T8X88.253e-1945.74RRM domain-containing protein OS=Rodentolepis nana... [more]
A0A0R3W8274.298e-1640.45RRM domain-containing protein OS=Taenia asiatica O... [more]
A0A5K4F9N51.170e-1541.46Uncharacterized protein OS=Schistosoma mansoni OX=... [more]
A0A5J4NNR61.368e-1541.25RRM domain-containing protein OS=Paragonimus weste... [more]
A0A4Z2CQS21.389e-1541.46Putative RNA-binding protein OS=Schistosoma japoni... [more]
back to top
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbm187.020e-1135.44RNA binding motif protein 18 [Source:NCBI gene;Acc... [more]
ENSAMXT00000007249.22.786e-732.94RNA binding motif protein X-linked 2 [Source:NCBI ... [more]
ENSAMXT00000048197.12.891e-730.77RNA binding motif protein X-linked 2 [Source:NCBI ... [more]
elavl1b1.738e-630.86ELAV-like protein 1 [Source:NCBI gene;Acc:10303703... [more]
elavl1b1.897e-630.86ELAV-like protein 1 [Source:NCBI gene;Acc:10303703... [more]
back to top
BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSPMAT00000000693.12.641e-1441.38pep scaffold:Pmarinus_7.0:GL482295:3840:13178:1 ge... [more]
back to top
BLAST of RRM domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO459511.454e-1141.54Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO348791.979e-627.38Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4
Match NameE-valueIdentityDescription
rbm189.069e-1135.90RNA binding motif protein 18 [Source:NCBI gene;Acc... [more]
rbm189.288e-1135.90RNA binding motif protein 18 [Source:NCBI gene;Acc... [more]
rbm181.405e-1035.90RNA binding motif protein 18 [Source:NCBI gene;Acc... [more]
rbm182.207e-839.62RNA binding motif protein 18 [Source:NCBI gene;Acc... [more]
back to top
BLAST of RRM domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000063924.13.444e-630.14SMESG000063924.1[more]
SMESG000063924.13.600e-630.14SMESG000063924.1[more]
SMESG000050981.16.295e-627.59SMESG000050981.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30018200 ID=SMED30018200|Name=RRM domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=581bp
GTTTGTTTAAATAAACCTCACAGTTTATGACTCAAAGCAATAATATTTTT
ATTTCTAATTTACCTAATCAAGTAACAGAATTTGGCGTTTTGAAGTTATT
ATCTCAATTTGGGAAGATAACAAATTTTAATTTCCCTGTTCACAAGGAAA
GAAGACTTAGAGGTCATACATTAGGATATTGTTTTGTTTCATATGAAAAT
CTGTCTGATGCAATTACAGCCATTAAAAAAATTAATAAATTGAAATATTC
TAATTCTATTCTGCTTGCAAAATTTTCAAAACCCAAATTATTCGATCAAC
TAGAATTTTCATATGAATACGATGAAAAAATTATTTCTTCAGAACTTGAA
AAAGAAGAAGGAATTATTGATAAAGAAAAATTATCGAAAATTCTTGAAAA
ATCAAAAAAAATTCAAACTGAAAAGAAACTAGTTGATAAAAGTAAAAATA
ATATAAAGGCTAAAAAAACGATAAATCCAGTTAAGAGCTTTAACGAAAAA
CGTATTCAAATTAAACAAATTGAAGAAGCATTGAAAAAATATCAATCATT
TTAACCTGTTTTTACGAAATTTATTGTGAAA
back to top

protein sequence of SMED30018200-orf-1

>SMED30018200-orf-1 ID=SMED30018200-orf-1|Name=SMED30018200-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=176bp
MTQSNNIFISNLPNQVTEFGVLKLLSQFGKITNFNFPVHKERRLRGHTLG
YCFVSYENLSDAITAIKKINKLKYSNSILLAKFSKPKLFDQLEFSYEYDE
KIISSELEKEEGIIDKEKLSKILEKSKKIQTEKKLVDKSKNNIKAKKTIN
PVKSFNEKRIQIKQIEEALKKYQSF*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 6..82
e-value: 1.4E-12
score: 57.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 7..77
e-value: 9.1E-13
score: 47.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 5..86
score: 13.328
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 1..89
e-value: 1.3E-15
score: 59.6
NoneNo IPR availablePANTHERPTHR21245:SF2RNA-BINDING PROTEIN 18-RELATEDcoord: 5..159
NoneNo IPR availablePANTHERPTHR21245FAMILY NOT NAMEDcoord: 5..159
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 3..90