Reactive intermediate imine deaminase A homolog

Overview
NameReactive intermediate imine deaminase A homolog
Smed IDSMED30018096
Length (bp)520
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Reactive intermediate imine deaminase A homolog (SMED30018096) t-SNE clustered cells

Violin plots show distribution of expression levels for Reactive intermediate imine deaminase A homolog (SMED30018096) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Reactive intermediate imine deaminase A homolog (SMED30018096) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Reactive intermediate imine deaminase A homolog (SMED30018096) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30018096

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
gutSMED30018096h1SMcG0017270 dd_Smed_v4_1895_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30018096h1SMcG0017270 dd_Smed_v4_1895_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Human
Match: RIDA (reactive intermediate imine deaminase A homolog [Source:HGNC Symbol;Acc:HGNC:16897])

HSP 1 Score: 176.792 bits (447), Expect = 5.415e-57
Identity = 79/132 (59.85%), Postives = 104/132 (78.79%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNL 433
            MS +IR+VISTAKAP AIGPYSQA+LVD+T+YISGQ+G+DP++ +LV   +  + +QAL NM  +L AA C FTNVVK +VLL+DI DF  +NE+Y  +FK  +PARAAYQVA LP  +++EIEA+A+ G L
Sbjct:    1 MSSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPL 132
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Human
Match: RIDA (reactive intermediate imine deaminase A homolog [Source:HGNC Symbol;Acc:HGNC:16897])

HSP 1 Score: 140.969 bits (354), Expect = 1.055e-42
Identity = 62/111 (55.86%), Postives = 85/111 (76.58%), Query Frame = 2 
Query:  101 SQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNL 433
            SQA+LVD+T+YISGQ+G+DP++ +LV   +  + +QAL NM  +L AA C FTNVVK +VLL+DI DF  +NE+Y  +FK  +PARAAYQVA LP  +++EIEA+A+ G L
Sbjct:   33 SQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPL 143
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Human
Match: RIDA (reactive intermediate imine deaminase A homolog [Source:HGNC Symbol;Acc:HGNC:16897])

HSP 1 Score: 100.138 bits (248), Expect = 4.770e-27
Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 2 
Query:  200 TRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNL 433
            T QAL NM  +L AA C FTNVVK +VLL+DI DF  +NE+Y  +FK  +PARAAYQVA LP  +++EIEA+A+ G L
Sbjct:   45 TLQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPL 122
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Celegans
Match: C23G10.2 (RutC family protein C23G10.2 [Source:UniProtKB/Swiss-Prot;Acc:Q10121])

HSP 1 Score: 149.828 bits (377), Expect = 9.095e-47
Identity = 70/135 (51.85%), Postives = 94/135 (69.63%), Query Frame = 2 
Query:   35 LMSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQD 439
            +  ++ R++IS+A AP AIGPYSQA+    T+Y+SG +GLDP T  L  + +  QT Q+L N+  VL AA   + NVVK +VLL +I DF A+NEVY  +FK PYPARAAYQVA LP    VEIEA+A+ G +++
Sbjct:    1 MAQKVTRQIISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLK-EGVVEQTHQSLKNLGEVLKAAGADYGNVVKTTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEAVAIAGEIEE 134
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Celegans
Match: C23G10.2 (RutC family protein C23G10.2 [Source:UniProtKB/Swiss-Prot;Acc:Q10121])

HSP 1 Score: 149.443 bits (376), Expect = 1.672e-46
Identity = 70/135 (51.85%), Postives = 94/135 (69.63%), Query Frame = 2 
Query:   35 LMSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQD 439
            +  ++ R++IS+A AP AIGPYSQA+    T+Y+SG +GLDP T  L  + +  QT Q+L N+  VL AA   + NVVK +VLL +I DF A+NEVY  +FK PYPARAAYQVA LP    VEIEA+A+ G +++
Sbjct:    8 MAQKVTRQIISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLK-EGVVEQTHQSLKNLGEVLKAAGADYGNVVKTTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEAVAIAGEIEE 141
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Celegans
Match: C23G10.2 (RutC family protein C23G10.2 [Source:UniProtKB/Swiss-Prot;Acc:Q10121])

HSP 1 Score: 149.443 bits (376), Expect = 3.646e-46
Identity = 70/135 (51.85%), Postives = 94/135 (69.63%), Query Frame = 2 
Query:   35 LMSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQD 439
            +  ++ R++IS+A AP AIGPYSQA+    T+Y+SG +GLDP T  L  + +  QT Q+L N+  VL AA   + NVVK +VLL +I DF A+NEVY  +FK PYPARAAYQVA LP    VEIEA+A+ G +++
Sbjct:   35 MAQKVTRQIISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLK-EGVVEQTHQSLKNLGEVLKAAGADYGNVVKTTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEAVAIAGEIEE 168
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Celegans
Match: C23G10.2 (RutC family protein C23G10.2 [Source:UniProtKB/Swiss-Prot;Acc:Q10121])

HSP 1 Score: 149.443 bits (376), Expect = 3.646e-46
Identity = 70/135 (51.85%), Postives = 94/135 (69.63%), Query Frame = 2 
Query:   35 LMSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQD 439
            +  ++ R++IS+A AP AIGPYSQA+    T+Y+SG +GLDP T  L  + +  QT Q+L N+  VL AA   + NVVK +VLL +I DF A+NEVY  +FK PYPARAAYQVA LP    VEIEA+A+ G +++
Sbjct:   35 MAQKVTRQIISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLK-EGVVEQTHQSLKNLGEVLKAAGADYGNVVKTTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEAVAIAGEIEE 168
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Fly
Match: UK114 (gene:FBgn0086691 transcript:FBtr0332376)

HSP 1 Score: 135.961 bits (341), Expect = 3.551e-41
Identity = 65/133 (48.87%), Postives = 92/133 (69.17%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQ 436
            MS I+RK+ISTA A   + PY+QA++ D+T+Y+SG +GLD  TMKLV      Q ++AL N+E VL AA+     V+K +V L D+ DF A+NEVY   F + +PAR+ +QVA LP+ A VEIE IA+ G+++
Sbjct:    1 MSTIVRKLISTANAAKPVAPYNQAVVADRTVYVSGCLGLDKDTMKLVPGGPTEQAQKALENLEAVLKAADSGVDKVIKNTVFLKDLNDFGAVNEVYKRVFNKDFPARSCFQVAKLPMDALVEIECIALTGSVE 133
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Fly
Match: UK114 (gene:FBgn0086691 transcript:FBtr0080746)

