SMED30018063
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30018063 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 11
Homology
BLAST of SMED30018063 vs. Ensembl Human
Match: TRAF2 (TNF receptor associated factor 2 [Source:HGNC Symbol;Acc:HGNC:12032]) HSP 1 Score: 84.7297 bits (208), Expect = 4.278e-17 Identity = 37/81 (45.68%), Postives = 54/81 (66.67%), Query Frame = -3 Query: 84 YTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILI 326 + WKI +A K + A +I I S FYT GY+M LR+Y NGDG G+G +LS++F++ +G D L WPFN+KVT+++ Sbjct: 354 FIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLML 434
BLAST of SMED30018063 vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]) HSP 1 Score: 84.7297 bits (208), Expect = 4.453e-17 Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WKI + + + A K + + S FYT GY+M RVY NGDG+GKG +LS++F++ RG YD L WPF +KVT+++ G + DP S Sbjct: 337 WKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNS 435
BLAST of SMED30018063 vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]) HSP 1 Score: 84.7297 bits (208), Expect = 5.238e-17 Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WKI + + + A K + + S FYT GY+M RVY NGDG+GKG +LS++F++ RG YD L WPF +KVT+++ G + DP S Sbjct: 420 WKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNS 518
BLAST of SMED30018063 vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]) HSP 1 Score: 84.7297 bits (208), Expect = 5.238e-17 Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WKI + + + A K + + S FYT GY+M RVY NGDG+GKG +LS++F++ RG YD L WPF +KVT+++ G + DP S Sbjct: 420 WKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNS 518
BLAST of SMED30018063 vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]) HSP 1 Score: 84.3445 bits (207), Expect = 5.966e-17 Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WKI + + + A K + + S FYT GY+M RVY NGDG+GKG +LS++F++ RG YD L WPF +KVT+++ G + DP S Sbjct: 395 WKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNS 493
BLAST of SMED30018063 vs. Ensembl Celegans
Match: trf-1 (TNF Receptor Associated Factor (TRAF) homolog; TRF-1 [Source:UniProtKB/TrEMBL;Acc:G5EG80]) HSP 1 Score: 60.077 bits (144), Expect = 1.351e-9 Identity = 33/101 (32.67%), Postives = 52/101 (51.49%), Query Frame = -3 Query: 21 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTI-LIAKPGKWEERHSEKLGVDPKSM 320 WKI ++ A+ I S F + GY+M GDG GK +S+Y LL +G +D LEWPF+R + I L+ + + E+R + +DP+ + Sbjct: 267 WKIDKLQQRTNEAKSGADTTIFSVPFMSHRFGYKMMACACLFGDGSSAGKSISLYVLLLKGEFDPTLEWPFHRAIKISLLDQNPRPEDRVNITYVIDPRKL 367
BLAST of SMED30018063 vs. Ensembl Celegans
Match: trf-2 (TNF Receptor Associated Factor (TRAF) homolog [Source:UniProtKB/TrEMBL;Acc:Q9N586]) HSP 1 Score: 52.7582 bits (125), Expect = 2.133e-7 Identity = 29/77 (37.66%), Postives = 39/77 (50.65%), Query Frame = -3 Query: 63 VKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWE 293 VK+ + + I S FY+ GY+M P GDG+ +Y SV+ L +G +D LEWPF VT I K E Sbjct: 172 VKATKNKSHRSIYSQPFYSHGYGYKMMAVAAPYGDGLAFREYFSVFVCLMKGEWDDILEWPFRCDVTFSILSDDKKE 248
BLAST of SMED30018063 vs. Ensembl Fly
Match: Traf4 (gene:FBgn0026319 transcript:FBtr0077429) HSP 1 Score: 63.1586 bits (152), Expect = 2.184e-10 Identity = 28/83 (33.73%), Postives = 48/83 (57.83%), Query Frame = -3 Query: 72 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPG 320 WKI W+ K+ A + + + S FYT GY+++ ++ NG+G G+ ++SVY + G YD L+WPF+ +T + + G Sbjct: 335 WKITDWSAKMAEARGKDGLELVSPPFYTSQYGYKLQASMFLNGNGPGENTHVSVYIKVLPGEYDALLKWPFSHSITFTLFEQG 417
BLAST of SMED30018063 vs. Ensembl Fly
