PUM-HD domain-containing protein

Overview
NamePUM-HD domain-containing protein
Smed IDSMED30018034
Length (bp)1859
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of PUM-HD domain-containing protein (SMED30018034) t-SNE clustered cells

Violin plots show distribution of expression levels for PUM-HD domain-containing protein (SMED30018034) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of PUM-HD domain-containing protein (SMED30018034) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for PUM-HD domain-containing protein (SMED30018034) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30018034

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30018034SMESG000023171.1 SmedASXL_013930SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
reproductive organSMED30018034SMESG000023171.1 Contig4796newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30018034SMESG000023171.1 Contig4796uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30018034SMESG000071857.1 SMESG000020397.1 Contig4796newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30018034SMESG000071857.1 SMESG000020397.1 Contig4796uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
zeta neoblastSMED30018034SMESG000023171.1 dd_Smed_v4_7389_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Human
Match: PUM3 (pumilio RNA binding family member 3 [Source:HGNC Symbol;Acc:HGNC:29676])

HSP 1 Score: 165.236 bits (417), Expect = 7.370e-43
Identity = 145/567 (25.57%), Postives = 271/567 (47.80%), Query Frame = 2 
Query:  143 IWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFN--DGKEIKHLSDFTSKSNFDMTILNNIHKVILPIIRKQQ-IDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSESDLKRKLKTETKAVVKKKIKMFTGKFQKADNEMEVDEVPEETGTIIEGHLLESFTGSLIGKSLCNLEKDGKIEGFSDLCIEKFSPENLISFINSNRSAFFLVSLFEIGKETVQNFLKQLFQS--SQEEMSKSDLVGVKILYKHL 1828
            +WE LR+K+   +++ +L   +  + +  I  +     + RV +  I++G +E R   FE ++ D++ L    YS  +VK  L +G+K Q   +     GH+  +++HA AS +VE AYN+ A  +QR+ + +E YG TF L+   D + +  + +   +   ++ I++ + +++ P+ +K+  I  +LV  +  ++              A P   L +E+IE I E ++ L +T +G +VA+      + K RK I++++K  +        ++L +L   D  DDTK++ + +   I+ +L  I N   GRK++ ++++ RD       ++++L++GDGN  SKKD+ +R +E+LE  +  LL +L  +  + +   S  +LV  I+       D   T+  N + S+      P                            GK    D E+ + E P        GHL+  +   LI +    ++++G+   F+   +E    +NL S+ + NR A  L SL +     V N +K   +S     E +KS   G++IL + L
Sbjct:  141 MWEILRRKDCDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCYIQYGNEEQRKQAFEELRDDLVELSKAKYSRNIVKKFLMYGSKPQIAEIIRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSADHRTLDKVLEVQPE-KLEL-IMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFT-----------YAPP--KLRSEMIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISEIISSLPSIVNDKYGRKVLLYLLSPRDPAHTVREIIEVLQKGDGNAHSKKDTEVRRRELLESISPALLSYLQEHAQEVVLDKSACVLVSDILGSATG--DVQPTM--NAIASLAATGLHP---------------------------GGK----DGELHIAEHP-------AGHLVLKW---LIEQDK-KMKENGREGCFAKTLVEHVGMKNLKSWASVNRGAIILSSLLQSCDLEVANKVKAALKSLIPTLEKTKSTSKGIEILLEKL 646
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Human
Match: PUM1 (pumilio RNA binding family member 1 [Source:HGNC Symbol;Acc:HGNC:14957])

HSP 1 Score: 51.9878 bits (123), Expect = 3.573e-6
Identity = 28/116 (24.14%), Postives = 55/116 (47.41%), Query Frame = 2 
Query:  230 IADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFND 577
            I +  Q +  +R  +  +E      R  +F  I +    L    +  +V++   +FG+ +Q+LA+ + + GH++ L    Y  +V++ A  EF  S Q++ M++E  G       D
Sbjct:  853 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKAL-EFIPSDQQNEMVRELDGHVLKCVKD 967
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Human
Match: PUM2 (pumilio RNA binding family member 2 [Source:HGNC Symbol;Acc:HGNC:14958])

HSP 1 Score: 50.8322 bits (120), Expect = 6.764e-6
Identity = 29/108 (26.85%), Postives = 54/108 (50.00%), Query Frame = 2 
Query:  230 IADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYG 553
            I +  Q +  +R  +  +E      R  +F  I +    L T  +  +V++   +FG+ DQ+LA+   + GH++ L    Y  +V++ A  E  +S Q+S M++E  G
Sbjct:  543 IVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKAL-ESISSDQQSEMVKELDG 649
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Human
Match: PUM2 (pumilio RNA binding family member 2 [Source:HGNC Symbol;Acc:HGNC:14958])

HSP 1 Score: 50.8322 bits (120), Expect = 7.013e-6
Identity = 29/108 (26.85%), Postives = 54/108 (50.00%), Query Frame = 2 
Query:  230 IADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYG 553
            I +  Q +  +R  +  +E      R  +F  I +    L T  +  +V++   +FG+ DQ+LA+   + GH++ L    Y  +V++ A  E  +S Q+S M++E  G
Sbjct:  675 IVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKAL-ESISSDQQSEMVKELDG 781
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Human
Match: PUM2 (pumilio RNA binding family member 2 [Source:HGNC Symbol;Acc:HGNC:14958])

HSP 1 Score: 50.8322 bits (120), Expect = 7.297e-6
Identity = 29/108 (26.85%), Postives = 54/108 (50.00%), Query Frame = 2 
Query:  230 IADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYG 553
            I +  Q +  +R  +  +E      R  +F  I +    L T  +  +V++   +FG+ DQ+LA+   + GH++ L    Y  +V++ A  E  +S Q+S M++E  G
Sbjct:  596 IVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKAL-ESISSDQQSEMVKELDG 702
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Celegans
Match: puf-12 (Pumilio domain-containing protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q09622])

HSP 1 Score: 144.821 bits (364), Expect = 4.075e-36
Identity = 106/395 (26.84%), Postives = 195/395 (49.37%), Query Frame = 2 
Query:  143 IWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSD-FTSKSNFDMTILNNIHKVILPIIRKQQIDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLSYD 1324
            +WE++R        K     ++  + K   A L+    T+RV E ++    +     +F  +  +I+ +    YS F VK MLK GTK+QR  + +   GH   L++  +A++V+E AYN+FAN+ QR ++I EFYGK F LF +   I+ L++    K    + IL ++ +VI  +  K+ + L+++  ++ ++ +   +  + N       +SL ++I E I        +T +G K+AI L     +K RK I+++ K++ V        +  +L + D  DDT +LNK +   +   +  +     G K+I ++V+ RD + +    +  L +GD N  SKK    R  ++    T+ L  +L  N  + +  ++K   V + +    S+D
Sbjct:  253 LWEKIRMGKTPKAEKDTAVHELYGLVKGHAAKLIYAHDTSRVIECLVATEREGIINNLFNELTPEIVRMSKNVYSKFFVKKMLKNGTKEQRDIIINAFRGHAPTLLRIKHAAEVLEYAYNDFANAHQRYNIITEFYGKEFILFRED-NIRSLTEILAEKPEKKVVILKHLDEVIGAVNEKETLRLSILHKLMLDFFDNCDEEKKINL-----LDSLKDKIPEFI--------HTPDGAKLAIKLIWFAPVKERKLIVKNFKDLSVKAAMEHYGHRVLLALFDTVDDTVLLNKVIVSELANEMKKLIEDDWGEKVIHYLVHPRDGRGIDKREITFLAEGDSNPHSKKTQKDRYGQLYAGITENLYPYLAANFEELVFEANKSKFVAACLETTSSFD 633
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Fly
Match: peng (gene:FBgn0015527 transcript:FBtr0077223)

HSP 1 Score: 144.05 bits (362), Expect = 9.231e-36
Identity = 105/374 (28.07%), Postives = 190/374 (50.80%), Query Frame = 2 
Query:  122 ISKEIILIWEELRQKNVKTDRKFELCDKIISV--SKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSD-FTSKSNFDMTILNNIHKVILPIIRKQQIDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQ 1234
            ISKE   I E+LR +  +T+ K +L ++I  V      I+ +V+   TARV +S++++     R  I E +    + +C   Y+ F V+ MLK+G    +  + D L GHIV L  H+  S ++++ Y + A   QR +M QEFYG  +    D   +K LSD +   +N   +IL ++   +  +  KQ +D  LV  ++ EY    ++   E+       E  L E +      +  + +T+EG++ A+  F++ + K R+ II+++KE ++    H   ++F++++L+  DDTK   K +   +  +L  + +   GR++I ++V   D        +  +++G      KK+  +R KEILE    P+ Q
Sbjct:  136 ISKEANQIHEKLRCR--RTENKDKLVEQIYKVLNVGDTISKVVKAHDTARVIQSMLKYASPALRAEISEKLLPFTVEMCQSKYAQFCVQRMLKYGAPATKAKLVDSLYGHIVRLAGHSIGSGLLDSMY-QSATPNQRIYMRQEFYGDLYRKAKD-SNVKTLSDTYKEATNMKASILGSVKANLDHVANKQLVDSALVHAVMLEY----LRACDED-------EEKLEETVTAFAALVPHMLSTKEGSEAAVICFYKSTPKNRRAIIKNIKEHLLKIANHEHGHVFLISLLNALDDTKATKKAIYDHLHGDLKALMSSPYGRRVIQWLVAPGDTTCFHPEFIRTVEEGLA--FGKKEKELRRKEILEQIEAPIAQ 492
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Zebrafish
Match: pum3 (Danio rerio pumilio RNA-binding family member 3 (pum3), mRNA. [Source:RefSeq mRNA;Acc:NM_001353848])