HSP 1 Score: 135.961 bits (341), Expect = 3.551e-41
Identity = 65/133 (48.87%), Postives = 92/133 (69.17%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQ 436
            MS I+RK+ISTA A   + PY+QA++ D+T+Y+SG +GLD  TMKLV      Q ++AL N+E VL AA+     V+K +V L D+ DF A+NEVY   F + +PAR+ +QVA LP+ A VEIE IA+ G+++
Sbjct:    1 MSTIVRKLISTANAAKPVAPYNQAVVADRTVYVSGCLGLDKDTMKLVPGGPTEQAQKALENLEAVLKAADSGVDKVIKNTVFLKDLNDFGAVNEVYKRVFNKDFPARSCFQVAKLPMDALVEIECIALTGSVE 133
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Fly
Match: CG1578 (gene:FBgn0030336 transcript:FBtr0345160)

HSP 1 Score: 46.2098 bits (108), Expect = 5.057e-6
Identity = 21/57 (36.84%), Postives = 33/57 (57.89%), Query Frame = 2 
Query:   77 APSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAAN 247
            AP+ IGPYSQ+  +    YISGQ+ L P +M ++   I+ Q +  L ++  +  A N
Sbjct:  603 APANIGPYSQSTRIGDITYISGQIALVPGSMTIIEGGIRPQCKLTLRHISRIAKAMN 659
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Fly
Match: CG1578 (gene:FBgn0030336 transcript:FBtr0339749)

HSP 1 Score: 46.2098 bits (108), Expect = 5.057e-6
Identity = 21/57 (36.84%), Postives = 33/57 (57.89%), Query Frame = 2 
Query:   77 APSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAAN 247
            AP+ IGPYSQ+  +    YISGQ+ L P +M ++   I+ Q +  L ++  +  A N
Sbjct:  603 APANIGPYSQSTRIGDITYISGQIALVPGSMTIIEGGIRPQCKLTLRHISRIAKAMN 659
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Fly
Match: CG1578 (gene:FBgn0030336 transcript:FBtr0073607)

HSP 1 Score: 46.2098 bits (108), Expect = 5.057e-6
Identity = 21/57 (36.84%), Postives = 33/57 (57.89%), Query Frame = 2 
Query:   77 APSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAAN 247
            AP+ IGPYSQ+  +    YISGQ+ L P +M ++   I+ Q +  L ++  +  A N
Sbjct:  603 APANIGPYSQSTRIGDITYISGQIALVPGSMTIIEGGIRPQCKLTLRHISRIAKAMN 659
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Zebrafish
Match: rida (reactive intermediate imine deaminase A homolog [Source:ZFIN;Acc:ZDB-GENE-040718-315])

HSP 1 Score: 163.31 bits (412), Expect = 7.252e-52
Identity = 76/134 (56.72%), Postives = 102/134 (76.12%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQD 439
            MS IIRK+I TA AP+AIGPYSQA+LVD+T+YISGQ+G+DP + +L    +Q+QT+QAL N+  +L AA C + NVVK +VL++DI +F  +N+VY  FFK  +PARAAYQV  LP    VEIEA+AV+G + +
Sbjct:    1 MSAIIRKIIHTAAAPAAIGPYSQAVLVDRTMYISGQLGMDPASGQLAAG-VQAQTKQALINIGEILKAAGCGYENVVKATVLMTDINEFNTVNDVYKQFFKSNFPARAAYQVVALPRGGLVEIEAVAVLGPITE 133
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Zebrafish
Match: rida (reactive intermediate imine deaminase A homolog [Source:ZFIN;Acc:ZDB-GENE-040718-315])

HSP 1 Score: 163.31 bits (412), Expect = 7.252e-52
Identity = 76/134 (56.72%), Postives = 102/134 (76.12%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQD 439
            MS IIRK+I TA AP+AIGPYSQA+LVD+T+YISGQ+G+DP + +L    +Q+QT+QAL N+  +L AA C + NVVK +VL++DI +F  +N+VY  FFK  +PARAAYQV  LP    VEIEA+AV+G + +
Sbjct:    1 MSAIIRKIIHTAAAPAAIGPYSQAVLVDRTMYISGQLGMDPASGQLAAG-VQAQTKQALINIGEILKAAGCGYENVVKATVLMTDINEFNTVNDVYKQFFKSNFPARAAYQVVALPRGGLVEIEAVAVLGPITE 133
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Zebrafish
Match: rida (reactive intermediate imine deaminase A homolog [Source:ZFIN;Acc:ZDB-GENE-040718-315])

HSP 1 Score: 136.732 bits (343), Expect = 1.714e-41
Identity = 65/130 (50.00%), Postives = 93/130 (71.54%), Query Frame = 2 
Query:   50 IRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQD 439
            ++K+I     P + G YSQA+LVD+T+YISGQ+G+DP + +L    +Q+QT+QAL N+  +L AA C + NVVK +VL++DI +F  +N+VY  FFK  +PARAAYQV  LP    VEIEA+AV+G + +
Sbjct:    4 VKKIIHAPNTPIS-GIYSQAVLVDRTMYISGQLGMDPASGQLAAG-VQAQTKQALINIGEILKAAGCGYENVVKATVLMTDINEFNTVNDVYKQFFKSNFPARAAYQVVALPRGGLVEIEAVAVLGPITE 131
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Zebrafish
Match: rida (reactive intermediate imine deaminase A homolog [Source:ZFIN;Acc:ZDB-GENE-040718-315])