Match: Traf4 (gene:FBgn0026319 transcript:FBtr0334401) HSP 1 Score: 62.7734 bits (151), Expect = 2.205e-10 Identity = 28/83 (33.73%), Postives = 48/83 (57.83%), Query Frame = -3 Query: 72 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPG 320 WKI W+ K+ A + + + S FYT GY+++ ++ NG+G G+ ++SVY + G YD L+WPF+ +T + + G Sbjct: 326 WKITDWSAKMAEARGKDGLELVSPPFYTSQYGYKLQASMFLNGNGPGENTHVSVYIKVLPGEYDALLKWPFSHSITFTLFEQG 408
BLAST of SMED30018063 vs. Ensembl Zebrafish
Match: traf3 (TNF receptor-associated factor 3 [Source:ZFIN;Acc:ZDB-GENE-040801-257]) HSP 1 Score: 87.0409 bits (214), Expect = 6.175e-18 Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WKI + + + A K + + S FYT GY+M RVY NGDG+GKG +LS++F++ RG YD L+WPF +KVT+++ G + + DP S Sbjct: 425 WKIRDYKRRKQEAVVSKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVVMRGEYDALLQWPFKQKVTLMLMDQGPARKHLGDAFKPDPSS 523
BLAST of SMED30018063 vs. Ensembl Zebrafish
Match: BX901915.1 (pep chromosome:GRCz11:CHR_ALT_CTG5_1_18:28764891:28768979:-1 gene:ENSDARG00000109857.1 transcript:ENSDART00000191629.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX901915.1) HSP 1 Score: 83.1889 bits (204), Expect = 1.406e-17 Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = -3 Query: 63 YTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWE 326 + WKI +++K + A + + S FYT GY+M LR+Y NGDG G+G +LS++F++ RG D L+WPFN+KVT+++ E Sbjct: 128 FVWKISDFSKKRQDAVAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMRGHSDALLKWPFNQKVTLMLLDQNNRE 215
BLAST of SMED30018063 vs. Ensembl Zebrafish
Match: AL844899.1 (pep chromosome:GRCz11:CHR_ALT_CTG5_2_4:28756846:28760787:-1 gene:ENSDARG00000111038.1 transcript:ENSDART00000183806.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AL844899.1) HSP 1 Score: 83.1889 bits (204), Expect = 1.406e-17 Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = -3 Query: 63 YTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWE 326 + WKI +++K + A + + S FYT GY+M LR+Y NGDG G+G +LS++F++ RG D L+WPFN+KVT+++ E Sbjct: 128 FVWKISDFSKKRQDAVAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMRGHSDALLKWPFNQKVTLMLLDQNNRE 215
BLAST of SMED30018063 vs. Ensembl Zebrafish
Match: traf2a (Tnf receptor-associated factor 2a [Source:ZFIN;Acc:ZDB-GENE-071120-2]) HSP 1 Score: 83.1889 bits (204), Expect = 9.843e-17 Identity = 35/81 (43.21%), Postives = 55/81 (67.90%), Query Frame = -3 Query: 84 YTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILI 326 + WKI +++K + A + + S FYT GY+M LR+Y NGDG G+G +LS++F++ RG D L+WPFN+KVT+++ Sbjct: 428 FVWKISDFSKKRQDAVAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMRGHSDALLKWPFNQKVTLML 508
BLAST of SMED30018063 vs. Ensembl Zebrafish
Match: unm_sa808 (un-named sa808 [Source:ZFIN;Acc:ZDB-GENE-120727-21]) HSP 1 Score: 80.8777 bits (198), Expect = 1.224e-16 Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = -3 Query: 63 YTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWE 326 + W+I + +K + A + + S FYT GY+M LR+Y NGDG G+G +LS++F++ RG D L+WPFN+KVT+++ E Sbjct: 134 FIWRISDFTKKRQDAIAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMRGMSDALLKWPFNQKVTLMLLDQSNRE 221
BLAST of SMED30018063 vs. Ensembl Xenopus
Match: slc12a1 (solute carrier family 12 member 1 [Source:Xenbase;Acc:XB-GENE-479925]) HSP 1 Score: 85.5001 bits (210), Expect = 2.249e-17 Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WKI + K + A E + + I S FYT GYR+ R Y NGDG GKG +LS+YF++ +G +D L WPF +KVT+++ + ++ DP S Sbjct: 387 WKITDYERKKREAMEGRAVSIFSQHFYTSWCGYRLCARAYLNGDGSGKGSFLSLYFVVMKGEFDSILLWPFKQKVTLMLLDQSGKKNHITDVFRADPNS 485
BLAST of SMED30018063 vs. Ensembl Xenopus
Match: slc12a1 (solute carrier family 12 member 1 [Source:Xenbase;Acc:XB-GENE-479925]) HSP 1 Score: 85.1149 bits (209), Expect = 2.590e-17 Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WKI + K + A E + + I S FYT GYR+ R Y NGDG GKG +LS+YF++ +G +D L WPF +KVT+++ + ++ DP S Sbjct: 337 WKITDYERKKREAMEGRAVSIFSQHFYTSWCGYRLCARAYLNGDGSGKGSFLSLYFVVMKGEFDSILLWPFKQKVTLMLLDQSGKKNHITDVFRADPNS 435