HSP 1 Score: 175.252 bits (443), Expect = 1.105e-46
Identity = 143/570 (25.09%), Postives = 265/570 (46.49%), Query Frame = 2 
Query:  143 IWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSDFTSKSNFDMTILNNIHKVILPIIRKQQ-IDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSESDLKRKLKTETKAVVKKKIKMFTGKFQKADNEMEVDEVPEETGTIIEGHLLESFTGSLIGKSLCNLEKDGKI------EGFSDLCIEKFSPENLISFINSNRSAFFLVSLFEIGKETVQNFLKQLFQSSQEEMSK-SDLVGVKILYKHL 1828
            +WE +R+K+    ++ +L  ++  + K  I  +     + RV +  I+FG D+ R  +F+ +K+ I+ L    Y+  +VK  L +G+K+Q   V     G +  +++H+ AS VVE AYN+ A   QR  + +E YG TF +              +      +IL+ + +++ P+ +K+  I  +LV  +  ++         E+A      +    E+IE I E ++ + +T +G +V +      + K RK I++++K  I        A+L +L   D  DDTK++ + +   ++ +L  I ++ +G+K++ ++++ RD   L   ++ +L++GDGN  SKKD +IR KE+LE A+  LL  L  N    +   S  ++V  I+   +             M+++   A+ PLI    D                     G+                       H+ E   G L+ K L  +E+D K+      E FS + +EK   ENL ++ + NR A  L  L +   E+V   +K + +SS  E+ +  +  G+++L + L
Sbjct:  124 VWEMVRRKDCDKQKRTKLMKELQDLVKGKIKTIAFAHDSTRVLQCFIQFGSDKQRKEVFDELKEHIVELSKSKYARNIVKKFLMYGSKEQVGEVMLAFKGKVRQMLRHSEASSVVEYAYNDKAILSQRLMLTEELYGNTFTVLKSSVCPTLEKVLEANPGKLESILDEMKQILTPMAQKEAVIKHSLVHKVFLDFF--------EHAP-----DKQRTEMIESIREAVVYMAHTHDGARVTMHCLWHGTTKDRKVIVKTMKSYIAKFAMGEYAHLVLLAAFDCIDDTKLVKQIIISEMVSSLSEIISNKHGKKVLLYLLSPRDPAHLLPEIIQVLEKGDGNAHSKKDVLIRRKELLEAASPSLLNHLCENAQSMVMDKSCCVVVSDILGSAVGD-------LRPAMEAVAALADGPLIPGGKD---------------------GQL----------------------HMAEHPAGHLVLKWL--IEQDTKMKDTEREERFSRILLEKVGLENLKTWASVNRGAIILCCLLQSADESVAEEVKAMLKSSIPELQRLQNSKGIEVLLEKL 628
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Zebrafish
Match: pum3 (Danio rerio pumilio RNA-binding family member 3 (pum3), mRNA. [Source:RefSeq mRNA;Acc:NM_001353848])

HSP 1 Score: 175.252 bits (443), Expect = 1.105e-46
Identity = 143/570 (25.09%), Postives = 265/570 (46.49%), Query Frame = 2 
Query:  143 IWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSDFTSKSNFDMTILNNIHKVILPIIRKQQ-IDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSESDLKRKLKTETKAVVKKKIKMFTGKFQKADNEMEVDEVPEETGTIIEGHLLESFTGSLIGKSLCNLEKDGKI------EGFSDLCIEKFSPENLISFINSNRSAFFLVSLFEIGKETVQNFLKQLFQSSQEEMSK-SDLVGVKILYKHL 1828
            +WE +R+K+    ++ +L  ++  + K  I  +     + RV +  I+FG D+ R  +F+ +K+ I+ L    Y+  +VK  L +G+K+Q   V     G +  +++H+ AS VVE AYN+ A   QR  + +E YG TF +              +      +IL+ + +++ P+ +K+  I  +LV  +  ++         E+A      +    E+IE I E ++ + +T +G +V +      + K RK I++++K  I        A+L +L   D  DDTK++ + +   ++ +L  I ++ +G+K++ ++++ RD   L   ++ +L++GDGN  SKKD +IR KE+LE A+  LL  L  N    +   S  ++V  I+   +             M+++   A+ PLI    D                     G+                       H+ E   G L+ K L  +E+D K+      E FS + +EK   ENL ++ + NR A  L  L +   E+V   +K + +SS  E+ +  +  G+++L + L
Sbjct:  124 VWEMVRRKDCDKQKRTKLMKELQDLVKGKIKTIAFAHDSTRVLQCFIQFGSDKQRKEVFDELKEHIVELSKSKYARNIVKKFLMYGSKEQVGEVMLAFKGKVRQMLRHSEASSVVEYAYNDKAILSQRLMLTEELYGNTFTVLKSSVCPTLEKVLEANPGKLESILDEMKQILTPMAQKEAVIKHSLVHKVFLDFF--------EHAP-----DKQRTEMIESIREAVVYMAHTHDGARVTMHCLWHGTTKDRKVIVKTMKSYIAKFAMGEYAHLVLLAAFDCIDDTKLVKQIIISEMVSSLSEIISNKHGKKVLLYLLSPRDPAHLLPEIIQVLEKGDGNAHSKKDVLIRRKELLEAASPSLLNHLCENAQSMVMDKSCCVVVSDILGSAVGD-------LRPAMEAVAALADGPLIPGGKD---------------------GQL----------------------HMAEHPAGHLVLKWL--IEQDTKMKDTEREERFSRILLEKVGLENLKTWASVNRGAIILCCLLQSADESVAEEVKAMLKSSIPELQRLQNSKGIEVLLEKL 628
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Zebrafish
Match: pum3 (Danio rerio pumilio RNA-binding family member 3 (pum3), mRNA. [Source:RefSeq mRNA;Acc:NM_001353848])

HSP 1 Score: 160.229 bits (404), Expect = 1.335e-41
Identity = 111/423 (26.24%), Postives = 210/423 (49.65%), Query Frame = 2 
Query:  143 IWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSDFTSKSNFDMTILNNIHKVILPIIRKQQ-IDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSESD 1408
            +WE +R+K+    ++ +L  ++  + K  I  +     + RV +  I+FG D+ R  +F+ +K+ I+ L    Y+  +VK  L +G+K+Q   V     G +  +++H+ AS VVE AYN+ A   QR  + +E YG TF +              +      +IL+ + +++ P+ +K+  I  +LV  +  ++         E+A      +    E+IE I E ++ + +T +G +V +      + K RK I++++K  I        A+L +L   D  DDTK++ + +   ++ +L  I ++ +G+K++ ++++ RD   L   ++ +L++GDGN  SKKD +IR KE+LE A+  LL  L  N    +   S  ++V  I+   +             M+++   A+ PLI    D
Sbjct:  124 VWEMVRRKDCDKQKRTKLMKELQDLVKGKIKTIAFAHDSTRVLQCFIQFGSDKQRKEVFDELKEHIVELSKSKYARNIVKKFLMYGSKEQVGEVMLAFKGKVRQMLRHSEASSVVEYAYNDKAILSQRLMLTEELYGNTFTVLKSSVCPTLEKVLEANPGKLESILDEMKQILTPMAQKEAVIKHSLVHKVFLDFF--------EHAP-----DKQRTEMIESIREAVVYMAHTHDGARVTMHCLWHGTTKDRKVIVKTMKSYIAKFAMGEYAHLVLLAAFDCIDDTKLVKQIIISEMVSSLSEIISNKHGKKVLLYLLSPRDPAHLLPEIIQVLEKGDGNAHSKKDVLIRRKELLEAASPSLLNHLCENAQSMVMDKSCCVVVSDILGSAVGD-------LRPAMEAVAALADGPLIPGGKD 526
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Xenopus
Match: pum3 (pumilio RNA binding family member 3 [Source:NCBI gene;Acc:100038289])

HSP 1 Score: 164.081 bits (414), Expect = 1.292e-42
Identity = 137/548 (25.00%), Postives = 246/548 (44.89%), Query Frame = 2 
Query:  143 IWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSDFTSKSNFDMTILNNIHKVILPIIRKQQ-IDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSESDLKRKLKTETKAVVKKKIKMFTGKFQKADNEMEVDEVPEETGTIIEGHLLESFTGSLIGKSLCNLEKDGKIEG----FSDLCIEKFSPENLISFINSNRSAFFLVSLFEIGKE----TVQNFLKQL 1759
            IWE +R+K+    ++ +L D +  V    +  +     T RV +  I+ G +E R  +FE +K+ I+ L    Y+  +V+  L +G+K Q   +     G +  L++H+ AS +VE AYN  A  +QR+ + +E YG TF  +             ++     +IL+ + ++++P+ +K+  I  +LV  +  ++ +     IR             +E+IE I E ++ + +T +G +V +      + K RK I +++K  I        ++L +L + D  DDTK+L + +   ++ +L  I N   GRK++ +++N R+       ++++LK+GD N  SKKD  +R  E+LE  + PLL++L  +I D +  ++   +V SI+  C   D +       +M +I   A E  +                                             G   + H+ E   G L+ K L   +KD K +G    F+   ++  S E L  +   NR A  L  L +   E     V+N LK L
Sbjct:  135 IWETIRRKDCDGKKRSKLMDDLEKVLHGNVKSIAFAHDTTRVIQCYIKHGNEERRQQVFEELKEHIVDLSKSKYARNIVRKFLMYGSKAQVAEIIKSFKGQVKKLLRHSEASYIVEYAYNHKAILEQRNMLCEELYGNTFRFYKSAIHPSLDQVLEAQPEKKDSILDEMKQILVPLGQKEAVIKHSLVHKVYLDFFSNASPKIR-------------SEMIEAIREAVVYIIHTHDGARVGMHSVWHGTPKDRKVIAKTMKTYIEKIATGEFSHLVLLAMFDCVDDTKLLKQLILSELISSLPSIINDKYGRKVLLYLLNWRNPAHFVPEIVEVLKKGDDNAHSKKDPTVRQHELLESISPPLLKYLEEHIQDVVLQNALCGMVTSILL-CALGDPQP------VMNAIASMAAEEFVPG-------------------------------------------GKEGQLHIAEHPAGHLVLKWLLKQDKDMKEKGKEGCFARTLVDHVSIEKLSQWAQVNRGAIVLCCLLQSSDEEIAAQVKNGLKGL 619
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Xenopus
Match: pum3 (pumilio RNA binding family member 3 [Source:NCBI gene;Acc:100038289])

HSP 1 Score: 148.673 bits (374), Expect = 4.151e-38
Identity = 98/355 (27.61%), Postives = 183/355 (51.55%), Query Frame = 2 
Query:  257 TARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSDFTSKSNFDMTILNNIHKVILPIIRKQQ-IDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLS 1318
            T RV +  I+ G +E R  +FE +K+ I+ L    Y+  +V+  L +G+K Q   +     G +  L++H+ AS +VE AYN  A  +QR+ + +E YG TF  +             ++     +IL+ + ++++P+ +K+  I  +LV  +  ++ +     IR             +E+IE I E ++ + +T +G +V +      + K RK I +++K  I        ++L +L + D  DDTK+L + +   ++ +L  I N   GRK++ +++N R+       ++++LK+GD N  SKKD  +R  E+LE  + PLL++L  +I D +  ++   +V SI+   L 
Sbjct:   13 TTRVIQCYIKHGNEERRQQVFEELKEHIVDLSKSKYARNIVRKFLMYGSKAQVAEIIKSFKGQVKKLLRHSEASYIVEYAYNHKAILEQRNMLCEELYGNTFRFYKSAIHPSLDQVLEAQPEKKDSILDEMKQILVPLGQKEAVIKHSLVHKVYLDFFSNASPKIR-------------SEMIEAIREAVVYIIHTHDGARVGMHSVWHGTPKDRKVIAKTMKTYIEKIATGEFSHLVLLAMFDCVDDTKLLKQLILSELISSLPSIINDKYGRKVLLYLLNWRNPAHFVPEIVEVLKKGDDNAHSKKDPTVRQHELLESISPPLLKYLEEHIQDVVLQNALCGMVTSILLCALG 354
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Xenopus
Match: pum3 (pumilio RNA binding family member 3 [Source:NCBI gene;Acc:100038289])

