neurofilament heavy polypeptide isoform X5
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30017759 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8
Homology
BLAST of neurofilament heavy polypeptide isoform X5 vs. TrEMBL
Match: A0A267FZI3 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig016521g1 PE=4 SV=1) HSP 1 Score: 405.986 bits (1042), Expect = 3.598e-126 Identity = 256/684 (37.43%), Postives = 450/684 (65.79%), Query Frame = 3 Query: 84 FRSKYSTLPKIS--EFSNTDLI-PYNEKNMSS---------SSPDSIERINSLETRLSITEKSNRALLDEVVRLHNEFRTTSKQYEDAFKEEKRVRSFIENHWKQSQEQIKDLELRLRSTEDLLNQERYQIRDLVNQSKSVEESMFTSKKDTSLLNERYISKLAQLEREMETLNDNRNKIERISFQLVDEMRAIKSKLESQGFDFHAVTHELRNKSKKLEDEYQQNLDVVKKQLSRNDNSITDS-MYRPAVDQKLAEMKDYITQIRTWFDDEVNERRILEKTIMSKFTEISHAMSEQTRIRDEAIRQIQYLQRERDHKIETERMLIQNKIGEITEQINSRVLEKDLRLREDQLKRQTELEKLMRSEQXXXXXXXXXXXXXXXXXXXAMRQLQLDELNSIKDSFRYDKIKYVESIKRLDESLSLLERQIDENKQEITKIITAEVKARSNSEKLFKERYTELEEKIMAATSSLQHALSGVFDKSMPNNDKIRKLTNDTIDEYKASINRQIADLDARILHLQTLSSGGSADFEERIKEVISSVNSALKERIETISLNQGATSASIAXXXXXXXXXXXXXXXXNELFMLAKAESSGRITAEMNSRIETEEALRFELEKLRETIPK-EIVNKTDLEKVKSTARKLAESMQTIKTVLGMKIQSEQNLRIEEIKHHQEELTQLKSLIEPLV 2093 F S++ LP IS E L P+N + S+ SS D ER+ SLETRL + E+SNR LLDEV+RL E R S++ E+A +EE++ R ++E + S + L R+R+ E+ L ER + D+VNQ++SVE+ ++D + E IS++A LER++E++ + ++ER++FQLV+EMRA+K +LE+QG DF VT +L+ KS++LED+Y L+ V+++L + S R VD K+ E++D +T++R+ + E +ERR LE+ + S+ T+++ A++EQ R RDEA+ ++ QRER+ + E +R +Q ++ + E++N ++LEK++RLRE+ +RQTE EK++ EQE+R++YE+E R E ERR + +R+ +EL S++ + + D+ K VES++++D+++ +LE+Q++E ++++++++ AE+ +R +K K+R ++EEKI AAT++LQ A++GV + ++ +K + ++EY+ R++AD++A++ L+ +G E ++ +++ L+E++E+ISL Q T+A +A++K + + + + E L K ++ I AE++ R++ ++LR E++ +R IPK E + K DLE+ +++ R+LAE QT+KTVLGMKIQSEQ LR+EE+K+ Q ++ QL+++IEPL+ Sbjct: 40 FPSRFPPLPDISGQEQPLEPLARPFNASSYSAAPAANTAADSSSD--ERVRSLETRLGLAERSNRGLLDEVLRLQTEVRAVSRRGEEAIREERQARQYLEASLRTSSDLTSQLAQRIRAQEERLADERAALADVVNQTRSVEQLTLERQQDLTAKRESQISRIATLERDLESMTRAKGQLERVAFQLVEEMRALKQRLEAQGLDFSTVTSDLKVKSRRLEDDYNLRLESVQRKLEKTSELDQQSQQLRGLVDAKITELRDALTELRSRSETESDERRNLEQKLGSRLTQMNSALAEQARKRDEALHGMEQRQRERERQAEVDRATLQARLQDSLEEVNQKILEKEIRLREEAARRQTESEKMILQEQESRLAYEKEARQEQERRWDTLRRAHEEELASLRATHKSDRAKTVESVRKIDDAVVILEKQLEETRKDMSRVLGAEIASRKAKDKDTKDRMHDVEEKISAATAALQQAVAGVSTQMRSLSEANKKHMQEMLEEYRKENGRKLADIEAQLESLRQRLAGVDDRVESKLAAATTAMTQNLREKVESISLWQTQTNAQVAEMKAMHKTIDEGVNRNTERINLLKEDTRANIGAEVSGRVQDVDSLRKEIDIVRSLIPKDEGITKRDLEECQASIRRLAEITQTVKTVLGMKIQSEQKLRVEEVKNVQNDIAQLRAIIEPLI 721
BLAST of neurofilament heavy polypeptide isoform X5 vs. TrEMBL
