SMED30017644

Overview
NameSMED30017644
Smed IDSMED30017644
Length (bp)3647
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30017644 (SMED30017644) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30017644 (SMED30017644) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30017644

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
reproductive organSMED30017644SMESG000062919.1 SMESG000062918.1 Contig41855newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30017644SMESG000062919.1 SMESG000062918.1 Contig41855uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30017644 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.005701:19397..23043 -18235
Homology
[Close]
BLAST of SMED30017644 vs. TrEMBL
Match: A0A267G2L3 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig031710g1 PE=4 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 7.899e-23
Identity = 62/188 (32.98%), Postives = 102/188 (54.26%), Query Frame = 3 
Query:   48 QRFSMSRLSKEHQLGTYDSGDNRIYGEKISAEFIMCINDLGFGS-IMHDSRTRAATKKTNCHIEVTPRILNKRVNLYRWIKYAIIKITGPDEASLNQCLRLLEKHFPIFQQRKEYSRRANVTIFTNDLQIPDNAPGSTIIMRSGSTMSSCQGLVVRSPFEPDNKRSLVKSPWKISNPEKRGRYFSTLL 608
            ++ S+  L KE  +     G   ++ + +  EF++ + D    + ++  S+ RA  ++T C IEVT RILN+RV  +RW+KY ++ I GP   +++QC RL+ K FP ++ RKEY   A V +F  +   PDN        R+G+T      + +++PF PD  R L  +PWK ++     R F  +L
Sbjct:   67 KKLSIGHLQKEGSV----IGCMNVFADVMKREFVVLMTDSVIEAFLIEPSQFRAIARRTGCEIEVTRRILNRRVGAHRWVKYLVLTIKGPTCTAIDQCDRLMVKVFPPYKVRKEYLEPAPVALFVKE-SYPDNTQLYFNFQRTGATADRLGDMRLQTPFGPDPYRPLENTPWKYAD----WRLFRGML 245
[Close]
BLAST of SMED30017644 vs. TrEMBL
Match: A0A267GF12 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig017805g1 PE=4 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 8.220e-23
Identity = 62/188 (32.98%), Postives = 102/188 (54.26%), Query Frame = 3 
Query:   48 QRFSMSRLSKEHQLGTYDSGDNRIYGEKISAEFIMCINDLGFGS-IMHDSRTRAATKKTNCHIEVTPRILNKRVNLYRWIKYAIIKITGPDEASLNQCLRLLEKHFPIFQQRKEYSRRANVTIFTNDLQIPDNAPGSTIIMRSGSTMSSCQGLVVRSPFEPDNKRSLVKSPWKISNPEKRGRYFSTLL 608
            ++ S+  L KE  +     G   ++ + +  EF++ + D    + ++  S+ RA  ++T C IEVT RILN+RV  +RW+KY ++ I GP   +++QC RL+ K FP ++ RKEY   A V +F  +   PDN        R+G+T      + +++PF PD  R L  +PWK ++     R F  +L
