TLC domain-containing protein

Overview


Name	TLC domain-containing protein
Smed ID	SMED30017888
Length (bp)	987

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of TLC domain-containing protein (SMED30017888) t-SNE clustered cells

Violin plots show distribution of expression levels for TLC domain-containing protein (SMED30017888) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of TLC domain-containing protein (SMED30017888) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for TLC domain-containing protein (SMED30017888) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30017888

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 5

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
pharynx	SMED30017888	SMESG000068531.1	dd_Smed_v4_9135_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30017888	SMESG000068531.1	dd_Smed_v4_9135_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30017888	SMESG000068531.1	dd_Smed_v4_9135_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
head region	SMED30017888	SMESG000068531.1	dd_Smed_v6_9135_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
Category 4 cell	SMED30017888	SMESG000068531.1	dd_Smed_v4_9135_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017

Note: Hover over icons to view figure legend

Homology

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BLAST of TLC domain-containing protein vs. Ensembl Human
Match: TLCD1 (TLC domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25177])

HSP 1 Score: 60.077 bits (144), Expect = 8.457e-10
Identity = 31/143 (21.68%), Postives = 76/143 (53.15%), Query Frame = 2

Query:  125 PVKLSECHNYLISLTHAVITSINCLLLIFYSEEIRNDLKASNTYAECILS-FSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYC---INTAMLFI 541
            P++    HN L+S  H++++ I  LL ++ + ++  +++ + + +  +L  FS GYF++D+  ++  G     +  ++HH+  +    + +    F+   +  ++VE++NIF+ +R +M+  +  +   Y     +N  M F+
Sbjct:   39 PLRTWRWHNLLVSFAHSIVSGIWALLCVWQTPDMLVEIETAWSLSGYLLVCFSAGYFIHDTVDIVASGQTRASWEYLVHHVMAMGAFFSGIFWSSFVGGGVLTLLVEVSNIFLTIRMMMKISNAQDHLLYRVNKYVNLVMYFL 181

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BLAST of TLC domain-containing protein vs. Ensembl Celegans
Match: Y48G8AL.13 (pep chromosome:WBcel235:I:1223959:1227858:-1 gene:WBGene00021691.1 transcript:Y48G8AL.13a.3 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y48G8AL.13)

HSP 1 Score: 48.1358 bits (113), Expect = 3.529e-6
Identity = 32/111 (28.83%), Postives = 59/111 (53.15%), Query Frame = 2

Query:  155 LISLTHAVITSINCLL-LIFYSEEIRNDLKASNTYAECILSFSFGYFLYDSCSL-IKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMR 481
            ++S THA+++++ C+  L+     +R         AE +  FS GYF+YD   + I   L S + ++ IHH  V+   +  L +      ++  ++VEI  +F+HLR ++R
Sbjct:   44 VVSFTHALVSALGCIFSLLTDVNYVREPYDYHKANAEYVFLFSMGYFIYDLLDMHIHGELESSKEYL-IHHSLVITAFSIILLSGRLFGLAMIALLVEIQTVFLHLRTMVR 153

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BLAST of TLC domain-containing protein vs. Ensembl Celegans
Match: Y48G8AL.13 (pep chromosome:WBcel235:I:1223959:1229282:-1 gene:WBGene00021691.1 transcript:Y48G8AL.13a.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y48G8AL.13)

HSP 1 Score: 48.1358 bits (113), Expect = 3.529e-6
Identity = 32/111 (28.83%), Postives = 59/111 (53.15%), Query Frame = 2

Query:  155 LISLTHAVITSINCLL-LIFYSEEIRNDLKASNTYAECILSFSFGYFLYDSCSL-IKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMR 481
            ++S THA+++++ C+  L+     +R         AE +  FS GYF+YD   + I   L S + ++ IHH  V+   +  L +      ++  ++VEI  +F+HLR ++R
Sbjct:   44 VVSFTHALVSALGCIFSLLTDVNYVREPYDYHKANAEYVFLFSMGYFIYDLLDMHIHGELESSKEYL-IHHSLVITAFSIILLSGRLFGLAMIALLVEIQTVFLHLRTMVR 153

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BLAST of TLC domain-containing protein vs. Ensembl Celegans
Match: Y48G8AL.13 (pep chromosome:WBcel235:I:1223957:1226812:-1 gene:WBGene00021691.1 transcript:Y48G8AL.13a.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y48G8AL.13)

HSP 1 Score: 48.1358 bits (113), Expect = 3.529e-6
Identity = 32/111 (28.83%), Postives = 59/111 (53.15%), Query Frame = 2

Query:  155 LISLTHAVITSINCLL-LIFYSEEIRNDLKASNTYAECILSFSFGYFLYDSCSL-IKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMR 481
            ++S THA+++++ C+  L+     +R         AE +  FS GYF+YD   + I   L S + ++ IHH  V+   +  L +      ++  ++VEI  +F+HLR ++R
Sbjct:   44 VVSFTHALVSALGCIFSLLTDVNYVREPYDYHKANAEYVFLFSMGYFIYDLLDMHIHGELESSKEYL-IHHSLVITAFSIILLSGRLFGLAMIALLVEIQTVFLHLRTMVR 153

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BLAST of TLC domain-containing protein vs. Ensembl Zebrafish
Match: tlcd1 (TLC domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041010-173])

HSP 1 Score: 58.5362 bits (140), Expect = 1.647e-9
Identity = 37/155 (23.87%), Postives = 78/155 (50.32%), Query Frame = 2

Query:  131 KLSECHNYLISLTHAVITSINCLLLIFYSEEIRNDLKASNT-YAECILSFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILRWGFLTPLSFYL 592
            K  +  N  +SL H+++T    +  + Y   + +++ ++ T  A  ++  S GYF+ D+  ++  G     +  ++HH+ VL     A+    ++A ++  + VE+N++F+H R L+    V      Y +N  +  +++V  R G    L++YL
Sbjct:   45 KTWKWRNLSVSLVHSLLTGTWAVACVIYYPAMVHEIHSTYTPSAYMLVVVSSGYFIEDAADIVFSGHAKASWEFLLHHVLVLWCFLYAVFTHQYVAGAVVALFVEVNSVFLHTRLLLNLAKVAHSSLIYTVNKVLNVVTYVTFRLGAQFYLTWYL 199

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BLAST of TLC domain-containing protein vs. Ensembl Zebrafish
Match: tlcd2 (TLC domain containing 2 [Source:NCBI gene;Acc:559420])