Match: A0A1I8HGB3 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1) HSP 1 Score: 402.134 bits (1032), Expect = 2.402e-125 Identity = 242/637 (37.99%), Postives = 430/637 (67.50%), Query Frame = 3 Query: 189 ERINSLETRLSITEKSNRALLDEVVRLHNEFRTTSKQYEDAFKEEKRVRSFIENHWKQSQEQIKDLELRLRSTEDLLNQERYQIRDLVNQSKSVEESMFTSKKDTSLLNERYISKLAQLEREMETLNDNRNKIERISFQLVDEMRAIKSKLESQGFDFHAVTHELRNKSKKLEDEYQQNLDVVKKQLSRNDNSITDS-MYRPAVDQKLAEMKDYITQIRTWFDDEVNERRILEKTIMSKFTEISHAMSEQTRIRDEAIRQIQYLQRERDHKIETERMLIQNKIGEITEQINSRVLEKDLRLREDQLKRQTELEKLMRSEQXXXXXXXXXXXXXXXXXXXAMRQLQLDELNSIKDSFRYDKIKYVESIKRLDESLSLLERQIDENKQEITKIITAEVKARSNSEKLFKERYTELEEKIMAATSSLQHALSGVFDKSMPNNDKIRKLTNDTIDEYKASINRQIADLDARILHLQTLSSGGSADFEERIKEVISSVNSALKERIETISLNQGATSASIAXXXXXXXXXXXXXXXXNELFMLAKAESSGRITAEMNSRIETEEALRFELEKLRETIPK-EIVNKTDLEKVKSTARKLAESMQTIKTVLGMKIQSEQNLRIEEIKHHQEELTQLKSLIEPLV 2093 ER+ SLETRL + E+SNR LLDEV+RL E R S++ E+A +EE++ R ++E + S + L R+R+ E+ L ER + D+VNQ++SVE+ ++D + E IS++A LER++E++ + ++ER++FQLV+EMRA+K +LE+QG DF VT +L+ KS++LED+Y L+ V+++L + S R VD K+ E++D +T++R+ + E +ERR LE+ + S+ T+++ A++EQ R RDEA+ ++ QRER+ + E +R +Q ++ + E++N ++LEK++RLRE+ +RQ E EK++ EQE+R++YE+E R E ERR + +R+ +EL S++ + + D+ K VES++++D+++ +LE+Q++E ++++++++ AE+ +R +K K+R E+EEKI AAT++LQ A++GV + ++ +K + ++EY+ R++AD++A++ L+ +G E ++ +++ L+E++E+ISL Q T+A +A++K + + + + E L K ++ I AE++ R++ ++LR E++ +R IPK E + K DLE+ +++ R+LAE QT+KTVLGMKIQSEQ LR+EE+K+ Q ++ QL+++IEPL+ Sbjct: 32 ERVRSLETRLGLAERSNRGLLDEVLRLQTEVRAVSRRGEEAIREERQARQYLEASLRTSSDLTSQLAQRIRAQEERLADERAALADVVNQTRSVEQLTLERQQDLTAKRESQISRIATLERDLESMTRAKGQLERVAFQLVEEMRALKQRLEAQGLDFSTVTSDLKVKSRRLEDDYNLRLESVQRKLEKTSELDQQSQQLRGLVDAKITELRDALTELRSRSETESDERRNLEQKLGSRLTQMNSALAEQARKRDEALHGMEQRQRERERQAEVDRATLQARLQDSLEEVNQKILEKEIRLREEAARRQAESEKMILQEQESRLAYEKEARQEQERRWDTLRRAHEEELASLRATHKSDRAKTVESVRKIDDAVVILEKQLEETRKDMSRVLGAEIASRKAKDKDTKDRMHEVEEKISAATAALQQAVAGVSTQMRSLSEANKKHMQEMLEEYRKENGRKLADIEAQLESLRQRLAGVDDRVESKLAAATTAMTQNLREKVESISLWQTQTNAQVAEMKAMHKTIDEGVNRNTERINLLKEDTRANIGAEVSGRVQDVDSLRKEIDIVRSLIPKDEGITKRDLEECQASIRRLAEITQTVKTVLGMKIQSEQKLRVEEVKNVQNDIAQLRAIIEPLI 668
BLAST of neurofilament heavy polypeptide isoform X5 vs. TrEMBL
Match: A0A267H186 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig016521g2 PE=4 SV=1) HSP 1 Score: 403.675 bits (1036), Expect = 3.479e-125 Identity = 253/682 (37.10%), Postives = 448/682 (65.69%), Query Frame = 3 Query: 84 