Cleavage and polyadenylation specificity factor subunit 5

Overview
NameCleavage and polyadenylation specificity factor subunit 5
Smed IDSMED30017978
Length (bp)539
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Cleavage and polyadenylation specificity factor subunit 5 (SMED30017978) t-SNE clustered cells

Violin plots show distribution of expression levels for Cleavage and polyadenylation specificity factor subunit 5 (SMED30017978) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Cleavage and polyadenylation specificity factor subunit 5 (SMED30017978) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Cleavage and polyadenylation specificity factor subunit 5 (SMED30017978) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30017978

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 12

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30017978h1SMcG0002932 SmedASXL_007031SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30017978h1SMcG0002932 SmedASXL_007031SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30017978h1SMcG0002933 SmedASXL_007031SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30017978h1SMcG0002933 SmedASXL_007031SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30017978h1SMcG0002932 SmedASXL_007031SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30017978h1SMcG0002932 SmedASXL_007031SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30017978h1SMcG0002933 SmedASXL_007031SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30017978h1SMcG0002933 SmedASXL_007031SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
body wall musculatureSMED30017978h1SMcG0002933 dd_Smed_v4_4067_0_1dd_Smed_v4PMID:30471994
Scimone et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
body wall musculatureSMED30017978h1SMcG0002932 dd_Smed_v4_4067_0_1dd_Smed_v4PMID:30471994
Scimone et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
body wall musculatureSMED30017978h1SMcG0002933 dd_Smed_v4_4067_0_1dd_Smed_v4PMID:30471994
Scimone et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
body wall musculatureSMED30017978h1SMcG0002932 dd_Smed_v4_4067_0_1dd_Smed_v4PMID:30471994
Scimone et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Human
Match: NUDT21 (nudix hydrolase 21 [Source:HGNC Symbol;Acc:HGNC:13870])

HSP 1 Score: 178.333 bits (451), Expect = 2.846e-56
Identity = 79/103 (76.70%), Postives = 90/103 (87.38%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFN 386
            + ++LGR DGV  DW ++DCIGNWWRPNFE P+YPYIPAHITKPKEH +LFLVQL E+ LFAVP NYKLVAAPLFEL+DNA  YGPIISSLPQ LSRFNF++N
Sbjct:  125 MTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 227
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Human
Match: NUDT21 (nudix hydrolase 21 [Source:HGNC Symbol;Acc:HGNC:13870])

HSP 1 Score: 156.762 bits (395), Expect = 7.084e-49
Identity = 70/91 (76.92%), Postives = 79/91 (86.81%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSL 350
            + ++LGR DGV  DW ++DCIGNWWRPNFE P+YPYIPAHITKPKEH +LFLVQL E+ LFAVP NYKLVAAPLFEL+DNA  YGPIISSL
Sbjct:   59 MTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 149
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Celegans
Match: cfim-1 (Cleavage Factor IM (CFIm) homolog [Source:UniProtKB/TrEMBL;Acc:Q93716])

HSP 1 Score: 171.014 bits (432), Expect = 6.248e-54
Identity = 75/102 (73.53%), Postives = 89/102 (87.25%), Query Frame = 3 
Query:   84 QMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFNE 389
            + LGR+DG   +WT+ED IGNWWRPNF+ PRYPYIPAH+TKPKEHT+L LVQLP ++ F VP N+KLVAAPLFEL+DNA AYGP+ISSLP TLSRFNF+FN+
Sbjct:  124 ETLGRTDGETNEWTIEDEIGNWWRPNFDPPRYPYIPAHVTKPKEHTKLLLVQLPSKSTFCVPKNFKLVAAPLFELYDNAAAYGPLISSLPTTLSRFNFIFND 225
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Fly
Match: Cpsf5 (gene:FBgn0035987 transcript:FBtr0110863)

