Baculoviral IAP repeat containing 2

Overview
NameBaculoviral IAP repeat containing 2
Smed IDSMED30017806
Length (bp)4990
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Baculoviral IAP repeat containing 2 (SMED30017806) t-SNE clustered cells

Violin plots show distribution of expression levels for Baculoviral IAP repeat containing 2 (SMED30017806) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Baculoviral IAP repeat containing 2 (SMED30017806) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Baculoviral IAP repeat containing 2 (SMED30017806) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30017806

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
epidermisSMED30017806 dd_Smed_v4_25195_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30017806 dd_Smed_v4_35044_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30017806 dd_Smed_v4_35044_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30017806 dd_Smed_v4_53200_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30017806 dd_Smed_v4_46086_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30017806 dd_Smed_v4_46086_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033])

HSP 1 Score: 60.8474 bits (146), Expect = 1.646e-8
Identity = 30/85 (35.29%), Postives = 43/85 (50.59%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNKT-----------------FKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKI 206
            FF I +G++D LL WP K K                  FK D  +  + +PT E N+A+G   F+ Q +L    Y+KDD I+IK+
Sbjct:  391 FFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKV 475
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033])

HSP 1 Score: 60.8474 bits (146), Expect = 1.860e-8
Identity = 30/85 (35.29%), Postives = 43/85 (50.59%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNKT-----------------FKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKI 206
            FF I +G++D LL WP K K                  FK D  +  + +PT E N+A+G   F+ Q +L    Y+KDD I+IK+
Sbjct:  449 FFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKV 533
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033])

HSP 1 Score: 60.8474 bits (146), Expect = 1.860e-8
Identity = 30/85 (35.29%), Postives = 43/85 (50.59%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNKT-----------------FKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKI 206
            FF I +G++D LL WP K K                  FK D  +  + +PT E N+A+G   F+ Q +L    Y+KDD I+IK+
Sbjct:  449 FFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKV 533
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033])

HSP 1 Score: 60.8474 bits (146), Expect = 1.995e-8
Identity = 30/85 (35.29%), Postives = 43/85 (50.59%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNKT-----------------FKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKI 206
            FF I +G++D LL WP K K                  FK D  +  + +PT E N+A+G   F+ Q +L    Y+KDD I+IK+
Sbjct:  474 FFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKV 558
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033])

HSP 1 Score: 60.8474 bits (146), Expect = 1.995e-8
Identity = 30/85 (35.29%), Postives = 43/85 (50.59%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNKT-----------------FKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKI 206
            FF I +G++D LL WP K K                  FK D  +  + +PT E N+A+G   F+ Q +L    Y+KDD I+IK+
Sbjct:  474 FFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKV 558
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Zebrafish
Match: traf3 (TNF receptor-associated factor 3 [Source:ZFIN;Acc:ZDB-GENE-040801-257])

HSP 1 Score: 62.003 bits (149), Expect = 5.243e-9
Identity = 29/87 (33.33%), Postives = 45/87 (51.72%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNKT-----------------FKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKINL 212
            FF + +G++D LL+WP K K                  FK D  +  + +PT E N+A+G   F+ Q +L    Y+KDD I+IK+ +
Sbjct:  479 FFVVMRGEYDALLQWPFKQKVTLMLMDQGPARKHLGDAFKPDPSSSSFRRPTGEMNIASGCPLFVAQTVLENGTYIKDDTIFIKVTV 565
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Zebrafish
Match: traf1 (TNF receptor-associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-071120-4])

HSP 1 Score: 51.2174 bits (121), Expect = 9.863e-6
Identity = 30/85 (35.29%), Postives = 43/85 (50.59%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNKT----------------FKSDQRNPCYIQPTTEENLAAGARAFLQQEILR--QAAYVKDDNIYIK 203
            FF I KG++D +L WP K+K                 F+ D  +  + QP ++ N+A+G   F   + LR  + AY KDD IYIK
Sbjct:  460 FFVIMKGEYDPILSWPFKHKVTFFLLDQNQREHVIDAFRPDLSSMSFHQPVSDMNVASGCPLFFPLKKLRSPKHAYCKDDTIYIK 544
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Xenopus
Match: ssh2 (slingshot protein phosphatase 2 [Source:Xenbase;Acc:XB-GENE-993093])

HSP 1 Score: 60.4622 bits (145), Expect = 2.103e-8
Identity = 30/85 (35.29%), Postives = 43/85 (50.59%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNKT-----------------FKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKI 206
            FF I +G++D LL WP K K                  FK D  +  + +PT E N+A+G   F+ Q +L    Y+KDD I+IK+
Sbjct:  442 FFVIMRGEYDALLPWPFKQKVSLMLMDQGPSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKV 526
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Xenopus
Match: ssh2 (slingshot protein phosphatase 2 [Source:Xenbase;Acc:XB-GENE-993093])

HSP 1 Score: 60.4622 bits (145), Expect = 2.126e-8
Identity = 30/85 (35.29%), Postives = 43/85 (50.59%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNKT-----------------FKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKI 206
            FF I +G++D LL WP K K                  FK D  +  + +PT E N+A+G   F+ Q +L    Y+KDD I+IK+
Sbjct:  467 FFVIMRGEYDALLPWPFKQKVSLMLMDQGPSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKV 551
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Mouse
Match: Traf3 (TNF receptor-associated factor 3 [Source:MGI Symbol;Acc:MGI:108041])

