MADS-box domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30018122 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 11
Homology
BLAST of MADS-box domain-containing protein vs. Ensembl Human
Match: MEF2A (myocyte enhancer factor 2A [Source:HGNC Symbol;Acc:HGNC:6993]) HSP 1 Score: 56.225 bits (134), Expect = 9.608e-10 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Human
Match: MEF2C (myocyte enhancer factor 2C [Source:HGNC Symbol;Acc:HGNC:6996]) HSP 1 Score: 56.6102 bits (135), Expect = 1.126e-9 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Human
Match: MEF2A (myocyte enhancer factor 2A [Source:HGNC Symbol;Acc:HGNC:6993]) HSP 1 Score: 56.225 bits (134), Expect = 1.392e-9 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Human
Match: MEF2C (myocyte enhancer factor 2C [Source:HGNC Symbol;Acc:HGNC:6996]) HSP 1 Score: 56.6102 bits (135), Expect = 2.136e-9 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Human
Match: MEF2D (myocyte enhancer factor 2D [Source:HGNC Symbol;Acc:HGNC:6997]) HSP 1 Score: 56.225 bits (134), Expect = 4.349e-9 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Celegans
Match: mef-2 (Related to vertebrate MEF2 transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9U325]) HSP 1 Score: 58.9214 bits (141), Expect = 2.594e-9 Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I+D+R R TF KR+ GL KKA EL+ LC I++I+ N Sbjct: 1 MGRKKIQITRIQDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIVFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Celegans
Match: unc-120 (pep chromosome:WBcel235:I:8460225:8463015:1 gene:WBGene00006844.1 transcript:D1081.2.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:unc-120) HSP 1 Score: 48.521 bits (114), Expect = 4.789e-6 Identity = 22/59 (37.29%), Postives = 37/59 (62.71%), Query Frame = 2 Query: 110 GRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVNKDL-VYKFSDP 283 GR KI M +I + +R +TF KR+ G+ KKA EL+ L G + +++ ++ VY ++ P Sbjct: 46 GRVKIKMEYINNKLRRYTTFSKRKTGIMKKAFELSTLTGTQVMLLVASETGHVYTYATP 104
BLAST of MADS-box domain-containing protein vs. Ensembl Fly
Match: Mef2 (gene:FBgn0011656 transcript:FBtr0088446) HSP 1 Score: 56.9954 bits (136), Expect = 2.089e-8 Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVII 247 MGRKKI ++ I D+R R TF+KR+ G+ KKA EL+ LC I++II Sbjct: 1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALII 47
BLAST of MADS-box domain-containing protein vs. Ensembl Fly
Match: Mef2 (gene:FBgn0011656 transcript:FBtr0088444) HSP 1 Score: 56.6102 bits (135), Expect = 2.262e-8 Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVII 247 MGRKKI ++ I D+R R TF+KR+ G+ KKA EL+ LC I++II Sbjct: 1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALII 47
BLAST of MADS-box domain-containing protein vs. Ensembl Fly
Match: Mef2 (gene:FBgn0011656 transcript:FBtr0088443) HSP 1 Score: 56.6102 bits (135), Expect = 2.349e-8 Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVII 247 MGRKKI ++ I D+R R TF+KR+ G+ KKA EL+ LC I++II Sbjct: 1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALII 47
BLAST of MADS-box domain-containing protein vs. Ensembl Fly
Match: Mef2 (gene:FBgn0011656 transcript:FBtr0088445) HSP 1 Score: 56.6102 bits (135), Expect = 2.382e-8 Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVII 247 MGRKKI ++ I D+R R TF+KR+ G+ KKA EL+ LC I++II Sbjct: 1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALII 47
BLAST of MADS-box domain-containing protein vs. Ensembl Fly