HSP 1 Score: 56.9954 bits (136), Expect = 5.111e-9
Identity = 42/188 (22.34%), Postives = 99/188 (52.66%), Query Frame = 2

Query:  140 ECHNYLISLTHAVITSINCLLLIFYSEEIRNDL-KASNTYAECILSFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILRWGFLTPLSFYLFKEVLQEHVIIIVAVYPAFIGFLILNVYMSCLLMFK 700
            + +N   S  H++IT +  +L      ++  DL +  + ++  ++S S GYF+YD   ++        + ++ HH+ V+     ++    ++ F++  ++VEIN++F+HLR+++R  ++ +  FY  +N+ +   ++V+ R   L  ++ +L   VL   +I + +     +G  I+   M+ +L ++
Sbjct:   39 KWNNISTSFVHSLITGVWSVLCFCMHPQMAEDLIETHSVFSHALVSVSIGYFIYDFLDMVINQKIIHSWELLFHHVVVITCFGISVLTCRYVGFAVVALLVEINSVFLHLRQVLRMANLAKSTFYR-VNSMINLGTYVVFRINTLAWMTRWL---VLNRDLIPLFSYTIGSVGLAIMTA-MNIVLFYR 221

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BLAST of TLC domain-containing protein vs. Ensembl Zebrafish
Match: tlcd4b (TLC domain containing 4b [Source:NCBI gene;Acc:449652])

HSP 1 Score: 48.1358 bits (113), Expect = 6.175e-6
Identity = 36/156 (23.08%), Postives = 71/156 (45.51%), Query Frame = 2

Query:  125 PVKLSECHNYLISLTHAVITSINCLLLIFYSEEIRND-LKASNTYAECILSFSFGYFLYD----SCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILRWGFLTP 577
            P KL++ ++ L+S  HA+I  + CL +++Y + +  D +       +  ++ + GY  YD    +C+   +G   D FF V HH++ L      L+  +   F+   +I E++  F++ R        P        N   + + F ++R   + P
Sbjct:   40 PNKLNDWNSRLVSTVHALIVGLFCLYILWYDDAVNEDPVWGDPNLVKLNVAITCGYLFYDLLLLACNWSTMG---DVFF-VCHHLAALYAYGYVLTRGVLPYFANFRLISELSTPFVNQRWFFEALAYPRTHQLVVANGIAMAVVFFLVRIAVMPP 191

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Query:  125 PVKLSECHNYLISLTHAVITSINCLLLIFYSEEIRND-LKASNTYAECILSFSFGYFLYD----SCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILRWGFLTP 577
            P KL++ ++ L+S  HA+I  + CL +++Y + +  D +       +  ++ + GY  YD    +C+   +G   D FF V HH++ L      L+  +   F+   +I E++  F++ R        P        N   + + F ++R   + P
Sbjct:   40 PNKLNDWNSRLVSTVHALIVGLFCLYILWYDDAVNEDPVWGDPNLVKLNVAITCGYLFYDLLLLACNWSTMG---DVFF-VCHHLAALYAYGYVLTRGVLPYFANFRLISELSTPFVNQRWFFEALAYPRTHQLVVANGIAMAVVFFLVRIAVMPP 191

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BLAST of TLC domain-containing protein vs. Ensembl Xenopus
Match: TLCD2 (TLC domain containing 2 [Source:NCBI gene;Acc:100497270])

HSP 1 Score: 56.6102 bits (135), Expect = 9.262e-9
Identity = 47/199 (23.62%), Postives = 102/199 (51.26%), Query Frame = 2

Query:  149 NYLISLTHAVITSINCLLLIFYSEEIRNDLKASNT-YAECILSFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILRWGFLTPLSFYLFKEVLQEHVIIIVAVYPAFIGFLI---LNVYMSCLLMFKNELWFSLNPKN 733
            N   S  H++IT    LL  +   E+  DL ++++ ++  +++ S GYF++D   +++       + ++ HH  V+     ++    ++ F++  ++VEIN+IF+HLR+++   ++ +  FY  +N+ +   ++VI R   L  ++ +L   VL    I +V      +G  I   +N+ + C L+  + L  +  P+ 
Sbjct:   39 NIWTSFVHSLITGSWALLGFYLHPEMAEDLISTHSLFSHSLVAVSIGYFIHDFLDMLQNQKLHQSWELLFHHTVVITCFGISVVLHHYVGFAVVALLVEINSIFLHLRQILLMANLLKTTFYR-LNSLLNLGTYVIFRISTLAWMTRWL---VLNRDNIPLVIYTIGSVGMAIMTVMNIILFCRLLRSDFLKSTREPQR 233

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BLAST of TLC domain-containing protein vs. Ensembl Mouse
Match: Tlcd1 (TLC domain containing 1 [Source:MGI Symbol;Acc:MGI:1915572])

HSP 1 Score: 60.077 bits (144), Expect = 3.914e-10
Identity = 29/120 (24.17%), Postives = 69/120 (57.50%), Query Frame = 2

Query:  125 PVKLSECHNYLISLTHAVITSINCLLLIFYSEEIRNDLKASNTYAECIL-SFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMR 481
            P++    HN L+S TH++++ I  LL ++ + E+  +++ + + +  +L  FS GYF++D+  ++        +  ++HH+  +    + +  + F+   +  ++VE++NIF+ LR +M+
Sbjct:   39 PLRTWRWHNLLVSFTHSIVSGIWALLCLWQTPEMLVEIETAWSASGYLLVCFSAGYFIHDTVDIVVSKQTRASWEYLVHHVMAMGAFFSGIFWKRFVGGGVLTLLVEVSNIFLTLRMMMK 158

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BLAST of TLC domain-containing protein vs. Ensembl Mouse
Match: Tlcd1 (TLC domain containing 1 [Source:MGI Symbol;Acc:MGI:1915572])

HSP 1 Score: 60.077 bits (144), Expect = 4.461e-10
Identity = 29/120 (24.17%), Postives = 69/120 (57.50%), Query Frame = 2

Query:  125 PVKLSECHNYLISLTHAVITSINCLLLIFYSEEIRNDLKASNTYAECIL-SFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMR 481
            P++    HN L+S TH++++ I  LL ++ + E+  +++ + + +  +L  FS GYF++D+  ++        +  ++HH+  +    + +  + F+   +  ++VE++NIF+ LR +M+
Sbjct:   39 PLRTWRWHNLLVSFTHSIVSGIWALLCLWQTPEMLVEIETAWSASGYLLVCFSAGYFIHDTVDIVVSKQTRASWEYLVHHVMAMGAFFSGIFWKRFVGGGVLTLLVEVSNIFLTLRMMMK 158