HSP 1 Score: 60.4622 bits (145), Expect = 1.488e-8
Identity = 30/85 (35.29%), Postives = 43/85 (50.59%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNKT-----------------FKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKI 206
            FF I +G++D LL WP K K                  FK D  +  + +PT E N+A+G   F+ Q +L    Y+KDD I+IK+
Sbjct:  448 FFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKV 532
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Mouse
Match: Traf3 (TNF receptor-associated factor 3 [Source:MGI Symbol;Acc:MGI:108041])

HSP 1 Score: 60.4622 bits (145), Expect = 1.488e-8
Identity = 30/85 (35.29%), Postives = 43/85 (50.59%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNKT-----------------FKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKI 206
            FF I +G++D LL WP K K                  FK D  +  + +PT E N+A+G   F+ Q +L    Y+KDD I+IK+
Sbjct:  448 FFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKV 532
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Mouse
Match: Traf3 (TNF receptor-associated factor 3 [Source:MGI Symbol;Acc:MGI:108041])

HSP 1 Score: 60.4622 bits (145), Expect = 1.624e-8
Identity = 30/85 (35.29%), Postives = 43/85 (50.59%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNKT-----------------FKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKI 206
            FF I +G++D LL WP K K                  FK D  +  + +PT E N+A+G   F+ Q +L    Y+KDD I+IK+
Sbjct:  473 FFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKV 557
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Mouse
Match: Traf5 (TNF receptor-associated factor 5 [Source:MGI Symbol;Acc:MGI:107548])

HSP 1 Score: 51.2174 bits (121), Expect = 3.973e-6
Identity = 24/87 (27.59%), Postives = 44/87 (50.57%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQA--AYVKDDNIYIKI 206
            +F + +G+FD LL+WP + +                 TFK+D  +  + +P  E N+A+G   F+    L  +   Y+KDD +++K+
Sbjct:  154 YFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKV 240
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Mouse
Match: Traf5 (TNF receptor-associated factor 5 [Source:MGI Symbol;Acc:MGI:107548])

HSP 1 Score: 51.2174 bits (121), Expect = 3.973e-6
Identity = 24/87 (27.59%), Postives = 44/87 (50.57%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQA--AYVKDDNIYIKI 206
            +F + +G+FD LL+WP + +                 TFK+D  +  + +P  E N+A+G   F+    L  +   Y+KDD +++K+
Sbjct:  154 YFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKV 240
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. UniProt/SwissProt
Match: sp|Q13114|TRAF3_HUMAN (TNF receptor-associated factor 3 OS=Homo sapiens OX=9606 GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 9.582e-8
Identity = 30/85 (35.29%), Postives = 43/85 (50.59%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNKT-----------------FKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKI 206
            FF I +G++D LL WP K K                  FK D  +  + +PT E N+A+G   F+ Q +L    Y+KDD I+IK+
Sbjct:  474 FFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKV 558
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. UniProt/SwissProt
Match: sp|Q60803|TRAF3_MOUSE (TNF receptor-associated factor 3 OS=Mus musculus OX=10090 GN=Traf3 PE=1 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 1.136e-7
Identity = 30/85 (35.29%), Postives = 43/85 (50.59%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNKT-----------------FKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKI 206
            FF I +G++D LL WP K K                  FK D  +  + +PT E N+A+G   F+ Q +L    Y+KDD I+IK+
Sbjct:  473 FFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKV 557
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. TrEMBL
Match: A0A3Q3A2F5 (MATH domain-containing protein OS=Kryptolebias marmoratus OX=37003 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.789e-8
Identity = 32/94 (34.04%), Postives = 49/94 (52.13%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNKT-----------FKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKIN------LIKESINP 233
            FF + +G++D LL WP K KT           FK D  +  + +P  E N+A+G   F+ Q +L   +Y+KDD I+IK+       L++   NP
Sbjct:   55 FFVVMRGEYDALLPWPFKQKTQTFTLKHLGDAFKPDPNSSSFRRPVAEMNIASGCPLFVSQSVLETGSYIKDDTIFIKVGGPSPSFLLQNKTNP 148
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. TrEMBL
Match: H2YYB2 (MATH domain-containing protein OS=Ciona savignyi OX=51511 PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 8.547e-8
Identity = 28/87 (32.18%), Postives = 49/87 (56.32%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKINL 212
            FF + KG++D LL WP + K                 TF+ D  +  + QPT++ N+A+G   F+   +++ ++YVK+D IYI+I++
Sbjct:   64 FFVVMKGEYDALLPWPFRQKVTLMLLDQGVDRRHLSDTFRPDPTSSSFKQPTSDMNIASGCPLFVAHSVIKGSSYVKEDTIYIRIHV 150
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. TrEMBL
Match: A0A3B1IJ18 (TNF receptor associated factor 3 OS=Astyanax mexicanus OX=7994 GN=TRAF3 PE=4 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 5.234e-7
Identity = 29/87 (33.33%), Postives = 44/87 (50.57%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNKT-----------------FKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKINL 212
            FF + +G++D LL WP K K                  FK D  +  + +PT E N+A+G   F+ Q +L    Y+KDD I+IK+ +
Sbjct:   62 FFVVMRGEYDALLPWPFKQKVTLMLMDQGPARKHLGDAFKPDPNSSSFRRPTGEMNIASGCPLFVAQTVLENGTYIKDDTIFIKVTV 148
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. TrEMBL
Match: H2YBM2 (MATH domain-containing protein OS=Ciona savignyi OX=51511 PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 8.490e-7
Identity = 26/87 (29.89%), Postives = 49/87 (56.32%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKINL 212
            FF + KG++D LL WP + K                 TF+ D  +  + QPT++ N+A+G   F+   +++ ++YVK+D I+++I++
Sbjct:   57 FFVVMKGEYDALLPWPFRQKVTLMLLDQGMDRRHLSDTFRPDPTSSSFKQPTSDMNIASGCPLFVAHNVIKGSSYVKEDTIFLRIHV 143
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. TrEMBL
Match: H2YBM3 (MATH domain-containing protein OS=Ciona savignyi OX=51511 PE=4 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.320e-6
Identity = 27/93 (29.03%), Postives = 50/93 (53.76%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKINLIKESIN 230
            FF + KG++D LL WP + K                 TFK D  +  + +PT++ N+A+G   F+   ++  ++YVK+D I+++I++    I+
Sbjct:   64 FFVVMKGEYDALLPWPFRQKVTLMLLDQGMDQRHLSDTFKPDPTSSSFKKPTSDMNIASGCPLFVAHNVIEGSSYVKEDTIFLRIHVDTSGID 156
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Cavefish
Match: ENSAMXT00000035169.1 (pep primary_assembly:Astyanax_mexicanus-2.0:9:3354744:3362219:1 gene:ENSAMXG00000029095.1 transcript:ENSAMXT00000035169.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 62.003 bits (149), Expect = 1.983e-10
Identity = 29/87 (33.33%), Postives = 44/87 (50.57%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNKT-----------------FKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKINL 212
            FF + +G++D LL WP K K                  FK D  +  + +PT E N+A+G   F+ Q +L    Y+KDD I+IK+ +
Sbjct:   62 FFVVMRGEYDALLPWPFKQKVTLMLMDQGPARKHLGDAFKPDPNSSSFRRPTGEMNIASGCPLFVAQTVLENGTYIKDDTIFIKVTV 148
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Cavefish
Match: traf1 (TNF receptor-associated factor 1-like [Source:NCBI gene;Acc:103045252])