FRSKYSTLPKIS--EFSNTDLI-PYNEKNMSSSSPDSI-------ERINSLETRLSITEKSNRALLDEVVRLHNEFRTTSKQYEDAFKEEKRVRSFIENHWKQSQEQIKDLELRLRSTEDLLNQERYQIRDLVNQSKSVEESMFTSKKDTSLLNERYISKLAQLEREMETLNDNRNKIERISFQLVDEMRAIKSKLESQGFDFHAVTHELRNKSKKLEDEYQQNLDVVKKQLSRNDNSITDS-MYRPAVDQKLAEMKDYITQIRTWFDDEVNERRILEKTIMSKFTEISHAMSEQTRIRDEAIRQIQYLQRERDHKIETERMLIQNKIGEITEQINSRVLEKDLRLREDQLKRQTELEKLMRSEQXXXXXXXXXXXXXXXXXXXAMRQLQLDELNSIKDSFRYDKIKYVESIKRLDESLSLLERQIDENKQEITKIITAEVKARSNSEKLFKERYTELEEKIMAATSSLQHALSGVFDKSMPNNDKIRKLTNDTIDEYKASINRQIADLDARILHLQTLSSGGSADFEERIKEVISSVNSALKERIETISLNQGATSASIAXXXXXXXXXXXXXXXXNELFMLAKAESSGRITAEMNSRIETEEALRFELEKLRETIPK-EIVNKTDLEKVKSTARKLAESMQTIKTVLGMKIQSEQNLRIEEIKHHQEELTQLKSLIEPLV 2093 F S++ LP IS E L P+N + S++ + ER+ SLETRL + E+SNR LLDEV+RL E R S++ E+A +EE++ R ++E + S + L R+R+ E+ L ER + D+VNQ++SVE+ ++D + E IS++A LER++E++ + ++ER++FQLV+EMRA+K +LE+QG DF VT +L+ KS++LED+Y L+ V+++L + S R VD K+ E++D +T++R+ + E +ERR LE+ + S+ T+++ A++EQ R RDEA+ ++ QRER+ + E +R +Q ++ + E++N ++LEK++RLRE+ +RQ E EK++ EQE+R++YE+E R E ERR + +R+ +EL S++ + + D+ K VES++++D+++ +LE+Q++E ++++++++ AE+ +R +K K+R E+EEKI AAT++LQ A++GV + ++ +K + ++EY+ R++AD++A++ L+ +G E ++ +++ L+E++E+ISL Q T+A +A++K + + + + E L K ++ I AE++ R++ ++LR E++ +R IPK E + K DLE+ +++ R+LAE QT+KTVLGMKIQSEQ LR+EE+K+ Q ++ QL+++IEPL+ Sbjct: 40 FPSRFPPLPDISGQEQQLEPLARPFNASSYSAAPAANSAADSSSDERVRSLETRLGLAERSNRGLLDEVLRLQTEVRAVSRRGEEAIREERQARQYLEASLRTSSDLTSQLAQRIRAQEERLADERAALADVVNQTRSVEQLTLERQQDLTAKRESQISRIATLERDLESMTRAKGQLERVAFQLVEEMRALKQRLEAQGLDFSTVTSDLKVKSRRLEDDYNLRLESVQRKLEKTSELDQQSQQLRGLVDAKITELRDALTELRSRSETESDERRNLEQKLGSRLTQMNSALAEQARKRDEALHGMEQRQRERERQAEVDRATLQARLQDSLEEVNQKILEKEIRLREEAARRQAESEKMILQEQESRLAYEKEARQEQERRWDTLRRAHEEELASLRATHKSDRAKTVESVRKIDDAVVILEKQLEETRKDMSRVLGAEIASRKAKDKDTKDRMHEVEEKISAATAALQQAVAGVSTQMRSLSEANKKHMQEMLEEYRKENGRKLADIEAQLESLRQRLAGVDDRVESKLAAATTAMTQNLREKVESISLWQTQTNAQVAEMKAVHKTIDEGVNRNTERINLLKEDTRANIGAEVSGRVQDVDSLRKEIDIVRSLIPKDEGITKRDLEECQASIRRLAEITQTVKTVLGMKIQSEQKLRVEEVKNVQNDIAQLRAIIEPLI 721
BLAST of neurofilament heavy polypeptide isoform X5 vs. TrEMBL
Match: A0A1S3H751 (neurofilament heavy polypeptide isoform X5 OS=Lingula unguis OX=7574 GN=LOC106152771 PE=4 SV=1) HSP 1 Score: 357.836 bits (917), Expect = 4.068e-104 Identity = 242/694 (34.87%), Postives = 430/694 (61.96%), Query Frame = 3 Query: 84 FRSKYSTLPKI----SEFSNTD--LIPYNEKNMSSSSPDSIERINSLETRLSITEKSNRALLDEVVRLHNEFRTTSKQYEDAFKEEKRVRSFIENHWKQSQEQIKDLELRLRSTEDLLNQERYQIRDLVNQSKSVEESMFTSKKDTSLLNERYISKLAQLEREMETLNDNRNKIERISFQLVDEMRAIKSKLESQGFDFHAVTHELRNKSKKLEDEYQQN-LDVVKKQL---SRNDNSITDSMYRPAVDQKLAEMKDYITQIRTWFDDEVNERRILEKTIMSKFTEISHAMSEQTRIRDEAIRQIQYLQRERDHKIETERMLIQNKIGEITEQINSRVLEKDLRLREDQLKRQTELEKLMRSEQXXXXXXXXXXXXXXXXXXXAMRQLQLDELNSIKDSFRYDKIKYVESIKRLDESLSLLERQIDENKQEITKIITAEVKARSNSEKLFKERYTELEEKIMAATSSLQHALSGVFDKSMPNNDKIRKLTNDTIDEYKASINRQIADLDARILHLQTLSSGGSADFEERIKEVISSVNSALKERIETISLNQGATSASIAXXXXXXXXXXXXXXXXNELFMLAKAESSGRITAEMNSRIETEEALRFELEKLRETIPKEIVN--------------KTDLEKVKSTARKLAESMQTIKTVLGMKIQSEQNLRIEEIKHHQEELTQLKSLIEPLV 