HSP 1 Score: 136.732 bits (343), Expect = 1.714e-41
Identity = 65/130 (50.00%), Postives = 93/130 (71.54%), Query Frame = 2 
Query:   50 IRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQD 439
            ++K+I     P + G YSQA+LVD+T+YISGQ+G+DP + +L    +Q+QT+QAL N+  +L AA C + NVVK +VL++DI +F  +N+VY  FFK  +PARAAYQV  LP    VEIEA+AV+G + +
Sbjct:    4 VKKIIHAPNTPIS-GIYSQAVLVDRTMYISGQLGMDPASGQLAAG-VQAQTKQALINIGEILKAAGCGYENVVKATVLMTDINEFNTVNDVYKQFFKSNFPARAAYQVVALPRGGLVEIEAVAVLGPITE 131
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Zebrafish
Match: rida (reactive intermediate imine deaminase A homolog [Source:ZFIN;Acc:ZDB-GENE-040718-315])

HSP 1 Score: 136.732 bits (343), Expect = 1.714e-41
Identity = 65/130 (50.00%), Postives = 93/130 (71.54%), Query Frame = 2 
Query:   50 IRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQD 439
            ++K+I     P + G YSQA+LVD+T+YISGQ+G+DP + +L    +Q+QT+QAL N+  +L AA C + NVVK +VL++DI +F  +N+VY  FFK  +PARAAYQV  LP    VEIEA+AV+G + +
Sbjct:    4 VKKIIHAPNTPIS-GIYSQAVLVDRTMYISGQLGMDPASGQLAAG-VQAQTKQALINIGEILKAAGCGYENVVKATVLMTDINEFNTVNDVYKQFFKSNFPARAAYQVVALPRGGLVEIEAVAVLGPITE 131
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Xenopus
Match: pdlim1 (PDZ and LIM domain 1 [Source:Xenbase;Acc:XB-GENE-1004691])

HSP 1 Score: 173.326 bits (438), Expect = 1.168e-55
Identity = 75/134 (55.97%), Postives = 108/134 (80.60%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQD 439
            M+ ++R++ISTAKAP+AIGPYSQA++VDKT+Y+SGQ+G+DP++ +LV   ++++ +QAL NM  +L AA C ++NVVK +VLL+DI DF  +NEVY  FF+  +PARAAYQVA LP   +VEIEA+AV+G + +
Sbjct:    1 MASVVRRIISTAKAPAAIGPYSQAVVVDKTMYVSGQLGMDPSSGQLVAGGVKNEAKQALVNMGEILKAAGCDYSNVVKTTVLLADIGDFNDVNEVYKQFFRCNFPARAAYQVAALPRGGRVEIEAVAVLGPIME 134
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Xenopus
Match: pdlim1 (PDZ and LIM domain 1 [Source:Xenbase;Acc:XB-GENE-1004691])

HSP 1 Score: 152.525 bits (384), Expect = 1.971e-47
Identity = 69/134 (51.49%), Postives = 100/134 (74.63%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQD 439
            MS  +R+++ T KAP     YSQA++VDKT+Y+SGQ+G+DP++ +LV   ++++ +QAL NM  +L AA C ++NVVK +VLL+DI DF  +NEVY  FF+  +PARAAYQVA LP   +VEIEA+AV+G + +
Sbjct:    1 MSFTLRRIVYTPKAPVRRDVYSQAVVVDKTMYVSGQLGMDPSSGQLVAGGVKNEAKQALVNMGEILKAAGCDYSNVVKTTVLLADIGDFNDVNEVYKQFFRCNFPARAAYQVAALPRGGRVEIEAVAVLGPIME 134
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Xenopus
Match: pdlim1 (PDZ and LIM domain 1 [Source:Xenbase;Acc:XB-GENE-1004691])

HSP 1 Score: 139.813 bits (351), Expect = 1.240e-42
Identity = 61/114 (53.51%), Postives = 89/114 (78.07%), Query Frame = 2 
Query:   98 YSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQD 439
            +SQA++VDKT+Y+SGQ+G+DP++ +LV   ++++ +QAL NM  +L AA C ++NVVK +VLL+DI DF  +NEVY  FF+  +PARAAYQVA LP   +VEIEA+AV+G + +
Sbjct:   12 FSQAVVVDKTMYVSGQLGMDPSSGQLVAGGVKNEAKQALVNMGEILKAAGCDYSNVVKTTVLLADIGDFNDVNEVYKQFFRCNFPARAAYQVAALPRGGRVEIEAVAVLGPIME 125
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Xenopus
Match: DPH6 (diphthamine biosynthesis 6 [Source:NCBI gene;Acc:100497052])

HSP 1 Score: 51.6026 bits (122), Expect = 1.233e-7
Identity = 40/130 (30.77%), Postives = 60/130 (46.15%), Query Frame = 2 
Query:   77 APSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAAN--CTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQ----------VAHLPLSAKVEIEAIAVVGN 430
            AP+ IGPYSQA+ V   L+ +GQ+ L P TM+LV      + + +L ++E VL A N   +  +V+ V   ++        N  Y       + +R A +          V  LP  A VE   IA V +
Sbjct:  440 APANIGPYSQAVQVGPGLFCAGQIALKPCTMQLVSGGATVEAQVSLCHVERVLDAINLGTSLAHVLLVQCYVT--------NRSYIPIALAAWGSRNAQEADIVPLTVVVVPMLPRGASVEWHVIAAVSD 561
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Xenopus
Match: DPH6 (diphthamine biosynthesis 6 [Source:NCBI gene;Acc:100497052])

HSP 1 Score: 51.6026 bits (122), Expect = 1.390e-7
Identity = 40/130 (30.77%), Postives = 60/130 (46.15%), Query Frame = 2 
Query:   77 APSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAAN--CTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQ----------VAHLPLSAKVEIEAIAVVGN 430
            AP+ IGPYSQA+ V   L+ +GQ+ L P TM+LV      + + +L ++E VL A N   +  +V+ V   ++        N  Y       + +R A +          V  LP  A VE   IA V +
Sbjct:  428 APANIGPYSQAVQVGPGLFCAGQIALKPCTMQLVSGGATVEAQVSLCHVERVLDAINLGTSLAHVLLVQCYVT--------NRSYIPIALAAWGSRNAQEADIVPLTVVVVPMLPRGASVEWHVIAAVSD 549
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Mouse
Match: Rida (reactive intermediate imine deaminase A homolog [Source:MGI Symbol;Acc:MGI:1095401])