HSP 1 Score: 147.517 bits (371), Expect = 8.482e-38
Identity = 98/355 (27.61%), Postives = 183/355 (51.55%), Query Frame = 2 
Query:  257 TARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSDFTSKSNFDMTILNNIHKVILPIIRKQQ-IDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLS 1318
            T RV +  I+ G +E R  +FE +K+ I+ L    Y+  +V+  L +G+K Q   +     G +  L++H+ AS +VE AYN  A  +QR+ + +E YG TF  +             ++     +IL+ + ++++P+ +K+  I  +LV  +  ++ +     IR             +E+IE I E ++ + +T +G +V +      + K RK I +++K  I        ++L +L + D  DDTK+L + +   ++ +L  I N   GRK++ +++N R+       ++++LK+GD N  SKKD  +R  E+LE  + PLL++L  +I D +  ++   +V SI+   L 
Sbjct:   47 TTRVIQCYIKHGNEERRQQVFEELKEHIVDLSKSKYARNIVRKFLMYGSKAQVAEIIKSFKGQVKKLLRHSEASYIVEYAYNHKAILEQRNMLCEELYGNTFRFYKSAIHPSLDQVLEAQPEKKDSILDEMKQILVPLGQKEAVIKHSLVHKVYLDFFSNASPKIR-------------SEMIEAIREAVVYIIHTHDGARVGMHSVWHGTPKDRKVIAKTMKTYIEKIATGEFSHLVLLAMFDCVDDTKLLKQLILSELISSLPSIINDKYGRKVLLYLLNWRNPAHFVPEIVEVLKKGDDNAHSKKDPTVRQHELLESISPPLLKYLEEHIQDVVLQNALCGMVTSILLCALG 388
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Xenopus
Match: pum3 (pumilio RNA binding family member 3 [Source:NCBI gene;Acc:100038289])

HSP 1 Score: 146.362 bits (368), Expect = 3.893e-37
Identity = 94/335 (28.06%), Postives = 174/335 (51.94%), Query Frame = 2 
Query:  257 TARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSDFTSKSNFDMTILNNIHKVILPIIRKQQ-IDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICD 1258
            T RV +  I+ G +E R  +FE +K+ I+ L    Y+  +V+  L +G+K Q   +     G +  L++H+ AS +VE AYN  A  +QR+ + +E YG TF  +             ++     +IL+ + ++++P+ +K+  I  +LV  +  ++ +     IR             +E+IE I E ++ + +T +G +V +      + K RK I +++K  I        ++L +L + D  DDTK+L + +   ++ +L  I N   GRK++ +++N R+       ++++LK+GD N  SKKD  +R  E+LE  + PLL++L  +I D
Sbjct:   42 TTRVIQCYIKHGNEERRQQVFEELKEHIVDLSKSKYARNIVRKFLMYGSKAQVAEIIKSFKGQVKKLLRHSEASYIVEYAYNHKAILEQRNMLCEELYGNTFRFYKSAIHPSLDQVLEAQPEKKDSILDEMKQILVPLGQKEAVIKHSLVHKVYLDFFSNASPKIR-------------SEMIEAIREAVVYIIHTHDGARVGMHSVWHGTPKDRKVIAKTMKTYIEKIATGEFSHLVLLAMFDCVDDTKLLKQLILSELISSLPSIINDKYGRKVLLYLLNWRNPAHFVPEIVEVLKKGDDNAHSKKDPTVRQHELLESISPPLLKYLEEHIQD 363
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Xenopus
Match: pum3 (pumilio RNA binding family member 3 [Source:NCBI gene;Acc:100038289])

HSP 1 Score: 146.362 bits (368), Expect = 6.852e-37
Identity = 94/335 (28.06%), Postives = 174/335 (51.94%), Query Frame = 2 
Query:  257 TARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSDFTSKSNFDMTILNNIHKVILPIIRKQQ-IDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICD 1258
            T RV +  I+ G +E R  +FE +K+ I+ L    Y+  +V+  L +G+K Q   +     G +  L++H+ AS +VE AYN  A  +QR+ + +E YG TF  +             ++     +IL+ + ++++P+ +K+  I  +LV  +  ++ +     IR             +E+IE I E ++ + +T +G +V +      + K RK I +++K  I        ++L +L + D  DDTK+L + +   ++ +L  I N   GRK++ +++N R+       ++++LK+GD N  SKKD  +R  E+LE  + PLL++L  +I D
Sbjct:   54 TTRVIQCYIKHGNEERRQQVFEELKEHIVDLSKSKYARNIVRKFLMYGSKAQVAEIIKSFKGQVKKLLRHSEASYIVEYAYNHKAILEQRNMLCEELYGNTFRFYKSAIHPSLDQVLEAQPEKKDSILDEMKQILVPLGQKEAVIKHSLVHKVYLDFFSNASPKIR-------------SEMIEAIREAVVYIIHTHDGARVGMHSVWHGTPKDRKVIAKTMKTYIEKIATGEFSHLVLLAMFDCVDDTKLLKQLILSELISSLPSIINDKYGRKVLLYLLNWRNPAHFVPEIVEVLKKGDDNAHSKKDPTVRQHELLESISPPLLKYLEEHIQD 375
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Mouse
Match: Pum3 (pumilio RNA-binding family member 3 [Source:MGI Symbol;Acc:MGI:106253])

HSP 1 Score: 160.614 bits (405), Expect = 2.005e-41
Identity = 143/567 (25.22%), Postives = 264/567 (46.56%), Query Frame = 2 
Query:  143 IWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFN--DGKEIKHLSDFTSKSNFDMTILNNIHKVILPIIRKQQ-IDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSESDLKRKLKTETKAVVKKKIKMFTGKFQKADNEMEVDEVPEETGTIIEGHLLESFTGSLIGKSLCNLEKDGKIEGFSDLCIEKFSPENLISFINSNRSAFFLVSLFEIGKETVQNFLKQLFQS--SQEEMSKSDLVGVKILYKHL 1828
            IWE LR+K+   +++ +L   +  + +  I  +     + RV +  I++G +E R   F+ ++ D++ L    YS  +VK  L +G+K Q   +     GH+  +++H+ AS +VE AYN+ A  +QR+ + +E YG TF L+   D   +  + +    +  ++ I++ + +++ P+ +K+  I  +LV  +  ++        R             +E+IE I E ++ L +T +G +VA+      + K RK I++++K  +        ++L +L   D  DDTK++ + +   I+ +L  I N   GRK++ ++++ RD       ++++L++GDGN  SKKD+ IR +E+LE  +  LL +L  +  + +   S  +LV S M    + D          M +I   A   L                           GK    D E+ V E P   G ++   LLE             +++ GK   F+   +E+   +NL S+ + NR A  L SL +   + V N +K   +      E +KS   G++ L + L
Sbjct:  141 IWESLRRKDCDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCFIQYGNEEQRKQAFQELQGDLVELSKAKYSRNIVKKFLMYGSKPQVAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSADHPTLDKVLELQP-AKLEL-IMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKPR-------------SELIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISEIISSLPSIVNDKYGRKVLLYLMSPRDPAHTVPELIELLQKGDGNAHSKKDTAIRRRELLESISPALLSYLQGHTQEVVLDKSACVLV-SDMLGSATGD------VQPAMDAIASLAAAELHPG------------------------GK----DGELHVAEHP--AGHLVLKWLLEQDK---------KMKESGKEGCFAKTLVERVGMKNLKSWASINRGAIILSSLLQSCDQEVVNKVKGGLKPLIPTLEKNKSSSRGIQTLLEKL 646
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Mouse
Match: Pum3 (pumilio RNA-binding family member 3 [Source:MGI Symbol;Acc:MGI:106253])

HSP 1 Score: 103.219 bits (256), Expect = 3.348e-23
Identity = 67/266 (25.19%), Postives = 136/266 (51.13%), Query Frame = 2 
Query:  143 IWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFN--DGKEIKHLSDFTSKSNFDMTILNNIHKVILPIIRKQQ-IDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVI 931
            IWE LR+K+   +++ +L   +  + +  I  +     + RV +  I++G +E R   F+ ++ D++ L    YS  +VK  L +G+K Q   +     GH+  +++H+ AS +VE AYN+ A  +QR+ + +E YG TF L+   D   +  + +    +  ++ I++ + +++ P+ +K+  I  +LV  +  ++        R             +E+IE I E ++ L +T +G +VA+      + K RK I++++K  +
Sbjct:  137 IWESLRRKDCDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCFIQYGNEEQRKQAFQELQGDLVELSKAKYSRNIVKKFLMYGSKPQVAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSADHPTLDKVLELQP-AKLEL-IMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKPR-------------SELIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYV 387
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Mouse
Match: Pum3 (pumilio RNA-binding family member 3 [Source:MGI Symbol;Acc:MGI:106253])

HSP 1 Score: 85.5001 bits (210), Expect = 8.435e-18
Identity = 44/143 (30.77%), Postives = 80/143 (55.94%), Query Frame = 2 
Query:  143 IWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALF 571
            IWE LR+K+   +++ +L   +  + +  I  +     + RV +  I++G +E R   F+ ++ D++ L    YS  +VK  L +G+K Q   +     GH+  +++H+ AS +VE AYN+ A  +QR+ + +E YG TF L+
Sbjct:  141 IWESLRRKDCDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCFIQYGNEEQRKQAFQELQGDLVELSKAKYSRNIVKKFLMYGSKPQVAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLY 283
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Mouse
Match: Pum1 (pumilio RNA-binding family member 1 [Source:MGI Symbol;Acc:MGI:1931749])

HSP 1 Score: 52.7582 bits (125), Expect = 1.587e-6
Identity = 28/116 (24.14%), Postives = 55/116 (47.41%), Query Frame = 2 
Query:  230 IADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFND 577
            I +  Q +  +R  +  +E      R  +F  I +    L    +  +V++   +FG+ +Q+LA+ + + GH++ L    Y  +V++ A  EF  S Q++ M++E  G       D
Sbjct:  853 IMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKAL-EFIPSDQQNEMVRELDGHVLKCVKD 967
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Mouse
Match: Pum1 (pumilio RNA-binding family member 1 [Source:MGI Symbol;Acc:MGI:1931749])