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BLAST of TLC domain-containing protein vs. UniProt/SwissProt
Match: sp|Q99JT6|TLCD1_MOUSE (TLC domain-containing protein 1 OS=Mus musculus OX=10090 GN=Tlcd1 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 3.120e-9
Identity = 29/120 (24.17%), Postives = 69/120 (57.50%), Query Frame = 2

Query:  125 PVKLSECHNYLISLTHAVITSINCLLLIFYSEEIRNDLKASNTYAECIL-SFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMR 481
            P++    HN L+S TH++++ I  LL ++ + E+  +++ + + +  +L  FS GYF++D+  ++        +  ++HH+  +    + +  + F+   +  ++VE++NIF+ LR +M+
Sbjct:   39 PLRTWRWHNLLVSFTHSIVSGIWALLCLWQTPEMLVEIETAWSASGYLLVCFSAGYFIHDTVDIVVSKQTRASWEYLVHHVMAMGAFFSGIFWKRFVGGGVLTLLVEVSNIFLTLRMMMK 158

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BLAST of TLC domain-containing protein vs. UniProt/SwissProt
Match: sp|Q96CP7|TLCD1_HUMAN (TLC domain-containing protein 1 OS=Homo sapiens OX=9606 GN=TLCD1 PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 4.061e-9
Identity = 31/143 (21.68%), Postives = 76/143 (53.15%), Query Frame = 2

Query:  125 PVKLSECHNYLISLTHAVITSINCLLLIFYSEEIRNDLKASNTYAECILS-FSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYC---INTAMLFI 541
            P++    HN L+S  H++++ I  LL ++ + ++  +++ + + +  +L  FS GYF++D+  ++  G     +  ++HH+  +    + +    F+   +  ++VE++NIF+ +R +M+  +  +   Y     +N  M F+
Sbjct:   39 PLRTWRWHNLLVSFAHSIVSGIWALLCVWQTPDMLVEIETAWSLSGYLLVCFSAGYFIHDTVDIVASGQTRASWEYLVHHVMAMGAFFSGIFWSSFVGGGVLTLLVEVSNIFLTIRMMMKISNAQDHLLYRVNKYVNLVMYFL 181

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BLAST of TLC domain-containing protein vs. UniProt/SwissProt
Match: sp|Q5U2T1|TLCD1_RAT (TLC domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Tlcd1 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.420e-9
Identity = 30/122 (24.59%), Postives = 70/122 (57.38%), Query Frame = 2

Query:  125 PVKLSECHNYLISLTHAVITSINCLLLIFYSEEIRNDLKASNTYAEC---ILSFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMR 481
            P++    HN L+S TH++++ I  LL I+ + E+  +++ +  ++ C   ++ FS GYF++D+  ++        +  ++HH+  +    + +  + F+   +  ++VE++NIF+ LR +M+
Sbjct:   39 PLRTWRWHNLLVSFTHSIVSGIWALLCIWQTPEMLVEIETA--WSVCGYLLVCFSAGYFIHDTVDIVVSRQTRASWEYLVHHVMAMGAFFSGIFWKRFVGGGVLTLLVEVSNIFLTLRMMMK 158

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BLAST of TLC domain-containing protein vs. UniProt/SwissProt
Match: sp|A8WGS4|TLCD2_DANRE (TLC domain-containing protein 2 OS=Danio rerio OX=7955 GN=tlcd2 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 3.858e-8
Identity = 42/188 (22.34%), Postives = 99/188 (52.66%), Query Frame = 2

Query:  140 ECHNYLISLTHAVITSINCLLLIFYSEEIRNDL-KASNTYAECILSFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILRWGFLTPLSFYLFKEVLQEHVIIIVAVYPAFIGFLILNVYMSCLLMFK 700
            + +N   S  H++IT +  +L      ++  DL +  + ++  ++S S GYF+YD   ++        + ++ HH+ V+     ++    ++ F++  ++VEIN++F+HLR+++R  ++ +  FY  +N+ +   ++V+ R   L  ++ +L   VL   +I + +     +G  I+   M+ +L ++
Sbjct:   39 KWNNISTSFVHSLITGVWSVLCFCMHPQMAEDLIETHSVFSHALVSVSIGYFIYDFLDMVINQKIIHSWELLFHHVVVITCFGISVLTCRYVGFAVVALLVEINSVFLHLRQVLRMANLAKSTFYR-VNSMINLGTYVVFRINTLAWMTRWL---VLNRDLIPLFSYTIGSVGLAIMTA-MNIVLFYR 221

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BLAST of TLC domain-containing protein vs. UniProt/SwissProt
Match: sp|F1NZP5|TLCD1_CHICK (TLC domain-containing protein 1 OS=Gallus gallus OX=9031 GN=TLCD1 PE=1 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 7.136e-7
Identity = 34/142 (23.94%), Postives = 71/142 (50.00%), Query Frame = 2

Query:  125 PVKLSECHNYLISLTHAVITSINCLLLIFYSEEIRNDLKAS-NTYAECILSFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYC---INTAMLF 538
            P ++    N L+S  H+V+  +  L  ++ S E+ +D++   +     ++ FS GYF++DS  +I        +  ++HH   +    + +    F+  ++  ++VE++NIF+ +R L++  +VP    Y     +N  M F
Sbjct:   40 PGRVWRWRNLLVSFAHSVLAGLWALFSLWQSPELLSDIQDGYSVSGHLLVCFSSGYFIHDSLDIIFNQQSRSSWEYLVHHAMAISAFVSLIITGRFLVAAMLLLLVEVSNIFLTIRMLLKMSNVPSPALYEANKYVNLVMYF 181

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BLAST of TLC domain-containing protein vs. TrEMBL
Match: A0A0A9WGL4 (TLC domain-containing protein 2 OS=Lygus hesperus OX=30085 GN=tlcd2_1 PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.458e-15
Identity = 45/141 (31.91%), Postives = 80/141 (56.74%), Query Frame = 2