Sbjct:   69 KKLSIGHLQKEGSV----IGCMNVFADVMKREFVVLMTDSVIEAFLIEPSQFRAIARRTGCEIEVTRRILNRRVGAHRWVKYLVLTIKGPTCTAIDQCDRLMVKVFPPYKVRKEYLEPAPVALFVKE-SYPDNTQLYFNFQRTGATADRLGDMRLQTPFGPDPYRPLENTPWKYAD----WRLFRGML 247
[Close]
BLAST of SMED30017644 vs. TrEMBL
Match: A0A267EC94 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig019621g1 PE=4 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 8.633e-23
Identity = 62/188 (32.98%), Postives = 102/188 (54.26%), Query Frame = 3 
Query:   48 QRFSMSRLSKEHQLGTYDSGDNRIYGEKISAEFIMCINDLGFGS-IMHDSRTRAATKKTNCHIEVTPRILNKRVNLYRWIKYAIIKITGPDEASLNQCLRLLEKHFPIFQQRKEYSRRANVTIFTNDLQIPDNAPGSTIIMRSGSTMSSCQGLVVRSPFEPDNKRSLVKSPWKISNPEKRGRYFSTLL 608
            ++ S+  L KE  +     G   ++ + +  EF++ + D    + ++  S+ RA  ++T C IEVT RILN+RV  +RW+KY ++ I GP   +++QC RL+ K FP ++ RKEY   A V +F  +   PDN        R+G+T      + +++PF PD  R L  +PWK ++     R F  +L
Sbjct:   71 KKLSIGHLQKEGSV----IGCMNVFADVMKREFVVLMTDSVIEAFLIEPSQFRAIARRTGCEIEVTRRILNRRVGAHRWVKYLVLTIKGPTCTAIDQCDRLMVKVFPPYKVRKEYLEPAPVALFVKE-SYPDNTQLYFNFQRTGATADRLGDMRLQTPFGPDPYRPLENTPWKYAD----WRLFRGML 249
[Close]
BLAST of SMED30017644 vs. TrEMBL
Match: A0A1I8IV63 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.498e-21
Identity = 68/206 (33.01%), Postives = 106/206 (51.46%), Query Frame = 3 
Query:   48 QRFSMSRLSKEHQLGTYDS-----GDNR-------------IYGEKISAEFIMCINDLGFGS-IMHDSRTRAATKKTNCHIEVTPRILNKRVNLYRWIKYAIIKITGPDEASLNQCLRLLEKHFPIFQQRKEYSRRANVTIFTNDLQIPDNAPGSTIIMRSGSTMSSCQGLVVRSPFEPDNKRSLVKSPWKISNPEKRGRYFSTLL 608
            Q+   SR SK+  L   DS     GD R             ++ + +  EF++ + D    + ++  S+ RA  ++T C IEVT RILN+RV  +RW+KY ++ I GP   +++QC RL+ K FP ++ RKEY   A V +F  +   PDN        R+G+T      + +++PF PD  R L  +PWK ++     R F  +L
Sbjct:  133 QQRRASRASKDKLLTDSDSRDAGIGDKRNQPKEGSVIGCMNVFADVMKREFVVLMTDSVIEAFLIEPSQFRAIARRTGCEIEVTRRILNRRVGAHRWVKYLVLTIKGPTCTAIDQCDRLMVKVFPPYKVRKEYLEPAPVALFVKE-SYPDNTQLYFNFQRTGATADRLGDMRLQTPFGPDPYRPLENTPWKYAD----WRLFRGML 333
[Close]
BLAST of SMED30017644 vs. TrEMBL
Match: A0A183AP60 (Uncharacterized protein OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS8745 PE=4 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.333e-20
Identity = 48/113 (42.48%), Postives = 76/113 (67.26%), Query Frame = 3 
Query:  108 DNRIYGEKIS------AEFIMCINDLGFGSIMHDSRTRAATKKTNCHIEVTPRILNKRVNLYRWIKYAIIKITGPDEASLNQCLRLLEKHFPIFQQRKEYSRRANVTIFTNDL 428
            DN   GE++       +E+ + +      S++ + R R+AT KT C++EVT R+LN+R    +W +Y+I++ITGPD+ S++QC RLLE+  PI+QQR+EY RRA VT ++ +L