2093 F SKY LP I S D ++P + S + ER+ LETR+++TEKSNRALL+EVVRL +E +T ++ ED +EE++ R +EN + S + I L RL+ TED + +ER I LVN +KSVE+++ S+++ E ++L +++ E+E ++ ++++ER++F LVDEMR +K ++++Q DF +V ++L+NK+K+LE+E +Q L+ V+K S +D+ T S R ++ +L+E++D + +R + E ERR+LE+ + K +E+ ++EQ R R+EA+ + +QRER+H ETER+ +Q KI E E+++ ++L+K+++LRE+ ++ +EKL+ +EQ R+++E ++R E ++R +++++ +L ++K + + ++ K E++ +LDE++ LL+ QI++ K++ K+++AE+K+R E+ +E+ L+EK+ ATS+LQ A+ G+ K +D+++K +E R +ADLD R+ L + S E +I ++ +++++E+ISL Q TS SI ++ + Q+L E+Y+L E L K++ +G++TAE SR E LR +L +L K + + D+++ + + KLAES+QTIKTVLGMKI +E LR+EE+K+ Q+EL +L+ L++PL+ Sbjct: 24 FPSKYGALPSIQNRNSPIPTKDNQVVPMDH----SFDAEPEERLRHLETRVNVTEKSNRALLEEVVRLQSELKTNVRRSEDVLREERQTRLQLENSLRASNDLIAQLSSRLKRTEDKIAEERMAISALVNHTKSVEQAVLGSQQELVSRKEAQTARLQEMKEELEEVSRAKDQLERLTFNLVDEMRQLKGRMDNQNMDFASVANDLKNKNKRLEEENRQTRLESVRKHAEVQSLSDS--TSSQLRQQIESRLSELRDVLVDLRGKQEGETQERRMLEQAVQKKISELMSNIAEQNRKREEAMHALDSIQREREHAAETERIKLQGKIAETAEEVSKKILQKEIKLREESQEKFNMVEKLISNEQSARMAFESDLRRELDKRWDSVKKSNEGDLQAVKQAQKLERAKTSETLHKLDEAVDLLQGQIEQYKKQQEKLLSAEIKSRKTHERDTREKVENLQEKLGIATSTLQAAVGGIMTKLQTESDRLKKEMKSIAEEEAQKNTRLMADLDTRVTGLNSKISNVEDSLEAKITGSSAAQAQNMRDKVESISLWQDVTSQSIRDIQYKVQELPMEVYQLQEKHELLKSDLTGKVTAEAESRKRDVENLRRDLSRLVAAPGKGLAGDKTATKSDFDAYKLREDIDECQESLHKLAESVQTIKTVLGMKIATESKLRVEEVKNLQDELNRLRGLVDPLL 711
BLAST of neurofilament heavy polypeptide isoform X5 vs. TrEMBL
Match: A0A210QGC4 (Uncharacterized protein OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT06197 PE=4 SV=1) HSP 1 Score: 343.584 bits (880), Expect = 1.763e-102 Identity = 236/683 (34.55%), Postives = 421/683 (61.64%), Query Frame = 3 Query: 84 FRSKYSTLPKIS--EFSNTDLIPYNEKNMSSSSPD--SIERINSLETRLSITEKSNRALLDEVVRLHNEFRTTSKQYEDAFKEEKRVRSFIENHWKQSQEQIKDLELRLRSTEDLLNQERYQIRDLVNQSKSVEESMFTSKKDTSLLNERYI--SKLAQLEREMETLNDNRNKIERISFQLVDEMRAIKSKLESQGFDFHAVTHELRNKSKKLEDEYQQNLDVVKKQLSRNDNSITDS-MYRPAVDQKLAEMKDYITQIRTWFDDEVNERRILEKTIMSKFTEISHAMSEQTRIRDEAIRQIQYLQRERDHKIETERMLIQNKIGEITEQINSRVLEKDLRLREDQLKRQTELEKLMRSEQXXXXXXXXXXXXXXXXXXXAMRQLQLDELNSIKDSFRYDKIKYVESIKRLDESLSLLERQIDENKQEITKIITAEVKARSNSEKLFKERYTELEEKIMAATSSLQHALSGVFDKSMPNNDKIRKLTNDTIDEYKASINRQIADLDARILHLQTLSSGGSADFEERIKEVISSVNS----ALKERIETISLNQGATSASIAXXXXXXXXXXXXXXXXNELFMLAKAESSGRITAEMNSRIETEEALRFELEKLRETIPKEIVNKTDLEKVKSTARKLAESMQTIKTVLGMKIQSEQNLRIEEIKHHQEELTQLKSLIEPLVFK 2099 +S+YS LP I+ L+P + S D +R +E RLS+ EKSNRALL+EV+RL + ++++++ ED ++E+ R +E+ K S E I L R++ E+ L E+ + LVN +K VE+++ +S+ + LL +R I SKL+++ ++E + ++++ER++FQL D++R +K K++SQ DF+AV+ +L+NKSKKLEDE + LD ++K S S + + R V+ +L E++D + +RT ++EV+ERR LE+++ K E+ +++E R RDE + + + RER+H + +R+ + K+ + E +N +++EKD+++R + R +LE++++ +Q TR YER R E E+RL ++++Q ++ IKD + +K K ++ +LD+S+++LE+Q+ E K+ K++ AE+ R E+ E+ + EK+ ATS+LQ ++ G+ + ++K+R+ + E K R + DLDAR+ + S D EE+++ +++ + +L+E+++TIS Q TS ++ +L + Q+L +EIY + E L K+E + R+TAE ++RI E L+ E++ L+ + +D+E V+++ R+LA+S+QT+KTVLGMKIQSEQ LR ++++ QEE+ L++ IEPLV K Sbjct: 25 LQSRYSQLPNINTPRVQEGQLVPLQGRKTSPGYIDYEGDDRFRQMEVRLSVAEKSNRALLEEVLRLQGDIKSSTRRNEDILRDERNSRQNLESAIKISNELISQLGTRIKDAEEKLQDEKSALSSLVNHTKGVEQAVKSSQNE--LLTKRDIQGSKLSEMRVDLEEVLQAKSQLERVAFQLADDLRTLKIKVDSQAADFNAVSGDLKNKSKKLEDENRAQLDALRKHTSNQSQSEQQATLLRGQVETRLTELRDVLVDVRTKQENEVSERRGLEQSMQQKINELQQSLAEANRKRDETVHSMDMVLREREHATQADRLSLTTKVADTVEDLNKKLMEKDIKIRGEVQDRYLQLERVLQQDQGTRREYERATRDELEKRLGTLKKVQDEQAVEIKDLMKTEKGKTKNTLGKLDDSITILEKQVLETKKSFEKVMAAEISQRKIHERDTAEKIGSVNEKLQIATSTLQQSIGGITHTANNQHEKLRREMRTLLAEQKEGTTRSLTDLDARMNY----SKNRMNDLEEKLEAKMAAASQNLAESLREKVDTISAWQEQTSQTVKELSLGVQRLPEEIYSVQEKQTLMKSEMNSRMTAEADARIREIENLKQEVQMLKMKREPKAATISDIENVQASVRRLADSIQTVKTVLGMKIQSEQKLRTDDVQKLQEEIAILRTAIEPLVKK 701
BLAST of neurofilament heavy polypeptide isoform X5 vs. Planmine SMEST
Match: SMESG000068550.1 (SMESG000068550.1) HSP 1 Score: 1289.25 bits (3335), Expect = 0.000e+0 Identity = 720/723 (99.59%), Postives = 722/723 (99.86%), Query Frame = 3 Query: 39 MSHLNDNNSEEMINGFRSKYSTLPKISEFSNTDLIPYNEKNMSSSSPDSIERINSLETRLSITEKSNRALLDEVVRLHNEFRTTSKQYEDAFKEEKRVRSFIENHWKQSQEQIKDLELRLRSTEDLLNQERYQIRDLVNQSKSVEESMFTSKKDTSLLNERYISKLAQLEREMETLNDNRNKIERISFQLVDEMRAIKSKLESQGFDFHAVTHELRNKSKKLEDEYQQNLDVVKKQLSRNDNSITDSMYRPAVDQKLAEMKDYITQIRTWFDDEVNERRILEKTIMSKFTEISHAMSEQTRIRDEAIRQIQYLQRERDHKIETERMLIQNKIGEITEQINSRVLEKDLRLREDQLKRQTELEKLMRSEQXXXXXXXXXXXXXXXXXXXAMRQLQLDELNSIKDSFRYDKIKYVESIKRLDESLSLLERQIDENKQEITKIITAEVKARSNSEKLFKERYTELEEKIMAATSSLQHALSGVFDKSMPNNDKIRKLTNDTIDEYKASINRQIADLDARILHLQTLSSGGSADFEERIKEVISSVNSALKERIETISLNQGATSASIAXXXXXXXXXXXXXXXXNELFMLAKAESSGRITAEMNSRIETEEALRFELEKLRETIPKEIVNKTDLEKVKSTARKLAESMQTIKTVLGMKIQSEQNLRIEEIKHHQEELTQLKSLIEPLVFKXXXXXXXXXXXXXXXXXXXXXXXXXXXEDKKDEPEI 2207 MSHLN+NNSEEMINGFRSKYSTLPKISEFSNTDLIPYNEKNMSSSSPDSIERINSLETRLSITEKSNRALLDEVVRLHNEFRTTSKQYEDAFKEEKRVRSFIENHWKQSQEQIKDLELRLRSTEDLLNQERYQIRDLVNQSKSVEESMFTSKKDTSLLNERYISKLAQLEREMETLNDNRNKIERISFQLVDEMRAIKSKLESQGFDFHAVTHELRNKSKKLEDEYQQNLDVVKKQLSRNDNSITDSMYRPAVDQKLAEMKDYITQIRTWFDDEVNERRILEKTIMSKFTEISHAMSEQTRIRDEAIRQIQYLQRERDHKIETERMLIQNKIGEITEQINSRVLEKDLRLREDQLKRQTELEKLMRSEQETRISYEREIRIENERRLEAMRQLQLDELNSIKDSFRYDK+KYVESIKRLDESLSLLERQIDENKQEITKIITAEVKARSNSEKLFKERYTELEEKIMAATSSLQHALSGVFDKSMPNNDKIRKLTNDTIDEYKASINRQIADLDARILHLQTLSSGGSADFEERIKEVISSVNSALKERIETISLNQGATSASIAQLKIQKQQLKQEIYELNELFMLAKAESSGRITAEMNSRIETEEALRFELEKLRETIPKEIVNKTDLEKVKSTARKLAESMQTIKTVLGMKIQSEQNLRIEEIKHHQEELTQLKSLIEPLVFKASARDSDDADKPTTDPDPD