HSP 1 Score: 55.0694 bits (131), Expect = 5.181e-7
Identity = 32/85 (37.65%), Postives = 43/85 (50.59%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNKT----------------FKSDQRNPCYIQPTTEENLAAGARAFLQQEILR--QAAYVKDDNIYIK 203
            FF I KGD+D LL WP K K                 F+ D R+  + +P +E N+A+G   F     LR  + AYVKDD ++IK
Sbjct:  427 FFVIMKGDYDPLLSWPFKQKVTFFLIDQNQREHVVDAFRPDLRSASFQRPVSEMNVASGCPLFFPLSKLRSPKHAYVKDDTLFIK 511
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Cavefish
Match: traf1 (TNF receptor-associated factor 1-like [Source:NCBI gene;Acc:103045252])

HSP 1 Score: 55.0694 bits (131), Expect = 6.506e-7
Identity = 32/85 (37.65%), Postives = 43/85 (50.59%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNKT----------------FKSDQRNPCYIQPTTEENLAAGARAFLQQEILR--QAAYVKDDNIYIK 203
            FF I KGD+D LL WP K K                 F+ D R+  + +P +E N+A+G   F     LR  + AYVKDD ++IK
Sbjct:  450 FFVIMKGDYDPLLSWPFKQKVTFFLIDQNQREHVVDAFRPDLRSASFQRPVSEMNVASGCPLFFPLSKLRSPKHAYVKDDTLFIK 534
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000074.1 (pep scaffold:Pmarinus_7.0:GL482142:165593:173010:-1 gene:ENSPMAG00000000066.1 transcript:ENSPMAT00000000074.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 55.8398 bits (133), Expect = 5.625e-8
Identity = 26/85 (30.59%), Postives = 45/85 (52.94%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNK-----------------TFKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKI 206
            FF + +G++D LL WP + +                 TFK D  +  + +PT++ N+A+G   F+    L  A+Y++DD I+IK+
Sbjct:  383 FFVVMRGEYDALLPWPFRQRVTLTLLDQGAARRQLSDTFKPDPASSSFRRPTSDMNIASGCPLFVSHVALESASYLQDDTIFIKV 467
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Nematostella
Match: EDO49464 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RG36])

HSP 1 Score: 57.7658 bits (138), Expect = 3.291e-8
Identity = 29/94 (30.85%), Postives = 48/94 (51.06%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNK----------------TFKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKINLIKESINPL 236
            FF + +G+FD LL WP + K                TF+ D  +  + +PT+  N+A+G   F+    L+  AYV+DD ++IKI +    + P+
Sbjct:  436 FFVLMRGEFDALLPWPFRQKVTFKLLDQDRVHDIGDTFRPDPTSSSFKRPTSNMNIASGCPLFISHTNLQTRAYVRDDTMFIKIAVDTTGLPPM 529
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Nematostella
Match: EDO38873 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SBN4])

HSP 1 Score: 56.225 bits (134), Expect = 7.623e-8
Identity = 28/84 (33.33%), Postives = 42/84 (50.00%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNKT----------------FKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKI 206
            FF I +G+FD LL WP + K                 F+ D  +  + +P  E N+A+G   F   E L Q AY++DD +++KI
Sbjct:  391 FFVIMRGEFDALLRWPFRQKVTLMLLDQDNVEHVIDAFRPDPSSSSFQRPRAEMNIASGCPLFCSHEQLTQHAYIRDDTMFLKI 474
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Nematostella
Match: EDO49545 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RGK7])