Match: Mef2 (gene:FBgn0011656 transcript:FBtr0088447) HSP 1 Score: 56.6102 bits (135), Expect = 2.442e-8 Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVII 247 MGRKKI ++ I D+R R TF+KR+ G+ KKA EL+ LC I++II Sbjct: 1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALII 47
BLAST of MADS-box domain-containing protein vs. Ensembl Zebrafish
Match: mef2d (myocyte enhancer factor 2d [Source:ZFIN;Acc:ZDB-GENE-990415-164]) HSP 1 Score: 56.9954 bits (136), Expect = 3.875e-10 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Zebrafish
Match: mef2cb (myocyte enhancer factor 2cb [Source:ZFIN;Acc:ZDB-GENE-040901-7]) HSP 1 Score: 56.225 bits (134), Expect = 6.642e-10 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Zebrafish
Match: mef2ca (myocyte enhancer factor 2ca [Source:ZFIN;Acc:ZDB-GENE-980526-253]) HSP 1 Score: 55.8398 bits (133), Expect = 1.126e-9 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQIARIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Zebrafish
Match: mef2ca (myocyte enhancer factor 2ca [Source:ZFIN;Acc:ZDB-GENE-980526-253]) HSP 1 Score: 55.8398 bits (133), Expect = 1.126e-9 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQIARIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Zebrafish
Match: mef2ca (myocyte enhancer factor 2ca [Source:ZFIN;Acc:ZDB-GENE-980526-253]) HSP 1 Score: 55.8398 bits (133), Expect = 1.126e-9 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQIARIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Xenopus
Match: mef2a (myocyte enhancer factor 2A [Source:NCBI gene;Acc:100216045]) HSP 1 Score: 56.225 bits (134), Expect = 4.535e-9 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Xenopus
Match: mef2a (myocyte enhancer factor 2A [Source:NCBI gene;Acc:100216045]) HSP 1 Score: 56.6102 bits (135), Expect = 1.069e-8 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Xenopus
Match: mef2c (MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C) [Source:NCBI gene;Acc:100127198]) HSP 1 Score: 57.3806 bits (137), Expect = 1.938e-8 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Xenopus
Match: mef2d (myocyte enhancer factor 2D [Source:NCBI gene;Acc:780389]) HSP 1 Score: 57.7658 bits (138), Expect = 1.989e-8 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Xenopus
Match: mef2c (MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C) [Source:NCBI gene;Acc:100127198]) HSP 1 Score: 57.7658 bits (138), Expect = 1.999e-8 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Mouse
Match: Mef2c (myocyte enhancer factor 2C [Source:MGI Symbol;Acc:MGI:99458]) HSP 1 Score: 56.6102 bits (135), Expect = 1.041e-9 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Mouse
Match: Mef2c (myocyte enhancer factor 2C [Source:MGI Symbol;Acc:MGI:99458]) HSP 1 Score: 56.6102 bits (135), Expect = 1.331e-9 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Mouse
Match: Mef2a (myocyte enhancer factor 2A [Source:MGI Symbol;Acc:MGI:99532]) HSP 1 Score: 55.8398 bits (133), Expect = 2.038e-9 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Mouse
Match: Mef2c (myocyte enhancer factor 2C [Source:MGI Symbol;Acc:MGI:99458]) HSP 1 Score: 55.8398 bits (133), Expect = 3.156e-9 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Mouse
Match: Mef2c (myocyte enhancer factor 2C [Source:MGI Symbol;Acc:MGI:99458]) HSP 1 Score: 55.8398 bits (133), Expect = 3.541e-9 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. UniProt/SwissProt