HSP 1 Score: 169.474 bits (428), Expect = 4.519e-53
Identity = 76/102 (74.51%), Postives = 86/102 (84.31%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVF 383
            + + LGR DGV  +W VED IGNWWRPNFE P+YPYIP HITKPKEH RLFLVQL E+ LFAVP NYKLVAAPLFEL+DN++ YGPIISSLPQ L RFNF++
Sbjct:  135 LSETLGRQDGVKQEWIVEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLHEKALFAVPKNYKLVAAPLFELYDNSQGYGPIISSLPQALCRFNFIY 236
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Fly
Match: Cpsf5 (gene:FBgn0035987 transcript:FBtr0076456)

HSP 1 Score: 97.0561 bits (240), Expect = 3.514e-25
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPER 251
            + + LGR DGV  +W VED IGNWWRPNFE P+YPYIP HITKPKEH RLFLVQL E+
Sbjct:  135 LSETLGRQDGVKQEWIVEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLHEK 192
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Zebrafish
Match: nudt21 (nudix hydrolase 21 [Source:NCBI gene;Acc:394092])

HSP 1 Score: 178.718 bits (452), Expect = 1.247e-56
Identity = 79/103 (76.70%), Postives = 90/103 (87.38%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFN 386
            + ++LGR DGV  DW ++DCIGNWWRPNFE P+YPYIPAHITKPKEH +LFLVQL E+ LFAVP NYKLVAAPLFEL+DNA  YGPIISSLPQ LSRFNF++N
Sbjct:  126 MTEILGRQDGVKQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 228
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Xenopus
Match: nudt21 (nudix hydrolase 21 [Source:NCBI gene;Acc:550016])

HSP 1 Score: 178.718 bits (452), Expect = 1.902e-56
Identity = 79/103 (76.70%), Postives = 90/103 (87.38%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFN 386
            + ++LGR DGV  DW ++DCIGNWWRPNFE P+YPYIPAHITKPKEH +LFLVQL E+ LFAVP NYKLVAAPLFEL+DNA  YGPIISSLPQ LSRFNF++N
Sbjct:  125 MTEILGRQDGVQQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 227
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Xenopus
Match: nudt21 (nudix hydrolase 21 [Source:NCBI gene;Acc:550016])

HSP 1 Score: 167.548 bits (423), Expect = 3.778e-52
Identity = 75/97 (77.32%), Postives = 84/97 (86.60%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSR 368
            + ++LGR DGV  DW ++DCIGNWWRPNFE P+YPYIPAHITKPKEH +LFLVQL E+ LFAVP NYKLVAAPLFEL+DNA  YGPIISSLPQ LSR
Sbjct:  125 MTEILGRQDGVQQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSR 221
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Xenopus
Match: nudt21 (nudix hydrolase 21 [Source:NCBI gene;Acc:550016])

HSP 1 Score: 168.703 bits (426), Expect = 9.935e-52
Identity = 76/101 (75.25%), Postives = 86/101 (85.15%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFV 380
            + ++LGR DGV  DW ++DCIGNWWRPNFE P+YPYIPAHITKPKEH +LFLVQL E+ LFAVP NYKLVAAPLFEL+DNA  YGPIISSLPQ LSR + V
Sbjct:  125 MTEILGRQDGVQQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRGSEV 225
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Xenopus
Match: nudt21 (nudix hydrolase 21 [Source:NCBI gene;Acc:550016])

HSP 1 Score: 168.318 bits (425), Expect = 5.033e-51
Identity = 75/101 (74.26%), Postives = 85/101 (84.16%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFV 380
            + ++LGR DGV  DW ++DCIGNWWRPNFE P+YPYIPAHITKPKEH +LFLVQL E+ LFAVP NYKLVAAPLFEL+DNA  YGPIISSLPQ LS   F+
Sbjct:  125 MTEILGRQDGVQQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSSDEFL 225
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Mouse
Match: Nudt21 (nudix (nucleoside diphosphate linked moiety X)-type motif 21 [Source:MGI Symbol;Acc:MGI:1915469])