BLAST of SMED30018063 vs. Ensembl Xenopus
Match: slc12a1 (solute carrier family 12 member 1 [Source:Xenbase;Acc:XB-GENE-479925]) HSP 1 Score: 85.5001 bits (210), Expect = 2.825e-17 Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WKI + K + A E + + I S FYT GYR+ R Y NGDG GKG +LS+YF++ +G +D L WPF +KVT+++ + ++ DP S Sbjct: 388 WKITDYERKKREAMEGRAVSIFSQHFYTSWCGYRLCARAYLNGDGSGKGSFLSLYFVVMKGEFDSILLWPFKQKVTLMLLDQSGKKNHITDVFRADPNS 486
BLAST of SMED30018063 vs. Ensembl Xenopus
Match: ssh2 (slingshot protein phosphatase 2 [Source:Xenbase;Acc:XB-GENE-993093]) HSP 1 Score: 82.8037 bits (203), Expect = 1.759e-16 Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WKI + + + A K + + S FYT GY+M RVY NGDG+GKG +LS++F++ RG YD L WPF +KV++++ G + DP S Sbjct: 413 WKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVSLMLMDQGPSRRHLGDAFKPDPNS 511
BLAST of SMED30018063 vs. Ensembl Xenopus
Match: ssh2 (slingshot protein phosphatase 2 [Source:Xenbase;Acc:XB-GENE-993093]) HSP 1 Score: 82.8037 bits (203), Expect = 1.798e-16 Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WKI + + + A K + + S FYT GY+M RVY NGDG+GKG +LS++F++ RG YD L WPF +KV++++ G + DP S Sbjct: 388 WKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVSLMLMDQGPSRRHLGDAFKPDPNS 486
BLAST of SMED30018063 vs. Ensembl Mouse
Match: Traf5 (TNF receptor-associated factor 5 [Source:MGI Symbol;Acc:MGI:107548]) HSP 1 Score: 84.3445 bits (207), Expect = 4.646e-18 Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WK+ + K + A E + + S FYT GYR+ R Y NGDG GKG +LS+YF++ RG +D L+WPF ++VT+++ + E DP S Sbjct: 100 WKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNS 198
BLAST of SMED30018063 vs. Ensembl Mouse
Match: Traf5 (TNF receptor-associated factor 5 [Source:MGI Symbol;Acc:MGI:107548]) HSP 1 Score: 84.3445 bits (207), Expect = 4.646e-18 Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WK+ + K + A E + + S FYT GYR+ R Y NGDG GKG +LS+YF++ RG +D L+WPF ++VT+++ + E DP S Sbjct: 100 WKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNS 198
BLAST of SMED30018063 vs. Ensembl Mouse
Match: Traf5 (TNF receptor-associated factor 5 [Source:MGI Symbol;Acc:MGI:107548]) HSP 1 Score: 85.1149 bits (209), Expect = 3.072e-17 Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WK+ + K + A E + + S FYT GYR+ R Y NGDG GKG +LS+YF++ RG +D L+WPF ++VT+++ + E DP S Sbjct: 402 WKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNS 500
BLAST of SMED30018063 vs. Ensembl Mouse
Match: Traf5 (TNF receptor-associated factor 5 [Source:MGI Symbol;Acc:MGI:107548]) HSP 1 Score: 85.1149 bits (209), Expect = 3.072e-17 Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WK+ + K + A E + + S FYT GYR+ R Y NGDG GKG +LS+YF++ RG +D L+WPF ++VT+++ + E DP S Sbjct: 402 WKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNS 500
BLAST of SMED30018063 vs. Ensembl Mouse
Match: Traf3 (TNF receptor-associated factor 3 [Source:MGI Symbol;Acc:MGI:108041]) HSP 1 Score: 84.3445 bits (207), Expect = 4.376e-17 Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WKI + + + A K + + S FYT GY+M RVY NGDG+GKG +LS++F++ RG YD L WPF +KVT+++ G + DP S Sbjct: 419 WKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNS 517
BLAST of SMED30018063 vs. UniProt/SwissProt
Match: sp|Q12933|TRAF2_HUMAN (TNF receptor-associated factor 2 OS=Homo sapiens OX=9606 GN=TRAF2 PE=1 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 2.055e-16 Identity = 37/81 (45.68%), Postives = 54/81 (66.67%), Query Frame = -3 Query: 84 YTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILI 326 + WKI +A K + A +I I S FYT GY+M LR+Y NGDG G+G +LS++F++ +G D L WPFN+KVT+++ Sbjct: 354 FIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLML 434
