SMED30017594
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30017594 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 5
Homology
BLAST of SMED30017594 vs. TrEMBL
Match: A0A1I8IQX4 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 1.638e-6 Identity = 48/166 (28.92%), Postives = 83/166 (50.00%), Query Frame = 2 Query: 224 KSAYHNIDCVILVLCSIGDCLAMIGATTTNTVWNSTLRHNFKNFDYLFTNEFQTTKAFNIISAFSGLCALISGILKMKIKPMAERKXXXXXXXXXXXXXXXXXXXGIAIWGDLIWHGKFRLGATKWKKSTSNRMSFGWGFWVMVSAAVFLFLSNVCHLIRQDCKQK 721 + + +D ILV+C G +++ + +T W + D+ +F TKA II + +L GI++M++ A K ++F+S L+ SF L+ +A+WGD I HG+ ++ +R W +WV V+AAV FL+ + ++IR D K Sbjct: 2 RPSVGTVDKSILVICGCGLAASIVAISRLST-WPIVMEE-----DHSGEADFTKTKAAFIIGLMASAASLGIGIVRMRLDSCAGSKTLRMMFVSSLLASFLCLLVTVAVWGDFINHGE---------RNALHRNVLPWSYWVAVAAAVLQFLAFLLYIIRSDFKDS 152
BLAST of SMED30017594 vs. Planmine SMEST
Match: SMESG000065112.1 (SMESG000065112.1) HSP 1 Score: 438.343 bits (1126), Expect = 1.663e-155 Identity = 255/259 (98.46%), Postives = 257/259 (99.23%), Query Frame = 2 Query: 11 ILYVPEMMKPSLIDDKKQSTVSLGIDLKGIIQQSSQRASRNXXXXXXXXXXXXXXXXXXEISANRSMVELEKSAYHNIDCVILVLCSIGDCLAMIGATTTNTVWNSTLRHNFKNFDYLFTNEFQTTKAFNIISAFSGLCALISGILKMKIKPMAERKXXXXXXXXXXXXXXXXXXXGIAIWGDLIWHGKFRLGATKWKKSTSNRMSFGWGFWVMVSAAVFLFLSNVCHLIRQDCKQKVDFNSKSDDDSLSIPNEGIRKK 787 + +PEMMKPSLIDDKKQSTVSLGIDLKGIIQQSSQRASRNVSLSGLSILLLPLPVPGLEISANRSMVELEKSAYHNIDCVILVLCSIGDCLAMIGATTTNTVWNSTLRHNFKNFDYLFTNEFQTTKAFNIISAFSGLCALISGILKMKIKPMAERKFFHILFISMLIISFFSCLIGIAIWGDLIWHGKFRLGATKWKKSTSNRMSFGWGFWVMVSAAVFLFLSNVCHLIRQDCKQKVDFNSKSDDDSLSIPNEGIRKK Sbjct: 111 LFTIPEMMKPSLIDDKKQSTVSLGIDLKGIIQQSSQRASRNVSLSGLSILLLPLPVPGLEISANRSMVELEKSAYHNIDCVILVLCSIGDCLAMIGATTTNTVWNSTLRHNFKNFDYLFTNEFQTTKAFNIISAFSGLCALISGILKMKIKPMAERKFFHILFISMLIISFFSCLIGIAIWGDLIWHGKFRLGATKWKKSTSNRMSFGWGFWVMVSAAVFLFLSNVCHLIRQDCKQKVDFNSKSDDDSLSIPNEGIRKK 369 HSP 2 Score: 188.348 bits (477), Expect = 2.254e-57 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 2 Query: 32 MKPSLIDDKKQSTVSLGIDLKGIIQQSSQRASRNXXXXXXXXXXXXXXXXXXEISANRSMVELEKSAYHNIDCVILVLCSIGDCLAMIGATTTNTVWNSTLRHNFKNFDYLFT 370 MKPSLIDDKKQSTVSLGIDLKGIIQQSSQRASRNVSLSGLSILLLPLPVPGLEISANRSMVELEKSAYHNIDCVILVLCSIGDCLAMIGATTTNTVWNSTLRHNFKNFDYLFT Sbjct: 1 MKPSLIDDKKQSTVSLGIDLKGIIQQSSQRASRNVSLSGLSILLLPLPVPGLEISANRSMVELEKSAYHNIDCVILVLCSIGDCLAMIGATTTNTVWNSTLRHNFKNFDYLFT 113
BLAST of SMED30017594 vs. Planmine SMEST