HSP 1 Score: 50.8322 bits (120), Expect = 3.050e-6
Identity = 32/88 (36.36%), Postives = 45/88 (51.14%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNK-TF----KSDQRNP----------------CYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIK 203
            +  I KGD+D LLEWP K K TF    +S+++N                  + +PT +ENL  G   F+  E+L    YVKDD ++IK
Sbjct:  312 YIIIMKGDYDALLEWPFKQKITFYLIDQSEKQNHRTHLLSPNRSLPNIKVVFNRPTVKENLGIGNPCFVPNEVLESGEYVKDDVMFIK 399
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Medaka
Match: traf3 (TNF receptor associated factor 3 [Source:NCBI gene;Acc:101161601])

HSP 1 Score: 60.4622 bits (145), Expect = 1.052e-8
Identity = 28/87 (32.18%), Postives = 43/87 (49.43%), Query Frame = 3 
Query:    3 FFQICKGDFDELLEWPLKNKT-----------------FKSDQRNPCYIQPTTEENLAAGARAFLQQEILRQAAYVKDDNIYIKINL 212
            FF + +G++D LL WP K K                  FK D  +  + +P  E N+A+G   F+ Q +L    Y+KDD I+IK+ +
Sbjct:  356 FFVVMRGEYDALLPWPFKQKVTLMLMDQGPSRKHLGDAFKPDPSSSSFRRPVAEMNIASGCPLFVSQSVLESGTYIKDDTIFIKVTV 442
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Planmine SMEST
Match: SMESG000044524.1 (SMESG000044524.1)

HSP 1 Score: 313.538 bits (802), Expect = 2.673e-123
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 
Query: 2941 TTKKRQMEQDEENFIKHLSHEVKGYEHECARLKRQVDGEIYKTERLQQQLTEALQDANGFRGMCNQKDINLEHQRLVMENSTKEHEKVAQQMQQEMELLKNCYEENKRNLKRKIERLQTYERTIALEAEVEKLTENSDYLTYLLEEEIQASAEARE 3408
            TTKKRQMEQDEENFIKHLSHEVKGYEHECARLKRQVDGEIYKTERLQQQLTEALQDANGFRGMCNQKDINLEHQRLVMENSTKEHEKVAQQMQQEMELLKNCYEENKRNLKRKIERLQTYERTIALEAEVEKLTENSDYLTYLLEEEIQASAEARE
Sbjct:  618 TTKKRQMEQDEENFIKHLSHEVKGYEHECARLKRQVDGEIYKTERLQQQLTEALQDANGFRGMCNQKDINLEHQRLVMENSTKEHEKVAQQMQQEMELLKNCYEENKRNLKRKIERLQTYERTIALEAEVEKLTENSDYLTYLLEEEIQASAEARE 773

HSP 2 Score: 150.984 bits (380), Expect = 2.673e-123
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 3 
Query: 2574 INLIKKKRESHKPSGENQNKILNQVKEQARKWXXXXXXXXXXXXXXXXXXXRDNSLFIAKVDERQERIEELEKSHEKIEKKTIGHVSKPVNGRKSGET 2867
            INLIKKKRESHKPSGENQNKILNQVKEQARKWKLKYKEEVEIVKLVKEEKERDNSLFIAKVDERQERIEELEKSHEKIEKKTIGHVSKPVNGRKSGET
Sbjct:  520 INLIKKKRESHKPSGENQNKILNQVKEQARKWKLKYKEEVEIVKLVKEEKERDNSLFIAKVDERQERIEELEKSHEKIEKKTIGHVSKPVNGRKSGET 617
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Planmine SMEST
Match: SMESG000071705.1 (SMESG000071705.1)

HSP 1 Score: 247.669 bits (631), Expect = 1.794e-74
Identity = 123/145 (84.83%), Postives = 130/145 (89.66%), Query Frame = 1 
Query: 3082 QQLTEALQDANGFRGMCNQKDINLEHQRLVMENSTKEHEKVAQQMQQEMELLKNCYEENKRNLKRKIERLQTYERTIALEAEVEKLTENSDYLTYLLEEEIQASAEARE*TNRLRNRPHMVLLPFYPILPTRKDEGNIKQDETWV 3516
            QQL EALQD NGFRGMCNQKDI LEHQRLVMENS KE+EKVAQQ QQEM+LLKNCYEEN+RNLKR+IERLQTYE  I L+AEVEKLTENSDYLTYLLEEE+QAS EARE T R+RNRP MVLL FYPILPTR DEGNIKQ ETWV
Sbjct:   77 QQLAEALQDPNGFRGMCNQKDIKLEHQRLVMENSIKEYEKVAQQTQQEMKLLKNCYEENERNLKREIERLQTYEGNIKLKAEVEKLTENSDYLTYLLEEEMQASVEAREETYRIRNRPSMVLLHFYPILPTRNDEGNIKQGETWV 221
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Planmine SMEST
Match: SMESG000071705.1 (SMESG000071705.1)