Query:  140 ECHNYLISLTHAVITSINCLLLIFYSEEIRNDLKAS-NTYAECILSFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILR 559
            +  N   SL H+ IT I   L  +Y+ E+R DL    N  ++ ++SFS GYF YD   +     +S  + +++HH  V+L  + A++ + +  +S+  ++VE+N+IF+H+R+LM   D  +    Y +N ++   +FVI R
Sbjct:   55 KWRNIANSLIHSFITGIGACLCFYYTPEMRKDLVGPINLASQHLISFSIGYFTYDMLDMAMNDRKSKTYELLLHHFMVILCFSTAVTGRTYQGYSLMALLVEVNSIFLHVRQLMILTDFSKNSVAYRVNNSLNMGTFVIFR 195

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BLAST of TLC domain-containing protein vs. TrEMBL
Match: A0A146KZI6 (TLC domain-containing protein 2 OS=Lygus hesperus OX=30085 GN=tlcd2 PE=4 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.852e-15
Identity = 45/141 (31.91%), Postives = 80/141 (56.74%), Query Frame = 2

Query:  140 ECHNYLISLTHAVITSINCLLLIFYSEEIRNDLKAS-NTYAECILSFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILR 559
            +  N   SL H+ IT I   L  +Y+ E+R DL    N  ++ ++SFS GYF YD   +     +S  + +++HH  V+L  + A++ + +  +S+  ++VE+N+IF+H+R+LM   D  +    Y +N ++   +FVI R
Sbjct:   55 KWRNIANSLIHSFITGIGACLCFYYTPEMRKDLVGPINLASQHLISFSIGYFTYDMLDMAMNDRKSKTYELLLHHFMVILCFSTAVTGRTYQGYSLMALLVEVNSIFLHVRQLMILTDFSKNSTAYRVNNSLNMGTFVIFR 195

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BLAST of TLC domain-containing protein vs. TrEMBL
Match: A0A0A9VU59 (TLC domain-containing protein 2 OS=Lygus hesperus OX=30085 GN=tlcd2_0 PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.881e-15
Identity = 44/141 (31.21%), Postives = 80/141 (56.74%), Query Frame = 2

Query:  140 ECHNYLISLTHAVITSINCLLLIFYSEEIRNDLKAS-NTYAECILSFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILR 559
            +  N   SL H+ IT I   L  +Y+ E+R DL    N  ++ ++SFS GYF YD   +     +S  + +++HH  V+L  + A++ + +  +S+  ++VE+N+IF+H+R+LM   D  +    Y +N ++   +FV+ R
Sbjct:   55 KWRNIANSLIHSFITGIGACLCFYYTPEMRKDLVGPINLASQHLISFSIGYFTYDMLDMAMNDRKSKTYELLLHHFMVILCFSTAVTGRTYQGYSLMALLVEVNSIFLHVRQLMILTDFSKNSVAYRVNNSLNMGTFVVCR 195

[Close]

BLAST of TLC domain-containing protein vs. TrEMBL
Match: E4YBW1 (TLC domain-containing protein OS=Oikopleura dioica OX=34765 GN=GSOID_T00020918001 PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.200e-12
Identity = 44/147 (29.93%), Postives = 84/147 (57.14%), Query Frame = 2

Query:  131 KLSECHNYLISLTHAVITSINCLLLIFYSEEIRNDLK-ASNTYAECILSFSFGYFLYDSCSLI---KIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILR 559
            K +E  N  +S+ H+  + I  L+ I    EI  D+  A +  + C+ SF+FGYF+YD   L+   +  +  + F I++HH+ V+    + +  Q ++  S+  +++E+N++F+HLRK+ R +D+  G  Y+ I  A+ F++ +  R
Sbjct:   14 KRTETINLAVSVFHSFFSGIGALIAITRMPEILEDMVYAHSNLSACVTSFTFGYFVYDFFDLLAASRWSISKNNFDIILHHVLVICCFGSCVVQQRYMGLSMLSILMEVNSVFLHLRKISRNFDIRSGIVYHAI-VALNFLTLIAFR 159

[Close]

BLAST of TLC domain-containing protein vs. TrEMBL
Match: E4WSD7 (TLC domain-containing protein OS=Oikopleura dioica OX=34765 GN=GSOID_T00000673001 PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.468e-12
Identity = 44/147 (29.93%), Postives = 84/147 (57.14%), Query Frame = 2

Query:  131 KLSECHNYLISLTHAVITSINCLLLIFYSEEIRNDLK-ASNTYAECILSFSFGYFLYDSCSLI---KIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILR 559
            K +E  N  +S+ H+  + I  L+ I    EI  D+  A +  + C+ SF+FGYF+YD   L+   +  +  + F I++HH+ V+    + +  Q ++  S+  +++E+N++F+HLRK+ R +D+  G  Y+ I  A+ F++ +  R
Sbjct:   35 KRTETINLAVSVFHSFFSGIGALIAITRMPEILEDMVYAHSNLSACVTSFTFGYFVYDFFDLLAASRWSISKNNFDIILHHVLVICCFGSCVVQQRYMGLSMLSILMEVNSVFLHLRKISRNFDIRSGIVYHAI-VALNFLTLIAFR 180

[Close]

BLAST of TLC domain-containing protein vs. Ensembl Cavefish
Match: tlcd2 (TLC domain-containing protein 2 [Source:NCBI gene;Acc:103028751])

HSP 1 Score: 65.4698 bits (158), Expect = 5.807e-12
Identity = 46/188 (24.47%), Postives = 101/188 (53.72%), Query Frame = 2

Query:  140 ECHNYLISLTHAVITSINCLLLIFYSEEIRNDL-KASNTYAECILSFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILRWGFLTPLSFYLFKEVLQEHVIIIVAVYPAFIGFLILNVYMSCLLMFK 700
            +  N   S  H++IT +  +L  +   ++  DL +  + ++  ++S S GYF+YD   ++        + ++ HH+ V+     ++    +I F++  ++VEIN+IF+HLR+++R  +V +  FY  +N+ +   ++V+ R   L  ++ +L   VL   +I +++     +G  I+ V M+ +L ++
Sbjct:   39 KWRNICTSFIHSLITGVWAVLCFYMHPQMAEDLIETHSVFSHALVSVSIGYFIYDFLDMVLNQKIYQSWELLFHHVVVITCFGLSVLTCRYIGFAVVALLVEINSIFLHLRQMLRMANVSKSTFYR-VNSMINLGTYVVFRINTLAWMTRWL---VLNRDLIPLLSYTVGSVGLAIMTV-MNIVLFYR 221

[Close]