HSP 1 Score: 177.948 bits (450), Expect = 1.891e-56
Identity = 79/103 (76.70%), Postives = 90/103 (87.38%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFN 386
            + ++LGR DGV  DW ++DCIGNWWRPNFE P+YPYIPAHITKPKEH +LFLVQL E+ LFAVP NYKLVAAPLFEL+DNA  YGPIISSLPQ LSRFNF++N
Sbjct:  116 MTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 218
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Mouse
Match: Nudt21 (nudix (nucleoside diphosphate linked moiety X)-type motif 21 [Source:MGI Symbol;Acc:MGI:1915469])

HSP 1 Score: 178.333 bits (451), Expect = 2.019e-56
Identity = 79/103 (76.70%), Postives = 90/103 (87.38%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFN 386
            + ++LGR DGV  DW ++DCIGNWWRPNFE P+YPYIPAHITKPKEH +LFLVQL E+ LFAVP NYKLVAAPLFEL+DNA  YGPIISSLPQ LSRFNF++N
Sbjct:  125 MTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 227
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Mouse
Match: Nudt21 (nudix (nucleoside diphosphate linked moiety X)-type motif 21 [Source:MGI Symbol;Acc:MGI:1915469])

HSP 1 Score: 169.088 bits (427), Expect = 3.199e-54
Identity = 79/102 (77.45%), Postives = 87/102 (85.29%), Query Frame = 3 
Query:   84 QMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRF---NFV 380
            Q+LGR DGV  DW ++DCIGNWWRPNFE P+YPYIPAHITKPKEH +LFLVQL E+ LFAVP NYKLVAAPLFEL+DNA  YGPIISSLPQ LSR+   NFV
Sbjct:    1 QILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRYAELNFV 102
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Mouse
Match: Nudt21 (nudix (nucleoside diphosphate linked moiety X)-type motif 21 [Source:MGI Symbol;Acc:MGI:1915469])