Sbjct:    3 DNSFVGEQLDPVYYVWSEYALGLRPSELASMLSNPRVRSATAKTRCNVEVTRRVLNRRQMSSQWARYSIVRITGPDDQSISQCNRLLERAVPIYQQRREYPRRAPVTYYSKNL 115
[Close]
BLAST of SMED30017644 vs. Planmine SMEST
Match: SMESG000062919.1 (SMESG000062919.1)

HSP 1 Score: 2047.71 bits (5304), Expect = 0.000e+0
Identity = 1049/1049 (100.00%), Postives = 1049/1049 (100.00%), Query Frame = 3 
Query:   60 MSRLSKEHQLGTYDSGDNRIYGEKISAEFIMCINDLGFGSIMHDSRTRAATKKTNCHIEVTPRILNKRVNLYRWIKYAIIKITGPDEASLNQCLRLLEKHFPIFQQRKEYSRRANVTIFTNDLQIPDNAPGSTIIMRSGSTMSSCQGLVVRSPFEPDNKRSLVKSPWKISNPEKRGRYFSTLLCENICQPPLPPHVTSRNTETNSKIYSASSELDKTKINKNKLFGSMGTLSDSINPPISTPENPNMKSSQTAKDNEGSINNYTPISRHNEGLLRSGMDNKSTRNFELRVEIATVKSPGSYHNPINETYKSISNHSKFETFSDEATEDKMKLDYINQDEMLTMVPQERIKVLNQMNKKPISVICDKKQTAFASINRKSDEEHIVTPIETQSQNSANRLSPHSNFVSHKDSAEHHRPLFLRVPENVVNRSMSNETLNDLPHPKEISNYQVKLNHGLNEVQLXXXXXXXXXXXXXXXXXXEEPSLALKHNNQNQAMLEKHLISPSKADLLAARINLSYASSKSMPSGNMVVKLITSPSEEINSPVKYEDALHAEKDLKFIITSSSIMINQGGSNDLQESTPIKAIDPKSSTIRSMDGWYYVSKTSSEQAFNASEYSTPKVYEKIGKITQERTLNFNVVERKVSSDNQHNGEXXXXXXXXXXXXXXXXXXPVNQLINVSKESTGARGNIIGETRTIPNRPSSCNISESQLDRSSKLKVDPSKDFKPIHSKFDDEYKLNMVKTRDKNPNKDAKISNDYKFKATPYHPSPRDPRIKDIHDGQRNLRGSQNDARDSQKNGRGSQKDYRGTQKGIHGPESMKNNRNSVGKNGYHNDQDDRGRNDLYKNERLPIDSRATENQSLVPEISTSVVAEDFVNVGNIQIKDMSIEPRGSGTEISPVNFETITSAEIKISVQPXXXXXXXXXXXXXXXETPSGYYVNGINKPSVENQEAVNRAIEMRNDLDILKSISDRLTNPTDGNLILMFDGLDIFSTGHMSMVFKPGNVSGLPMDTDNQLVLFESSHYVITAGFRPGIRHGDDITKGVHAVSHTQMFHS 3206
            MSRLSKEHQLGTYDSGDNRIYGEKISAEFIMCINDLGFGSIMHDSRTRAATKKTNCHIEVTPRILNKRVNLYRWIKYAIIKITGPDEASLNQCLRLLEKHFPIFQQRKEYSRRANVTIFTNDLQIPDNAPGSTIIMRSGSTMSSCQGLVVRSPFEPDNKRSLVKSPWKISNPEKRGRYFSTLLCENICQPPLPPHVTSRNTETNSKIYSASSELDKTKINKNKLFGSMGTLSDSINPPISTPENPNMKSSQTAKDNEGSINNYTPISRHNEGLLRSGMDNKSTRNFELRVEIATVKSPGSYHNPINETYKSISNHSKFETFSDEATEDKMKLDYINQDEMLTMVPQERIKVLNQMNKKPISVICDKKQTAFASINRKSDEEHIVTPIETQSQNSANRLSPHSNFVSHKDSAEHHRPLFLRVPENVVNRSMSNETLNDLPHPKEISNYQVKLNHGLNEVQLSHSMSESITSSVSVKSRVEEPSLALKHNNQNQAMLEKHLISPSKADLLAARINLSYASSKSMPSGNMVVKLITSPSEEINSPVKYEDALHAEKDLKFIITSSSIMINQGGSNDLQESTPIKAIDPKSSTIRSMDGWYYVSKTSSEQAFNASEYSTPKVYEKIGKITQERTLNFNVVERKVSSDNQHNGESMIRDSQMSMSMSRDSRSPVNQLINVSKESTGARGNIIGETRTIPNRPSSCNISESQLDRSSKLKVDPSKDFKPIHSKFDDEYKLNMVKTRDKNPNKDAKISNDYKFKATPYHPSPRDPRIKDIHDGQRNLRGSQNDARDSQKNGRGSQKDYRGTQKGIHGPESMKNNRNSVGKNGYHNDQDDRGRNDLYKNERLPIDSRATENQSLVPEISTSVVAEDFVNVGNIQIKDMSIEPRGSGTEISPVNFETITSAEIKISVQPVSGVSKSIVISHSSIETPSGYYVNGINKPSVENQEAVNRAIEMRNDLDILKSISDRLTNPTDGNLILMFDGLDIFSTGHMSMVFKPGNVSGLPMDTDNQLVLFESSHYVITAGFRPGIRHGDDITKGVHAVSHTQMFHS