BLAST of TLC domain-containing protein vs. Ensembl Cavefish
Match: tlcd1 (TLC domain containing 1 [Source:NCBI gene;Acc:103044061])

HSP 1 Score: 53.5286 bits (127), Expect = 7.589e-8
Identity = 42/155 (27.10%), Postives = 81/155 (52.26%), Query Frame = 2

Query:  131 KLSECHNYLISLTHAVITSINCLLLIFYSEEIRNDLKASNT-YAECILSFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILRWGFLTPLSFYL 592
            K     N  +SL H++++    +  +     + +DL +S T  A  ++  S GYF+ D+  +I  G   + +  +IHH+ V+ T   AL   +++A ++  + VE+N++F+HLR L++   VP     Y +N  +   +++  R G    LS+Y+
Sbjct:   45 KSWRWENLSVSLVHSLLSGAWAVFCVLQYPLMVHDLHSSFTPLAYLLVVISTGYFIQDAGDIIFSGHARESWEFLIHHVLVISTFMYALITSVYVAGAVIALFVEVNSVFLHLRLLLKLAGVPRDSLLYTVNKLINVATYISFRLGAQFYLSWYI 199

[Close]

BLAST of TLC domain-containing protein vs. Ensembl Cavefish
Match: TLCD1 (calfacilitin-like [Source:NCBI gene;Acc:103023685])

HSP 1 Score: 50.0618 bits (118), Expect = 1.129e-6
Identity = 39/162 (24.07%), Postives = 78/162 (48.15%), Query Frame = 2

Query:  128 VKLSECHNYLISLTHAVIT---SINCLLLIFYSEEIRNDLKASNTYAECILSFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILRWGFLTPLSFYLFKEV 604
            V+  +  N  +SL HA++T   ++ C+ L  + E + N        +  +L  S GYFL D+  ++  G     +  ++HH  VL     +L  Q +++  +  ++VE+N++ +H R L++       + Y+  N  +   +++  R      LS+YL K +
Sbjct:   46 VRCWKWRNLCVSLVHAMLTGPWAVTCVCL--WPEMLSNIHSYYTPMSYLLLCVSTGYFLQDTGDILLSGHARGSWEFLLHHFLVLWCFLYSLYTQRYVSGMVIALLVELNSVTLHARLLLKLAGAQASQLYH-TNKLLNLFTYITFRLSAQFYLSWYLLKNL 204

[Close]

BLAST of TLC domain-containing protein vs. Ensembl Sea Lamprey
Match: tlcd4b (TLC domain containing 4b [Source:NCBI gene;Acc:449652])

HSP 1 Score: 52.373 bits (124), Expect = 4.146e-8
Identity = 35/156 (22.44%), Postives = 69/156 (44.23%), Query Frame = 2

Query:  125 PVKLSECHNYLISLTHAVITSINCLLLIFYSEEIRND-LKASNTYAECILSFSFGYFLYD----SCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILRWGFLTP 577
            P K  E H+  +S  HA+I    CL ++++ + +  D +       +  ++ + GY   D     C+   IG   D+FFI +HH+S L      +   +   F+    + E++  F++ R        P+    Y +N  ++ ++F  +R   + P
Sbjct:   56 PAKQIEWHSRTVSTLHALIVGFFCLYILWFDDAVNKDPVWGDPKIVQLNIAITTGYLFSDFLLIVCNWNAIG---DKFFI-MHHLSALYAYYYVMDRGVLPYFANFRQLAELSTPFVNQRWFYEALGYPKAGGPYVVNGVLMAVAFFAVRVAVMPP 207

[Close]

BLAST of TLC domain-containing protein vs. Ensembl Sea Lamprey
Match: tlcd1 (TLC domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041010-173])

HSP 1 Score: 50.8322 bits (120), Expect = 4.889e-8
Identity = 37/131 (28.24%), Postives = 65/131 (49.62%), Query Frame = 2

Query:  203 LIFYSEEIRNDLKASNTYAECILSFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEG-KFYYCINTAMLFISFVILRWGFLTPLSFYL 592
            LIF+  E+  DL +       +L+ S GYFL D+  ++  G     +  + HH  VL     +L  + ++A +   ++VE+N++F+H R LM+      G    Y +N  +   ++VI R G    L+ Y+
Sbjct:    1 LIFF-PEVLTDLTSYTLPMNVLLAISTGYFLQDTLDIVWSGQVKASWEFLFHHALVLSCFGYSLLTRQYVAGTTVALLVEVNSVFLHARLLMKLAGANAGCSRAYRLNRYLNAFTYVIFRLGAQAYLTAYV 130

[Close]

BLAST of TLC domain-containing protein vs. Ensembl Nematostella
Match: EDO35196 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SM93])

HSP 1 Score: 53.1434 bits (126), Expect = 3.226e-8
Identity = 50/191 (26.18%), Postives = 98/191 (51.31%), Query Frame = 2

Query:  146 HNYLISLTHAVITSINCLLLIFYSEEIRNDLKASNTYAEC-ILSFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILRWGFLTPLSFYLFKEVLQ-EHVIIIVAVYPAFIGFLILNVYMSCLLMFKNELW 712
            +N  ISL H+ +T+I  L   +    + +D+    T +   +L  S GYFL+D   ++   L S    ++IHH  V++    A+  + +  +    +++E+N++F+H R++M  +DV      Y +N  ++  +FV  R  FLT  S ++   V++  H+I    V+  + GF +  + +  + +F  +LW
Sbjct:   50 YNISISLIHSTVTAIWSLYCFYNEPAMLSDMIGVWTSSSYFLLCLSTGYFLHDFLDMLLNDL-SRSTVLLIHHTLVVVAFLIAILTKNYCGYGTCSLLMEVNSVFLHSRRIMLFHDVDRKSTLYELNGLLMLATFVFFR--FLT--SAWMMNFVIKARHIIPATHVF--YGGFAMAAMIIMNIQLF-TQLW 232

[Close]

BLAST of TLC domain-containing protein vs. Ensembl Medaka
Match: tlcd2 (TLC domain containing 2 [Source:NCBI gene;Acc:101172260])

HSP 1 Score: 68.5514 bits (166), Expect = 4.752e-13
Identity = 48/189 (25.40%), Postives = 100/189 (52.91%), Query Frame = 2