Match: SMESG000065112.1 (SMESG000065112.1) HSP 1 Score: 438.343 bits (1126), Expect = 1.799e-155 Identity = 255/259 (98.46%), Postives = 257/259 (99.23%), Query Frame = 2 Query: 11 ILYVPEMMKPSLIDDKKQSTVSLGIDLKGIIQQSSQRASRNXXXXXXXXXXXXXXXXXXEISANRSMVELEKSAYHNIDCVILVLCSIGDCLAMIGATTTNTVWNSTLRHNFKNFDYLFTNEFQTTKAFNIISAFSGLCALISGILKMKIKPMAERKXXXXXXXXXXXXXXXXXXXGIAIWGDLIWHGKFRLGATKWKKSTSNRMSFGWGFWVMVSAAVFLFLSNVCHLIRQDCKQKVDFNSKSDDDSLSIPNEGIRKK 787 + +PEMMKPSLIDDKKQSTVSLGIDLKGIIQQSSQRASRNVSLSGLSILLLPLPVPGLEISANRSMVELEKSAYHNIDCVILVLCSIGDCLAMIGATTTNTVWNSTLRHNFKNFDYLFTNEFQTTKAFNIISAFSGLCALISGILKMKIKPMAERKFFHILFISMLIISFFSCLIGIAIWGDLIWHGKFRLGATKWKKSTSNRMSFGWGFWVMVSAAVFLFLSNVCHLIRQDCKQKVDFNSKSDDDSLSIPNEGIRKK Sbjct: 112 LFTIPEMMKPSLIDDKKQSTVSLGIDLKGIIQQSSQRASRNVSLSGLSILLLPLPVPGLEISANRSMVELEKSAYHNIDCVILVLCSIGDCLAMIGATTTNTVWNSTLRHNFKNFDYLFTNEFQTTKAFNIISAFSGLCALISGILKMKIKPMAERKFFHILFISMLIISFFSCLIGIAIWGDLIWHGKFRLGATKWKKSTSNRMSFGWGFWVMVSAAVFLFLSNVCHLIRQDCKQKVDFNSKSDDDSLSIPNEGIRKK 370 HSP 2 Score: 190.274 bits (482), Expect = 3.621e-58 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 2 Query: 29 MMKPSLIDDKKQSTVSLGIDLKGIIQQSSQRASRNXXXXXXXXXXXXXXXXXXEISANRSMVELEKSAYHNIDCVILVLCSIGDCLAMIGATTTNTVWNSTLRHNFKNFDYLFT 370 MMKPSLIDDKKQSTVSLGIDLKGIIQQSSQRASRNVSLSGLSILLLPLPVPGLEISANRSMVELEKSAYHNIDCVILVLCSIGDCLAMIGATTTNTVWNSTLRHNFKNFDYLFT Sbjct: 1 MMKPSLIDDKKQSTVSLGIDLKGIIQQSSQRASRNVSLSGLSILLLPLPVPGLEISANRSMVELEKSAYHNIDCVILVLCSIGDCLAMIGATTTNTVWNSTLRHNFKNFDYLFT 114
BLAST of SMED30017594 vs. Planmine SMEST
Match: SMESG000065112.1 (SMESG000065112.1) HSP 1 Score: 377.481 bits (968), Expect = 8.672e-132 Identity = 231/259 (89.19%), Postives = 233/259 (89.96%), Query Frame = 2 Query: 11 ILYVPEMMKPSLIDDKKQSTVSLGIDLKGIIQQSSQRASRNXXXXXXXXXXXXXXXXXXEISANRSMVELEKSAYHNIDCVILVLCSIGDCLAMIGATTTNTVWNSTLRHNFKNFDYLFTNEFQTTKAFNIISAFSGLCALISGILKMKIKPMAERKXXXXXXXXXXXXXXXXXXXGIAIWGDLIWHGKFRLGATKWKKSTSNRMSFGWGFWVMVSAAVFLFLSNVCHLIRQDCKQKVDFNSKSDDDSLSIPNEGIRKK 787 + +PEMMKPSLIDDKKQSTVSLGIDLKGIIQQSSQRASRNVSLSGLSILLLPLPVPGLEISANRSMVELEKSAYHNIDCVILVLCSIGDCLAMIGATTTNTVWNSTLRHNFKNFDYLFT ILKMKIKPMAERKFFHILFISMLIISFFSCLIGIAIWGDLIWHGKFRLGATKWKKSTSNRMSFGWGFWVMVSAAVFLFLSNVCHLIRQDCKQKVDFNSKSDDDSLSIPNEGIRKK Sbjct: 112 LFTIPEMMKPSLIDDKKQSTVSLGIDLKGIIQQSSQRASRNVSLSGLSILLLPLPVPGLEISANRSMVELEKSAYHNIDCVILVLCSIGDCLAMIGATTTNTVWNSTLRHNFKNFDYLFTR-----------------------ILKMKIKPMAERKFFHILFISMLIISFFSCLIGIAIWGDLIWHGKFRLGATKWKKSTSNRMSFGWGFWVMVSAAVFLFLSNVCHLIRQDCKQKVDFNSKSDDDSLSIPNEGIRKK 347 HSP 2 Score: 190.274 bits (482), Expect = 2.522e-58 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 2 Query: 29 MMKPSLIDDKKQSTVSLGIDLKGIIQQSSQRASRNXXXXXXXXXXXXXXXXXXEISANRSMVELEKSAYHNIDCVILVLCSIGDCLAMIGATTTNTVWNSTLRHNFKNFDYLFT 370 MMKPSLIDDKKQSTVSLGIDLKGIIQQSSQRASRNVSLSGLSILLLPLPVPGLEISANRSMVELEKSAYHNIDCVILVLCSIGDCLAMIGATTTNTVWNSTLRHNFKNFDYLFT Sbjct: 1 MMKPSLIDDKKQSTVSLGIDLKGIIQQSSQRASRNVSLSGLSILLLPLPVPGLEISANRSMVELEKSAYHNIDCVILVLCSIGDCLAMIGATTTNTVWNSTLRHNFKNFDYLFT 114
BLAST of SMED30017594 vs. Planmine SMEST