HSP 1 Score: 231.876 bits (590), Expect = 3.189e-68
Identity = 117/143 (81.82%), Postives = 126/143 (88.11%), Query Frame = 1 
Query: 3082 QQLTEALQDANGFRGMCNQKDINLEHQRLVMENSTKEHEKVAQQMQQEMELLKNCYEENKRNLKRKIERLQTYERTIALEAEVEKLTENSDYLTYLLEEEIQASAEARE*TNRLRNRPHMVLLPFYPILPTRKDEGNIKQDET 3510
            QQL EALQD NGFRGMCNQKDI LEHQRLVMENS KE+EKVAQQ QQEM+LLKNCYEEN+RNLKR+IERLQTYE  I L+AEVEKLTENSDYLTYLLEEE+QAS EARE T R+RNRP MVLL FYPILPTR DE   +QDE+
Sbjct:   77 QQLAEALQDPNGFRGMCNQKDIKLEHQRLVMENSIKEYEKVAQQTQQEMKLLKNCYEENERNLKREIERLQTYEGNIKLKAEVEKLTENSDYLTYLLEEEMQASVEAREETYRIRNRPSMVLLHFYPILPTRNDEA--QQDES 217

HSP 2 Score: 58.9214 bits (141), Expect = 8.509e-9
Identity = 36/65 (55.38%), Postives = 42/65 (64.62%), Query Frame = 2 
Query: 4307 ARQDKATALLKTIMEQETKAELLKAIE------EHLESKQNIKSTS--TNRIMDDENNPSKGVHF 4477
            A+QD++ ALL+TIMEQE K E L AIE      E LESK++ KS S    R  DDENNPSK   F
Sbjct:  212 AQQDESMALLRTIMEQENKIEPLDAIEDTQMKDERLESKESTKSASKLKGRTFDDENNPSKESAF 276
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Planmine SMEST
Match: SMESG000044525.1 (SMESG000044525.1)

HSP 1 Score: 220.705 bits (561), Expect = 8.667e-67
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 3 
Query: 1035 MQGFQSNDKRNLKCVKCKIKYQFTKETPPTLEHLEDCVFNLTLTEKAQKPLSKDEIRIIIKQPEINETTIITGYHNRFTKTILRKNQYESIFELIKATQQYAERHHD 1355
            MQGFQSNDKRNLKCVKCKIKYQFTKETPPTLEHLEDCVFNLTLTEKAQKPLSKDEIRIIIKQPEINETTIITGYHNRFTKTILRKNQYESIFELIKATQQYAERHHD
Sbjct:    1 MQGFQSNDKRNLKCVKCKIKYQFTKETPPTLEHLEDCVFNLTLTEKAQKPLSKDEIRIIIKQPEINETTIITGYHNRFTKTILRKNQYESIFELIKATQQYAERHHD 107
[Close]
BLAST of Baculoviral IAP repeat containing 2 vs. Planmine SMEST
Match: SMESG000002520.1 (SMESG000002520.1)

HSP 1 Score: 209.149 bits (531), Expect = 1.831e-61
Identity = 102/121 (84.30%), Postives = 110/121 (90.91%), Query Frame = 1 
Query: 3127 MCNQKDINLEHQRLVMENSTKEHEKVAQQMQQEMELLKNCYEENKRNLKRKIERLQTYERTIALEAEVEKLTENSDYLTYLLEEEIQASAEARE*TNRLRNRPHMVLLPFYPILPTRKDEG 3489
            MCNQKDINLEHQR++MENSTKEH K+ QQ+QQEMELLKNCYEEN+RNLKR+IERLQTYERT+ L+AEVEKLTENSDYL YLLEEEIQASAEARE TNRL NRP MVLL FYPI PTR DE 
Sbjct:    1 MCNQKDINLEHQRIIMENSTKEHAKITQQLQQEMELLKNCYEENERNLKREIERLQTYERTVELKAEVEKLTENSDYLAYLLEEEIQASAEAREETNRLLNRPPMVLLSFYPIPPTRNDED 121