HSP 1 Score: 52.7582 bits (125), Expect = 1.587e-6
Identity = 28/116 (24.14%), Postives = 55/116 (47.41%), Query Frame = 2 
Query:  230 IADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFND 577
            I +  Q +  +R  +  +E      R  +F  I +    L    +  +V++   +FG+ +Q+LA+ + + GH++ L    Y  +V++ A  EF  S Q++ M++E  G       D
Sbjct:  853 IMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKAL-EFIPSDQQNEMVRELDGHVLKCVKD 967
[Close]
BLAST of PUM-HD domain-containing protein vs. UniProt/SwissProt
Match: sp|X1WGX5|PUM3_DANRE (Pumilio homolog 3 OS=Danio rerio OX=7955 GN=pum3 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 8.345e-46
Identity = 143/570 (25.09%), Postives = 265/570 (46.49%), Query Frame = 2 
Query:  143 IWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSDFTSKSNFDMTILNNIHKVILPIIRKQQ-IDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSESDLKRKLKTETKAVVKKKIKMFTGKFQKADNEMEVDEVPEETGTIIEGHLLESFTGSLIGKSLCNLEKDGKI------EGFSDLCIEKFSPENLISFINSNRSAFFLVSLFEIGKETVQNFLKQLFQSSQEEMSK-SDLVGVKILYKHL 1828
            +WE +R+K+    ++ +L  ++  + K  I  +     + RV +  I+FG D+ R  +F+ +K+ I+ L    Y+  +VK  L +G+K+Q   V     G +  +++H+ AS VVE AYN+ A   QR  + +E YG TF +              +      +IL+ + +++ P+ +K+  I  +LV  +  ++         E+A      +    E+IE I E ++ + +T +G +V +      + K RK I++++K  I        A+L +L   D  DDTK++ + +   ++ +L  I ++ +G+K++ ++++ RD   L   ++ +L++GDGN  SKKD +IR KE+LE A+  LL  L  N    +   S  ++V  I+   +             M+++   A+ PLI    D                     G+                       H+ E   G L+ K L  +E+D K+      E FS + +EK   ENL ++ + NR A  L  L +   E+V   +K + +SS  E+ +  +  G+++L + L
Sbjct:  124 VWEMVRRKDCDKQKRTKLMKELQDLVKGKIKTIAFAHDSTRVLQCFIQFGSDKQRKEVFDELKEHIVELSKSKYARNIVKKFLMYGSKEQVGEVMLAFKGKVRQMLRHSEASSVVEYAYNDKAILSQRLMLTEELYGNTFTVLKSSVCPTLEKVLEANPGKLESILDEMKQILTPMAQKEAVIKHSLVHKVFLDFF--------EHAP-----DKQRTEMIESIREAVVYMAHTHDGARVTMHCLWHGTTKDRKVIVKTMKSYIAKFAMGEYAHLVLLAAFDCIDDTKLVKQIIISEMVSSLSEIISNKHGKKVLLYLLSPRDPAHLLPEIIQVLEKGDGNAHSKKDVLIRRKELLEAASPSLLNHLCENAQSMVMDKSCCVVVSDILGSAVGD-------LRPAMEAVAALADGPLIPGGKD---------------------GQL----------------------HMAEHPAGHLVLKWL--IEQDTKMKDTEREERFSRILLEKVGLENLKTWASVNRGAIILCCLLQSADESVAEEVKAMLKSSIPELQRLQNSKGIEVLLEKL 628
[Close]
BLAST of PUM-HD domain-containing protein vs. UniProt/SwissProt
Match: sp|Q562C7|PUM3_RAT (Pumilio homolog 3 OS=Rattus norvegicus OX=10116 GN=Pum3 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.491e-45
Identity = 144/565 (25.49%), Postives = 263/565 (46.55%), Query Frame = 2 
Query:  143 IWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSDFTSKSNFDMTILNNIHKVILPIIRKQQ-IDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSESDLKRKLKTETKAVVKKKIKMFTGKFQKADNEMEVDEVPEETGTIIEGHLLESFTGSLIGKSLCNLEKDGKIEGFSDLCIEKFSPENLISFINSNRSAFFLVSLFEIGKETVQNFLKQLFQS--SQEEMSKSDLVGVKILYKHL 1828
            IWE LR+K+   +++ +L   +  + +  I  +     + RV + +I++G +E R   FE ++ D++ L    YS  +VK  L +G+K Q   +     GH+  +++H+ AS +VE AYN+ A  +QR+ + +E YG TF L+              +      IL+ + +++ P+ +K+  I  +LV  +  ++              A P   L +E+IE I E ++ L +T +G +VA+      + K RK I++++K  +        ++L +L   D  DDTK++ + +   ++ +L  I N   GRK++ ++++ R    L   ++ +L++GDGN  SKKD+ IR +E+LE  +  LL +L  +  + +   S  +LV  I+         +       M +I   A E L                           GK    D E+ + E P        GHL+  +   LI +    ++++GK   F+   +E    +NL S+ + NR A  L SL +   + V N +K   ++     E +KS   G++ L + L
Sbjct:  140 IWESLRRKDCDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCLIQYGSEEQRKWAFEELQGDLVELSKAKYSRNIVKKFLMYGSKPQIAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSADHPTLEKVLEVQPGKLELILDEMKQILTPMAQKEAVIKHSLVHKVFLDFFT-----------YAPP--KLRSELIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKIANGQYSHLVLLAAFDCIDDTKLVKQIIISEVISSLPSIVNDKYGRKVLLYLLSPRAPAHLVPEIIQLLQKGDGNAHSKKDTAIRRRELLESISPALLSYLQGHTREVVLDKSVCVLVSDILGSATGDAQPA-------MDAIAGLAAEELYPG------------------------GK----DGELHIAEHP-------AGHLVLKW---LIEQDK-KIKENGKEGCFAKTLVECVGMKNLKSWASINRGAIVLSSLLQSCDQDVVNKVKAGLKTLIPTLEKTKSTSKGIQTLLEKL 645
[Close]
BLAST of PUM-HD domain-containing protein vs. UniProt/SwissProt
Match: sp|Q15397|PUM3_HUMAN (Pumilio homolog 3 OS=Homo sapiens OX=9606 GN=PUM3 PE=1 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 3.539e-42
Identity = 145/567 (25.57%), Postives = 271/567 (47.80%), Query Frame = 2 
Query:  143 IWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFN--DGKEIKHLSDFTSKSNFDMTILNNIHKVILPIIRKQQ-IDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSESDLKRKLKTETKAVVKKKIKMFTGKFQKADNEMEVDEVPEETGTIIEGHLLESFTGSLIGKSLCNLEKDGKIEGFSDLCIEKFSPENLISFINSNRSAFFLVSLFEIGKETVQNFLKQLFQS--SQEEMSKSDLVGVKILYKHL 1828
            +WE LR+K+   +++ +L   +  + +  I  +     + RV +  I++G +E R   FE ++ D++ L    YS  +VK  L +G+K Q   +     GH+  +++HA AS +VE AYN+ A  +QR+ + +E YG TF L+   D + +  + +   +   ++ I++ + +++ P+ +K+  I  +LV  +  ++              A P   L +E+IE I E ++ L +T +G +VA+      + K RK I++++K  +        ++L +L   D  DDTK++ + +   I+ +L  I N   GRK++ ++++ RD       ++++L++GDGN  SKKD+ +R +E+LE  +  LL +L  +  + +   S  +LV  I+       D   T+  N + S+      P                            GK    D E+ + E P        GHL+  +   LI +    ++++G+   F+   +E    +NL S+ + NR A  L SL +     V N +K   +S     E +KS   G++IL + L
Sbjct:  141 MWEILRRKDCDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCYIQYGNEEQRKQAFEELRDDLVELSKAKYSRNIVKKFLMYGSKPQIAEIIRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSADHRTLDKVLEVQPE-KLEL-IMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFT-----------YAPP--KLRSEMIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISEIISSLPSIVNDKYGRKVLLYLLSPRDPAHTVREIIEVLQKGDGNAHSKKDTEVRRRELLESISPALLSYLQEHAQEVVLDKSACVLVSDILGSATG--DVQPTM--NAIASLAATGLHP---------------------------GGK----DGELHIAEHP-------AGHLVLKW---LIEQDK-KMKENGREGCFAKTLVEHVGMKNLKSWASVNRGAIILSSLLQSCDLEVANKVKAALKSLIPTLEKTKSTSKGIEILLEKL 646
[Close]
BLAST of PUM-HD domain-containing protein vs. UniProt/SwissProt
Match: sp|Q8BKS9|PUM3_MOUSE (Pumilio homolog 3 OS=Mus musculus OX=10090 GN=Pum3 PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 1.430e-40
Identity = 143/567 (25.22%), Postives = 264/567 (46.56%), Query Frame = 2 
Query:  143 IWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFN--DGKEIKHLSDFTSKSNFDMTILNNIHKVILPIIRKQQ-IDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSESDLKRKLKTETKAVVKKKIKMFTGKFQKADNEMEVDEVPEETGTIIEGHLLESFTGSLIGKSLCNLEKDGKIEGFSDLCIEKFSPENLISFINSNRSAFFLVSLFEIGKETVQNFLKQLFQS--SQEEMSKSDLVGVKILYKHL 1828
            IWE LR+K+   +++ +L   +  + +  I  +     + RV +  I++G +E R   F+ ++ D++ L    YS  +VK  L +G+K Q   +     GH+  +++H+ AS +VE AYN+ A  +QR+ + +E YG TF L+   D   +  + +    +  ++ I++ + +++ P+ +K+  I  +LV  +  ++        R             +E+IE I E ++ L +T +G +VA+      + K RK I++++K  +        ++L +L   D  DDTK++ + +   I+ +L  I N   GRK++ ++++ RD       ++++L++GDGN  SKKD+ IR +E+LE  +  LL +L  +  + +   S  +LV S M    + D          M +I   A   L                           GK    D E+ V E P   G ++   LLE             +++ GK   F+   +E+   +NL S+ + NR A  L SL +   + V N +K   +      E +KS   G++ L + L
Sbjct:  140 IWESLRRKDCDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCFIQYGNEEQRKQAFQELQGDLVELSKAKYSRNIVKKFLMYGSKPQVAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSADHPTLDKVLELQP-AKLEL-IMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKPR-------------SELIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISEIISSLPSIVNDKYGRKVLLYLMSPRDPAHTVPELIELLQKGDGNAHSKKDTAIRRRELLESISPALLSYLQGHTQEVVLDKSACVLV-SDMLGSATGD------VQPAMDAIASLAAAELHPG------------------------GK----DGELHVAEHP--AGHLVLKWLLEQDK---------KMKESGKEGCFAKTLVERVGMKNLKSWASINRGAIILSSLLQSCDQEVVNKVKGGLKPLIPTLEKNKSSSRGIQTLLEKL 645
[Close]
BLAST of PUM-HD domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9UU76|PUF6_SCHPO (Pumilio homology domain family member 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=puf6 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.069e-36
Identity = 108/398 (27.14%), Postives = 201/398 (50.50%), Query Frame = 2 
Query:   68 STKKRKRMEKQNRRKHPIISKEIIL--IWEELRQK-NVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLS----DFTSKSNFDMTILNNIHKVILPIIRKQQIDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFI-VNHRDKKFLSSYVLDILKQGDG--NRVSKKDSVIRAKEILEFATKPLL 1231
            S  +RK+++K+ +   P     +    +W++LRQK ++K + +  +  ++  + ++ +  LV +   +RV ++ ++FG  + R TI   +    + LC   Y  ++   + K+GT   +  +   + G++V +I+H  A+ VVE A+ EF N +Q+  +I EFYG  F +F D  +  H+     D   K     +I+ N+ K I   I K  I  T+V   + E++N        ++  AK       E++ L  E + +  +TR+G++VA+ LF   + K RK +++SL+  ++ T + +  +L V+  LD TDDT M  K +       L  +S     R+I+ ++ V   D ++ S    ++L+  D    + SKKD ++R  E L+    PLL
Sbjct:  109 SHAQRKKLQKERKAMKPFADTSLKAKSLWDKLRQKTSIKAEERKTIIAELFDLIRTNVKQLVFKHDMSRVVQTCVKFGSKQQRETICAELAGSYVDLCKSPYGKYLAIKIFKYGTPKMKEVILGEMYGNVVKMIRHREAAYVVEDAFREFTNLQQQRALICEFYGPEFQVFKDRTQDIHIDKLLIDHPEKRP---SIMQNLWKTIEGSIAKGSIGFTMVHRAMLEFIN------HADSNEAK-------ELLNLTKELIYEFVHTRDGSQVAMKLFALANAKDRKVMLKSLRPYLIETAKDSYGHLVVVAALDCTDDTIMTGKLLQAEFEGELLKLSADKFARRILLYVLVGWEDARYFSKENRELLRSLDSLKAKTSKKDPIVRRNE-LKATIGPLL 489
[Close]
BLAST of PUM-HD domain-containing protein vs. TrEMBL
Match: A0A369RZW9 (Pumilio-like protein 3 OS=Trichoplax sp. H2 OX=287889 GN=TrispH2_007689 PE=4 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 3.517e-73
Identity = 176/593 (29.68%), Postives = 299/593 (50.42%), Query Frame = 2 
Query:   59 NEISTKKRKRMEKQNRRKHPIISKEIILIWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFND--GKEIKHLSDFTSKSNFDMTILNNIHKVILPIIRKQQIDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDC-LHFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSESDLKRKLKTETKAVVKKKIKMFTGKFQKADNEMEVDEVPEETGTIIEGHLLESFTGSLIGKSLCNLEKDGKIEGFSDLCIEKFSPENLISFINSNRSAFFLVSLFEIGKETVQNFLKQLFQSSQEEMSKSDLVGVKILYKHL 1828
            N +  K+R++M K+ +    +I+K   L WE +R  N+  +++ EL  +++ +  S++ DLV +  T R+ +  ++FG +E R  I + ++  ++ L    YS F+VK MLK+GTK QR  +     G +  LI+H  A++V+E AYN++AN+ QR+ +I+EFYG  FA+F    G+ +  +    ++ N    IL  +H  + P++ +  I  TLV   L EY              A P      E+IE I E L+ + +T EG+KV +      + K RK II+S+K+ +   C     +  +L + D  DDT ++ K +   ++ NL+ IS +  GRK++ ++++ RD ++    V+  LK+GDGN  SKKDS +R++E+ +  ++PL+Q++  N+ D  L  S+ IL++ ++         E+    N LMK+I   ANE L                                 DNE E              H++ + +G  + K L       K   FS++ +E  SP  L S+I +NR +F LVSL E    +    L+Q+ +  ++E+ +    G  IL K L
Sbjct:   66 NSLPFKERRKMRKEMKDNSKVITKAKSL-WESIRMHNISNEKRSELIKQLLLLISSIMQDLVMRHDTVRIVQCCLKFGNEEQRREICQQLQGSVITLSQARYSKFLVKKMLKYGTKKQRDEIIKSFYGQVRKLIRHKEAAEVLETAYNDYANASQRATLIEEFYGPEFAIFKSSAGRTLNEV--IAAEPNNKTKILKYMHDTLTPLLDRDVIKHTLVHRALLEYFY-----------HADPKMKF--EMIEAIREALVYILHTEEGSKVTMRCIWFGTPKDRKVIIKSMKKYVTKICLEEHGHYAMLAIFDTVDDTVLVRKALLSEVISNLNEISKNAYGRKVLLYLLSARDSRYFHPDVVKNLKEGDGNLHSKKDSSVRSQELQQAISEPLVQFITKNVKDLILDNSTAILVIAAV---------ENVNDVNELMKAIASLANEVL-------------------------------DPDNEQE--------------HIIANQSGHFVFKKLIKTNMKEKGTSFSEILLEVVSPPVLRSWIYTNRGSFTLVSLMESSPVSATK-LQQILRDVKQEIKQQSTAGCSILSKLL 587
[Close]
BLAST of PUM-HD domain-containing protein vs. TrEMBL
Match: A0A2T7NPQ9 (PUM-HD domain-containing protein OS=Pomacea canaliculata OX=400727 GN=C0Q70_16420 PE=4 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 2.689e-68
Identity = 169/564 (29.96%), Postives = 284/564 (50.35%), Query Frame = 2 
Query:  143 IWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSDF--TSKSNFDMTILNNIHKVILPIIRKQQIDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSESDLKRKLKTETKAVVKKKIKMFTGKFQKADNEMEVDEVPEETGTIIEGHLLESFTGSLIGKSLCNLEKDGKIEGFSDLCIEKFSPENLISFINSNRSAFFLVSLFEIGKETVQNFLKQLFQSSQEEMSKSDLVGVKILYKHL 1828
            IWEELR+ N+  +R+ ELC  +    +  + +L     +AR+ + ++++GV E+R  + E +K  I+ LC   Y+ F+++ +LK+GTK QR  +     GH+  L++H  AS +VE AYN+FAN+ QR  +++EFYG TF LF     I  L DF        DM I++N+   +LP+I K  +  +LV  I +++         ++A++A+       ++IE + E ++ + +TR+G + A+      S K RK +I+SLK  +   C+    ++ +L + D  DDT ++ K +   +L+NL  +    +GRK++ +++ HR        V+ IL+QGDGN  SKKD+ +RA+E+ +  ++PLL +L  N+   +  SS  LLV +I+T   S D        N M +I       ++   +D  +      ++V+                      V E+T     GHL+      LI      L++ GK   FS + +         S+  SNR  F LVSLFE     V   L+    S ++ + K    G +IL + L
Sbjct:  260 IWEELRKLNLPQERREELCKSLFDKVQGKVKELAVVHDSARIIQCLVKYGVPENRAVVLEELKDHIVELCKSKYAKFIIRKLLKYGTKQQRTQIIKAFHGHVRKLVRHKEASDIVEFAYNDFANAHQRLGLLEEFYGPTFVLFKT-PSIASLDDFLKEQPDKKDM-IMSNLKGTLLPLIDKYILTYSLVHKIFYDFF--------KHADVAQQ-----KDVIEALRESIVHMLHTRDGVRTAMCCIWHGSAKDRKLMIKSLKGHVAKICREETGHMLLLAIFDAVDDTVLVQKVILDELLKNLAEVVQDTHGRKVLLYLLMHRHPVHFCPDVISILQQGDGNSTSKKDAALRARELRDHISRPLLAYLEGNVQKLITNSSTSLLVLAIITHA-SGD------VTNAMDAIA-----KVVVESADPTKTANPSGESVI---------------------NVSEDTA----GHLV---LKKLILNDKERLQQ-GKSGLFSVILLNAARDATFKSWAASNRGCFILVSLFETEIPEVTEMLQTWLDSLKKHLKKMTFKGAEILLQKL 767
[Close]
BLAST of PUM-HD domain-containing protein vs. TrEMBL
Match: A0A1S3K9S0 (pumilio homolog 3-like OS=Lingula unguis OX=7574 GN=LOC106180052 PE=4 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 7.201e-66
Identity = 165/596 (27.68%), Postives = 301/596 (50.50%), Query Frame = 2 
Query:   62 EISTKKRKRMEKQNRRKHPIISKEIILIWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSDF--TSKSNFDMTILNNIHKVILPIIRKQQIDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSESDLKRKLKTETKAVVKKKIKMFTGKFQKADNEMEVDEVPEETGTIIEGHLLESFTGSLIGKSLC-----NLEKDGKIEGFSDLCIEKFSPENLISFINSNRSAFFLVSLFEIGKETVQNFLKQLFQSSQEEMSKSDLVGVKILYKHL 1828
            E+S K RK++ K  R    +I ++   IWE LR+ ++K + K +LC +++++ +  + +LV    TARV + +++ G  E R  +FE +K D++ LC   YS F VK +LK+GTK Q+ AVF    G++  +++H  A+ V+E  YNE+A + QRS +++EFYG +FALF     +  L        +  DM IL+N+ + I P++ K  +  T+V    FEY        R              ++IEL+ E ++ + +TR+G++VA+      + K RK II+S K  +V  C+    ++ +L + D  DDTK++ K V + +L++L  +     G K++ ++++ RD+ +    V+ +L+ GD N  SKKD+ +R KE+L   + PLLQ++  +  + +  +S++LL+  I+T        ++      M++I   A EP +                                            +G++   H++E   G +  K L       ++++ K+  F+D+ +   S  +L S+   NR  F L+++ E+  E +   +K+   S ++ + K +  G +IL   L
Sbjct:  299 EMSKKDRKKVRKMQRTNFEVI-QQTKKIWESLRRHDLKAEEKTKLCQELMTMVRGKVKELVFAHDTARVIQCLMKNGSQEQRTELFEELKDDLVELCKTKYSSFFVKKVLKYGTKAQKNAVFKAFHGNVRKIVRHTVAAAVLEYGYNEYATAAQRSALMEEFYGPSFALFK-SPNVTTLEQILKEQPTRRDM-ILSNMKEAITPLVDKTVLSHTIVHRAFFEYFTYASNKAR-------------MDMIELLRENIVHMVHTRDGSRVAMYCIWYGTAKDRKVIIKSFKGHVVKLCKEEYGHMVMLALFDAVDDTKLMEKAVLQEMLKSLYEVCFDQYGLKVLLYLLSPRDQVYFHPDVIKVLELGDANPNSKKDAAVRRKELLSAVSSPLLQFIVDHTKELVMSNSRLLLILDILT-------HAEGDPTAAMEAICKIAAEPFV--------------------------------------------SGSLENFHIIEHPAGHMTLKKLIKNDAERIKQNEKVL-FTDILLRTVSESSLKSWAACNRGCFILITILELNNEKMSAEVKKRLTSVKKSLGKMEFKGAQILQGKL 826
[Close]
BLAST of PUM-HD domain-containing protein vs. TrEMBL
Match: A0A1S3JCA0 (pumilio homolog 3 isoform X2 OS=Lingula unguis OX=7574 GN=LOC106171965 PE=4 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.074e-65
Identity = 165/596 (27.68%), Postives = 301/596 (50.50%), Query Frame = 2 
Query:   62 EISTKKRKRMEKQNRRKHPIISKEIILIWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSDF--TSKSNFDMTILNNIHKVILPIIRKQQIDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSESDLKRKLKTETKAVVKKKIKMFTGKFQKADNEMEVDEVPEETGTIIEGHLLESFTGSLIGKSLC-----NLEKDGKIEGFSDLCIEKFSPENLISFINSNRSAFFLVSLFEIGKETVQNFLKQLFQSSQEEMSKSDLVGVKILYKHL 1828
            E+S K RK++ K  R    +I ++   IWE LR+ ++K + K +LC +++++ +  + +LV    TARV + +++ G  E R  +FE +K D++ LC   YS F VK +LK+GTK Q+ AVF    G++  +++H  A+ V+E  YNE+A + QRS +++EFYG +FALF     +  L        +  DM IL+N+ + I P++ K  +  T+V    FEY        R              ++IEL+ E ++ + +TR+G++VA+      + K RK II+S K  +V  C+    ++ +L + D  DDTK++ K V + +L++L  +     G K++ ++++ RD+ +    V+ +L+ GD N  SKKD+ +R KE+L   + PLLQ++  +  + +  +S++LL+  I+T        ++      M++I   A EP +                                            +G++   H++E   G +  K L       ++++ K+  F+D+ +   S  +L S+   NR  F L+++ E+  E +   +K+   S ++ + K +  G +IL   L
Sbjct:  313 EMSKKDRKKVRKMQRTNFEVI-QQTKKIWESLRRHDLKAEEKTKLCQELMNMVRGKVKELVFAHDTARVIQCLMKNGSQEQRTELFEELKDDLVELCKTKYSSFFVKKVLKYGTKAQKNAVFKAFHGNVRKIVRHTVAAAVLEYGYNEYATAAQRSALMEEFYGPSFALFK-SPNVTTLEQILKEQPTRRDM-ILSNMKEAITPLVDKTVLSHTIVHRAFFEYFTYASNKAR-------------MDMIELLRENIVHMVHTRDGSRVAMYCIWYGTAKDRKVIIKSFKGHVVKLCKEEYGHMVMLALFDAVDDTKLMEKAVLQEMLKSLYEVCFDQYGLKVLLYLLSPRDQVYFHPDVIKVLELGDANPNSKKDAAVRRKELLSAVSSPLLQFIVDHTKELVMSNSRLLLILDILT-------HAEGDPTAAMEAICKIAAEPFV--------------------------------------------SGSLENFHIIEHPAGHMTLKKLIKNDAERMKQNEKVL-FTDILLRTVSESSLKSWAACNRGCFILITILELNNEKMSAEVKKRLTSVKKSLGKMEFKGAQILQSKL 840
[Close]
BLAST of PUM-HD domain-containing protein vs. TrEMBL
Match: A0A1S3JC21 (pumilio homolog 3 isoform X1 OS=Lingula unguis OX=7574 GN=LOC106171965 PE=4 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.077e-65
Identity = 165/596 (27.68%), Postives = 301/596 (50.50%), Query Frame = 2 
Query:   62 EISTKKRKRMEKQNRRKHPIISKEIILIWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSDF--TSKSNFDMTILNNIHKVILPIIRKQQIDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSESDLKRKLKTETKAVVKKKIKMFTGKFQKADNEMEVDEVPEETGTIIEGHLLESFTGSLIGKSLC-----NLEKDGKIEGFSDLCIEKFSPENLISFINSNRSAFFLVSLFEIGKETVQNFLKQLFQSSQEEMSKSDLVGVKILYKHL 1828
            E+S K RK++ K  R    +I ++   IWE LR+ ++K + K +LC +++++ +  + +LV    TARV + +++ G  E R  +FE +K D++ LC   YS F VK +LK+GTK Q+ AVF    G++  +++H  A+ V+E  YNE+A + QRS +++EFYG +FALF     +  L        +  DM IL+N+ + I P++ K  +  T+V    FEY        R              ++IEL+ E ++ + +TR+G++VA+      + K RK II+S K  +V  C+    ++ +L + D  DDTK++ K V + +L++L  +     G K++ ++++ RD+ +    V+ +L+ GD N  SKKD+ +R KE+L   + PLLQ++  +  + +  +S++LL+  I+T        ++      M++I   A EP +                                            +G++   H++E   G +  K L       ++++ K+  F+D+ +   S  +L S+   NR  F L+++ E+  E +   +K+   S ++ + K +  G +IL   L
Sbjct:  314 EMSKKDRKKVRKMQRTNFEVI-QQTKKIWESLRRHDLKAEEKTKLCQELMNMVRGKVKELVFAHDTARVIQCLMKNGSQEQRTELFEELKDDLVELCKTKYSSFFVKKVLKYGTKAQKNAVFKAFHGNVRKIVRHTVAAAVLEYGYNEYATAAQRSALMEEFYGPSFALFK-SPNVTTLEQILKEQPTRRDM-ILSNMKEAITPLVDKTVLSHTIVHRAFFEYFTYASNKAR-------------MDMIELLRENIVHMVHTRDGSRVAMYCIWYGTAKDRKVIIKSFKGHVVKLCKEEYGHMVMLALFDAVDDTKLMEKAVLQEMLKSLYEVCFDQYGLKVLLYLLSPRDQVYFHPDVIKVLELGDANPNSKKDAAVRRKELLSAVSSPLLQFIVDHTKELVMSNSRLLLILDILT-------HAEGDPTAAMEAICKIAAEPFV--------------------------------------------SGSLENFHIIEHPAGHMTLKKLIKNDAERMKQNEKVL-FTDILLRTVSESSLKSWAACNRGCFILITILELNNEKMSAEVKKRLTSVKKSLGKMEFKGAQILQSKL 841
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Cavefish
Match: pum3 (pumilio RNA binding family member 3 [Source:NCBI gene;Acc:103043134])