BLAST of SMED30018063 vs. UniProt/SwissProt
Match: sp|Q13114|TRAF3_HUMAN (TNF receptor-associated factor 3 OS=Homo sapiens OX=9606 GN=TRAF3 PE=1 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 2.515e-16 Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WKI + + + A K + + S FYT GY+M RVY NGDG+GKG +LS++F++ RG YD L WPF +KVT+++ G + DP S Sbjct: 420 WKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNS 518
BLAST of SMED30018063 vs. UniProt/SwissProt
Match: sp|P70191|TRAF5_MOUSE (TNF receptor-associated factor 5 OS=Mus musculus OX=10090 GN=Traf5 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 2.629e-16 Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WK+ + K + A E + + S FYT GYR+ R Y NGDG GKG +LS+YF++ RG +D L+WPF ++VT+++ + E DP S Sbjct: 408 WKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNS 506
BLAST of SMED30018063 vs. UniProt/SwissProt
Match: sp|Q60803|TRAF3_MOUSE (TNF receptor-associated factor 3 OS=Mus musculus OX=10090 GN=Traf3 PE=1 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 3.061e-16 Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WKI + + + A K + + S FYT GY+M RVY NGDG+GKG +LS++F++ RG YD L WPF +KVT+++ G + DP S Sbjct: 419 WKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNS 517
BLAST of SMED30018063 vs. UniProt/SwissProt
Match: sp|P39429|TRAF2_MOUSE (TNF receptor-associated factor 2 OS=Mus musculus OX=10090 GN=Traf2 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 9.219e-16 Identity = 36/81 (44.44%), Postives = 53/81 (65.43%), Query Frame = -3 Query: 84 YTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILI 326 + WKI + K + A + I S FYT GY+M LRVY NGDG G+G +LS++F++ +G D L+WPFN+KVT+++ Sbjct: 354 FIWKISDFTRKRQEAVAGRTPAIFSPAFYTSRYGYKMCLRVYLNGDGTGRGTHLSLFFVVMKGPNDALLQWPFNQKVTLML 434
BLAST of SMED30018063 vs. TrEMBL
Match: H2YYB2 (MATH domain-containing protein OS=Ciona savignyi OX=51511 PE=4 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.283e-18 Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = -3 Query: 24 TWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 323 TW I + + AE +++ I S FYT GY+M R+YPNGDG+GKG ++S++F++ +G YD L WPF +KVT+++ G S+ DP S Sbjct: 9 TWIIQNYQRHKREAESGRVLSIYSQPFYTSRYGYKMCARIYPNGDGMGKGTHMSLFFVVMKGEYDALLPWPFRQKVTLMLLDQGVDRRHLSDTFRPDPTS 108
BLAST of SMED30018063 vs. TrEMBL
Match: H2YBL7 (MATH domain-containing protein OS=Ciona savignyi OX=51511 PE=4 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.268e-17 Identity = 40/100 (40.00%), Postives = 61/100 (61.00%), Query Frame = -3 Query: 24 TWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 323 TWKI +A + + A +++ + S FYT GY+M RVY NGDG+GKG ++S++F++ +G YD L WPF +KVT+++ G S+ DP S Sbjct: 9 TWKIPDFARRKREAVSGRVLSLYSQPFYTSRYGYKMCARVYLNGDGMGKGTHMSLFFVVMKGEYDALLPWPFRQKVTLMLLDQGMDRRHLSDTFKPDPTS 108
BLAST of SMED30018063 vs. TrEMBL
Match: D5JG60 (TNF receptor-associated factor-2-like protein B OS=Dugesia japonica OX=6161 GN=TRAF-2B PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 5.019e-17 Identity = 45/101 (44.55%), Postives = 60/101 (59.41%), Query Frame = -3 Query: 24 YTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 326 + WKI ++E AE I ITS FYT+ GY+M +++YP GDGVGKG +LSV+F L RG +D L+WPF KVT+ I HS+ D +S Sbjct: 307 FIWKIERFSELKSEAERGNRISITSDYFYTKEFGYKMSMKIYPAGDGVGKGTHLSVFFTLMRGEFDDLLQWPFKNKVTLTILDQKNKTNDHSDTFKPDVRS 407
BLAST of SMED30018063 vs. TrEMBL
Match: A0A401Q9D5 (MATH domain-containing protein OS=Scyliorhinus torazame OX=75743 GN=scyTo_0021488 PE=4 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.135e-16 Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = -3 Query: 24 TWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 323 WKI + + + A KI+ + S FYT GY+M RVY NGDG+GKG +LS++F++ RG YD L WPF +KVT+ + G ++ ++ DP S Sbjct: 29 VWKIRDYTRQKQEAVSGKILSLYSQPFYTSPFGYKMCARVYLNGDGMGKGTHLSLFFVVMRGEYDPLLPWPFRQKVTLALLDQGPSKKHMTDMFKPDPDS 128