Sbjct:    1 MSRLSKEHQLGTYDSGDNRIYGEKISAEFIMCINDLGFGSIMHDSRTRAATKKTNCHIEVTPRILNKRVNLYRWIKYAIIKITGPDEASLNQCLRLLEKHFPIFQQRKEYSRRANVTIFTNDLQIPDNAPGSTIIMRSGSTMSSCQGLVVRSPFEPDNKRSLVKSPWKISNPEKRGRYFSTLLCENICQPPLPPHVTSRNTETNSKIYSASSELDKTKINKNKLFGSMGTLSDSINPPISTPENPNMKSSQTAKDNEGSINNYTPISRHNEGLLRSGMDNKSTRNFELRVEIATVKSPGSYHNPINETYKSISNHSKFETFSDEATEDKMKLDYINQDEMLTMVPQERIKVLNQMNKKPISVICDKKQTAFASINRKSDEEHIVTPIETQSQNSANRLSPHSNFVSHKDSAEHHRPLFLRVPENVVNRSMSNETLNDLPHPKEISNYQVKLNHGLNEVQLSHSMSESITSSVSVKSRVEEPSLALKHNNQNQAMLEKHLISPSKADLLAARINLSYASSKSMPSGNMVVKLITSPSEEINSPVKYEDALHAEKDLKFIITSSSIMINQGGSNDLQESTPIKAIDPKSSTIRSMDGWYYVSKTSSEQAFNASEYSTPKVYEKIGKITQERTLNFNVVERKVSSDNQHNGESMIRDSQMSMSMSRDSRSPVNQLINVSKESTGARGNIIGETRTIPNRPSSCNISESQLDRSSKLKVDPSKDFKPIHSKFDDEYKLNMVKTRDKNPNKDAKISNDYKFKATPYHPSPRDPRIKDIHDGQRNLRGSQNDARDSQKNGRGSQKDYRGTQKGIHGPESMKNNRNSVGKNGYHNDQDDRGRNDLYKNERLPIDSRATENQSLVPEISTSVVAEDFVNVGNIQIKDMSIEPRGSGTEISPVNFETITSAEIKISVQPVSGVSKSIVISHSSIETPSGYYVNGINKPSVENQEAVNRAIEMRNDLDILKSISDRLTNPTDGNLILMFDGLDIFSTGHMSMVFKPGNVSGLPMDTDNQLVLFESSHYVITAGFRPGIRHGDDITKGVHAVSHTQMFHS 1049
[Close]
BLAST of SMED30017644 vs. Planmine SMEST
Match: SMESG000026228.1 (SMESG000026228.1)

HSP 1 Score: 109.383 bits (272), Expect = 1.376e-23
Identity = 60/180 (33.33%), Postives = 97/180 (53.89%), Query Frame = 3 
Query:  132 ISAEFIMCINDLGFGSIMHDSRTRAATKKTNCHIEVTPRILNKRVNLYRWIKYAIIKITGPDEASLNQCLRLLEKHFPIFQQRKEYSRRAN-VTIFTNDLQIPDNAPGSTIIMRSGSTMSSCQGLVVRSPFEPDNKRSLVKSPWKISNPEKR---------------GRYFSTLLCENIC 623
            +  E+I+ + D        ++  RA   +TNC +E+T RILN+++  Y+ +KYAII+I G D+ S+ QC +LLE+  P+++QR+EY+++    T+F  D   PDNA       RSGST      ++++SP+E   KRS+    WK ++ + R                RYF   + E  C
Sbjct:   11 VVKEYIVFLKDEVVSVFFDENELRAIGNRTNCQVELTNRILNRKIGGYKIVKYAIIQIKGKDDLSVRQCNKLLEQRCPLYRQRQEYNKKKYCCTLFPED-STPDNASLYFQYQRSGSTTFQFGNILLKSPYESTIKRSMENCYWKTNDNDLRRTVVMPSTKQTENYFSRYFKGSVTEQEC 189
[Close]
BLAST of SMED30017644 vs. Planmine SMEST
Match: SMESG000045994.1 (SMESG000045994.1)

HSP 1 Score: 105.531 bits (262), Expect = 2.045e-22
Identity = 51/127 (40.16%), Postives = 78/127 (61.42%), Query Frame = 3 