Match: sp|Q12224|RLM1_YEAST (Transcription factor RLM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RLM1 PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 1.731e-10 Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVNK-DLVYKFS 277 MGR+KI + I DDR RA TF KR+ GLFKKA EL+ LC V I+VII+ + Y+FS Sbjct: 1 MGRRKIEIQRISDDRNRAVTFIKRKAGLFKKAHELSVLCQVDIAVIILGSNNTFYEFS 58
BLAST of MADS-box domain-containing protein vs. UniProt/SwissProt
Match: sp|P38128|SMP1_YEAST (Transcription factor SMP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SMP1 PE=1 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 2.275e-9 Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVNK-DLVYKFS 277 MGR+KI + I+DDR R TF KR+ GLFKKA EL+ LC V I+VII+ + Y++S Sbjct: 1 MGRRKIEIEPIKDDRNRTVTFIKRKAGLFKKAHELSVLCQVDIAVIILGSNNTFYEYS 58
BLAST of MADS-box domain-containing protein vs. UniProt/SwissProt
Match: sp|Q4PSU4|AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=1 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 2.198e-8 Identity = 30/64 (46.88%), Postives = 38/64 (59.38%), Query Frame = 2 Query: 104 AMGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVNKDLVYKFSDPPHSF 295 ++GR+KI M I+ + R TF KRR GLFKKASEL LCG I +I V+ + P SF Sbjct: 61 SIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGII------VFSPAKKPFSF 118
BLAST of MADS-box domain-containing protein vs. UniProt/SwissProt
Match: sp|O64703|AGL29_ARATH (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=2 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 2.431e-8 Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVII 247 MGR+KI M ++D R TF KRR GLFKKASEL LC + +++ Sbjct: 1 MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVV 47
BLAST of MADS-box domain-containing protein vs. UniProt/SwissProt
Match: sp|Q54QY7|SRFD_DICDI (Serum factor response D OS=Dictyostelium discoideum OX=44689 GN=srfD PE=3 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 2.614e-8 Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF+KR+ GL KKA EL LC ++S++IVN Sbjct: 1 MGRKKIKIQRIPDERNRQVTFNKRKNGLIKKAMELALLCDSTVSLVIVN 49
BLAST of MADS-box domain-containing protein vs. TrEMBL
Match: S8DI54 (MADS-box domain-containing protein (Fragment) OS=Genlisea aurea OX=192259 GN=M569_15720 PE=4 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.597e-10 Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 2 Query: 104 AMGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVNKDLVYKFSDPPHSF 295 ++GR+KI M IEDD R TF KRR+G+FKKA+EL+ LCGV I+VII + F+ +SF Sbjct: 8 SLGRRKIEMKLIEDDNARTVTFSKRRVGVFKKATELSILCGVQIAVII------FSFAGRAYSF 65
BLAST of MADS-box domain-containing protein vs. TrEMBL
Match: A0A0G4IL56 (MADS-box domain-containing protein OS=Plasmodiophora brassicae OX=37360 GN=PBRA_004543 PE=4 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.291e-10 Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVNKDLVYKFS 277 MGR+KI + I D + R TF+KR++GL KKA EL+ LCGV +++++ KD +YKFS Sbjct: 1 MGRRKIKIEMIPDAKNRTVTFNKRKVGLLKKAIELSVLCGVDVALVVFGKDTIYKFS 57
BLAST of MADS-box domain-containing protein vs. TrEMBL
Match: A0A0H5RAW9 (MADS-box domain-containing protein OS=Spongospora subterranea OX=70186 PE=4 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.078e-9 Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVNKDLVYKFS 277 MGR+KI + I D R R TF+KR++GL KKA EL+ LCG I+++I ++ VYKFS Sbjct: 1 MGRRKIKIEMIADKRNRTVTFNKRKLGLMKKAIELSVLCGTDIALVIFGQESVYKFS 57
BLAST of MADS-box domain-containing protein vs. TrEMBL
Match: A0A016U7J8 (MADS-box domain-containing protein OS=Ancylostoma ceylanicum OX=53326 GN=Acey_s0053.g2316 PE=4 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 3.723e-9 Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 2 Query: 83 ILHKIIFAMGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 +L ++ F+MGRKKI + I+D+R R TF KR+ GL KKA EL+ LC I++I+ N Sbjct: 18 LLRRVTFSMGRKKIQITRIQDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIVFN 74