HSP 1 Score: 102.449 bits (254), Expect = 1.766e-27
Identity = 48/95 (50.53%), Postives = 64/95 (67.37%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTL 362
            + ++LGR DGV  DW ++DCIGNWWRPNFE P+YPYIPAHITKPKEH +LFLVQL E+   ++    + + A + E    + AY     ++ Q L
Sbjct:   64 MTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKG--SILYTTEFLYAEVKEAVSMSTAYTCRRVTVEQVL 156
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. UniProt/SwissProt
Match: sp|Q7T3C6|CPSF5_DANRE (Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio OX=7955 GN=nudt21 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 9.415e-56
Identity = 79/103 (76.70%), Postives = 90/103 (87.38%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFN 386
            + ++LGR DGV  DW ++DCIGNWWRPNFE P+YPYIPAHITKPKEH +LFLVQL E+ LFAVP NYKLVAAPLFEL+DNA  YGPIISSLPQ LSRFNF++N
Sbjct:  126 MTEILGRQDGVKQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 228
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. UniProt/SwissProt
Match: sp|Q6DJE4|CPSF5_XENLA (Cleavage and polyadenylation specificity factor subunit 5 OS=Xenopus laevis OX=8355 GN=nudt21 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 9.439e-56
Identity = 79/103 (76.70%), Postives = 90/103 (87.38%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFN 386
            + ++LGR DGV  DW ++DCIGNWWRPNFE P+YPYIPAHITKPKEH +LFLVQL E+ LFAVP NYKLVAAPLFEL+DNA  YGPIISSLPQ LSRFNF++N
Sbjct:  125 MTEILGRQDGVQQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 227
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. UniProt/SwissProt
Match: sp|Q5RAI8|CPSF5_PONAB (Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo abelii OX=9601 GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.367e-55
Identity = 79/103 (76.70%), Postives = 90/103 (87.38%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFN 386
            + ++LGR DGV  DW ++DCIGNWWRPNFE P+YPYIPAHITKPKEH +LFLVQL E+ LFAVP NYKLVAAPLFEL+DNA  YGPIISSLPQ LSRFNF++N
Sbjct:  125 MTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 227
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. UniProt/SwissProt
Match: sp|O43809|CPSF5_HUMAN (Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens OX=9606 GN=NUDT21 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.367e-55
Identity = 79/103 (76.70%), Postives = 90/103 (87.38%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFN 386
            + ++LGR DGV  DW ++DCIGNWWRPNFE P+YPYIPAHITKPKEH +LFLVQL E+ LFAVP NYKLVAAPLFEL+DNA  YGPIISSLPQ LSRFNF++N
Sbjct:  125 MTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 227
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. UniProt/SwissProt
Match: sp|Q3ZCA2|CPSF5_BOVIN (Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus OX=9913 GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.367e-55
Identity = 79/103 (76.70%), Postives = 90/103 (87.38%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFN 386
            + ++LGR DGV  DW ++DCIGNWWRPNFE P+YPYIPAHITKPKEH +LFLVQL E+ LFAVP NYKLVAAPLFEL+DNA  YGPIISSLPQ LSRFNF++N
Sbjct:  125 MTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 227
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. TrEMBL
Match: A0A564YYJ9 (Nudix hydrolase domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS10773 PE=4 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.714e-59
Identity = 85/104 (81.73%), Postives = 98/104 (94.23%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFNE 389
            + +MLGRSDG+ VDW  E+CIGNW+RPNFE PRYPYIPAH+TKPKEHTRL+L+QLPE+T+FAVPSNYKLVAAPLFELFDNA+AYGPIISSLPQ LSRFNF+FN+
Sbjct:   49 LSEMLGRSDGIPVDWVPEECIGNWYRPNFEPPRYPYIPAHVTKPKEHTRLYLIQLPEKTMFAVPSNYKLVAAPLFELFDNARAYGPIISSLPQVLSRFNFIFND 152
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. TrEMBL
Match: A0A4S2LUG8 (Cleavage and polyadenylation specificity factor subunit 5 OS=Opisthorchis felineus OX=147828 GN=CRM22_004988 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.613e-59
Identity = 88/104 (84.62%), Postives = 97/104 (93.27%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFNE 389
            + +MLGR+DGV V W  EDCIGNWWRPNFE PRYPYIPAH+TKPKEHTRLFL+QLPE+TLFAVPSNYKLVAAPLFELFDNA+AYGPIISSLPQ LSRFNFV+N+
Sbjct:  112 LSEMLGRTDGVPVGWVPEDCIGNWWRPNFEPPRYPYIPAHVTKPKEHTRLFLMQLPEKTLFAVPSNYKLVAAPLFELFDNARAYGPIISSLPQVLSRFNFVYND 215
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. TrEMBL
Match: A0A074ZTP3 (Cleavage and polyadenylation specificity factor subunit 5 OS=Opisthorchis viverrini OX=6198 GN=T265_04165 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.613e-59
Identity = 88/104 (84.62%), Postives = 97/104 (93.27%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFNE 389
            + +MLGR+DGV V W  EDCIGNWWRPNFE PRYPYIPAH+TKPKEHTRLFL+QLPE+TLFAVPSNYKLVAAPLFELFDNA+AYGPIISSLPQ LSRFNFV+N+
Sbjct:  112 LSEMLGRTDGVPVGWVPEDCIGNWWRPNFEPPRYPYIPAHVTKPKEHTRLFLMQLPEKTLFAVPSNYKLVAAPLFELFDNARAYGPIISSLPQVLSRFNFVYND 215
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. TrEMBL
Match: G7YM70 (Cleavage and polyadenylation specificity factor subunit 5 OS=Clonorchis sinensis OX=79923 GN=CLF_112013 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.613e-59
Identity = 88/104 (84.62%), Postives = 97/104 (93.27%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFNE 389
            + +MLGR+DGV V W  EDCIGNWWRPNFE PRYPYIPAH+TKPKEHTRLFL+QLPE+TLFAVPSNYKLVAAPLFELFDNA+AYGPIISSLPQ LSRFNFV+N+
Sbjct:  112 LSEMLGRTDGVPVGWVPEDCIGNWWRPNFEPPRYPYIPAHVTKPKEHTRLFLMQLPEKTLFAVPSNYKLVAAPLFELFDNARAYGPIISSLPQVLSRFNFVYND 215
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. TrEMBL
Match: A0A5K3FIT9 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.507e-59
Identity = 86/104 (82.69%), Postives = 98/104 (94.23%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFNE 389
            +  MLGR+DGV V+WT E+CIGNWWRPNFE PRYPYIPAH+TKPKEHTRL+L+QLPE+TLFAVPSNYKLVAAPLFELFDN++AYGPIISSLPQ LSRFNFV+N+
Sbjct:   49 LSDMLGRTDGVPVEWTPEECIGNWWRPNFEPPRYPYIPAHVTKPKEHTRLYLIQLPEKTLFAVPSNYKLVAAPLFELFDNSRAYGPIISSLPQVLSRFNFVYND 152
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Cavefish
Match: nudt21 (nudix hydrolase 21 [Source:NCBI gene;Acc:103028483])