DPTHPWDEDKKDEPEI Sbjct: 1 MSHLNENNSEEMINGFRSKYSTLPKISEFSNTDLIPYNEKNMSSSSPDSIERINSLETRLSITEKSNRALLDEVVRLHNEFRTTSKQYEDAFKEEKRVRSFIENHWKQSQEQIKDLELRLRSTEDLLNQERYQIRDLVNQSKSVEESMFTSKKDTSLLNERYISKLAQLEREMETLNDNRNKIERISFQLVDEMRAIKSKLESQGFDFHAVTHELRNKSKKLEDEYQQNLDVVKKQLSRNDNSITDSMYRPAVDQKLAEMKDYITQIRTWFDDEVNERRILEKTIMSKFTEISHAMSEQTRIRDEAIRQIQYLQRERDHKIETERMLIQNKIGEITEQINSRVLEKDLRLREDQLKRQTELEKLMRSEQETRISYEREIRIENERRLEAMRQLQLDELNSIKDSFRYDKMKYVESIKRLDESLSLLERQIDENKQEITKIITAEVKARSNSEKLFKERYTELEEKIMAATSSLQHALSGVFDKSMPNNDKIRKLTNDTIDEYKASINRQIADLDARILHLQTLSSGGSADFEERIKEVISSVNSALKERIETISLNQGATSASIAQLKIQKQQLKQEIYELNELFMLAKAESSGRITAEMNSRIETEEALRFELEKLRETIPKEIVNKTDLEKVKSTARKLAESMQTIKTVLGMKIQSEQNLRIEEIKHHQEELTQLKSLIEPLVFKASARDSDDADKPTTDPDPDPDPTHPWDEDKKDEPEI 723
BLAST of neurofilament heavy polypeptide isoform X5 vs. Planmine SMEST
Match: SMESG000068550.1 (SMESG000068550.1) HSP 1 Score: 1269.99 bits (3285), Expect = 0.000e+0 Identity = 719/752 (95.61%), Postives = 721/752 (95.88%), Query Frame = 3 Query: 39 MSHLNDNNSEEMINGFRSKYSTLPKISEFSNTDLIPYNEKNMSSSSPDSIERINSLETRLSITEKSNRALLDEVVRLHNEFRTTSKQYED-----------------------------AFKEEKRVRSFIENHWKQSQEQIKDLELRLRSTEDLLNQERYQIRDLVNQSKSVEESMFTSKKDTSLLNERYISKLAQLEREMETLNDNRNKIERISFQLVDEMRAIKSKLESQGFDFHAVTHELRNKSKKLEDEYQQNLDVVKKQLSRNDNSITDSMYRPAVDQKLAEMKDYITQIRTWFDDEVNERRILEKTIMSKFTEISHAMSEQTRIRDEAIRQIQYLQRERDHKIETERMLIQNKIGEITEQINSRVLEKDLRLREDQLKRQTELEKLMRSEQXXXXXXXXXXXXXXXXXXXAMRQLQLDELNSIKDSFRYDKIKYVESIKRLDESLSLLERQIDENKQEITKIITAEVKARSNSEKLFKERYTELEEKIMAATSSLQHALSGVFDKSMPNNDKIRKLTNDTIDEYKASINRQIADLDARILHLQTLSSGGSADFEERIKEVISSVNSALKERIETISLNQGATSASIAXXXXXXXXXXXXXXXXNELFMLAKAESSGRITAEMNSRIETEEALRFELEKLRETIPKEIVNKTDLEKVKSTARKLAESMQTIKTVLGMKIQSEQNLRIEEIKHHQEELTQLKSLIEPLVFKXXXXXXXXXXXXXXXXXXXXXXXXXXXEDKKDEPEI 2207 MSHLN+NNSEEMINGFRSKYSTLPKISEFSNTDLIPYNEKNMSSSSPDSIERINSLETRLSITEKSNRALLDEVVRLHNEFRTTSKQYED FKEEKRVRSFIENHWKQSQEQIKDLELRLRSTEDLLNQERYQIRDLVNQSKSVEESMFTSKKDTSLLNERYISKLAQLEREMETLNDNRNKIERISFQLVDEMRAIKSKLESQGFDFHAVTHELRNKSKKLEDEYQQNLDVVKKQLSRNDNSITDSMYRPAVDQKLAEMKDYITQIRTWFDDEVNERRILEKTIMSKFTEISHAMSEQTRIRDEAIRQIQYLQRERDHKIETERMLIQNKIGEITEQINSRVLEKDLRLREDQLKRQTELEKLMRSEQETRISYEREIRIENERRLEAMRQLQLDELNSIKDSFRYDK+KYVESIKRLDESLSLLERQIDENKQEITKIITAEVKARSNSEKLFKERYTELEEKIMAATSSLQHALSGVFDKSMPNNDKIRKLTNDTIDEYKASINRQIADLDARILHLQTLSSGGSADFEERIKEVISSVNSALKERIETISLNQGATSASIAQLKIQKQQLKQEIYELNELFMLAKAESSGRITAEMNSRIETEEALRFELEKLRETIPKEIVNKTDLEKVKSTARKLAESMQTIKTVLGMKIQSEQNLRIEEIKHHQEELTQLKSLIEPLVFKASARDSDDADKPTTDPDPD