BLAST of MADS-box domain-containing protein vs. TrEMBL
Match: A0A4P9ZI70 (SRF-TF-domain-containing protein (Fragment) OS=Metschnikowia bicuspidata OX=27322 GN=METBISCDRAFT_11366 PE=4 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 4.676e-9 Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVNK-DLVYKFS 277 MGR+KI + +EDDR R+ TF KR+ GLFKKA EL+ LC V ++VIIV + VY+FS Sbjct: 1 MGRRKIEIEPLEDDRNRSVTFVKRKAGLFKKAYELSVLCEVDLAVIIVGSNNKVYEFS 58
BLAST of MADS-box domain-containing protein vs. Ensembl Cavefish
Match: mef2d (myocyte enhancer factor 2D [Source:NCBI gene;Acc:103037494]) HSP 1 Score: 57.7658 bits (138), Expect = 1.291e-8 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Cavefish
Match: mef2d (myocyte enhancer factor 2D [Source:NCBI gene;Acc:103037494]) HSP 1 Score: 57.7658 bits (138), Expect = 1.299e-8 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Cavefish
Match: mef2d (myocyte enhancer factor 2D [Source:NCBI gene;Acc:103037494]) HSP 1 Score: 57.7658 bits (138), Expect = 1.332e-8 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Cavefish
Match: mef2d (myocyte enhancer factor 2D [Source:NCBI gene;Acc:103037494]) HSP 1 Score: 57.7658 bits (138), Expect = 1.366e-8 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Cavefish
Match: mef2d (myocyte enhancer factor 2D [Source:NCBI gene;Acc:103037494]) HSP 1 Score: 57.7658 bits (138), Expect = 1.416e-8 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Yeast
Match: RLM1 (MADS-box transcription factor; component of the protein kinase C-mediated MAP kinase pathway involved in the maintenance of cell integrity; phosphorylated and activated by the MAP-kinase Slt2p; RLM1 has a paralog, SMP1, that arose from the whole genome duplication [Source:SGD;Acc:S000006010]) HSP 1 Score: 66.6254 bits (161), Expect = 2.492e-12 Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVNK-DLVYKFS 277 MGR+KI + I DDR RA TF KR+ GLFKKA EL+ LC V I+VII+ + Y+FS Sbjct: 1 MGRRKIEIQRISDDRNRAVTFIKRKAGLFKKAHELSVLCQVDIAVIILGSNNTFYEFS 58
BLAST of MADS-box domain-containing protein vs. Ensembl Yeast
Match: SMP1 (MADS-box transcription factor involved in osmotic stress response; SMP1 has a paralog, RLM1, that arose from the whole genome duplication [Source:SGD;Acc:S000000386]) HSP 1 Score: 62.7734 bits (151), Expect = 3.277e-11 Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVNK-DLVYKFS 277 MGR+KI + I+DDR R TF KR+ GLFKKA EL+ LC V I+VII+ + Y++S Sbjct: 1 MGRRKIEIEPIKDDRNRTVTFIKRKAGLFKKAHELSVLCQVDIAVIILGSNNTFYEYS 58
BLAST of MADS-box domain-containing protein vs. Ensembl Yeast
Match: MCM1 (Transcription factor; involved in cell-type-specific transcription and pheromone response; plays a central role in the formation of both repressor and activator complexes; relocalizes to the cytosol in response to hypoxia [Source:SGD;Acc:S000004646]) HSP 1 Score: 56.225 bits (134), Expect = 2.592e-9 Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 2 Query: 113 RKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVNK-DLVYKFSDP 283 R+KI + FIE+ +R TF KR+ G+ KKA EL+ L G + +++V++ LVY FS P Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75
BLAST of MADS-box domain-containing protein vs. Ensembl Yeast