Query:  140 ECHNYLISLTHAVITSINCLLLIFYSEEIRNDL-KASNTYAECILSFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILRWGFLTPLSFYLFKEVLQEHVIIIVAVYPAFIGFLI---LNVYMSCLLM 694
            +  N   S  H+ IT+I  +L  F   ++  DL +  + ++  ++SFS GYF+YD   ++     S  + ++ HHI V+     ++ +  ++ F++  ++VEIN++F+HLR+++R   +  G  Y  +N+ +   ++V+ R   L  ++ +L   VL    + ++A     +G  I   +N+ + C L+
Sbjct:   39 KWRNISTSFVHSFITAIWAVLCFFLHPQMAEDLIETFSWFSHALVSFSIGYFIYDFLDMVVHQKLSQSWELLFHHIVVITCFGLSVLSNRYLGFAVVALLVEINSVFLHLRQILRMASMASGTLYR-VNSMINLGTYVVFRINTLAWMTRWL---VLNRDKVPLLAYTLGSVGMAIMTAMNIVLFCRLL 223

[Close]

BLAST of TLC domain-containing protein vs. Ensembl Medaka
Match: tlcd1 (TLC domain containing 1 [Source:NCBI gene;Acc:101163189])

HSP 1 Score: 59.6918 bits (143), Expect = 6.740e-10
Identity = 41/152 (26.97%), Postives = 78/152 (51.32%), Query Frame = 2

Query:  140 ECHNYLISLTHAVITSINCLLLIFYSEEIRNDLKASNTYAECILS-FSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILRWGFLTPLSFYL 592
            +  N  +S+ H+V+T+   L     S E+ +++++ NT    +L   S GYF+ D+  +I  G     +  ++HH  V+      L   +FIA ++  + VE+N+I +HLR +++     +   YY +N  +  I++V  R      L++YL
Sbjct:   48 KWKNLSVSMVHSVLTAAWALTCFVVSPELLSNIRSYNTPLSYLLVCISTGYFVQDAADIILTGHAKGSWEFLLHHAVVIWCFLYTLYTHLFIAGAVIALFVEVNSITLHLRLMLKLASAQDSSLYY-VNKFVNLITYVTFRLSAQFYLTWYL 198

[Close]

BLAST of TLC domain-containing protein vs. Ensembl Medaka
Match: tlcd4b (transmembrane protein 56-B [Source:NCBI gene;Acc:101162842])

HSP 1 Score: 50.0618 bits (118), Expect = 1.019e-6
Identity = 35/150 (23.33%), Postives = 70/150 (46.67%), Query Frame = 2

Query:  125 PVKLSECHNYLISLTHAVITSINCLLLIFYSEEIR-NDLKASNTYAECILSFSFGYFLYD----SCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILR 559
            P KL+E ++ L+S  HA+I    CL ++++ + +  N +       +  ++ + GY +YD    +C+   +G   D FF V HH++ L      L+  +   F+   +I E++  F++ R        P   +    N   + + F ++R
Sbjct:   40 PPKLTEWNSRLVSTVHALIVGFFCLYILWFDDAVNANPVWGDPNLVKLNVAITCGYLVYDLVLLACNWKTMG---DGFF-VCHHLAALYAYGYVLTRGVLPYFANFRLISELSTPFVNQRWFFEALKYPRSHWMVVSNGVAMAVVFFLVR 185

[Close]

Query:  125 PVKLSECHNYLISLTHAVITSINCLLLIFYSEEIR-NDLKASNTYAECILSFSFGYFLYD----SCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILR 559
            P KL+E ++ L+S  HA+I    CL ++++ + +  N +       +  ++ + GY +YD    +C+   +G   D FF V HH++ L      L+  +   F+   +I E++  F++ R        P   +    N   + + F ++R
Sbjct:   40 PPKLTEWNSRLVSTVHALIVGFFCLYILWFDDAVNANPVWGDPNLVKLNVAITCGYLVYDLVLLACNWKTMG---DGFF-VCHHLAALYAYGYVLTRGVLPYFANFRLISELSTPFVNQRWFFEALKYPRSHWMVVSNGVAMAVVFFLVR 185

[Close]

BLAST of TLC domain-containing protein vs. Ensembl Medaka
Match: tlcd4b (transmembrane protein 56-B [Source:NCBI gene;Acc:101162842])

HSP 1 Score: 49.6766 bits (117), Expect = 1.286e-6
Identity = 35/150 (23.33%), Postives = 70/150 (46.67%), Query Frame = 2

Query:  125 PVKLSECHNYLISLTHAVITSINCLLLIFYSEEIR-NDLKASNTYAECILSFSFGYFLYD----SCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILR 559
            P KL+E ++ L+S  HA+I    CL ++++ + +  N +       +  ++ + GY +YD    +C+   +G   D FF V HH++ L      L+  +   F+   +I E++  F++ R        P   +    N   + + F ++R
Sbjct:   40 PPKLTEWNSRLVSTVHALIVGFFCLYILWFDDAVNANPVWGDPNLVKLNVAITCGYLVYDLVLLACNWKTMG---DGFF-VCHHLAALYAYGYVLTRGVLPYFANFRLISELSTPFVNQRWFFEALKYPRSHWMVVSNGVAMAVVFFLVR 185

[Close]

BLAST of TLC domain-containing protein vs. Planmine SMEST
Match: SMESG000068531.1 (SMESG000068531.1)

HSP 1 Score: 414.461 bits (1064), Expect = 3.316e-147
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 2

Query:  125 PVKLSECHNYLISLTHAVITSINCLLLIFYSEEIRNDLKASNTYAECILSFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILRWGFLTPLSFYLFKEVLQEHVIIIVAVYPAFIGFLILNVYMSCLLMFKNELWFSLNPKNWIF 742
            PVKL ECHNYLISLTHAVITSINCLLLIFYSEEIRNDLKASNTYAECILSFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILRWGFLTPLSFYLFKEVLQEHVIIIVAVYPAFIGFLILNVYMSCLLMFKNELWFSLNPKNWIF
Sbjct:   32 PVKLCECHNYLISLTHAVITSINCLLLIFYSEEIRNDLKASNTYAECILSFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILRWGFLTPLSFYLFKEVLQEHVIIIVAVYPAFIGFLILNVYMSCLLMFKNELWFSLNPKNWIF 237

[Close]

BLAST of TLC domain-containing protein vs. Planmine SMEST
Match: SMESG000060101.1 (SMESG000060101.1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.041e-15
Identity = 44/140 (31.43%), Postives = 82/140 (58.57%), Query Frame = 2