DPTHPWDEDKKDEPEI Sbjct: 1 MSHLNENNSEEMINGFRSKYSTLPKISEFSNTDLIPYNEKNMSSSSPDSIERINSLETRLSITEKSNRALLDEVVRLHNEFRTTSKQYEDDFAHDSTVKLKILNISICKVCQMEWKRLNTFKEEKRVRSFIENHWKQSQEQIKDLELRLRSTEDLLNQERYQIRDLVNQSKSVEESMFTSKKDTSLLNERYISKLAQLEREMETLNDNRNKIERISFQLVDEMRAIKSKLESQGFDFHAVTHELRNKSKKLEDEYQQNLDVVKKQLSRNDNSITDSMYRPAVDQKLAEMKDYITQIRTWFDDEVNERRILEKTIMSKFTEISHAMSEQTRIRDEAIRQIQYLQRERDHKIETERMLIQNKIGEITEQINSRVLEKDLRLREDQLKRQTELEKLMRSEQETRISYEREIRIENERRLEAMRQLQLDELNSIKDSFRYDKMKYVESIKRLDESLSLLERQIDENKQEITKIITAEVKARSNSEKLFKERYTELEEKIMAATSSLQHALSGVFDKSMPNNDKIRKLTNDTIDEYKASINRQIADLDARILHLQTLSSGGSADFEERIKEVISSVNSALKERIETISLNQGATSASIAQLKIQKQQLKQEIYELNELFMLAKAESSGRITAEMNSRIETEEALRFELEKLRETIPKEIVNKTDLEKVKSTARKLAESMQTIKTVLGMKIQSEQNLRIEEIKHHQEELTQLKSLIEPLVFKASARDSDDADKPTTDPDPDPDPTHPWDEDKKDEPEI 752
BLAST of neurofilament heavy polypeptide isoform X5 vs. Planmine SMEST
Match: SMESG000058734.1 (SMESG000058734.1) HSP 1 Score: 128.642 bits (322), Expect = 2.004e-30 Identity = 162/677 (23.93%), Postives = 342/677 (50.52%), Query Frame = 3 Query: 60 NSEEMINGFRSKYSTLPKISEFSNTDLIPYNEKNMSSSSPDSIERINSLETRLSITEKSNRALLDEVVRLHNEFRTTSKQYEDAFKEEKRVRSFIENHWKQSQEQIKDLELRLRSTEDLLNQERYQIRDLVNQSKSVEESMFTSKKDTSLLNERYI---SKLAQLEREMETLNDNRNKIERISFQLVDEMRAIKSKLESQGFDFHAVTHELRNKSKKLEDEYQQNLDVVKKQLSRNDNS----ITDSMYRPAVDQKLAEMKDYITQIRTWFDDEVNERRILEKTIMSKFTEISHAMSEQTRIRDEAIRQIQYLQRERDHKIETERMLIQNKIGEITEQINSRVLEKDLRLREDQLKRQTELEKLMRSEQXXXXXXXXXXXXXXXXXXXAMRQLQLDELNSIKDSFRYDKIKYVESIKRLDESLSLLERQIDENKQEITKIITAEVKARSNSEKLFKERYTELEEKIMAATSSLQHALSGVFDKSMPNN--DKIRKLTNDTIDEYKASINRQIADLDARILHLQTLSSGGSADFEERIKEVISSVNSALKERIETISLNQGATSASIAXXXXXXXXXXXXXXXXNELFMLAKAESSGRITAEMNSRIETEEALRFELEKLRETI-PKEIVNKTDLEKVKSTARKLAESMQTIKTVLGMKIQSEQNLRIEEIKHHQEEL 2060 NS E++ F+S LP I + +NEK+ S P +RI+ LE + E +N L++ V +L SK E +++ S I ++ LE RL+ E L E M K+ L + + ++L + EM+ +N ++++E + +L +EM +K+++ QG + +++ +K+K+L +EY NLD + ++ + + S+ + +K I I+ +++ + E + + +E++ +S++ RIR+ IR++ + ++ H ++ RM++ N + + S+ ++++ +R ++ +E EKL+ +E+E R S E++I +E Q + +N I+ + K E+++++ L+E+ DE ++ +ITAE++AR K LEEKI AAT+++Q A+SG+ ++ D+++++T+ I +++ ++R D+D+++ L S + + E RI + S +++ ++E + ++ Q ++A + +++ + + QE+ ++ ++E ++T E + RI+ +R ++E L+ + + V + D++K+ + RKLAE++Q+IK+ +GMKIQSEQ +R+ +IK Q E+ Sbjct: 3 