Match: ARG80 (Transcription factor involved in regulating arginine-responsive genes; acts with Arg81p and Arg82p [Source:SGD;Acc:S000004645]) HSP 1 Score: 51.2174 bits (121), Expect = 3.763e-8 Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 2 Query: 113 RKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIV-NKDLVYKFSDP 283 R+K + +IE+ +R TF KRR G+ KKA EL+ L G +I ++I+ N LVY F+ P Sbjct: 80 RRKQPIRYIENKTRRHVTFSKRRHGIMKKAYELSVLTGANILLLILANSGLVYTFTTP 137
BLAST of MADS-box domain-containing protein vs. Ensembl Nematostella
Match: MEF2 (MADS-box transcription factor; Myocyte enhancer factor 2 splice variant IV; Predicted protein [Source:UniProtKB/TrEMBL;Acc:Q6S5H1]) HSP 1 Score: 57.3806 bits (137), Expect = 1.332e-9 Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI ++ I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQISRIGDERNRQVTFTKRKFGLMKKAYELSILCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Nematostella
Match: EDO43028 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RZP6]) HSP 1 Score: 48.9062 bits (115), Expect = 3.162e-7 Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 2 Query: 110 GRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVNKDL-VYKFS 277 GR KI M FI + +R +TF KR+ G+ KKA EL+ L G + +++ ++ VY F+ Sbjct: 34 GRVKIEMKFISNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFA 90
BLAST of MADS-box domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000029602.1 (pep primary_assembly:ASM223467v1:4:2313004:2320793:-1 gene:ENSORLG00000029337.1 transcript:ENSORLT00000029602.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 55.8398 bits (133), Expect = 9.561e-10 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI ++ I D R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Medaka
Match: mef2d (myocyte-specific enhancer factor 2D homolog [Source:NCBI gene;Acc:101174373]) HSP 1 Score: 57.7658 bits (138), Expect = 1.083e-8 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Medaka
Match: mef2d (myocyte-specific enhancer factor 2D homolog [Source:NCBI gene;Acc:101174373]) HSP 1 Score: 57.7658 bits (138), Expect = 1.256e-8 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Medaka
Match: mef2d (myocyte-specific enhancer factor 2D homolog [Source:NCBI gene;Acc:101174373]) HSP 1 Score: 57.7658 bits (138), Expect = 1.275e-8 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Ensembl Medaka
Match: mef2d (myocyte-specific enhancer factor 2D homolog [Source:NCBI gene;Acc:101174373]) HSP 1 Score: 57.7658 bits (138), Expect = 1.306e-8 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Planmine SMEST
Match: SMESG000011575.1 (SMESG000011575.1) HSP 1 Score: 517.309 bits (1331), Expect = 0.000e+0 Identity = 312/314 (99.36%), Postives = 312/314 (99.36%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVNKDLVYKFSDPPHSFYXXXXXXXXXXXXDFNNDTLLDFINKKAQKNAYINDSNSIEHHSLEEEQNGTLTDDEEDQRFLDVLDEHHLRDVYNNIDPDISPIKENVDILQIKNLNESDQMNAPGGLMAYXXXXXXXXXXXXXXXXXXXXEMPMEFPSKGHEEMITSTKMENVYSELVTVSTTDTSYLYDNTSYSLSNSNWQTYKSHXXXXXXXXXXXXXXXXXXXXXETPTFETCSNGIILHLPNILHEEDDRPNLKRIKRFNDSIDT 1048 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVNKDLVYKFSDPPHSFYKKINNKPEKIEEDFNNDTLLDFINKKAQKNAYINDSNSIEHHSLEEEQNGTLTDDEEDQRFLDVLDEHHLRDVYNNIDPDISPIKENVDILQIKNLNESDQMNAPGGLMAYNFASNNQNIAQI APNNSINEMPMEFPSKGHEE ITSTKMENVYSELVTVSTTDTSYLYDNTSYSLSNSNWQTYKSHNYSNTNLNFNNANYQNATNYLETPTFETCSNGIILHLPNILHEEDDRPNLKRIKRFNDSIDT Sbjct: 1 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVNKDLVYKFSDPPHSFYKKINNKPEKIEEDFNNDTLLDFINKKAQKNAYINDSNSIEHHSLEEEQNGTLTDDEEDQRFLDVLDEHHLRDVYNNIDPDISPIKENVDILQIKNLNESDQMNAPGGLMAYNFASNNQNIAQINAPNNSINEMPMEFPSKGHEERITSTKMENVYSELVTVSTTDTSYLYDNTSYSLSNSNWQTYKSHNYSNTNLNFNNANYQNATNYLETPTFETCSNGIILHLPNILHEEDDRPNLKRIKRFNDSIDT 314