BLAST of SMED30018063 vs. TrEMBL
Match: A0A2T7NN15 (Uncharacterized protein OS=Pomacea canaliculata OX=400727 GN=C0Q70_18362 PE=4 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.212e-16 Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WKI + K + A K+ I S FYT + GY+M R+YPNGDG+GKG +LS++F+L RG YD L WPF +KVT+++ K+ E + DP S Sbjct: 400 WKISDFDRKRRDAISGKVTSIYSPAFYTGVVGYKMCARIYPNGDGMGKGTHLSLFFVLMRGHYDSLLPWPFQQKVTLMLID-QKYREHVVDAFRPDPTS 497
BLAST of SMED30018063 vs. Ensembl Cavefish
Match: ENSAMXT00000035169.1 (pep primary_assembly:Astyanax_mexicanus-2.0:9:3354744:3362219:1 gene:ENSAMXG00000029095.1 transcript:ENSAMXT00000035169.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 85.1149 bits (209), Expect = 2.756e-19 Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WKI + + A K + + S FYT GY+M RVY NGDG+GKG +LS++F++ RG YD L WPF +KVT+++ G + + DP S Sbjct: 8 WKIRDYKRRKAEAVASKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVVMRGEYDALLPWPFKQKVTLMLMDQGPARKHLGDAFKPDPNS 106
BLAST of SMED30018063 vs. Ensembl Cavefish
Match: traf2a (TNF receptor-associated factor 2-like [Source:NCBI gene;Acc:103036375]) HSP 1 Score: 83.1889 bits (204), Expect = 7.370e-17 Identity = 35/81 (43.21%), Postives = 55/81 (67.90%), Query Frame = -3 Query: 84 YTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILI 326 + WKI +++K + A + + S FYT GY+M LR+Y NGDG G+G +LS++F++ RG D L+WPFN+KVT+++ Sbjct: 312 FVWKISDFSKKRQDAVAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMRGHSDALLKWPFNQKVTLML 392
BLAST of SMED30018063 vs. Ensembl Cavefish
Match: traf2a (TNF receptor-associated factor 2-like [Source:NCBI gene;Acc:103036375]) HSP 1 Score: 83.1889 bits (204), Expect = 8.758e-17 Identity = 35/81 (43.21%), Postives = 55/81 (67.90%), Query Frame = -3 Query: 84 YTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILI 326 + WKI +++K + A + + S FYT GY+M LR+Y NGDG G+G +LS++F++ RG D L+WPFN+KVT+++ Sbjct: 425 FVWKISDFSKKRQDAVAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMRGHSDALLKWPFNQKVTLML 505
BLAST of SMED30018063 vs. Ensembl Cavefish
Match: traf2b (TNF receptor associated factor 2 [Source:NCBI gene;Acc:103028261]) HSP 1 Score: 81.6481 bits (200), Expect = 2.377e-16 Identity = 33/81 (40.74%), Postives = 56/81 (69.14%), Query Frame = -3 Query: 84 YTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILI 326 + WKI ++ + + A + + S FY+ GY+M LR+Y NGDG G+G +LS++F++ RG+YD L+WPF++KVT+++ Sbjct: 384 FVWKISDFSRRRQDALAGRAPAMFSPAFYSSKYGYKMCLRLYLNGDGTGRGSHLSLFFVVMRGKYDALLKWPFSQKVTLML 464
BLAST of SMED30018063 vs. Ensembl Cavefish
Match: traf1 (TNF receptor-associated factor 1-like [Source:NCBI gene;Acc:103045252]) HSP 1 Score: 71.2478 bits (173), Expect = 5.463e-13 Identity = 32/88 (36.36%), Postives = 53/88 (60.23%), Query Frame = -3 Query: 63 YTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWE 326 + W+I ++K+K A + S FYT G+++ +R+Y GDGVGKG ++S++F++ +G YD L WPF +KVT + + E Sbjct: 371 FLWRICDVSQKLKEAATGQKSSQYSPAFYTSRYGFKVCMRLYMYGDGVGKGTHISLFFVIMKGDYDPLLSWPFKQKVTFFLIDQNQRE 458
BLAST of SMED30018063 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002130.1 (pep scaffold:Pmarinus_7.0:GL484662:8457:12718:-1 gene:ENSPMAG00000001936.1 transcript:ENSPMAT00000002130.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 91.6633 bits (226), Expect = 1.737e-20 Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WKI +A + + A + + + S FYT GY+M R Y NGDGVG+G +LS++F++ RG YD LEWPF R+VT+ + G S+ DP S Sbjct: 272 WKIRDYARRKQEAASGRTLSLYSQPFYTSPFGYKMCARAYLNGDGVGRGTHLSLFFVVMRGEYDALLEWPFRRRVTLSLLDQGAARRHLSDTFTPDPAS 370