Query:  150 MCINDLGFGSIMHDSRTRAATKKTNCHIEVTPRILNKRVNLYRWIKYAIIKITGPDEASLNQCLRLLEKHFPIFQQRKEYSRRAN-VTIFTNDLQIPDNAPGSTIIMRSGSTMSSCQGLVVRSPFEP 527
            M + D      + ++  R+   KTNC IE+T RILN++VN +++IKYAII+I G DE S+ QC RL+E   P ++ RKEY+++    TIF+ +  +PDN        R+G T      ++V+SP+EP
Sbjct:    1 MTLKDDSLKLFLDETNLRSIGVKTNCFIELTSRILNRKVNAFKFIKYAIIRIIGLDECSIRQCNRLIEHQCPPYRHRKEYNKKTECCTIFSQEF-VPDNVDLCFPFQRTGITTYQFGDILVKSPYEP 126
[Close]
BLAST of SMED30017644 vs. Planmine SMEST
Match: SMESG000012025.1 (SMESG000012025.1)

HSP 1 Score: 101.293 bits (251), Expect = 6.394e-22
Identity = 49/157 (31.21%), Postives = 90/157 (57.32%), Query Frame = 3 
Query:  123 GEKISAEFIMCINDLGFGSIMHDSRTRAATKKTNCHIEVTPRILNKRVNLYRWIKYAIIKITGPDEASLNQCLRLLEKHFPIFQQRKEYSRRANVTIFTNDLQIPDNAPGSTIIMRSGSTMSSCQGLVVRSPFEPDNKRSLVKSPWKISNPEKRGRY 593
            G  +  ++++   D   G  + +   ++   KTNC + +T R LN+ +    W ++ I+ ++G D+ ++N+C RL+E+  P F +R+ Y  ++ VT++TN+  IPDN+  +   MR GS  S   GL + SP+  +  R   ++PWKI++ E+ G Y
Sbjct:    8 GNYLLRQYLLEFGDELMGKFIENPILQSCGAKTNCRVYLTNRWLNRAIRPGIWKRFFIVNVSGEDQWAINRCNRLIERCIPEFHKRQVYKTKSKVTLYTNEW-IPDNSLITQAEMRIGSQRSQFGGLTIHSPYTNNMIRKSSQTPWKITSRERHGHY 163
[Close]
BLAST of SMED30017644 vs. Planmine SMEST
Match: SMESG000023793.1 (SMESG000023793.1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.176e-18
Identity = 43/152 (28.29%), Postives = 84/152 (55.26%), Query Frame = 3 
Query:  141 EFIMCINDLGFGSIMHDSRTRAATKKTNCHIEVTPRILNKRVNLYRWIKYAIIKITGPDEASLNQCLRLLEKHFPIFQQRKEYSRRANVTIFTNDLQIPDNAPGSTIIMRSGSTMSSCQGLVVRSPFEPDNKRSLVKS-PWKISNPEKRGRY 593
            E+++   D      ++D + ++A KK+ C +++ P+ +N+++    W+KYAI++I+GP + ++  C + +E  +P F  RK Y R++ V+ F  +  +PDN   S  + RS  T      + + S +  +N+     + PWKI+  EK G +
Sbjct:   23 EYLLPFKDCLVEHFINDRKIKSAEKKSGCQVKLLPKSINRKIRNAGWVKYAILQISGPSDNAIVSCTKAIETFYPNFVLRKPYERKSIVSFFIEN-GVPDNMNYSECVQRSAQTDICFHSMRLNSSYTLENRTDNPGTKPWKITPSEKFGLF 173
The following BLAST results are available for this feature:
BLAST of SMED30017644 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017644 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017644 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017644 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017644 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017644 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017644 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017644 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A267G2L37.899e-2332.98Uncharacterized protein (Fragment) OS=Macrostomum ... [more]