HSP 1 Score: 169.088 bits (427), Expect = 3.277e-54
Identity = 80/130 (61.54%), Postives = 101/130 (77.69%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVG 427
            MS IIRKVIST KAP+AIGPYSQA+ VD+T+YISGQVGLDP++ +LV   +  + +QAL N+  +L AA C F NVVK +VLL+D+ DF  +NE+Y T+F+   PARAAYQVA LP  ++VEIEAIAV G
Sbjct:    1 MSSIIRKVISTTKAPAAIGPYSQAVQVDRTIYISGQVGLDPSSGQLVPGGVVEEAKQALKNLGEILKAAGCDFNNVVKTTVLLADMNDFGTVNEIYKTYFQGSLPARAAYQVAALPRGSRVEIEAIAVQG 130
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. UniProt/SwissProt
Match: sp|P52758|RIDA_HUMAN (2-iminobutanoate/2-iminopropanoate deaminase OS=Homo sapiens OX=9606 GN=RIDA PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 2.601e-56
Identity = 79/132 (59.85%), Postives = 104/132 (78.79%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNL 433
            MS +IR+VISTAKAP AIGPYSQA+LVD+T+YISGQ+G+DP++ +LV   +  + +QAL NM  +L AA C FTNVVK +VLL+DI DF  +NE+Y  +FK  +PARAAYQVA LP  +++EIEA+A+ G L
Sbjct:    1 MSSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPL 132
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. UniProt/SwissProt
Match: sp|P80601|RIDA_CAPHI (2-iminobutanoate/2-iminopropanoate deaminase OS=Capra hircus OX=9925 GN=RIDA PE=1 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 1.189e-55
Identity = 80/132 (60.61%), Postives = 106/132 (80.30%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNL 433
            MS ++R++ISTAKAP+AIGPYSQA+LVD+T+YISGQ+G+DP + +LV   +  + +QALTN+  +L AA C FTNVVK +VLL+DI DF+A+N+VY  +F+  +PARAAYQVA LP   +VEIEAIAV G L
Sbjct:    1 MSSLVRRIISTAKAPAAIGPYSQAVLVDRTIYISGQLGMDPASGQLVPGGVVEEAKQALTNIGEILKAAGCDFTNVVKATVLLADINDFSAVNDVYKQYFQSSFPARAAYQVAALPKGGRVEIEAIAVQGPL 132
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. UniProt/SwissProt
Match: sp|Q3T114|RIDA_BOVIN (2-iminobutanoate/2-iminopropanoate deaminase OS=Bos taurus OX=9913 GN=RIDA PE=2 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 1.242e-55
Identity = 80/132 (60.61%), Postives = 105/132 (79.55%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNL 433
            MS ++RK+ISTAKAP+AIGPYSQA+LVD+T+YISGQ+G+DP + +LV   +  + +QALTN+  +L AA C FTNVVK +VLL+DI DF+ +N+VY  +F+  +PARAAYQVA LP   +VEIEAIAV G L
Sbjct:    1 MSSLVRKIISTAKAPAAIGPYSQAVLVDRTIYISGQLGMDPASGQLVPGGVAEEAKQALTNIGEILKAAGCDFTNVVKATVLLADINDFSTVNDVYKQYFQSSFPARAAYQVAALPKGGRVEIEAIAVQGPL 132
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. UniProt/SwissProt
Match: sp|P52759|RIDA_RAT (2-iminobutanoate/2-iminopropanoate deaminase OS=Rattus norvegicus OX=10116 GN=Rida PE=1 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 1.187e-53
Identity = 78/130 (60.00%), Postives = 103/130 (79.23%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVG 427
            MS IIRKVIST+KAP+AIG YSQA+LVD+T+Y+SGQ+G+DP++ +LV   +  + +QAL N+  +L AA C FTNVVK +VLL+DI DF  +NE+Y T+F+   PARAAYQVA LP  +++EIEAIAV G
Sbjct:    1 MSSIIRKVISTSKAPAAIGAYSQAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNLGEILKAAGCDFTNVVKTTVLLADINDFGTVNEIYKTYFQGNLPARAAYQVAALPKGSRIEIEAIAVQG 130
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. UniProt/SwissProt
Match: sp|P52760|RIDA_MOUSE (2-iminobutanoate/2-iminopropanoate deaminase OS=Mus musculus OX=10090 GN=Rida PE=1 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 2.292e-53
Identity = 80/130 (61.54%), Postives = 101/130 (77.69%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVG 427
            MS IIRKVIST KAP+AIGPYSQA+ VD+T+YISGQVGLDP++ +LV   +  + +QAL N+  +L AA C F NVVK +VLL+D+ DF  +NE+Y T+F+   PARAAYQVA LP  ++VEIEAIAV G
Sbjct:    1 MSSIIRKVISTTKAPAAIGPYSQAVQVDRTIYISGQVGLDPSSGQLVPGGVVEEAKQALKNLGEILKAAGCDFNNVVKTTVLLADMNDFGTVNEIYKTYFQGSLPARAAYQVAALPRGSRVEIEAIAVQG 130
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. TrEMBL
Match: A0A5F9DJ89 (Uncharacterized protein OS=Oryctolagus cuniculus OX=9986 GN=RIDA PE=4 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.088e-56
Identity = 86/132 (65.15%), Postives = 108/132 (81.82%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNL 433
            MS ++RKVISTAKAP+AIGPYSQA+ VD+T+Y+SGQVGLDP++ KLV   +  +T+QALTNM  +L AA C FTNVVK +VLL+D+ DFT +NE+Y  +FK  +PARAAYQVA LPL ++VEIEAIAV G L
Sbjct:    1 MSSLVRKVISTAKAPAAIGPYSQAVQVDRTVYVSGQVGLDPSSGKLVPGGVVEETKQALTNMGEILKAAGCDFTNVVKTTVLLADMNDFTTVNEIYKQYFKSNFPARAAYQVAALPLGSRVEIEAIAVQGPL 132
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. TrEMBL
Match: I3MHC8 (Uncharacterized protein OS=Ictidomys tridecemlineatus OX=43179 GN=Rida PE=4 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 3.357e-56
Identity = 85/132 (64.39%), Postives = 107/132 (81.06%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNL 433
            MS +IRKVISTAKAP AIGPYSQA+LVDKT+YISGQ+G+DP++ +LV   I ++T+QALTNM  +L AA C FTNVVK +VLL+D+ DF  +NE+Y  +FK  +PARAAYQVA LP  A++EIEA+AV G L
Sbjct:    1 MSSLIRKVISTAKAPGAIGPYSQAVLVDKTVYISGQIGMDPSSGQLVPGGIAAETKQALTNMGEILKAAGCDFTNVVKATVLLADMNDFNTVNEIYKQYFKSNFPARAAYQVAALPKGARIEIEAVAVQGPL 132
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. TrEMBL
Match: G3SPS4 (Reactive intermediate imine deaminase A homolog OS=Loxodonta africana OX=9785 GN=RIDA PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.835e-56
Identity = 85/132 (64.39%), Postives = 109/132 (82.58%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNL 433
            MS +IRKVISTAKAP+AIGPYSQA+L+D+T+YISGQ+G+DP++ +LV   +  +T+QALTN+  VL AA C ++NVVK +VLL+DI DFTA+NE+Y  FFK  +PARAAYQVA LP  ++VEIEAIAV G L
Sbjct:    1 MSSLIRKVISTAKAPAAIGPYSQAVLIDRTVYISGQIGMDPSSGQLVPGGVVGETKQALTNIGEVLKAAGCDYSNVVKTTVLLADINDFTAVNEIYQQFFKSNFPARAAYQVAALPKGSRVEIEAIAVQGPL 132
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. TrEMBL
Match: A0A3P9DIR8 (Reactive intermediate imine deaminase A homolog OS=Maylandia zebra OX=106582 GN=RIDA (1 of many) PE=4 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.831e-55
Identity = 83/134 (61.94%), Postives = 108/134 (80.60%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQD 439
            M+ +IR++ISTAKAP+AIGPYSQA++VD+T+YISGQ+G+DP + +LV   +Q+QTRQAL NM  +L AA C +TNVVK +VLL+D+ DFT++N+VY  FF   +PARAAYQVA LP    VEIEAIAV+G L D
Sbjct:    1 MAALIRRIISTAKAPAAIGPYSQAVVVDRTMYISGQLGMDPASGQLVEGGVQAQTRQALVNMAEILKAAGCGYTNVVKTTVLLADMNDFTSVNDVYKQFFSTNFPARAAYQVAALPRGGLVEIEAIAVLGPLTD 134
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. TrEMBL
Match: A0A3B4F597 (Reactive intermediate imine deaminase A homolog OS=Pundamilia nyererei OX=303518 GN=RIDA (1 of many) PE=4 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.831e-55
Identity = 83/134 (61.94%), Postives = 108/134 (80.60%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQD 439
            M+ +IR++ISTAKAP+AIGPYSQA++VD+T+YISGQ+G+DP + +LV   +Q+QTRQAL NM  +L AA C +TNVVK +VLL+D+ DFT++N+VY  FF   +PARAAYQVA LP    VEIEAIAV+G L D
Sbjct:    1 MAALIRRIISTAKAPAAIGPYSQAVVVDRTMYISGQLGMDPASGQLVEGGVQAQTRQALVNMAEILKAAGCGYTNVVKTTVLLADMNDFTSVNDVYKQFFSTNFPARAAYQVAALPRGGLVEIEAIAVLGPLTD 134
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Cavefish
Match: rida (reactive intermediate imine deaminase A homolog [Source:NCBI gene;Acc:103026805])