BLAST of SMED30018063 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000074.1 (pep scaffold:Pmarinus_7.0:GL482142:165593:173010:-1 gene:ENSPMAG00000000066.1 transcript:ENSPMAT00000000074.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 89.3521 bits (220), Expect = 1.495e-19 Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WKI +A + + A + + + S FYT GYRM R Y NGDGVG+G +LS++F++ RG YD L WPF ++VT+ + G + S+ DP S Sbjct: 329 WKIRDYARRKQDAVSGRTLSLYSQPFYTSPFGYRMCARAYLNGDGVGRGTHLSLFFVVMRGEYDALLPWPFRQRVTLTLLDQGAARRQLSDTFKPDPAS 427
BLAST of SMED30018063 vs. Ensembl Nematostella
Match: EDO49464 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RG36]) HSP 1 Score: 77.0258 bits (188), Expect = 2.976e-15 Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = -3 Query: 90 YTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTI 326 Y WKI + + + K I S FY GY+ RVYPNGDG+GKG +LS++F+L RG +D L WPF +KVT Sbjct: 380 YIWKIDEYTRRYQEGVSGKTPSIYSPPFYVGRYGYKACARVYPNGDGMGKGSHLSLFFVLMRGEFDALLPWPFRQKVTF 458
BLAST of SMED30018063 vs. Ensembl Nematostella
Match: EDO41243 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S4Z7]) HSP 1 Score: 75.485 bits (184), Expect = 7.843e-15 Identity = 36/108 (33.33%), Postives = 61/108 (56.48%), Query Frame = -3 Query: 9 YTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNR--KVTILIAKPGKWEERHSEKLGVDPKSMISHH 326 + W+I +A+ ++ A+ + + S F+TE GY+++ +YPNG GK ++S + + RG YDG L WPF R K+T+L K + R+ EK + S+ + H Sbjct: 320 FVWRIPDFADSLRQAKLGLKVRLDSEPFFTEKNGYKLRATLYPNGTMSGKNTHISAFVSINRGEYDGILAWPFTRVIKITLLDQKENVLQRRNVEKTIIPNPSLENFH 427
BLAST of SMED30018063 vs. Ensembl Nematostella
Match: EDO35237 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SM27]) HSP 1 Score: 75.485 bits (184), Expect = 9.726e-15 Identity = 37/102 (36.27%), Postives = 51/102 (50.00%), Query Frame = -3 Query: 21 YTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKSM 326 + WKI + E+ A+ I S FYT GY++ R++PNGDG + YLS++ L RG YD L WPF +TI + SE DP S+ Sbjct: 382 FLWKIDKFTERYAEAKSGNATSIYSSPFYTHRFGYKLCARLFPNGDGSARDNYLSIFIALMRGEYDSILPWPFQETITITLIDQDNGMNI-SETFDPDPCSI 482
BLAST of SMED30018063 vs. Ensembl Nematostella
Match: EDO38873 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SBN4]) HSP 1 Score: 75.0998 bits (183), Expect = 1.323e-14 Identity = 31/79 (39.24%), Postives = 49/79 (62.03%), Query Frame = -3 Query: 84 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILI 320 WKI A K A ++ S F+T GY+M R+Y NGDG+G+ ++S++F++ RG +D L WPF +KVT+++ Sbjct: 337 WKITNVANKRSEATSGRVTSFYSPCFFTGPHGYKMCARIYLNGDGMGRNHHVSLFFVIMRGEFDALLRWPFRQKVTLML 415
BLAST of SMED30018063 vs. Ensembl Nematostella
Match: EDO29145 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T4G8]) HSP 1 Score: 66.6254 bits (161), Expect = 6.825e-14 Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = -3 Query: 84 YTWKIGGWA----EKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILI 326 + WKI + + V S EE + I S FYT GY+++L+ Y NG GKG +LS+Y ++ +G YD LEWPF +K+T + Sbjct: 4 FLWKISNYKHQYDQAVASPEE---LAIFSPPFYTSQYGYKLRLKAYLNGRDRGKGTHLSLYIIIMKGDYDALLEWPFKQKITFYL 85
BLAST of SMED30018063 vs. Ensembl Medaka
Match: traf3 (TNF receptor associated factor 3 [Source:NCBI gene;Acc:101161601]) HSP 1 Score: 85.1149 bits (209), Expect = 1.330e-17 Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = -3 Query: 24 WKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKS 320 WKI + + + A K + + S FYT GY+M RVY NGDG+GKG +LS++F++ RG YD L WPF +KVT+++ G + + DP S Sbjct: 302 WKIRDYKRRKQDAVAGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVVMRGEYDALLPWPFKQKVTLMLMDQGPSRKHLGDAFKPDPSS 400
BLAST of SMED30018063 vs. Ensembl Medaka