A0A267GF128.220e-2332.98Uncharacterized protein (Fragment) OS=Macrostomum ... [more]
A0A267EC948.633e-2332.98Uncharacterized protein (Fragment) OS=Macrostomum ... [more]
A0A1I8IV634.498e-2133.01Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A183AP602.333e-2042.48Uncharacterized protein OS=Echinostoma caproni OX=... [more]
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BLAST of SMED30017644 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017644 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017644 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017644 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017644 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017644 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000062919.10.000e+0100.00SMESG000062919.1[more]
SMESG000026228.11.376e-2333.33SMESG000026228.1[more]
SMESG000045994.12.045e-2240.16SMESG000045994.1[more]
SMESG000012025.16.394e-2231.21SMESG000012025.1[more]
SMESG000023793.13.176e-1828.29SMESG000023793.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30017644 ID=SMED30017644|Name=SMED30017644|organism=Schmidtea mediterranea sexual|type=transcript|length=3647bp
TTTCAAGCCAATACTACTAATTGATAAAATTCTTCGTTTTCTCATTTCAA
AGGTTTTCAATGTCTAGATTGTCGAAAGAACATCAGTTAGGTACTTATGA
TTCTGGGGATAATCGAATTTATGGAGAGAAAATTTCCGCGGAATTTATTA
TGTGTATCAATGATTTGGGATTTGGCTCGATCATGCATGATTCAAGGACT
CGTGCTGCTACTAAGAAAACTAATTGTCACATTGAAGTTACTCCACGAAT
TCTTAACAAAAGAGTCAATCTCTATCGATGGATAAAGTATGCGATTATTA
AAATAACAGGACCAGATGAAGCGTCATTGAATCAATGCTTAAGGTTATTG
GAAAAACACTTTCCAATTTTTCAACAGCGAAAAGAATATTCTCGTCGTGC
TAATGTGACAATTTTTACAAATGATTTACAAATTCCAGATAATGCTCCAG
GATCTACAATTATCATGAGGTCTGGATCTACAATGTCATCTTGTCAAGGA
CTTGTAGTTAGGAGTCCATTTGAACCTGATAATAAGCGTTCTCTTGTTAA
GTCGCCATGGAAAATTTCGAACCCCGAAAAGCGAGGTCGGTATTTTTCTA
CTTTATTGTGTGAAAATATCTGCCAGCCCCCTCTTCCTCCACACGTTACC
AGTAGAAATACGGAAACGAATTCCAAAATTTATTCGGCTAGTTCTGAGTT
AGATAAAACGAAAATTAACAAAAATAAACTATTTGGTTCTATGGGAACTT
TATCAGATTCGATCAATCCACCGATTTCCACGCCTGAAAATCCAAACATG
AAAAGTTCACAAACAGCTAAAGACAACGAAGGTTCAATTAACAATTATAC
ACCAATTTCCAGACATAACGAAGGTCTTCTAAGATCGGGGATGGACAATA
AAAGCACAAGAAATTTTGAGTTGCGAGTGGAAATTGCAACAGTTAAGTCA
CCAGGAAGCTATCACAATCCCATTAACGAGACATATAAGTCAATTTCCAA