HSP 1 Score: 167.548 bits (423), Expect = 9.753e-54
Identity = 76/134 (56.72%), Postives = 103/134 (76.87%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQD 439
            MS +IR++I+TA AP+AIGPYSQA++VD+T+YISGQ+G+D  + +LV   +Q+Q +QAL NM  +L AA C + NVVK +VLL+D+ DF  +NEVY  FF + +PARAAYQVA LP    VEIEA+AV+G + D
Sbjct:    1 MSALIRRIINTAAAPAAIGPYSQAVVVDRTMYISGQLGMDTASGQLVAGGVQAQAKQALINMGEILKAAGCGYENVVKTTVLLADMNDFNNVNEVYKQFFSRNFPARAAYQVAALPRGGLVEIEAVAVLGPITD 134
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Cavefish
Match: rida (reactive intermediate imine deaminase A homolog [Source:NCBI gene;Acc:103026805])

HSP 1 Score: 127.102 bits (318), Expect = 4.557e-38
Identity = 63/134 (47.01%), Postives = 86/134 (64.18%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQD 439
            MS +IR++I+TA AP+AIGPYSQA++VD+T+YISGQ+G+D  + +LV   +Q+Q +QAL NM  +L AA C + NV                       F + +PARAAYQVA LP    VEIEA+AV+G + D
Sbjct:    1 MSALIRRIINTAAAPAAIGPYSQAVVVDRTMYISGQLGMDTASGQLVAGGVQAQAKQALINMGEILKAAGCGYENV-----------------------FSRNFPARAAYQVAALPRGGLVEIEAVAVLGPITD 111
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Cavefish
Match: dph6 (diphthamine biosynthesis 6 [Source:NCBI gene;Acc:103047424])

HSP 1 Score: 65.0846 bits (157), Expect = 2.066e-12
Identity = 42/130 (32.31%), Postives = 68/130 (52.31%), Query Frame = 2 
Query:   77 APSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAA--ANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQ-------------VAHLPLSAKVEIEAIAV 421
            AP+ IGPYSQA+ VD+ ++ +GQ+ L P TMKL+     SQ + + +++E VL+A   N T ++V++    +S      +  EV+S+  ++     A +              V  LP  A VE+  IAV
Sbjct:  416 APANIGPYSQAVRVDEAVFCAGQIALVPCTMKLLNRGPASQAQMSYSHVEKVLSAMGQNLTLSHVLQAHCYVSHHSYIPSAKEVWSSKLQEKQGQVACFGAEEIQGTPLVVAVVPSLPRGAAVELHVIAV 545