HSP 1 Score: 178.333 bits (451), Expect = 1.218e-56
Identity = 79/103 (76.70%), Postives = 90/103 (87.38%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFN 386
            + ++LGR DGV  DW ++DCIGNWWRPNFE P+YPYIPAHITKPKEH +LFLVQL E+ LFAVP NYKLVAAPLFEL+DNA  YGPIISSLPQ LSRFNF++N
Sbjct:  126 MTEILGRQDGVKQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 228
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Sea Lamprey
Match: nudt21 (nudix hydrolase 21 [Source:NCBI gene;Acc:394092])

HSP 1 Score: 177.178 bits (448), Expect = 7.722e-57
Identity = 80/109 (73.39%), Postives = 90/109 (82.57%), Query Frame = 3 
Query:   60 DFLLIKIVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFN 386
            D L   + ++LGR DGV  DW +EDCI NWWRPNFE  +YPYIPAHITKPKEH +LFLVQL E+ LFAVP NYKLVAAPLFEL+DNA  YGPIISSLPQ LSRFNF++N
Sbjct:  117 DGLKRLLAEILGRQDGVQQDWVIEDCISNWWRPNFEQAQYPYIPAHITKPKEHKKLFLVQLSEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 225
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Nematostella
Match: EDO47348 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RMH9])

HSP 1 Score: 142.895 bits (359), Expect = 1.392e-43
Identity = 72/107 (67.29%), Postives = 82/107 (76.64%), Query Frame = 3 
Query:   60 DFLLIKIVQMLGRSD-GVAVDWTVEDCIGNWWRPNFEHPR---YPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSR 368
            D L   + ++L R + G   DW VEDC+GNWWRPNFE P+   YPY+PAHITKPKE  +LFLVQL E+  FAVP NYKLVAAPLFELFDNA  YGPII+SLPQ LSR
Sbjct:   90 DGLKRSMTEILSRPEHGPEPDWFVEDCLGNWWRPNFEAPQARCYPYVPAHITKPKELRKLFLVQLGEKANFAVPRNYKLVAAPLFELFDNAPGYGPIIASLPQLLSR 196
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Medaka
Match: nudt21 (nudix hydrolase 21 [Source:NCBI gene;Acc:101165463])

HSP 1 Score: 178.718 bits (452), Expect = 9.397e-57
Identity = 79/103 (76.70%), Postives = 90/103 (87.38%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFN 386
            + ++LGR DGV  DW ++DCIGNWWRPNFE P+YPYIPAHITKPKEH +LFLVQL E+ LFAVP NYKLVAAPLFEL+DNA  YGPIISSLPQ LSRFNF++N
Sbjct:  127 MTEILGRQDGVKQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 229
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Medaka
Match: nudt21 (nudix hydrolase 21 [Source:NCBI gene;Acc:101165463])