TCACTCAAAATTTGAGACCTTTAGTGATGAGGCAACAGAAGACAAGATGA
AATTGGATTATATCAATCAGGATGAAATGCTAACTATGGTTCCACAAGAA
CGAATAAAGGTGTTAAATCAAATGAATAAAAAACCCATTTCAGTTATCTG
TGATAAAAAGCAGACAGCCTTTGCGTCAATTAACAGAAAAAGTGACGAGG
AACATATCGTTACACCAATTGAAACACAATCTCAAAATTCCGCTAACAGG
CTGAGTCCGCATTCTAATTTTGTGTCGCATAAAGATAGCGCTGAGCATCA
CCGCCCATTATTCTTACGTGTTCCGGAGAACGTAGTTAATCGCTCTATGT
CCAATGAAACACTTAACGATTTGCCACATCCAAAGGAAATAAGCAATTAT
CAAGTGAAATTAAACCATGGCCTAAATGAAGTGCAATTGTCGCATTCCAT
GTCGGAAAGTATAACCAGTTCTGTTAGTGTGAAATCGAGAGTGGAAGAAC
CGAGTTTAGCGCTGAAGCATAATAATCAAAATCAAGCTATGTTAGAAAAG
CATCTTATTTCTCCGTCGAAAGCGGATTTATTAGCTGCAAGAATCAATTT
GTCGTATGCTTCCAGCAAAAGTATGCCTTCGGGCAATATGGTTGTGAAAT
TAATCACCTCACCTTCGGAAGAAATAAATAGTCCAGTCAAGTATGAGGAT
GCGCTTCACGCAGAAAAGGATTTAAAATTTATAATAACCTCGAGTTCGAT
TATGATTAATCAAGGCGGGTCTAACGATCTTCAAGAGTCGACTCCTATTA
AAGCCATAGATCCAAAATCCTCTACTATTCGTTCGATGGATGGGTGGTAT
TATGTTTCGAAAACATCGTCTGAGCAAGCGTTTAATGCTTCAGAATATTC
CACTCCGAAAGTTTACGAAAAAATAGGCAAAATCACCCAAGAACGAACAC
TTAATTTCAATGTGGTGGAAAGAAAAGTATCATCTGACAATCAGCACAAT
GGTGAATCAATGATACGCGATTCCCAAATGAGTATGAGTATGTCAAGAGA
TAGCAGGAGTCCAGTTAATCAGTTAATCAACGTTTCAAAGGAGTCCACCG
GTGCTCGTGGTAATATAATCGGAGAAACTAGAACTATTCCAAACAGGCCA
TCAAGTTGTAATATTTCCGAAAGCCAACTGGACCGTAGCTCAAAACTAAA
AGTTGATCCTTCTAAAGACTTTAAACCTATACATTCGAAATTCGATGATG
AATATAAGCTTAATATGGTCAAGACTAGAGACAAAAATCCTAATAAAGAT
GCAAAAATATCCAATGACTACAAATTTAAAGCGACTCCTTATCATCCTTC
GCCAAGGGATCCTCGTATCAAGGATATTCACGATGGACAGAGAAACCTTC
GTGGTTCACAAAACGATGCTCGAGATTCACAGAAAAATGGCCGAGGATCA
CAGAAAGATTATCGAGGTACTCAAAAAGGAATCCACGGTCCTGAATCAAT
GAAAAATAATCGAAACTCTGTCGGTAAAAATGGATATCACAACGACCAAG
ACGACAGAGGTCGGAATGATTTATATAAAAATGAACGTTTACCCATTGAC
AGTCGAGCGACGGAAAACCAATCTCTAGTACCGGAAATCAGTACAAGTGT
TGTCGCTGAAGATTTTGTAAATGTGGGTAATATTCAAATCAAAGATATGA
GCATAGAACCAAGAGGAAGTGGCACAGAGATTTCTCCGGTGAATTTCGAA
ACGATTACTAGCGCCGAAATCAAAATCAGTGTTCAACCGGTTTCCGGAGT
CAGCAAGAGTATAGTGATATCACATTCCTCAATTGAAACTCCCAGTGGGT
ATTATGTCAATGGCATCAATAAGCCATCAGTGGAGAATCAGGAAGCCGTC
AATCGGGCAATTGAAATGAGAAATGATTTAGACATTTTAAAATCTATCTC
CGACAGACTTACCAATCCAACAGATGGTAATTTGATTCTGATGTTTGATG
GGCTGGACATATTCAGCACCGGCCATATGTCCATGGTTTTCAAGCCGGGA
AATGTCAGTGGGTTGCCAATGGATACCGATAATCAGTTGGTTCTTTTTGA
AAGCTCACATTATGTAATAACCGCAGGTTTTCGTCCAGGTATAAGGCATG
GTGATGACATAACTAAAGGTGTTCATGCTGTTTCCCATACTCAAATGTTC
CATTCGTGATATAGTTTAAACCTACGAATTTAGTTTCTAATAATAATACT