HSP 2 Score: 45.4394 bits (106), Expect = 9.812e-6
Identity = 21/62 (33.87%), Postives = 34/62 (54.84%), Query Frame = 2 
Query:  185 DIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQ 370
            D++ QT+ ALT ++  L        ++V V + + +++DF  +N VY TFF    PAR   Q
Sbjct:  313 DVRGQTQHALTQLQGELKERGFQLKHIVLVHLYVKNMEDFAEVNSVYCTFFSHNPPARVCVQ 374
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Cavefish
Match: dph6 (diphthamine biosynthesis 6 [Source:NCBI gene;Acc:103047424])

HSP 1 Score: 64.6994 bits (156), Expect = 2.388e-12
Identity = 42/130 (32.31%), Postives = 68/130 (52.31%), Query Frame = 2 
Query:   77 APSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAA--ANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQ-------------VAHLPLSAKVEIEAIAV 421
            AP+ IGPYSQA+ VD+ ++ +GQ+ L P TMKL+     SQ + + +++E VL+A   N T ++V++    +S      +  EV+S+  ++     A +              V  LP  A VE+  IAV
Sbjct:  421 APANIGPYSQAVRVDEAVFCAGQIALVPCTMKLLNRGPASQAQMSYSHVEKVLSAMGQNLTLSHVLQAHCYVSHHSYIPSAKEVWSSKLQEKQGQVACFGAEEIQGTPLVVAVVPSLPRGAAVELHVIAV 550
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Cavefish
Match: dph6 (diphthamine biosynthesis 6 [Source:NCBI gene;Acc:103047424])

HSP 1 Score: 64.6994 bits (156), Expect = 2.542e-12
Identity = 42/130 (32.31%), Postives = 68/130 (52.31%), Query Frame = 2 
Query:   77 APSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAA--ANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQ-------------VAHLPLSAKVEIEAIAV 421
            AP+ IGPYSQA+ VD+ ++ +GQ+ L P TMKL+     SQ + + +++E VL+A   N T ++V++    +S      +  EV+S+  ++     A +              V  LP  A VE+  IAV
Sbjct:  405 APANIGPYSQAVRVDEAVFCAGQIALVPCTMKLLNRGPASQAQMSYSHVEKVLSAMGQNLTLSHVLQAHCYVSHHSYIPSAKEVWSSKLQEKQGQVACFGAEEIQGTPLVVAVVPSLPRGAAVELHVIAV 534
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000356.1 (pep scaffold:Pmarinus_7.0:GL501330:149249:154008:-1 gene:ENSPMAG00000000315.1 transcript:ENSPMAT00000000356.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 131.339 bits (329), Expect = 2.445e-40
Identity = 61/113 (53.98%), Postives = 81/113 (71.68%), Query Frame = 2 
Query:  101 SQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQD 439
            SQA+   +TLY+SGQVGL+P +  LV     +Q RQAL N+  +L  ANC + NVVK +VLL+D+KDF+A+NE Y+ FF   +PARAAYQV  LP  A VEIEA+AV+G + +
Sbjct:    1 SQAVQAGRTLYVSGQVGLEPGSGLLVHGGTGAQARQALKNIGMILKGANCDYKNVVKTTVLLADMKDFSAVNEAYAEFFSSRFPARAAYQVMALPRGASVEIEAVAVLGPISE 113
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Yeast
Match: MMF1 (Mitochondrial protein required for transamination of isoleucine; but not of valine or leucine; may regulate specificity of branched-chain transaminases Bat1p and Bat2p; induction of expression in response to stress is mediated by a Hog1p-regulated antisense RNA and gene looping; interacts genetically with mitochondrial ribosomal protein genes; MMF1 has a paralog, HMF1, that arose from the whole genome duplication [Source:SGD;Acc:S000001313])

HSP 1 Score: 93.5893 bits (231), Expect = 1.834e-25
Identity = 50/123 (40.65%), Postives = 72/123 (58.54%), Query Frame = 2 
Query:   62 ISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGN 430
            +ST  AP A   YSQA+  +  +Y+SGQ+   P   K V   I  +  Q   N++N+LA +N +  N+VKV+V L+D+K+F   N VY+  F    PAR+   VA LPL+  +E+E IAV  N
Sbjct:   24 VSTKLAPPAAASYSQAMKANNFVYVSGQIPYTPDN-KPVQGSISEKAEQVFQNVKNILAESNSSLDNIVKVNVFLADMKNFAEFNSVYAKHFHTHKPARSCVGVASLPLNVDLEMEVIAVEKN 145
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Yeast
Match: HMF1 (Member of the p14.5 protein family; functionally complements Mmf1p function when targeted to mitochondria; heat shock inducible; high-dosage growth inhibitor; forms a homotrimer in vitro; HMF1 has a paralog, MMF1, that arose from the whole genome duplication [Source:SGD;Acc:S000000859])

HSP 1 Score: 80.4925 bits (197), Expect = 1.667e-20
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 2 
Query:  116 VDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIA 418
            V+  +++SGQ+ + P   KLV   I  +  Q + N++NVL A+N +   VVKV++ L+DI  F   N VY+ +F    PAR+   VA LPL   +E+EAIA
Sbjct:   26 VNNLIFLSGQIPVTPDN-KLVEGSIADKAEQVIQNIKNVLEASNSSLDRVVKVNIFLADINHFAEFNSVYAKYFNTHKPARSCVAVAALPLGVDMEMEAIA 125
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Nematostella
Match: EDO42120 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S2C7])

HSP 1 Score: 172.94 bits (437), Expect = 2.574e-56
Identity = 76/134 (56.72%), Postives = 104/134 (77.61%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQD 439
            M+  +RK++ST K+P AIG YSQA++ DKT+YISGQ+GL+P TM+  G+D+ +Q +QALTNM ++L A    F  VVK +VLL+DI DF A+NEVY ++F +  PARAAYQ A+LP  A+VEIEAIA+VG ++D
Sbjct:    1 MAATVRKIVSTLKSPGAIGAYSQAVITDKTMYISGQIGLNPETMEFAGEDVVTQAKQALTNMGHILEAGGSAFNKVVKATVLLADINDFAAVNEVYKSYFTEKQPARAAYQAANLPKGARVEIEAIAIVGEVKD 134
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Nematostella
Match: EDO49487 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RG88])