HSP 1 Score: 149.443 bits (376), Expect = 9.445e-38
Identity = 149/580 (25.69%), Postives = 276/580 (47.59%), Query Frame = 2 
Query:   59 NEISTKKR--KRMEKQNRRKHP----IISKEIILIWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSDFTSKSNFDM--TILNNIHKVILPIIRKQQ-IDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENL-DVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSESDLKRKLKTETKAVVKKKIKMFTGKFQKADNEMEVDEVPEETGTIIEGHLLESFTGSLIGKSLCNLEKDGKIEGFSDLCIEKFSPENLISFINSNRSAFFLVSLFEIGKETVQNFLKQLFQS 1768
            NE   KK+  K+  +QN RK      I +K++   WE +R+K+   D+K +L  ++  + +  +  +     + RV +  I+FG D+ R  IF+ +K  ++ L    Y+  +VK  L +G+K Q   V     G +  +++H+ AS VVE AYN+ A   QR  + +E YG TF +      +    +   +SN +   +I + + +++ P+ +K+  I  +LV  +  ++             L  P + L +E+IE I E ++ + +T +G +V +      + K RK II+++K  I        A+L +L   D  DDTK++ + V   ++ +L +VISN  +G+K++ ++++ RD   L   ++ +L++GDGN  SKKD  +R +E+LE  + PLL +L  N                  T+ +  D     + ++++ + V            DL   +     AV +   + F       D ++ + E P        GHL+  +   LI +    ++  G+ E FS + +EK   + L ++++ NR A  L  L +   E V   ++   +S
Sbjct:   94 NEFKQKKKELKQNRQQNDRKDSFQTVIRAKQV---WEMIRRKDCDKDKKEKLLKELRELVRGKVKTIAFAHDSTRVLQCFIQFGNDKQRQEIFDELKDHMVELSKSKYARNIVKKFLMYGSKQQVGEVMLAFKGKVRQMLRHSEASSVVEYAYNDKAILSQRLMLTEELYGNTFQVCKS--TVCPTLEKVLESNPEKLESIADEMKQILTPMAQKEAVIKHSLVHKVFLDFF------------LHAP-DKLKSEMIESIRESVVYMAHTHDGARVTMHCLWHGTSKDRKVIIKTMKTYIAKFAMGEYAHLVLLAAFDCIDDTKLVKQAVLSELVSSLAEVISNK-HGKKVLLYLLSPRDPAHLLPEIIQVLEKGDGNAHSKKDVSVRRQELLEAISPPLLTYLCEN------------------TRSMVMDKACSVVVSDILGAAV-----------GDLWPAM----GAVAELAAEDFVA--GGVDGQLHMAEHP-------AGHLVLKW---LIEQD-AKMKAAGREERFSRVLLEKVGLDKLKTWVSVNRGAMVLCCLLQSADEGVAEDVRTALRS 608
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Cavefish
Match: pum3 (pumilio RNA binding family member 3 [Source:NCBI gene;Acc:103043134])