Match: SMESG000023295.1 (SMESG000023295.1) HSP 1 Score: 48.9062 bits (115), Expect = 1.033e-6 Identity = 48/194 (24.74%), Postives = 89/194 (45.88%), Query Frame = 2 Query: 221 EKSAYHNIDCVILVLCSIGDCLAMIGA------TTTNTVWNSTLRHNFKNFDYLFTNEFQTTKAFNIISAFSGLCALISGILKMKIKPMAERKXXXXXXXXXXXXXXXXXXXGIAIWGDLIWHGKFRLGATK----------------------WKKSTSNRMSFGWGFWVMVSAAVFLFLSNVCHLIRQDCKQ 718 +K +++ I ++ IG L +IG + + +WN N FD +E+ +T+ F I S I I ++K K + E + ++I +L +SF S L+ + IWGDL+ H K +G K KS +N+ + GW +W+ V+ + LF++N+ +++D ++ Sbjct: 30 KKKPKNHVHLWISIILGIGSFLIIIGVGGSARWSEESGIWN----FNIHEFD---LDEYNSTRFFAIFGMLSSTSVFILSICQIKFKQINENQTADHIYIILLTLSFISILLALWIWGDLVRHLK-EVGLKKKNPFNKKDTYIYELYELFSKSTQDKSLANKWNIGWSYWLTVAGELNLFVANLLFFMKKDFEK 215
BLAST of SMED30017594 vs. Planmine SMEST
Match: SMESG000023295.1 (SMESG000023295.1) HSP 1 Score: 48.9062 bits (115), Expect = 1.059e-6 Identity = 48/194 (24.74%), Postives = 89/194 (45.88%), Query Frame = 2 Query: 221 EKSAYHNIDCVILVLCSIGDCLAMIGA------TTTNTVWNSTLRHNFKNFDYLFTNEFQTTKAFNIISAFSGLCALISGILKMKIKPMAERKXXXXXXXXXXXXXXXXXXXGIAIWGDLIWHGKFRLGATK----------------------WKKSTSNRMSFGWGFWVMVSAAVFLFLSNVCHLIRQDCKQ 718 +K +++ I ++ IG L +IG + + +WN N FD +E+ +T+ F I S I I ++K K + E + ++I +L +SF S L+ + IWGDL+ H K +G K KS +N+ + GW +W+ V+ + LF++N+ +++D ++ Sbjct: 16 KKKPKNHVHLWISIILGIGSFLIIIGVGGSARWSEESGIWN----FNIHEFD---LDEYNSTRFFAIFGMLSSTSVFILSICQIKFKQINENQTADHIYIILLTLSFISILLALWIWGDLVRHLK-EVGLKKKNPFNKKDTYIYELYELFSKSTQDKSLANKWNIGWSYWLTVAGELNLFVANLLFFMKKDFEK 201 The following BLAST results are available for this feature:
BLAST of SMED30017594 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30017594 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30017594 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30017594 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30017594 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30017594 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30017594 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30017594 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 1
BLAST of SMED30017594 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30017594 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30017594 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30017594 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30017594 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30017594 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30017594 ID=SMED30017594|Name=SMED30017594|organism=Schmidtea mediterranea sexual|type=transcript|length=839bpback to top protein sequence of SMED30017594-orf-1 >SMED30017594-orf-1 ID=SMED30017594-orf-1|Name=SMED30017594-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=254bp MMKPSLIDDKKQSTVSLGIDLKGIIQQSSQRASRNVSLSGLSILLLPLPVback to top Annotated Terms
The following terms have been associated with this transcript:
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