NSSEIVTKFQS---ILPPIIQTKQ-----FNEKSEGLSIP---QRISMLEEKSKNFEMANFKLIEMVFQLKKALEA-SKPGEYGNQQDSPSLSGI----------VQQLENRLKKVERL-----------------SENKMAPLNKEIDLYDNSFSQLSNRLITINDEMDNMNTEKSRLENLIIKLTEEMFLLKNQIVIQGDLLASTSNQYNSKTKRLHNEYLNNLDSITDKVVYTQETARQIVNSSISHEEFIEAFNSLKHDIKNIKMKLEEQTHIYSSSESNLAFRVSELAQKLSDERRIREVEIRRLDLVCQDAFHTQDSTRMILDNHFTGLLSESMSKQMDRETSMRITTNQKISEFEKLLINEKELRTSKEKDIHARINDVMERATTHQHELMNQIRQHLDQNHNKTNETVQQIVTGQRLIEQSFDETLRKYFLVITAEIEARKKLHGAVKTDVMILEEKIRAATAAMQLAVSGLANRIQNKTEVDELKQITDKRICDFQLYMSRNFTDIDSQLQILAGQISTINLNVETRIAQATSDLSTEVRETLSSVISWQANSTAHLKEMQAVRVSVMQELAKMQLTLNHIESEIPSQMTIESDERIQAIGDIRHQIESLKIVMNTQPAVKEMDIDKIHESIRKLAETLQSIKSTMGMKIQSEQEMRLHQIKDLQTEM 640 The following BLAST results are available for this feature:
BLAST of neurofilament heavy polypeptide isoform X5 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of neurofilament heavy polypeptide isoform X5 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of neurofilament heavy polypeptide isoform X5 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of neurofilament heavy polypeptide isoform X5 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of neurofilament heavy polypeptide isoform X5 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of neurofilament heavy polypeptide isoform X5 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of neurofilament heavy polypeptide isoform X5 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of neurofilament heavy polypeptide isoform X5 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of neurofilament heavy polypeptide isoform X5 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of neurofilament heavy polypeptide isoform X5 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of neurofilament heavy polypeptide isoform X5 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of neurofilament heavy polypeptide isoform X5 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of neurofilament heavy polypeptide isoform X5 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of neurofilament heavy polypeptide isoform X5 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30017759 ID=SMED30017759|Name=neurofilament heavy polypeptide isoform X5|organism=Schmidtea mediterranea sexual|type=transcript|length=2366bpback to top protein sequence of SMED30017759-orf-1 >SMED30017759-orf-1 ID=SMED30017759-orf-1|Name=SMED30017759-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=768bp MSHLNDNNSEEMINGFRSKYSTLPKISEFSNTDLIPYNEKNMSSSSPDSIback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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