HSP 2 Score: 75.8702 bits (185), Expect = 5.049e-15
Identity = 44/74 (59.46%), Postives = 53/74 (71.62%), Query Frame = 2 
Query: 4274 KNLQKQFMIILARQDKATALLKTIMEQETKAELLKAIE------EHLESKQNIKSTSTNRIMDDENNPSKGVHF 4477
            ++LQ Q MI LARQD+ATA+L TIME+E KAE L+ +E      EHLES + IKSTS NR +DDENNPS    F
Sbjct:  120 EDLQNQLMITLARQDEATAVL-TIMEREIKAEPLEVLEDTPIKDEHLESVEKIKSTSKNRTVDDENNPSIKSAF 192
The following BLAST results are available for this feature:
BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
TRAF31.646e-835.29TNF receptor associated factor 3 [Source:HGNC Symb... [more]
TRAF31.860e-835.29TNF receptor associated factor 3 [Source:HGNC Symb... [more]
TRAF31.860e-835.29TNF receptor associated factor 3 [Source:HGNC Symb... [more]
TRAF31.995e-835.29TNF receptor associated factor 3 [Source:HGNC Symb... [more]
TRAF31.995e-835.29TNF receptor associated factor 3 [Source:HGNC Symb... [more]
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BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
traf35.243e-933.33TNF receptor-associated factor 3 [Source:ZFIN;Acc:... [more]
traf19.863e-635.29TNF receptor-associated factor 1 [Source:ZFIN;Acc:... [more]
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BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ssh22.103e-835.29slingshot protein phosphatase 2 [Source:Xenbase;Ac... [more]
ssh22.126e-835.29slingshot protein phosphatase 2 [Source:Xenbase;Ac... [more]
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BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Traf31.488e-835.29TNF receptor-associated factor 3 [Source:MGI Symbo... [more]
Traf31.488e-835.29TNF receptor-associated factor 3 [Source:MGI Symbo... [more]
Traf31.624e-835.29TNF receptor-associated factor 3 [Source:MGI Symbo... [more]
Traf53.973e-627.59TNF receptor-associated factor 5 [Source:MGI Symbo... [more]
Traf53.973e-627.59TNF receptor-associated factor 5 [Source:MGI Symbo... [more]
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BLAST of Baculoviral IAP repeat containing 2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 2
Match NameE-valueIdentityDescription
sp|Q13114|TRAF3_HUMAN9.582e-835.29TNF receptor-associated factor 3 OS=Homo sapiens O... [more]
sp|Q60803|TRAF3_MOUSE1.136e-735.29TNF receptor-associated factor 3 OS=Mus musculus O... [more]
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BLAST of Baculoviral IAP repeat containing 2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3Q3A2F51.789e-834.04MATH domain-containing protein OS=Kryptolebias mar... [more]
H2YYB28.547e-832.18MATH domain-containing protein OS=Ciona savignyi O... [more]
A0A3B1IJ185.234e-733.33TNF receptor associated factor 3 OS=Astyanax mexic... [more]
H2YBM28.490e-729.89MATH domain-containing protein OS=Ciona savignyi O... [more]
H2YBM31.320e-629.03MATH domain-containing protein OS=Ciona savignyi O... [more]
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BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
ENSAMXT00000035169.11.983e-1033.33pep primary_assembly:Astyanax_mexicanus-2.0:9:3354... [more]
traf15.181e-737.65TNF receptor-associated factor 1-like [Source:NCBI... [more]
traf16.506e-737.65TNF receptor-associated factor 1-like [Source:NCBI... [more]
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BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSPMAT00000000074.15.625e-830.59pep scaffold:Pmarinus_7.0:GL482142:165593:173010:-... [more]
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BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 3
Match NameE-valueIdentityDescription
EDO494643.291e-830.85Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO388737.623e-833.33Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO495453.050e-636.36Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Baculoviral IAP repeat containing 2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
traf31.052e-832.18TNF receptor associated factor 3 [Source:NCBI gene... [more]
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BLAST of Baculoviral IAP repeat containing 2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000044524.12.673e-123100.00SMESG000044524.1[more]
SMESG000071705.11.794e-7484.83SMESG000071705.1[more]
SMESG000071705.13.189e-6881.82SMESG000071705.1[more]
SMESG000044525.18.667e-67100.00SMESG000044525.1[more]
SMESG000002520.11.831e-6184.30SMESG000002520.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30017806 ID=SMED30017806|Name=Baculoviral IAP repeat containing 2|organism=Schmidtea mediterranea sexual|type=transcript|length=4990bp
TATTCTTCCAGATATGCAAAGGTGATTTCGATGAATTACTAGAATGGCCT
TTAAAAAACAAAACATTCAAATCCGATCAGCGAAACCCATGCTATATACA
ACCCACAACCGAAGAGAATCTAGCAGCAGGAGCACGCGCATTCCTCCAAC
AAGAAATTTTGAGACAAGCTGCATACGTAAAAGACGATAATATCTATATA
AAAATAAATTTAATAAAAGAGAGTATAAATCCACTTGATTAATGAAGAGA
GACGTATATAAATGTATAAAGAGCAATGGGAGTGTAGATAAACCAAAACA