HSP 1 Score: 149.443 bits (376), Expect = 9.445e-38
Identity = 149/580 (25.69%), Postives = 276/580 (47.59%), Query Frame = 2 
Query:   59 NEISTKKR--KRMEKQNRRKHP----IISKEIILIWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSDFTSKSNFDM--TILNNIHKVILPIIRKQQ-IDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENL-DVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSESDLKRKLKTETKAVVKKKIKMFTGKFQKADNEMEVDEVPEETGTIIEGHLLESFTGSLIGKSLCNLEKDGKIEGFSDLCIEKFSPENLISFINSNRSAFFLVSLFEIGKETVQNFLKQLFQS 1768
            NE   KK+  K+  +QN RK      I +K++   WE +R+K+   D+K +L  ++  + +  +  +     + RV +  I+FG D+ R  IF+ +K  ++ L    Y+  +VK  L +G+K Q   V     G +  +++H+ AS VVE AYN+ A   QR  + +E YG TF +      +    +   +SN +   +I + + +++ P+ +K+  I  +LV  +  ++             L  P + L +E+IE I E ++ + +T +G +V +      + K RK II+++K  I        A+L +L   D  DDTK++ + V   ++ +L +VISN  +G+K++ ++++ RD   L   ++ +L++GDGN  SKKD  +R +E+LE  + PLL +L  N                  T+ +  D     + ++++ + V            DL   +     AV +   + F       D ++ + E P        GHL+  +   LI +    ++  G+ E FS + +EK   + L ++++ NR A  L  L +   E V   ++   +S
Sbjct:   94 NEFKQKKKELKQNRQQNDRKDSFQTVIRAKQV---WEMIRRKDCDKDKKEKLLKELRELVRGKVKTIAFAHDSTRVLQCFIQFGNDKQRQEIFDELKDHMVELSKSKYARNIVKKFLMYGSKQQVGEVMLAFKGKVRQMLRHSEASSVVEYAYNDKAILSQRLMLTEELYGNTFQVCKS--TVCPTLEKVLESNPEKLESIADEMKQILTPMAQKEAVIKHSLVHKVFLDFF------------LHAP-DKLKSEMIESIRESVVYMAHTHDGARVTMHCLWHGTSKDRKVIIKTMKTYIAKFAMGEYAHLVLLAAFDCIDDTKLVKQAVLSELVSSLAEVISNK-HGKKVLLYLLSPRDPAHLLPEIIQVLEKGDGNAHSKKDVSVRRQELLEAISPPLLTYLCEN------------------TRSMVMDKACSVVVSDILGAAV-----------GDLWPAM----GAVAELAAEDFVA--GGVDGQLHMAEHP-------AGHLVLKW---LIEQD-AKMKAAGREERFSRVLLEKVGLDKLKTWVSVNRGAMVLCCLLQSADEGVAEDVRTALRS 608
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Yeast
Match: PUF6 (Pumilio-homology domain protein; binds the 3' UTR of ASH1 mRNA and represses its translation, resulting in proper asymmetric localization of ASH1 mRNA; required at post-transcriptional step for efficient retrotransposition; absence results in decreased Ty1 Gag:GFP protein levels; co-sediments with the 60S ribosomal subunit and is required for its biogenesis [Source:SGD;Acc:S000002904])