HSP 1 Score: 51.2174 bits (121), Expect = 2.846e-8
Identity = 21/55 (38.18%), Postives = 37/55 (67.27%), Query Frame = 2 
Query:   77 APSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAA 241
            AP+ IGPYSQA+     +++SG +GL P +MKLV   + +Q   +L +++ +++A
Sbjct:  100 APANIGPYSQAVKAGALMFVSGNIGLWPASMKLVDGGVSTQAALSLRHVDRIVSA 154
[Close]
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Medaka
Match: rida (2-iminobutanoate/2-iminopropanoate deaminase [Source:NCBI gene;Acc:101155823])

HSP 1 Score: 171.4 bits (433), Expect = 3.652e-55
Identity = 81/135 (60.00%), Postives = 102/135 (75.56%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQDN 442
            MS + RK I T  AP+AIGPYSQ +LVD+T+YISGQ+G+D  T +LV   +Q+Q +QALTNM  +L A  CT+ NVVK +VLL DI DF ++NEVYS+FF   +PARAAYQVA LP  A VEIEA+AV+G L D+
Sbjct:    1 MSALNRKFIYTTSAPAAIGPYSQGVLVDRTMYISGQIGMDVVTGQLVVGGVQAQAKQALTNMGEILKAGGCTYNNVVKTTVLLKDIDDFNSVNEVYSSFFSSNFPARAAYQVAALPRGALVEIEAVAVLGPLSDS 135
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BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Medaka
Match: rida (reactive intermediate imine deaminase A homolog [Source:NCBI gene;Acc:101165253])

HSP 1 Score: 170.629 bits (431), Expect = 5.718e-55
Identity = 78/134 (58.21%), Postives = 105/134 (78.36%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQD 439
            MS +I+K+IST KAP+AIGPYSQA+LVD+T++ISGQ+G+DP T +LV   +Q+QTRQAL N+  +L AA C + NVVK +VLL+++ DFT++N+VY  FF   +PARAAYQVA LP    VEIEA+A +G L +
Sbjct:    1 MSALIKKIISTTKAPAAIGPYSQAVLVDRTMFISGQLGMDPATTQLVEGGVQAQTRQALVNLGEILKAAGCGYENVVKTTVLLANMNDFTSVNDVYKQFFSSNFPARAAYQVAALPKGGLVEIEAVAGLGPLTN 134
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BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Medaka
Match: dph6 (diphthamine biosynthesis 6 [Source:NCBI gene;Acc:105356906])

HSP 1 Score: 58.151 bits (139), Expect = 4.309e-10
Identity = 38/131 (29.01%), Postives = 65/131 (49.62%), Query Frame = 2 
Query:   77 APSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAA--NCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFK--------------QPYPARAAYQVAHLPLSAKVEIEAIAV 421
            AP+ IGPYSQA+ V+K ++ +GQ+ L P T++L+      QT+   ++++ VL A   + T  +V++    ++  +D   +   + + F+              +P P   A  V  LP  A VEI   AV
Sbjct:  431 APANIGPYSQALRVNKEVFCAGQIALVPCTLQLLQGSTHLQTQLVFSHVKKVLEATIHSLTLAHVIQAHCYITRYQDIWLVRNAWKSLFRATEEEKDLLWESDIKPLPLLIAV-VPALPKDAAVEIHVTAV 560
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BLAST of Reactive intermediate imine deaminase A homolog vs. Planmine SMEST
Match: SMESG000036895.1 (SMESG000036895.1)