Match: ENSORLT00000020861.2 (TNF receptor-associated factor 2 [Source:NCBI gene;Acc:101167626]) HSP 1 Score: 83.1889 bits (204), Expect = 9.997e-17 Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = -3 Query: 84 YTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILI 326 + WKI + +K + A + + S FYT GY+M LR+Y NGDG G+G +LS++F++ RG D L+WPFN+KVT+++ Sbjct: 422 FIWKISDFTKKRQDAMAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMRGHSDALLKWPFNQKVTLML 502
BLAST of SMED30018063 vs. Ensembl Medaka
Match: unm_sa808 (TNF receptor-associated factor 2 [Source:NCBI gene;Acc:101155367]) HSP 1 Score: 82.8037 bits (203), Expect = 1.393e-16 Identity = 35/81 (43.21%), Postives = 55/81 (67.90%), Query Frame = -3 Query: 84 YTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILI 326 + W+I +A+K + A + + S FYT GY+M LR+Y NGDG G+G +LS++F++ RG D L+WPFN+KVT+++ Sbjct: 449 FIWRISDFAKKRQDAVAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMRGLSDALLKWPFNQKVTLML 529
BLAST of SMED30018063 vs. Ensembl Medaka
Match: traf2b (TNF receptor associated factor 2 [Source:NCBI gene;Acc:101159764]) HSP 1 Score: 79.337 bits (194), Expect = 1.283e-15 Identity = 32/81 (39.51%), Postives = 55/81 (67.90%), Query Frame = -3 Query: 84 YTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILI 326 + WKI ++ + + A + + S FY+ GY+M LR+Y NGDG G+G +LS++F++ R +YD L+WPF++KVT+++ Sbjct: 369 FVWKITDFSHRRQEAVSGRAPAMFSPAFYSSKYGYKMCLRLYLNGDGTGRGTHLSLFFVVMRSKYDALLKWPFSQKVTLML 449
BLAST of SMED30018063 vs. Ensembl Medaka
Match: traf2b (TNF receptor associated factor 2 [Source:NCBI gene;Acc:101159764]) HSP 1 Score: 79.337 bits (194), Expect = 1.339e-15 Identity = 32/81 (39.51%), Postives = 55/81 (67.90%), Query Frame = -3 Query: 84 YTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILI 326 + WKI ++ + + A + + S FY+ GY+M LR+Y NGDG G+G +LS++F++ R +YD L+WPF++KVT+++ Sbjct: 376 FVWKITDFSHRRQEAVSGRAPAMFSPAFYSSKYGYKMCLRLYLNGDGTGRGTHLSLFFVVMRSKYDALLKWPFSQKVTLML 456
BLAST of SMED30018063 vs. Planmine SMEST
Match: SMESG000019863.1 (SMESG000019863.1) HSP 1 Score: 224.172 bits (570), Expect = 4.382e-64 Identity = 103/106 (97.17%), Postives = 104/106 (98.11%), Query Frame = -3 Query: 12 PYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKSMISH 329 PYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTI IAKPGKWEERHSEKLGVDP+SMIS Sbjct: 989 PYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTISIAKPGKWEERHSEKLGVDPRSMISQ 1094 HSP 2 Score: 69.707 bits (169), Expect = 2.529e-12 Identity = 34/101 (33.66%), Postives = 60/101 (59.41%), Query Frame = -3 Query: 27 PYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPK 329 P+ WKI +AEK++ A++ + S Y+ GY++ +R+YPNGDG G ++SV+ + +G YD L WPF K +++ G+ + R+ + G +P+ Sbjct: 4856 PFIWKITEFAEKLQRAKDGTQRILDSPPIYSWENGYKLGIRLYPNGDGNATGTHISVFVRVGKGDYDELLTWPF--KQNMILTMKGQEDYRNPIRTGNEPQ 4954
BLAST of SMED30018063 vs. Planmine SMEST
Match: SMESG000019863.1 (SMESG000019863.1) HSP 1 Score: 224.172 bits (570), Expect = 4.513e-64 Identity = 103/106 (97.17%), Postives = 104/106 (98.11%), Query Frame = -3 Query: 12 PYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKSMISH 329 PYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTI IAKPGKWEERHSEKLGVDP+SMIS Sbjct: 989 PYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTISIAKPGKWEERHSEKLGVDPRSMISQ 1094 HSP 2 Score: 69.707 bits (169), Expect = 2.598e-12 Identity = 34/101 (33.66%), Postives = 60/101 (59.41%), Query Frame = -3 Query: 27 PYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPK 329 P+ WKI +AEK++ A++ + S Y+ GY++ +R+YPNGDG G ++SV+ + +G YD L WPF K +++ G+ + R+ + G +P+ Sbjct: 4917 PFIWKITEFAEKLQRAKDGTQRILDSPPIYSWENGYKLGIRLYPNGDGNATGTHISVFVRVGKGDYDELLTWPF--KQNMILTMKGQEDYRNPIRTGNEPQ 5015
BLAST of SMED30018063 vs. Planmine SMEST