Query:  149 NYLISLTHAVITSINCLLLIFYSEEIRNDLKASNTYAEC---ILSFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILR 559
            N L SL H++++    LL  + +E+IR+DL   NTY      ++SFS GYF++D+  +IK       + +VIHH  + +    ++ +++FI +++  ++VE+N+IF+H+R+L+      +    Y IN  +   SF++ R
Sbjct:   40 NVLGSLFHSILSGTFALLCFYQNEDIRSDL--INTYTTGCLILVSFSLGYFIHDAFDMIKNSSEQQSYELVIHHSIIFVCFGISVFSRLFIGYALVALLVEVNSIFLHMRQLLGFLGFNKSDCKYRINNILNIGSFLVFR 177

[Close]

BLAST of TLC domain-containing protein vs. Planmine SMEST
Match: SMESG000060101.1 (SMESG000060101.1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.935e-15
Identity = 44/138 (31.88%), Postives = 81/138 (58.70%), Query Frame = 2

Query:  149 NYLISLTHAVITSINCLLLIFYSEEIRNDLKASNTYAECIL-SFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILR 559
            N L SL H++++    LL  + +E+IR+DL  + T    IL SFS GYF++D+  +IK       + +VIHH  + +    ++ +++FI +++  ++VE+N+IF+H+R+L+      +    Y IN  +   SF++ R
Sbjct:   55 NVLGSLFHSILSGTFALLCFYQNEDIRSDLINTYTTGCLILVSFSLGYFIHDAFDMIKNSSEQQSYELVIHHSIIFVCFGISVFSRLFIGYALVALLVEVNSIFLHMRQLLGFLGFNKSDCKYRINNILNIGSFLVFR 192

[Close]

BLAST of TLC domain-containing protein vs. Planmine SMEST
Match: SMESG000060101.1 (SMESG000060101.1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.049e-14
Identity = 44/138 (31.88%), Postives = 81/138 (58.70%), Query Frame = 2

Query:  149 NYLISLTHAVITSINCLLLIFYSEEIRNDLKASNTYAECIL-SFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVPEGKFYYCINTAMLFISFVILR 559
            N L SL H++++    LL  + +E+IR+DL  + T    IL SFS GYF++D+  +IK       + +VIHH  + +    ++ +++FI +++  ++VE+N+IF+H+R+L+      +    Y IN  +   SF++ R
Sbjct:   51 NVLGSLFHSILSGTFALLCFYQNEDIRSDLINTYTTGCLILVSFSLGYFIHDAFDMIKNSSEQQSYELVIHHSIIFVCFGISVFSRLFIGYALVALLVEVNSIFLHMRQLLGFLGFNKSDCKYRINNILNIGSFLVFR 188

[Close]

BLAST of TLC domain-containing protein vs. Planmine SMEST
Match: SMESG000026799.1 (SMESG000026799.1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.159e-11
Identity = 46/153 (30.07%), Postives = 80/153 (52.29%), Query Frame = 2

Query:  149 NYLISLTHAVITSINCLLLIFYSEEIRNDL-KASNTYAECILSFSFGYFLYDSCSLIKIGLRSDRFFIVIHHISVLLTLTAALSNQIFIAFSIHCMIVEINNIFMHLRKLMRCYDVP-EGKFYYCINTAMLFISFVILRWGFLTPLSFYLFKE 601
            N L+S  HA+I     LL  +Y  E+ +DL    N++   ++ FS GYFLYD   +I        + + +HH++V+ T    L     + +++  ++ E+N+ F+H RKL++ Y VP     Y C+    L I+F I R   L  +++ ++ E
Sbjct:   37 NLLMSWVHALIVGSWDLLCFYYYPELTDDLVDFKNSFCYYLIVFSTGYFLYDFADMIYNKKVLKMWELTLHHLAVISTFLYNLCTMTCVGYNVVALLCEVNSFFLHSRKLLQLYHVPFRHVGYRCVAVVNL-ITFAIFRGIALVTITYGMYVE 188

The following BLAST results are available for this feature:

BLAST of TLC domain-containing protein vs. Ensembl Human
BLAST of TLC domain-containing protein vs. Ensembl Celegans
BLAST of TLC domain-containing protein vs. Ensembl Fly
BLAST of TLC domain-containing protein vs. Ensembl Zebrafish
BLAST of TLC domain-containing protein vs. Ensembl Xenopus
BLAST of TLC domain-containing protein vs. Ensembl Mouse
BLAST of TLC domain-containing protein vs. UniProt/SwissProt
BLAST of TLC domain-containing protein vs. TrEMBL
BLAST of TLC domain-containing protein vs. Ensembl Cavefish
BLAST of TLC domain-containing protein vs. Ensembl Sea Lamprey
BLAST of TLC domain-containing protein vs. Ensembl Yeast
BLAST of TLC domain-containing protein vs. Ensembl Nematostella
BLAST of TLC domain-containing protein vs. Ensembl Medaka
BLAST of TLC domain-containing protein vs. Planmine SMEST

BLAST of TLC domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 1


Match Name	E-value	Identity	Description
TLCD1	8.457e-10	21.68	TLC domain containing 1 [Source:HGNC Symbol;Acc:HG...	[more]

BLAST of TLC domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3


Match Name	E-value	Identity	Description
Y48G8AL.13	3.529e-6	28.83	pep chromosome:WBcel235:I:1223959:1227858:-1 gene:...	[more]
Y48G8AL.13	3.529e-6	28.83	pep chromosome:WBcel235:I:1223959:1229282:-1 gene:...	[more]
Y48G8AL.13	3.529e-6	28.83	pep chromosome:WBcel235:I:1223957:1226812:-1 gene:...	[more]

BLAST of TLC domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of TLC domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 4


Match Name	E-value	Identity	Description
tlcd1	1.647e-9	23.87	TLC domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-...	[more]
tlcd2	5.111e-9	22.34	TLC domain containing 2 [Source:NCBI gene;Acc:5594...	[more]
tlcd4b	6.175e-6	23.08	TLC domain containing 4b [Source:NCBI gene;Acc:449...	[more]
tlcd4b	6.175e-6	23.08	TLC domain containing 4b [Source:NCBI gene;Acc:449...	[more]

BLAST of TLC domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1


Match Name	E-value	Identity	Description
TLCD2	9.262e-9	23.62	TLC domain containing 2 [Source:NCBI gene;Acc:1004...	[more]