GAAAATCAATAAAAATGTGTTAGATGAAAAATTATAAAACAAAATAAAAA
CCAGAAAACTAAAATTAAATAAAAATCAGAAAACCAAAAATAAATAAAAA
TTAGAAAACCAAAAAAGGTTATATCGAAAAGTCAAAAACATTATGAAGTC
CAAAGAATATTAATGAGAATTTAGTTATAGAAATGGATAATATAATTAAA
AAGAACGAGAAAAAGAATCGAGCACTAAAATTTGATGAATTATTAAAAAG
AATAACGAATTCAGACGTCCAAAATACAAAATCAAATCCAAAAAAGGAAC
AAGAAAGGACCCCAAGTAAATGGGAAAGACAAATATCATTTGCGATACAA
AATGTATTTACCGAGAAACAGAGCAGAGAATTAGCAAGAGATGGATTTTA
TTTTTCCGGCACATTAGGGAAACCTAACTAAGTAACCTGTGTCTATTGTC
AAATAAATACGATGAGTATAGAAAATTAAAATGATATCACTAAAAAACAT
AAATTTTATTTACCAAGATTCCCATTTACAATGAAACTCAAAACCAGTCA
CCAAACAGATATACAGTTTAAAAAATTATTCGAAAGAGAACCGCCCAAAG
ACGAAGAACAAGAAATGTCAAGTTCACAATCAAATGAGGATATAATTAAT
CCAAGTTGGGAGCAACTATAATAAATCGCTAATAATAATCGAGTAACAAC
TTTCAGAAACGAAAAATTTGCCCTACCATTTGCAATGCAGGGATTTCAAT
CAAACGACAAACGGAACCTAAAATGCGTAAAATGTAAGATCAAATACCAA
TTCACAAAAGAAACACCACCAACATTGGAGCATTTAGAAGATTGTGTTTT
CAATTTAACCCTAACAGAAAAAGCACAAAAGCCACTGAGCAAAGACGAAA
TCAGAATAATCATTAAACAGCCTGAAATCAATGAAACAACTATAATAACT
GGTTATCACAACAGATTCACTAAAACGATACTGAGAAAGAATCAATATGA
ATCAATATTCGAACTAATCAAAGCAACACAACAATATGCAGAAAGACATC
ATGACTAGCTGGGTGAATCTAGTGTTAAAAAAGTAATATTGAGAGAACAC
AGTTGCACTATATGTTGGATGAAAAACGTAGAGGTGATCCATCTTCCTTG
TGGACACCTGCTACCATGCAAAGAGTACAACTAAAGCCTAATACAATGTT
CTATGTGTAGACAACCGATTGGTTAATGGATGAACATATTCCGTTTTGCC
GATCAATAAATAAACCTAAAAATGAAATTGTAAATAATGAATGTATAAAA
GAAGAATCAATAATACTGTAGTGTATAGATTACATATGATAAAATATTAA
AGAAAGTAATTTAGAAAAATGAATCACAAAGAAAGTCAAGCCAAAGTTGA
AGACCAAAAAAACAGCTGAAAGCGGAAAAGTTGGTGATAAAAATAGACAA
AATCTTAATCCAAGGAAGAAGAACTAAACAAACTGGAAATGGATATTGAA
GCACAACTATTAGTAATAATAAATAAAGAAGGAGTGATGAGGAAGTGGGG
TGAGGACACCGAGTTATACCAAGAAAACAGAAGACAATTCGAAGTAAAAT
AAGGCGAGATGAAAGAGAAAATTGAAATGTTGGTAAAACAAGTCGGAGAG
TTGGAACATTTGATCATGTGGTGTAGAGCAACGCAAAGCGGAAACGATAG
CCCAAATAAAAGCGAAAAGAACGAACAAAAAATAAACCAACTAAAACGTC
AAGCTCGAAATTGGAAACAAAAGTATATCACAACTAATAAAATGGAATAC
CAGAGAGGGTACGAAAGAATGAGAACTACTATAGAAAAATAACCAAGAGA
AAAGGAACATGAAATTGCCGAGTTAAATGAAGAAGGAATCTAATTGAAAC
CACAGCTTGCAGAATTAGATGATTATACTTACGAGTTGGAAGGAAGACGA
ATTATTGCATAAAAGGAGCAACGAGTCAATGAACTCGAAACGCAAAACTC
GAGAACTCGAGCAACAATTACTCGAGGACTGGAAGAAAGAAAAGAAATAC
TAAAGACTAACTATTACCATGCCATAACGCAAAATACGAAAGAAAAATCG
AGGCTAATCAACTCAAAATTTAAGCCCAAAGATGGAAACACGAATCCAAA
AGAACAAACCAACAACTAAAAGATAGTTGCAACCACAAAGTGAAATTCTA
GGAACAAGAGTGGCAAGATATAAACAATGAAAAGAAAACTATGGATAAAA
AATGGAAAAAATACTAAATAGAGATAAATCTAATAAAGAAGAAGAGAGAA
TCTCATAAACCGAGTGGTGAAAATCAAAACAAAATATTGAATCAAGTAAA
AGAACAAGCAAGAAAATGGAAATTAAAATATAAGGAAGAAGTAGAGATAG
TGAAATTAGTGAAAGAGGAAAAAGAACGCGATAACTCATTATTTATAGCT
AAAGTGGATGAGCGACAAGAACGGATAGAAGAGTTAGAAAAATCTCATGA
GAAAATAGAAAAAAAAACGATTGGACATGTTTCCAAGCCCGTAAATGGAA
GAAAAAGTGGAGAAACGTAAAAAATGAAATGAACGAATTACACAAAAAGA
TCCTGAATGAAAATGAATGGGAATTATGGGAAACCACAGAACAACAAAAA
AAAGACAAATGGAACAAGATGAAGAAAATTTCATAAAACACCTAAGTCAC
GAAGTAAAAGGATACGAACACGAATGCGCAAGATTAAAACGACAAGTAGA
TGGAGAAATCTACAAAACGGAACGATTACAACAACAATTAACCGAGGCAC
TACAAGATGCGAATGGGTTCCGAGGAATGTGCAATCAAAAAGATATAAAC
CTTGAGCACCAACGACTAGTAATGGAAAACTCTACAAAAGAGCATGAGAA
AGTTGCACAGCAGATGCAACAAGAAATGGAACTATTGAAGAATTGTTATG
AGGAAAACAAGAGAAATCTCAAAAGAAAGATTGAGAGATTACAGACATAC
GAACGGACAATTGCGTTAGAAGCTGAAGTAGAAAAACTAACTGAGAATTC
AGATTATCTCACTTATTTATTAGAAGAAGAAATCCAAGCCTCAGCAGAAG
CTAGAGAATAAACGAACCGATTACGGAACAGACCTCATATGGTATTATTA
CCTTTTTACCCAATTCTTCCAACGAGAAAGGATGAAGGTAATATAAAACA
AGACGAAACGTGGGTTTGAAAGTAAAGTGATTGTGTAGAATGTAAAGTGT
GGTCATGTAACAAAACGTGTAAAAAGTGTAAAAGTAAAAAAAACCAACCA
AAAAAAAACGTTCAAACAAAAGCGTTAAAAAAAACAAACTTGTTTAAAAA
CTAAATACTAAAAACGTCATTATTTTAGAAATAAATCTTCTCAACGAAAA
TATCACATGGAAGAAAACAATATTACTACAGAAACGAATAATACCAAAGA
AATTATGATATTGAAAGAGAATGAACAACTTTATAACGAGATCCGAGAGA
AACAAGCTGAGATCCATGGATTCACCAACCAAATGAGACAAGAAAAAATA
CTTAAAAATACAACTAAGGCCTAATTTCGAATAGTAAAAATGGATCTAAC
TACGGAACGAGAATTAAATGGAAGTCTAATTAGGAAAAATGCACAATTTC
AAACACATGAAACATTAGAAAATTACTGGAAAAATGAATCAAAACAATCG
ATAGAAATATTTACGAAAAATAAAGCCTATATCGACAAGTTAGAAAAAGA
AAACGGAAAGTACTACGAGAAGAAAGAGTTTGTACAAAAAGAAAACCGAA
ATCTGACAAAAATAATCAGACGCCAACGACAAGAACTAGCAAGACCGTCT
AACGAGAAAAATCACTATCAAAAAATGGCAAAATTGAAAATTAAGAAAAT
TCAAGAATTACAACGACAATTGACGAAGTAAAGATCAAAAAATTCAAATA
TGTTGGAACAAACTAATTAACTCAAAAATTTACAAAAACAATTTATGATT
ATCCTAGCTCGACAAGACAAAGCTACTGCATTACTAAAAACAATTATGGA
ACAAGAAACTAAAGCAGAGCTACTAAAAGCAATAGAAGAACATCTCGAAA
GCAAACAAAATATCAAATCAACATCAACTAATCGAATCATGGACGACGAG
AACAATCCTAGTAAAGGAGTGCATTTTTAACTACGTCCCAATAAATCATG
AAAGACAATTGTATATAAAATTCGAGAAGCATAATCTTGATCTAAACCTA
TATCGAAAAACACAATCAATCAAAGTTAATCACAAAATCCTACCATAAGA
TTTTCTAAGAATCGAATCAACAATCCAGTCCAATATTAAACCTAAATTCT
AAAACTAAAGAAACCTAAGTAGTTCATTCAATATCTAAATCAAAATCCAT
ATCTAATCAGCTAAACAGTCATTATCTCTACGACAATTACCTAATCCAAA
TCTCGAAAAACCTAATCCTCAAGAAAACCGAATGTCAACCAATTCAGCAA
CCGATAAAATCAAGAGAACTAATCTTAACAAAAAGAAACCCTGCCGATGA
GTGGCAAATGATCGTGATTATGCAGAACCATATTTTGATATTAAATACTA
TGATTTTAAAACCAGTCTATCTGTGCTATAAAAAGTTATTTATTCCTTTT
TATTTTGGCACGAGTATGTGGTTATATGTATAAGTCAAGA
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protein sequence of SMED30017806-orf-1