HSP 1 Score: 126.716 bits (317), Expect = 4.969e-31
Identity = 139/583 (23.84%), Postives = 266/583 (45.63%), Query Frame = 2 
Query:   56 ENEISTKKRKRM-EKQNRRKHPIISKEIILIWEELRQKNVKTDRKF--ELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSDFTSKSNFDMTIL-NNIHKVILPIIRKQQIDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVL-DILKQGDGNRV-SKKDSVIRAKEILEFATKPLLQWLNTNICDCL------HFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSESDLKRKLKTE-TKAVVKKKIKMFTGKFQKADNEMEVDEVPEETGTIIEGHLLESFTGSLIGKSLCNLEKDGKIEGFSDLCIEKFSPENLISFINSNRSAFFLVSLFEIGKETVQN--FLKQL 1759
            EN   T++RK + E++ +RK     ++I  +WE LR K     ++   +L ++I  +SK  I+DLV +   +R+ ++++++   + R  I + +K    +L T AY  +++  +L +G++  R  + + L G +  L++H   + VVE  +  +A  +QR  MI+EF+G  +A+F +  +   +      S     I+  N+   I   + K      ++   + EYV +               E  ++E+IEL++EQ  +L +T EG+ VA TL    + K RK I+++LK       ++    +  +T+L+  DDT ++ K  +  + E+L        GR+   +I+   D K+ S  V  ++L+  + ++  SKKD + R  E+L       L  ++ +    L       F +++L+   +  +    D E    Y  ++ +I+      + + E  + R   T   KA+++       GK+    N  E   +P                       L N++  G +     L  E     NL+ +IN+  S+F +V+L+E  K+  +   FLK L
Sbjct:  100 ENGNHTEQRKLLKERKMQRKSGTQVQQIKSVWERLRVKTPPLPKQIREKLSNEIWELSKDCISDLVLKHDASRIVQTLVKYSSKDRREQIVDALKGKFYVLATSAYGKYLLVKLLHYGSRSSRQTIINELHGSLRKLMRHREGAYVVEDLFVLYATHEQRQQMIKEFWGSEYAVFRETHKDLTIEKVCESSIEKRNIIARNLIGTITASVEKGSTGFQILHAAMREYVKI-------------ANEKEISEMIELLHEQFAELVHTPEGSDVACTLVARANAKERKLILKALKNHAEKLIKNEYGNIVFITILNCVDDTVLVFKTFSPTVKEHLQEFIIDKFGRRPWLYILLGLDGKYFSPIVKNELLRYIELSKATSKKDPLQRRHELLSKFAPMFLSTISKDYSSILTENLGCQFIAEVLINDELYAQLNEKDQEK---YQQVLNNILTTFKGDITEEEHPIHRAFSTRLLKALIQ------GGKW----NNKEKKVIP-----------------------LKNVQGLG-VPFAEKLYDEIIDSSNLLEWINNADSSFTIVALYETLKDQKEGKPFLKDL 632
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Nematostella
Match: EDO42548 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S171])

HSP 1 Score: 181.8 bits (460), Expect = 1.753e-49
Identity = 116/374 (31.02%), Postives = 202/374 (54.01%), Query Frame = 2 
Query:  146 WEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFN--DGKEI-KHLSDFTSKSNFDMTILNNIHKVILPIIRKQQIDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICD 1258
            +E LR+ +V   +K +L   I+ +      +++ +  T RV +S I+FG    +  +FE  K D+  +    YS F VK MLK+GTK+QR  +     G +  LI+H  AS+++EA Y ++A + Q++ +IQEFYG  FA+F   D + + K L++   K +    IL N+ + + P+  K  I   +V  +L EY+        +NA+         +E+IE I E ++ + +T +G++VA+      S K RK I+++ K  I   C+    +L +L++ D  DDT ++ K +   I+ NL  I+    GRK++ +++  R        ++++LK+GD N+ SKKD  +R KE+L+  +  L+Q     +CD
Sbjct:  128 YETLRRNDVAKSQKVKLISDILKLIAGHTHEVIFKHDTGRVMQSCIKFGTPAQKQALFEQFKDDLSDMLKSKYSKFFVKKMLKYGTKEQRNTIIKCFHGKVRKLIRHKEASEIMEAIYTDYAVAAQKASLIQEFYGPEFAVFKTLDNRNLAKILAEQPEKKD---EILRNLKEALGPLTDKSVITHNIVHRVLSEYMTF----ADDNAK---------SEMIEAIKECVVLILHTHDGSRVAMHCLWNGSTKDRKTILKTFKTYIPKICKEEYGHLVMLSLFDVVDDTVLVKKIIFPEIIANLKDIAQDTYGRKVLLYLLMPRASTHFHPDIVELLKKGDNNQYSKKDPELRRKELLDAISPSLVQL----VCD 481
[Close]
BLAST of PUM-HD domain-containing protein vs. Ensembl Medaka
Match: pum3 (pumilio RNA binding family member 3 [Source:NCBI gene;Acc:101157794])

HSP 1 Score: 196.052 bits (497), Expect = 4.106e-54
Identity = 153/568 (26.94%), Postives = 273/568 (48.06%), Query Frame = 2 
Query:  143 IWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLS-DFTSKSNFD--MTILNNIHKVILPIIRKQQ-IDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENL-DVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSESDLKRKLKTETKAVVKKKIKMFTGKFQKADNEMEVDEVPEETGTIIEGHLLESFTGSLIGKSLCNLEKDGKIEGFSDLCIEKFSPENLISFINSNRSAFFLVSLFEIGKETVQNFLKQLFQSSQEEM-SKSDLVGVKILYKHL 1828
            +WE+LR+K    + K +L  K+  + +     +     + R+ +  ++FG  + R  +FE +K D++ LC  +Y   VVK +L +G K+   AV     GH+  +++H+ AS V+E AYN+ A   QR  +  E YG T+A+    K  +H + +   K+N D   +I++++ +++LP+  K+Q I  +LV     ++   L  P ++ +E+           IE I E ++ + +T +G +VA+      + K RK II+++K  +V        +L +L + D  DDTK++ + V   +L +L +VISN  +G+K++ ++++HR+   L   ++ +L+QGDGN  SKKD   R KE+LE  + P+L +L  N  D +   +  +++  I+                 M ++   AN+ L+                                D E+ + E P        GHL+  +   LI K    L + G+ E F  + ++    E L S+   NR A  L SL    + +V   +K   QS   ++ S     GV+IL ++L
Sbjct:  138 VWEDLRRKKCDEEVKKKLMKKLHDLIRGNTKQMAFAHDSVRILQCFLQFGSHKQRQEVFEDLKDDVISLCKSSYGRHVVKKLLMYGNKELVAAVMQTFKGHVRQMLRHSAASTVIEYAYNDKAMLAQRLMLADELYGNTYAIC---KSSEHNTIEKVVKANADKVASIMDDMKQILLPMASKEQVIKHSLVHKAFLDFF--LFAPDKQRSEM-----------IESIRESVVYMAHTHDGARVAMHCLWHGTAKDRKVIIKTMKTYMVKFATGEFGHLVLLALFDCVDDTKLIRQAVLSEVLSSLKEVISNK-HGKKVLLYLLSHRNPAHLLPEIIKVLEQGDGNAHSKKDPEKRRKELLEALSPPILDYLCENAADMVKDKATGVIISDILGSACGD-------LRPAMTAVAQLANQELVPG----------------------------GVDGELHMAEHP-------AGHLVLKW---LIQKD-GELAQAGREERFGRILVDTVGAERLKSWAKVNRGAIVLCSLLNSCEPSVAAEVKTALQSITSQLHSTCSNQGVQILLQNL 642
[Close]
BLAST of PUM-HD domain-containing protein vs. Planmine SMEST
Match: SMESG000023171.1 (SMESG000023171.1)