BLAST of TLC domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2


Match Name	E-value	Identity	Description
Tlcd1	3.914e-10	24.17	TLC domain containing 1 [Source:MGI Symbol;Acc:MGI...	[more]
Tlcd1	4.461e-10	24.17	TLC domain containing 1 [Source:MGI Symbol;Acc:MGI...	[more]

BLAST of TLC domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q99JT6\|TLCD1_MOUSE	3.120e-9	24.17	TLC domain-containing protein 1 OS=Mus musculus OX...	[more]
sp\|Q96CP7\|TLCD1_HUMAN	4.061e-9	21.68	TLC domain-containing protein 1 OS=Homo sapiens OX...	[more]
sp\|Q5U2T1\|TLCD1_RAT	4.420e-9	24.59	TLC domain-containing protein 1 OS=Rattus norvegic...	[more]
sp\|A8WGS4\|TLCD2_DANRE	3.858e-8	22.34	TLC domain-containing protein 2 OS=Danio rerio OX=...	[more]
sp\|F1NZP5\|TLCD1_CHICK	7.136e-7	23.94	TLC domain-containing protein 1 OS=Gallus gallus O...	[more]

BLAST of TLC domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0A9WGL4	1.458e-15	31.91	TLC domain-containing protein 2 OS=Lygus hesperus ...	[more]
A0A146KZI6	1.852e-15	31.91	TLC domain-containing protein 2 OS=Lygus hesperus ...	[more]
A0A0A9VU59	4.881e-15	31.21	TLC domain-containing protein 2 OS=Lygus hesperus ...	[more]
E4YBW1	1.200e-12	29.93	TLC domain-containing protein OS=Oikopleura dioica...	[more]
E4WSD7	1.468e-12	29.93	TLC domain-containing protein OS=Oikopleura dioica...	[more]

BLAST of TLC domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3


Match Name	E-value	Identity	Description
tlcd2	5.807e-12	24.47	TLC domain-containing protein 2 [Source:NCBI gene;...	[more]
tlcd1	7.589e-8	27.10	TLC domain containing 1 [Source:NCBI gene;Acc:1030...	[more]
TLCD1	1.129e-6	24.07	calfacilitin-like [Source:NCBI gene;Acc:103023685]	[more]

BLAST of TLC domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2


Match Name	E-value	Identity	Description
tlcd4b	4.146e-8	22.44	TLC domain containing 4b [Source:NCBI gene;Acc:449...	[more]
tlcd1	4.889e-8	28.24	TLC domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-...	[more]

BLAST of TLC domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of TLC domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO35196	3.226e-8	26.18	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of TLC domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
tlcd2	4.752e-13	25.40	TLC domain containing 2 [Source:NCBI gene;Acc:1011...	[more]
tlcd1	6.740e-10	26.97	TLC domain containing 1 [Source:NCBI gene;Acc:1011...	[more]
tlcd4b	1.019e-6	23.33	transmembrane protein 56-B [Source:NCBI gene;Acc:1...	[more]
tlcd4b	1.019e-6	23.33	transmembrane protein 56-B [Source:NCBI gene;Acc:1...	[more]
tlcd4b	1.286e-6	23.33	transmembrane protein 56-B [Source:NCBI gene;Acc:1...	[more]

BLAST of TLC domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000068531.1	3.316e-147	99.51	SMESG000068531.1	[more]
SMESG000060101.1	8.041e-15	31.43	SMESG000060101.1	[more]
SMESG000060101.1	9.935e-15	31.88	SMESG000060101.1	[more]
SMESG000060101.1	1.049e-14	31.88	SMESG000060101.1	[more]
SMESG000026799.1	1.159e-11	30.07	SMESG000026799.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence

transcript sequence

>SMED30017888 ID=SMED30017888|Name=TLC domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=987bp
AGTATAAATATTTTTTTATTTTACTTTTTTAATGCTGCTGTTAATTGTTA
TATTTTCCAGTTTTTTATTTTTTCTTAGTTATTCTTTTTTACTTAAAAAA
AATTTTAAATCATCTTCTCTTAGTCCTGTAAAATTATCTGAATGTCACAA
TTACTTGATATCATTGACTCATGCTGTAATTACTTCAATTAATTGCTTAT
TACTAATTTTTTATTCAGAGGAAATTCGCAATGACTTAAAAGCGTCGAAT
ACTTACGCTGAATGTATTTTATCATTTTCATTCGGTTATTTTTTATATGA
CTCGTGTTCTTTAATCAAAATTGGATTAAGATCTGATAGATTTTTTATTG
TAATTCATCATATTTCTGTTTTATTGACTTTAACAGCAGCACTGAGTAAT
CAAATTTTTATTGCTTTTTCAATACATTGTATGATTGTTGAAATAAACAA
TATTTTCATGCACTTGAGAAAACTTATGAGATGCTATGATGTCCCCGAAG
GGAAATTCTATTATTGCATTAATACGGCAATGTTGTTTATTTCATTTGTC
ATTCTGCGGTGGGGTTTTTTAACTCCTTTGTCATTTTATTTATTCAAAGA
AGTACTACAAGAACATGTCATTATTATAGTCGCTGTTTATCCAGCTTTTA
TTGGTTTTCTGATTCTTAATGTATACATGTCTTGTCTTTTAATGTTCAAA
AACGAATTGTGGTTTTCTTTAAATCCGAAAAATTGGATATTTTAGAAAAG
TATAGAAATGAAATTAATAAGTGTGATTGGGTAGACCTATTTAAAGTATT
GAAAAAAAAATTTTTTTTAATAGTTTTTTTAATTGTATTTTGTACTGTGG
TTTTTAAGAGATGTTATGACATTTTGTATAGCATGTTCGCTAAAGCTTAA
TGTTCTATGTGATATTTTTGTAAGTACTTTGATATTTTTACTGTGTTTCT
TTGCTCAGCTGAATTTATTTGCCGATGTCTTTTAGAA

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000016	pharynx
PLANA:0000018	Category 4 cell
PLANA:0000418	head
PLANA:0002032	epidermal cell

Vocabulary: **INTERPRO**
Term	Definition
IPR006634	TLC-dom

Vocabulary: **cellular component**
Term	Definition
GO:0016021	integral component of membrane
GO:0016020	membrane

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	TMHMM	TMhelix		coord: 4..25

Main menu

TLC domain-containing protein

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 5

Owlery

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