Match: SMESG000019863.1 (SMESG000019863.1) HSP 1 Score: 223.787 bits (569), Expect = 6.111e-64 Identity = 103/106 (97.17%), Postives = 104/106 (98.11%), Query Frame = -3 Query: 12 PYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKSMISH 329 PYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTI IAKPGKWEERHSEKLGVDP+SMIS Sbjct: 989 PYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTISIAKPGKWEERHSEKLGVDPRSMISQ 1094 HSP 2 Score: 69.707 bits (169), Expect = 2.782e-12 Identity = 34/101 (33.66%), Postives = 60/101 (59.41%), Query Frame = -3 Query: 27 PYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPK 329 P+ WKI +AEK++ A++ + S Y+ GY++ +R+YPNGDG G ++SV+ + +G YD L WPF K +++ G+ + R+ + G +P+ Sbjct: 4766 PFIWKITEFAEKLQRAKDGTQRILDSPPIYSWENGYKLGIRLYPNGDGNATGTHISVFVRVGKGDYDELLTWPF--KQNMILTMKGQEDYRNPIRTGNEPQ 4864
BLAST of SMED30018063 vs. Planmine SMEST
Match: SMESG000010523.1 (SMESG000010523.1) HSP 1 Score: 220.705 bits (561), Expect = 5.215e-63 Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = -3 Query: 12 PYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKSMISH 329 PYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTI IAKPGKWEERHSEKLG+DP SMIS Sbjct: 322 PYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTISIAKPGKWEERHSEKLGMDPGSMISQ 427 HSP 2 Score: 71.2478 bits (173), Expect = 7.937e-13 Identity = 35/101 (34.65%), Postives = 60/101 (59.41%), Query Frame = -3 Query: 27 PYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPK 329 P+ WKI +AEK++ A++ + S Y+ GY++ +R+YPNGDG G ++SV+ + RG YD L WPF K +++ G+ + R+ + G +P+ Sbjct: 4083 PFIWKITEFAEKLQRAKDGTQRILDSPPIYSWENGYKLGIRLYPNGDGNATGTHISVFIRVGRGDYDELLTWPF--KQNMILTMKGQEDYRNPIRTGNEPQ 4181
BLAST of SMED30018063 vs. Planmine SMEST
Match: SMESG000010523.1 (SMESG000010523.1) HSP 1 Score: 220.705 bits (561), Expect = 5.216e-63 Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = -3 Query: 12 PYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPKSMISH 329 PYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTI IAKPGKWEERHSEKLG+DP SMIS Sbjct: 322 PYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTISIAKPGKWEERHSEKLGMDPGSMISQ 427 HSP 2 Score: 71.2478 bits (173), Expect = 7.938e-13 Identity = 35/101 (34.65%), Postives = 60/101 (59.41%), Query Frame = -3 Query: 27 PYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTILIAKPGKWEERHSEKLGVDPK 329 P+ WKI +AEK++ A++ + S Y+ GY++ +R+YPNGDG G ++SV+ + RG YD L WPF K +++ G+ + R+ + G +P+ Sbjct: 4085 PFIWKITEFAEKLQRAKDGTQRILDSPPIYSWENGYKLGIRLYPNGDGNATGTHISVFIRVGRGDYDELLTWPF--KQNMILTMKGQEDYRNPIRTGNEPQ 4183 The following BLAST results are available for this feature:
BLAST of SMED30018063 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of SMED30018063 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 2
BLAST of SMED30018063 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of SMED30018063 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of SMED30018063 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of SMED30018063 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of SMED30018063 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of SMED30018063 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30018063 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of SMED30018063 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of SMED30018063 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30018063 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of SMED30018063 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of SMED30018063 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30018063 ID=SMED30018063|Name=SMED30018063|organism=Schmidtea mediterranea sexual|type=transcript|length=1291bpback to top Annotated Terms
The following terms have been associated with this transcript:
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