HSP 1 Score: 1200.65 bits (3105), Expect = 0.000e+0
Identity = 591/595 (99.33%), Postives = 593/595 (99.66%), Query Frame = 2 
Query:   53 MENEISTKKRKRMEKQNRRKHPIISKEIILIWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSDFTSKSNFDMTILNNIHKVILPIIRKQQIDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSESDLKRKLKTETKAVVKKKIKMFTGKFQKADNEMEVDEVPEETGTIIEGHLLESFTGSLIGKSLCNLEKDGKIEGFSDLCIEKFSPENLISFINSNRSAFFLVSLFEIGKETVQNFLKQLFQSSQEEMSKSDLVGVKILYKHLFLE 1837
            MENEISTKKRKRMEKQNRRKHPIISKEIILIWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFE+IKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSDFTSKSNFDMTILNNIHKVILPIIRKQQIDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDK FLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSES+LKRKLKTETKAVVKKKIKMFTGKFQKADNEMEVDEVPEETGTIIEGHLLESFTGSLIGKSLCNLEKDGKIEGFSDLCIEKFSPENLISFINSNRSAFFLVSLFEIGKETVQNFLKQLFQSSQEEMSKSDL GVKILYKHLFLE
Sbjct:    1 MENEISTKKRKRMEKQNRRKHPIISKEIILIWEELRQKNVKTDRKFELCDKIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEIIKKDILLLCTGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYNEFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSDFTSKSNFDMTILNNIHKVILPIIRKQQIDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEIIELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHTDAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNHRDKNFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNICDCLHFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSESELKRKLKTETKAVVKKKIKMFTGKFQKADNEMEVDEVPEETGTIIEGHLLESFTGSLIGKSLCNLEKDGKIEGFSDLCIEKFSPENLISFINSNRSAFFLVSLFEIGKETVQNFLKQLFQSSQEEMSKSDLAGVKILYKHLFLE 595
The following BLAST results are available for this feature:
BLAST of PUM-HD domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
PUM37.370e-4325.57pumilio RNA binding family member 3 [Source:HGNC S... [more]
PUM13.573e-624.14pumilio RNA binding family member 1 [Source:HGNC S... [more]
PUM26.764e-626.85pumilio RNA binding family member 2 [Source:HGNC S... [more]
PUM27.013e-626.85pumilio RNA binding family member 2 [Source:HGNC S... [more]
PUM27.297e-626.85pumilio RNA binding family member 2 [Source:HGNC S... [more]
back to top
BLAST of PUM-HD domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
puf-124.075e-3626.84Pumilio domain-containing protein 12 [Source:UniP... [more]
back to top
BLAST of PUM-HD domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
peng9.231e-3628.07gene:FBgn0015527 transcript:FBtr0077223[more]
back to top
BLAST of PUM-HD domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
pum31.105e-4625.09Danio rerio pumilio RNA-binding family member 3 (p... [more]
pum31.105e-4625.09Danio rerio pumilio RNA-binding family member 3 (p... [more]
pum31.335e-4126.24Danio rerio pumilio RNA-binding family member 3 (p... [more]
back to top
BLAST of PUM-HD domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
pum31.292e-4225.00pumilio RNA binding family member 3 [Source:NCBI g... [more]
pum34.151e-3827.61pumilio RNA binding family member 3 [Source:NCBI g... [more]
pum38.482e-3827.61pumilio RNA binding family member 3 [Source:NCBI g... [more]
pum33.893e-3728.06pumilio RNA binding family member 3 [Source:NCBI g... [more]
pum36.852e-3728.06pumilio RNA binding family member 3 [Source:NCBI g... [more]
back to top
BLAST of PUM-HD domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Pum32.005e-4125.22pumilio RNA-binding family member 3 [Source:MGI Sy... [more]
Pum33.348e-2325.19pumilio RNA-binding family member 3 [Source:MGI Sy... [more]
Pum38.435e-1830.77pumilio RNA-binding family member 3 [Source:MGI Sy... [more]
Pum11.587e-624.14pumilio RNA-binding family member 1 [Source:MGI Sy... [more]
Pum11.587e-624.14pumilio RNA-binding family member 1 [Source:MGI Sy... [more]
back to top
BLAST of PUM-HD domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|X1WGX5|PUM3_DANRE8.345e-4625.09Pumilio homolog 3 OS=Danio rerio OX=7955 GN=pum3 P... [more]
sp|Q562C7|PUM3_RAT5.491e-4525.49Pumilio homolog 3 OS=Rattus norvegicus OX=10116 GN... [more]
sp|Q15397|PUM3_HUMAN3.539e-4225.57Pumilio homolog 3 OS=Homo sapiens OX=9606 GN=PUM3 ... [more]
sp|Q8BKS9|PUM3_MOUSE1.430e-4025.22Pumilio homolog 3 OS=Mus musculus OX=10090 GN=Pum3... [more]
sp|Q9UU76|PUF6_SCHPO1.069e-3627.14Pumilio homology domain family member 6 OS=Schizos... [more]
back to top
BLAST of PUM-HD domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A369RZW93.517e-7329.68Pumilio-like protein 3 OS=Trichoplax sp. H2 OX=287... [more]
A0A2T7NPQ92.689e-6829.96PUM-HD domain-containing protein OS=Pomacea canali... [more]
A0A1S3K9S07.201e-6627.68pumilio homolog 3-like OS=Lingula unguis OX=7574 G... [more]
A0A1S3JCA01.074e-6527.68pumilio homolog 3 isoform X2 OS=Lingula unguis OX=... [more]
A0A1S3JC211.077e-6527.68pumilio homolog 3 isoform X1 OS=Lingula unguis OX=... [more]
back to top
BLAST of PUM-HD domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
pum39.445e-3825.69pumilio RNA binding family member 3 [Source:NCBI g... [more]
pum39.445e-3825.69pumilio RNA binding family member 3 [Source:NCBI g... [more]
back to top
BLAST of PUM-HD domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of PUM-HD domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
PUF64.969e-3123.84Pumilio-homology domain protein; binds the 3' UTR ... [more]
back to top
BLAST of PUM-HD domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO425481.753e-4931.02Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of PUM-HD domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
pum34.106e-5426.94pumilio RNA binding family member 3 [Source:NCBI g... [more]
back to top
BLAST of PUM-HD domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000023171.10.000e+099.33SMESG000023171.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30018034 ID=SMED30018034|Name=PUM-HD domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1859bp
TTAGTATCACATTTTTAACACGCTTATTTTCTCCCTAAATTTTAATTGAA
AAATGGAAAATGAAATTTCTACTAAAAAGAGGAAGCGCATGGAAAAGCAA
AATCGTCGCAAACATCCAATTATTTCCAAAGAAATAATTTTAATTTGGGA
AGAACTAAGACAAAAAAACGTCAAAACCGACAGAAAGTTTGAACTATGTG
ACAAAATTATTAGTGTATCAAAATCAGTTATAGCTGACTTAGTACAACAA
AAATCAACAGCTAGAGTTTTTGAAAGTGTTATTGAATTTGGAGTTGATGA
ACATAGATGGACAATTTTCGAAGTTATTAAAAAGGATATTTTGTTGCTAT
GTACTGGAGCATATTCTTATTTTGTTGTAAAATATATGTTAAAATTTGGA
ACCAAAGATCAGAGATTGGCAGTTTTCGACTTATTAACTGGTCATATTGT
TGACTTAATTCAACATGCTTATGCATCAAAAGTTGTTGAAGCGGCTTATA
ATGAGTTCGCAAATTCTAAGCAACGTAGTCATATGATTCAAGAATTTTAC
GGAAAAACATTTGCACTTTTCAATGATGGTAAAGAAATTAAACATCTATC
AGATTTCACTTCCAAATCCAATTTTGACATGACAATTTTAAATAATATTC
ACAAAGTTATTTTACCAATTATTAGAAAACAACAAATCGATTTGACACTT
GTCCAACATATTTTATTTGAATATGTCAATGTTTTAATAAAACCAATTAG
AGAAAATGCAGAATTAGCTAAACCTTACGAATCATTGCTCAATGAAATAA
TCGAGTTGATTAACGAACAATTGTTAAAACTGTGCAACACAAGAGAAGGT
ACAAAAGTAGCCATAACGTTATTTCACGAGTGCTCCATTAAATTAAGAAA
GAAAATTATTCAATCATTAAAAGAAGTGATCGTCGCAACTTGCCAGCATA
CAGATGCATATTTGTTTGTATTAACAGTTTTGGATCAAACTGATGATACA
AAAATGCTAAACAAATATGTTACAAAGCCAATTTTAGAAAATCTAGATGT
GATTTCTAACCATATTAATGGTAGAAAAATCATTTCCTTTATCGTAAATC
ACCGAGATAAAAAATTTTTAAGCAGTTACGTTTTGGATATATTAAAACAA
GGTGATGGAAACCGAGTCTCAAAGAAAGATTCTGTTATACGTGCAAAAGA
GATTTTGGAATTTGCCACTAAACCATTGTTACAGTGGCTGAATACTAACA
TTTGTGATTGCTTGCATTTCAGTTCTAAAATTCTTCTCGTGCATTCTATT
ATGACTAAATGCTTATCGTATGATGATGAATCGAAAACAATTTACAATAA
TCTTATGAAATCTATCGTTTTGTACGCTAATGAGCCATTAATTAAATCAG
AATCTGATTTAAAGAGAAAATTGAAAACCGAAACGAAAGCTGTGGTGAAA
AAGAAGATTAAAATGTTTACTGGGAAATTTCAGAAGGCAGATAATGAAAT
GGAAGTCGATGAAGTACCAGAAGAAACAGGTACGATTATTGAAGGCCATT
TATTGGAATCGTTCACTGGCAGTTTGATTGGTAAATCCTTGTGTAACTTG
GAAAAAGATGGCAAAATCGAGGGATTCTCTGATTTGTGCATTGAGAAATT
TTCCCCCGAAAATTTAATAAGTTTCATCAATAGCAATCGTTCAGCTTTTT
TCCTTGTTTCTCTTTTTGAAATCGGCAAAGAAACAGTTCAGAATTTTCTG
AAGCAACTTTTCCAATCAAGCCAAGAGGAAATGTCAAAATCCGACCTTGT
TGGGGTCAAGATTTTATACAAGCATTTGTTCTTAGAATAAATTCTGCAAT
CAAGCCAAG
back to top

protein sequence of SMED30018034-orf-1

>SMED30018034-orf-1 ID=SMED30018034-orf-1|Name=SMED30018034-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=596bp
MENEISTKKRKRMEKQNRRKHPIISKEIILIWEELRQKNVKTDRKFELCD
KIISVSKSVIADLVQQKSTARVFESVIEFGVDEHRWTIFEVIKKDILLLC
TGAYSYFVVKYMLKFGTKDQRLAVFDLLTGHIVDLIQHAYASKVVEAAYN
EFANSKQRSHMIQEFYGKTFALFNDGKEIKHLSDFTSKSNFDMTILNNIH
KVILPIIRKQQIDLTLVQHILFEYVNVLIKPIRENAELAKPYESLLNEII
ELINEQLLKLCNTREGTKVAITLFHECSIKLRKKIIQSLKEVIVATCQHT
DAYLFVLTVLDQTDDTKMLNKYVTKPILENLDVISNHINGRKIISFIVNH
RDKKFLSSYVLDILKQGDGNRVSKKDSVIRAKEILEFATKPLLQWLNTNI
CDCLHFSSKILLVHSIMTKCLSYDDESKTIYNNLMKSIVLYANEPLIKSE
SDLKRKLKTETKAVVKKKIKMFTGKFQKADNEMEVDEVPEETGTIIEGHL
LESFTGSLIGKSLCNLEKDGKIEGFSDLCIEKFSPENLISFINSNRSAFF
LVSLFEIGKETVQNFLKQLFQSSQEEMSKSDLVGVKILYKHLFLE*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000014zeta neoblast
PLANA:0002089reproductive organ
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR040059PUM3
IPR001313Pumilio_RNA-bd_rpt
IPR011989ARM-like
IPR012959CPL_dom
IPR033133PUM-HD
IPR016024ARM-type_fold
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
GO:0005488binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001313Pumilio RNA-binding repeatSMARTSM00025pum_5coord: 91..126
e-value: 2.8
score: 17.0
coord: 252..287
e-value: 0.62
score: 19.1
coord: 127..163
e-value: 0.098
score: 21.8
coord: 326..361
e-value: 130.0
score: 4.2
coord: 288..324
e-value: 180.0
score: 3.1
IPR012959CPL domainPFAMPF08144CPLcoord: 339..453
e-value: 2.8E-16
score: 60.1
IPR040059Pumilio homologue 3PANTHERPTHR13389UNCHARACTERIZEDcoord: 7..592
NoneNo IPR availablePANTHERPTHR13389:SF0PUMILIO HOMOLOG 3coord: 7..592
IPR033133Pumilio homology domainPROSITEPS50303PUM_HDcoord: 27..418
score: 17.96
IPR016024Armadillo-type foldSUPERFAMILYSSF48371ARM repeatcoord: 41..365