BLAST of MADS-box domain-containing protein vs. Planmine SMEST
Match: SMESG000011575.1 (SMESG000011575.1) HSP 1 Score: 501.901 bits (1291), Expect = 4.875e-179 Identity = 305/307 (99.35%), Postives = 305/307 (99.35%), Query Frame = 2 Query: 128 MNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVNKDLVYKFSDPPHSFYXXXXXXXXXXXXDFNNDTLLDFINKKAQKNAYINDSNSIEHHSLEEEQNGTLTDDEEDQRFLDVLDEHHLRDVYNNIDPDISPIKENVDILQIKNLNESDQMNAPGGLMAYXXXXXXXXXXXXXXXXXXXXEMPMEFPSKGHEEMITSTKMENVYSELVTVSTTDTSYLYDNTSYSLSNSNWQTYKSHXXXXXXXXXXXXXXXXXXXXXETPTFETCSNGIILHLPNILHEEDDRPNLKRIKRFNDSIDT 1048 MNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVNKDLVYKFSDPPHSFYKKINNKPEKIEEDFNNDTLLDFINKKAQKNAYINDSNSIEHHSLEEEQNGTLTDDEEDQRFLDVLDEHHLRDVYNNIDPDISPIKENVDILQIKNLNESDQMNAPGGLMAYNFASNNQNIAQI APNNSINEMPMEFPSKGHEE ITSTKMENVYSELVTVSTTDTSYLYDNTSYSLSNSNWQTYKSHNYSNTNLNFNNANYQNATNYLETPTFETCSNGIILHLPNILHEEDDRPNLKRIKRFNDSIDT Sbjct: 1 MNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVNKDLVYKFSDPPHSFYKKINNKPEKIEEDFNNDTLLDFINKKAQKNAYINDSNSIEHHSLEEEQNGTLTDDEEDQRFLDVLDEHHLRDVYNNIDPDISPIKENVDILQIKNLNESDQMNAPGGLMAYNFASNNQNIAQINAPNNSINEMPMEFPSKGHEERITSTKMENVYSELVTVSTTDTSYLYDNTSYSLSNSNWQTYKSHNYSNTNLNFNNANYQNATNYLETPTFETCSNGIILHLPNILHEEDDRPNLKRIKRFNDSIDT 307
BLAST of MADS-box domain-containing protein vs. Planmine SMEST
Match: SMESG000006802.1 (SMESG000006802.1) HSP 1 Score: 62.003 bits (149), Expect = 4.592e-10 Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + IED+R R TF+KR++GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIQIKRIEDERNRQVTFNKRKMGLMKKAYELSVLCDCEIALIIFN 49
BLAST of MADS-box domain-containing protein vs. Planmine SMEST
Match: SMESG000040479.1 (SMESG000040479.1) HSP 1 Score: 56.225 bits (134), Expect = 3.142e-9 Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 2 Query: 107 MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVN 253 MGRKKI + I+D+R R TF KR+ GL KKA EL+ LC I++II N Sbjct: 1 MGRKKIEIQKIKDERTRQVTFAKRKSGLMKKAYELSVLCDCEIALIIFN 49 The following BLAST results are available for this feature:
BLAST of MADS-box domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of MADS-box domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 2
BLAST of MADS-box domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of MADS-box domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of MADS-box domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of MADS-box domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of MADS-box domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of MADS-box domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of MADS-box domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of MADS-box domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of MADS-box domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 4
BLAST of MADS-box domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 2
BLAST of MADS-box domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of MADS-box domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 4
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30018122 ID=SMED30018122|Name=MADS-box domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1295bpback to top protein sequence of SMED30018122-orf-1 >SMED30018122-orf-1 ID=SMED30018122-orf-1|Name=SMED30018122-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=315bp MGRKKISMNFIEDDRKRASTFDKRRIGLFKKASELNRLCGVSISVIIVNKback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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