HSP 1 Score: 276.174 bits (705), Expect = 1.058e-96
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 2 
Query:   38 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQDN 442
            MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQDN
Sbjct:    1 MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDDIQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFFKQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQDN 135
The following BLAST results are available for this feature:
BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3
Match NameE-valueIdentityDescription
RIDA5.415e-5759.85reactive intermediate imine deaminase A homolog [S... [more]
RIDA1.055e-4255.86reactive intermediate imine deaminase A homolog [S... [more]
RIDA4.770e-2758.97reactive intermediate imine deaminase A homolog [S... [more]
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BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 4
Match NameE-valueIdentityDescription
C23G10.29.095e-4751.85RutC family protein C23G10.2 [Source:UniProtKB/Sw... [more]
C23G10.21.672e-4651.85RutC family protein C23G10.2 [Source:UniProtKB/Sw... [more]
C23G10.23.646e-4651.85RutC family protein C23G10.2 [Source:UniProtKB/Sw... [more]
C23G10.23.646e-4651.85RutC family protein C23G10.2 [Source:UniProtKB/Sw... [more]
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BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
UK1143.551e-4148.87gene:FBgn0086691 transcript:FBtr0332376[more]
UK1143.551e-4148.87gene:FBgn0086691 transcript:FBtr0080746[more]
CG15785.057e-636.84gene:FBgn0030336 transcript:FBtr0345160[more]
CG15785.057e-636.84gene:FBgn0030336 transcript:FBtr0339749[more]
CG15785.057e-636.84gene:FBgn0030336 transcript:FBtr0073607[more]
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BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rida7.252e-5256.72reactive intermediate imine deaminase A homolog [S... [more]
rida7.252e-5256.72reactive intermediate imine deaminase A homolog [S... [more]
rida1.714e-4150.00reactive intermediate imine deaminase A homolog [S... [more]
rida1.714e-4150.00reactive intermediate imine deaminase A homolog [S... [more]
rida1.714e-4150.00reactive intermediate imine deaminase A homolog [S... [more]
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BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
pdlim11.168e-5555.97PDZ and LIM domain 1 [Source:Xenbase;Acc:XB-GENE-1... [more]
pdlim11.971e-4751.49PDZ and LIM domain 1 [Source:Xenbase;Acc:XB-GENE-1... [more]
pdlim11.240e-4253.51PDZ and LIM domain 1 [Source:Xenbase;Acc:XB-GENE-1... [more]
DPH61.233e-730.77diphthamine biosynthesis 6 [Source:NCBI gene;Acc:1... [more]
DPH61.390e-730.77diphthamine biosynthesis 6 [Source:NCBI gene;Acc:1... [more]
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BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Rida3.277e-5461.54reactive intermediate imine deaminase A homolog [S... [more]
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BLAST of Reactive intermediate imine deaminase A homolog vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P52758|RIDA_HUMAN2.601e-5659.852-iminobutanoate/2-iminopropanoate deaminase OS=Ho... [more]
sp|P80601|RIDA_CAPHI1.189e-5560.612-iminobutanoate/2-iminopropanoate deaminase OS=Ca... [more]
sp|Q3T114|RIDA_BOVIN1.242e-5560.612-iminobutanoate/2-iminopropanoate deaminase OS=Bo... [more]
sp|P52759|RIDA_RAT1.187e-5360.002-iminobutanoate/2-iminopropanoate deaminase OS=Ra... [more]
sp|P52760|RIDA_MOUSE2.292e-5361.542-iminobutanoate/2-iminopropanoate deaminase OS=Mu... [more]
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BLAST of Reactive intermediate imine deaminase A homolog vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A5F9DJ891.088e-5665.15Uncharacterized protein OS=Oryctolagus cuniculus O... [more]
I3MHC83.357e-5664.39Uncharacterized protein OS=Ictidomys tridecemlinea... [more]
G3SPS46.835e-5664.39Reactive intermediate imine deaminase A homolog OS... [more]
A0A3P9DIR81.831e-5561.94Reactive intermediate imine deaminase A homolog OS... [more]
A0A3B4F5971.831e-5561.94Reactive intermediate imine deaminase A homolog OS... [more]
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BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rida9.753e-5456.72reactive intermediate imine deaminase A homolog [S... [more]
rida4.557e-3847.01reactive intermediate imine deaminase A homolog [S... [more]
dph62.066e-1232.31diphthamine biosynthesis 6 [Source:NCBI gene;Acc:1... [more]
dph62.388e-1232.31diphthamine biosynthesis 6 [Source:NCBI gene;Acc:1... [more]
dph62.542e-1232.31diphthamine biosynthesis 6 [Source:NCBI gene;Acc:1... [more]
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BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSPMAT00000000356.12.445e-4053.98pep scaffold:Pmarinus_7.0:GL501330:149249:154008:-... [more]
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BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2
Match NameE-valueIdentityDescription
MMF11.834e-2540.65Mitochondrial protein required for transamination ... [more]
HMF11.667e-2040.59Member of the p14.5 protein family; functionally c... [more]
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BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO421202.574e-5656.72Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO494872.846e-838.18Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Reactive intermediate imine deaminase A homolog vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3
Match NameE-valueIdentityDescription
rida3.652e-5560.002-iminobutanoate/2-iminopropanoate deaminase [Sour... [more]
rida5.718e-5558.21reactive intermediate imine deaminase A homolog [S... [more]
dph64.309e-1029.01diphthamine biosynthesis 6 [Source:NCBI gene;Acc:1... [more]
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BLAST of Reactive intermediate imine deaminase A homolog vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000036895.11.058e-96100.00SMESG000036895.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30018096 ID=SMED30018096|Name=Reactive intermediate imine deaminase A homolog|organism=Schmidtea mediterranea sexual|type=transcript|length=520bp
ATTAATTAGACTTAACAATTTTAGATTCAACTAATTAATGTCGCAAATTA
TACGAAAAGTTATTAGCACAGCTAAAGCTCCTTCTGCTATTGGTCCATAT
AGTCAAGCAATTTTAGTCGATAAAACTCTATACATTTCTGGTCAAGTTGG
ACTTGATCCAACTACAATGAAATTAGTCGGGGATGATATTCAAAGTCAAA
CTAGACAAGCTTTGACTAATATGGAAAATGTATTAGCAGCTGCCAACTGT
ACTTTTACAAATGTTGTTAAGGTTTCCGTTTTGTTATCAGATATCAAAGA
TTTTACTGCTATGAACGAAGTTTATAGTACTTTTTTCAAACAACCCTATC
CTGCTCGAGCGGCTTATCAAGTGGCGCATCTTCCACTATCTGCTAAAGTC
GAAATTGAAGCTATTGCTGTAGTCGGAAATTTACAAGATAATTAAATGTT
CTAATTAGTTTTAGTTTAAATAATAAAAATACAAATTTGAAGACTTTATT
TTATTTTCGGTATAATCCAG
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protein sequence of SMED30018096-orf-1

>SMED30018096-orf-1 ID=SMED30018096-orf-1|Name=SMED30018096-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=136bp
MSQIIRKVISTAKAPSAIGPYSQAILVDKTLYISGQVGLDPTTMKLVGDD
IQSQTRQALTNMENVLAAANCTFTNVVKVSVLLSDIKDFTAMNEVYSTFF
KQPYPARAAYQVAHLPLSAKVEIEAIAVVGNLQDN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003729mRNA binding
GO:0019239deaminase activity
Vocabulary: cellular component
TermDefinition
GO:0005634nucleus
GO:0005737cytoplasm
Vocabulary: biological process
TermDefinition
GO:0006402mRNA catabolic process
GO:0061157mRNA destabilization
GO:1901565organonitrogen compound catabolic process
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR035959RutC-like_sf
IPR006056RidA
IPR013813Endoribo_LPSP/chorism_mut-like
IPR006175YjgF/YER057c/UK114
IPR019897RidA_CS
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006175YjgF/YER057c/UK114 familyPFAMPF01042Ribonuc_L-PSPcoord: 12..129
e-value: 7.5E-44
score: 148.6
IPR006175YjgF/YER057c/UK114 familyPANTHERPTHR118032-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDAcoord: 5..128
IPR035959RutC-like superfamilyGENE3DG3DSA:3.30.1330.40coord: 1..134
e-value: 1.7E-56
score: 191.7
IPR035959RutC-like superfamilySUPERFAMILYSSF55298YjgF-likecoord: 3..130
IPR006056RidA familyTIGRFAMTIGR00004TIGR00004coord: 7..128
e-value: 2.9E-52
score: 174.1
NoneNo IPR availablePANTHERPTHR11803:SF392-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASEcoord: 5..128
NoneNo IPR availableCDDcd00448YjgF_YER057c_UK114_familycoord: 21..127
e-value: 4.31713E-44
score: 138.075
IPR019897RidA, conserved sitePROSITEPS01094UPF0076coord: 105..123