AATACTTATAATAATATTAATACTTGATAAAAAGCAGTTTTCCCTGATAA
TCGTGACAGGATTTTGGTTTTACGAATTGTGACCGCTGTGATTCGGTACG
ATTGTATTGTTGAAGCTAACGAAACGGTTAATCTCGTTGTATATGATGCT
ACCGTTACCTAGATATTTGATGAAAATGGCATCTGTGGAGACATTTATTT
ATCTATTACTTAGTTATTGTATAATGATTGTATAGAGTATGCCTAGTATC
TTACTGCTCAATAGCTTAACATTTCGGGTTCAATAATGTCAATTGCTCTC
GACATTTAAATAAAAACATGTGCGTTGGCACATATTTATTACATAGATTT
GAGTTTTCATTAATATGGATGTGTTTTTCCCCAATAACTATAAAGGA
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protein sequence of SMED30017644-orf-1

>SMED30017644-orf-1 ID=SMED30017644-orf-1|Name=SMED30017644-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1050bp
MSRLSKEHQLGTYDSGDNRIYGEKISAEFIMCINDLGFGSIMHDSRTRAA
TKKTNCHIEVTPRILNKRVNLYRWIKYAIIKITGPDEASLNQCLRLLEKH
FPIFQQRKEYSRRANVTIFTNDLQIPDNAPGSTIIMRSGSTMSSCQGLVV
RSPFEPDNKRSLVKSPWKISNPEKRGRYFSTLLCENICQPPLPPHVTSRN
TETNSKIYSASSELDKTKINKNKLFGSMGTLSDSINPPISTPENPNMKSS
QTAKDNEGSINNYTPISRHNEGLLRSGMDNKSTRNFELRVEIATVKSPGS
YHNPINETYKSISNHSKFETFSDEATEDKMKLDYINQDEMLTMVPQERIK
VLNQMNKKPISVICDKKQTAFASINRKSDEEHIVTPIETQSQNSANRLSP
HSNFVSHKDSAEHHRPLFLRVPENVVNRSMSNETLNDLPHPKEISNYQVK
LNHGLNEVQLSHSMSESITSSVSVKSRVEEPSLALKHNNQNQAMLEKHLI
SPSKADLLAARINLSYASSKSMPSGNMVVKLITSPSEEINSPVKYEDALH
AEKDLKFIITSSSIMINQGGSNDLQESTPIKAIDPKSSTIRSMDGWYYVS
KTSSEQAFNASEYSTPKVYEKIGKITQERTLNFNVVERKVSSDNQHNGES
MIRDSQMSMSMSRDSRSPVNQLINVSKESTGARGNIIGETRTIPNRPSSC
NISESQLDRSSKLKVDPSKDFKPIHSKFDDEYKLNMVKTRDKNPNKDAKI
SNDYKFKATPYHPSPRDPRIKDIHDGQRNLRGSQNDARDSQKNGRGSQKD
YRGTQKGIHGPESMKNNRNSVGKNGYHNDQDDRGRNDLYKNERLPIDSRA
TENQSLVPEISTSVVAEDFVNVGNIQIKDMSIEPRGSGTEISPVNFETIT
SAEIKISVQPVSGVSKSIVISHSSIETPSGYYVNGINKPSVENQEAVNRA
IEMRNDLDILKSISDRLTNPTDGNLILMFDGLDIFSTGHMSMVFKPGNVS
GLPMDTDNQLVLFESSHYVITAGFRPGIRHGDDITKGVHAVSHTQMFHS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002089reproductive organ
Vocabulary: molecular function
TermDefinition
GO:0016301kinase activity
Vocabulary: biological process
TermDefinition
GO:0016310phosphorylation
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 241..264
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 738..837
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 810..824
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 688..708
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 688..718
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 738..753
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 760..782