>SMED30017806-orf-1 ID=SMED30017806-orf-1|Name=SMED30017806-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=108bp
MQGFQSNDKRNLKCVKCKIKYQFTKETPPTLEHLEDCVFNLTLTEKAQKP
LSKDEIRIIIKQPEINETTIITGYHNRFTKTILRKNQYESIFELIKATQQ
YAERHHD*
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protein sequence of SMED30017806-orf-2

>SMED30017806-orf-2 ID=SMED30017806-orf-2|Name=SMED30017806-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=114bp
MDLTTERELNGSLIRKNAQFQTHETLENYWKNESKQSIEIFTKNKAYIDK
LEKENGKYYEKKEFVQKENRNLTKIIRRQRQELARPSNEKNHYQKMAKLK
IKKIQELQRQLTK*
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protein sequence of SMED30017806-orf-3

>SMED30017806-orf-3 ID=SMED30017806-orf-3|Name=SMED30017806-orf-3|organism=Schmidtea mediterranea sexual|type=polypeptide|length=165bp
MGIMGNHRTTKKRQMEQDEENFIKHLSHEVKGYEHECARLKRQVDGEIYK
TERLQQQLTEALQDANGFRGMCNQKDINLEHQRLVMENSTKEHEKVAQQM
QQEMELLKNCYEENKRNLKRKIERLQTYERTIALEAEVEKLTENSDYLTY
LLEEEIQASAEARE*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002032epidermal cell
Vocabulary: INTERPRO
TermDefinition
IPR008974TRAF-like
IPR013083Znf_RING/FYVE/PHD
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO:0016740transferase activity
GO:0019901protein kinase binding
GO:0019903protein phosphatase binding
GO:0031625ubiquitin protein ligase binding
GO:0031996thioesterase binding
GO:0046872metal ion binding
GO:0004842ubiquitin-protein transferase activity
GO:0005164tumor necrosis factor receptor binding
Vocabulary: biological process
TermDefinition
GO:0007165signal transduction
GO:0008063Toll signaling pathway
GO:0016567protein ubiquitination
GO:0030162regulation of proteolysis
GO:0032088negative regulation of NF-kappaB transcription factor activity
GO:0032648regulation of interferon-beta production
GO:0033209tumor necrosis factor-mediated signaling pathway
GO:0042981regulation of apoptotic process
GO:0045087innate immune response
GO:0050688regulation of defense response to virus
GO:0001817regulation of cytokine production
GO:0002224toll-like receptor signaling pathway
GO:0002376immune system process
GO:0006915apoptotic process
Vocabulary: cellular component
TermDefinition
GO:0009898cytoplasmic side of plasma membrane
GO:0035631CD40 receptor complex
GO:0005737cytoplasm
GO:0005768endosome
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 23..43
NoneNo IPR availableCOILSCoilCoilcoord: 86..131