HSP 1 Score: 167.548 bits (423), Expect = 1.805e-52
Identity = 75/97 (77.32%), Postives = 84/97 (86.60%), Query Frame = 3 
Query:   78 IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSR 368
            + ++LGR DGV  DW ++DCIGNWWRPNFE P+YPYIPAHITKPKEH +LFLVQL E+ LFAVP NYKLVAAPLFEL+DNA  YGPIISSLPQ LSR
Sbjct:  127 MTEILGRQDGVKQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSR 223
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Planmine SMEST
Match: SMESG000001062.1 (SMESG000001062.1)

HSP 1 Score: 224.172 bits (570), Expect = 5.138e-75
Identity = 106/108 (98.15%), Postives = 108/108 (100.00%), Query Frame = 3 
Query:   66 LLIKIVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFNE 389
            LL++IVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFNE
Sbjct:  104 LLMEIVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFNE 211
[Close]
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Planmine SMEST
Match: SMESG000001062.1 (SMESG000001062.1)

HSP 1 Score: 216.468 bits (550), Expect = 5.868e-72
Identity = 103/110 (93.64%), Postives = 106/110 (96.36%), Query Frame = 3 
Query:   60 DFLLIKIVQMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFNE 389
            D L   +++MLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFNE
Sbjct:   99 DGLKRLLMEMLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLVQLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFNE 208
The following BLAST results are available for this feature:
BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 2
Match NameE-valueIdentityDescription
NUDT212.846e-5676.70nudix hydrolase 21 [Source:HGNC Symbol;Acc:HGNC:13... [more]
NUDT217.084e-4976.92nudix hydrolase 21 [Source:HGNC Symbol;Acc:HGNC:13... [more]
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BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
cfim-16.248e-5473.53Cleavage Factor IM (CFIm) homolog [Source:UniProt... [more]
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BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Cpsf54.519e-5374.51gene:FBgn0035987 transcript:FBtr0110863[more]
Cpsf53.514e-2572.41gene:FBgn0035987 transcript:FBtr0076456[more]
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BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
nudt211.247e-5676.70nudix hydrolase 21 [Source:NCBI gene;Acc:394092][more]
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BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 4
Match NameE-valueIdentityDescription
nudt211.902e-5676.70nudix hydrolase 21 [Source:NCBI gene;Acc:550016][more]
nudt213.778e-5277.32nudix hydrolase 21 [Source:NCBI gene;Acc:550016][more]
nudt219.935e-5275.25nudix hydrolase 21 [Source:NCBI gene;Acc:550016][more]
nudt215.033e-5174.26nudix hydrolase 21 [Source:NCBI gene;Acc:550016][more]
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BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Nudt211.891e-5676.70nudix (nucleoside diphosphate linked moiety X)-typ... [more]
Nudt212.019e-5676.70nudix (nucleoside diphosphate linked moiety X)-typ... [more]
Nudt213.199e-5477.45nudix (nucleoside diphosphate linked moiety X)-typ... [more]
Nudt211.766e-2750.53nudix (nucleoside diphosphate linked moiety X)-typ... [more]
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BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q7T3C6|CPSF5_DANRE9.415e-5676.70Cleavage and polyadenylation specificity factor su... [more]
sp|Q6DJE4|CPSF5_XENLA9.439e-5676.70Cleavage and polyadenylation specificity factor su... [more]
sp|Q5RAI8|CPSF5_PONAB1.367e-5576.70Cleavage and polyadenylation specificity factor su... [more]
sp|O43809|CPSF5_HUMAN1.367e-5576.70Cleavage and polyadenylation specificity factor su... [more]
sp|Q3ZCA2|CPSF5_BOVIN1.367e-5576.70Cleavage and polyadenylation specificity factor su... [more]
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BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A564YYJ93.714e-5981.73Nudix hydrolase domain-containing protein OS=Hymen... [more]
A0A4S2LUG84.613e-5984.62Cleavage and polyadenylation specificity factor su... [more]
A0A074ZTP34.613e-5984.62Cleavage and polyadenylation specificity factor su... [more]
G7YM704.613e-5984.62Cleavage and polyadenylation specificity factor su... [more]
A0A5K3FIT95.507e-5982.69Uncharacterized protein OS=Mesocestoides corti OX=... [more]
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BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
nudt211.218e-5676.70nudix hydrolase 21 [Source:NCBI gene;Acc:103028483... [more]
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BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
nudt217.722e-5773.39nudix hydrolase 21 [Source:NCBI gene;Acc:394092][more]
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BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO473481.392e-4367.29Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
nudt219.397e-5776.70nudix hydrolase 21 [Source:NCBI gene;Acc:101165463... [more]
nudt211.805e-5277.32nudix hydrolase 21 [Source:NCBI gene;Acc:101165463... [more]
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BLAST of Cleavage and polyadenylation specificity factor subunit 5 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000001062.15.138e-7598.15SMESG000001062.1[more]
SMESG000001062.15.868e-7293.64SMESG000001062.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30017978 ID=SMED30017978|Name=Cleavage and polyadenylation specificity factor subunit 5|organism=Schmidtea mediterranea sexual|type=transcript|length=539bp
TTAAATTTTGGATAAATAACACTGATAAAAACATCGAAATCTTATGTTAT
ACTTAACGTGATTTTCTTTTAATAAAGATCGTTCAGATGCTTGGTCGAAG
TGATGGTGTAGCTGTTGATTGGACTGTTGAAGATTGTATTGGAAATTGGT
GGCGTCCAAACTTTGAGCATCCAAGATACCCATATATACCCGCTCACATA
ACTAAACCAAAGGAACACACTAGGTTGTTTCTTGTTCAACTTCCTGAAAG
AACTTTATTTGCCGTTCCTAGCAATTATAAACTTGTTGCTGCTCCTCTGT
TTGAGTTATTTGATAATGCTAAAGCATATGGTCCGATAATCTCATCTTTG
CCTCAGACCCTCAGCAGGTTCAATTTTGTATTTAATGAATGAAGTGAATA
AATTTTTGTTGTTTTTACGTTTATTTGTAATCATAATAAAAGTCAATGTG
AAACAGGTACAATTTGGCTTTAATTTTATTGTTGAAAATGTACATAAACT
TTTTGAATTTATTGTAAAAAATAAAAAGATATCTTTGAT
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protein sequence of SMED30017978-orf-1

>SMED30017978-orf-1 ID=SMED30017978-orf-1|Name=SMED30017978-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=102bp
MLGRSDGVAVDWTVEDCIGNWWRPNFEHPRYPYIPAHITKPKEHTRLFLV
QLPERTLFAVPSNYKLVAAPLFELFDNAKAYGPIISSLPQTLSRFNFVFN
E*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
GO:0003729mRNA binding
GO:0016787hydrolase activity
Vocabulary: cellular component
TermDefinition
GO:0005634nucleus
GO:0005737cytoplasm
GO:0005849mRNA cleavage factor complex
Vocabulary: biological process
TermDefinition
GO:0006397mRNA processing
GO:0006378mRNA polyadenylation
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000240body wall musculature
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR016706Cleav_polyA_spec_factor_su5
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016706Cleavage/polyadenylation specificity factor subunit 5PFAMPF13869NUDIX_2coord: 2..95
e-value: 1.4E-40
score: 138.9
IPR016706Cleavage/polyadenylation specificity factor subunit 5PANTHERPTHR13047PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNITcoord: 4..99
NoneNo IPR availableGENE3DG3DSA:3.90.79.10coord: 1..100
e-value: 4.6E-45
score: 155.4
NoneNo IPR availablePANTHERPTHR13047:SF0CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 5coord: 4..99