DDE_Tnp_1_7 domain-containing protein

Overview
NameDDE_Tnp_1_7 domain-containing protein
Smed IDSMED30017568
Length (bp)2255
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of DDE_Tnp_1_7 domain-containing protein (SMED30017568) t-SNE clustered cells

Violin plots show distribution of expression levels for DDE_Tnp_1_7 domain-containing protein (SMED30017568) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of DDE_Tnp_1_7 domain-containing protein (SMED30017568) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for DDE_Tnp_1_7 domain-containing protein (SMED30017568) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30017568

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30017568 SmedASXL_061598SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30017568 SmedASXL_061598SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of DDE_Tnp_1_7 domain-containing protein vs. Ensembl Zebrafish
Match: pgbd4 (piggyBac transposable element derived 4 [Source:ZFIN;Acc:ZDB-GENE-091204-417])

HSP 1 Score: 58.5362 bits (140), Expect = 2.382e-8
Identity = 42/172 (24.42%), Postives = 76/172 (44.19%), Query Frame = 3 
Query:  816 TVLDFFQMHFTDELTMEITKQTNDYAGLQLANRPLCRYSIWTKWKAVSSAEMKVYFGVILNMTINDIPNVFDFRCF*FSKDW----TNTMPFFVDVFSRMRFLQIQWILHLSLPVPVGAVVIRSD------------KLEIVVNTVQDIC*HKFIQDQPITIDESTIGLKRR 1283
            +VL +F++ F+  +  +I   +N +  ++   R         KWK ++ A++K +  +++ M I         +CF     W      ++P+   + SR++FL I W LHLS P     V   +D            K++ +   ++D C   F   Q I+IDE  +  K R
Sbjct:  153 SVLQYFELFFSQPVMQKIVDHSNIFGAMRHEARK-------RKWKDITVADLKSFIAMVIYMGI--------VKCFNLQDYWRMSDVYSLPYPAKIMSRIKFLTISWALHLSDP----KVDAENDKKRGTPQYDPLCKIKPLYQDIRDACKASFHPHQNISIDERMVASKAR 305
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BLAST of DDE_Tnp_1_7 domain-containing protein vs. Ensembl Zebrafish
Match: pgbd4 (piggyBac transposable element derived 4 [Source:ZFIN;Acc:ZDB-GENE-091204-417])

HSP 1 Score: 58.5362 bits (140), Expect = 2.540e-8
Identity = 42/172 (24.42%), Postives = 76/172 (44.19%), Query Frame = 3 
Query:  816 TVLDFFQMHFTDELTMEITKQTNDYAGLQLANRPLCRYSIWTKWKAVSSAEMKVYFGVILNMTINDIPNVFDFRCF*FSKDW----TNTMPFFVDVFSRMRFLQIQWILHLSLPVPVGAVVIRSD------------KLEIVVNTVQDIC*HKFIQDQPITIDESTIGLKRR 1283
            +VL +F++ F+  +  +I   +N +  ++   R         KWK ++ A++K +  +++ M I         +CF     W      ++P+   + SR++FL I W LHLS P     V   +D            K++ +   ++D C   F   Q I+IDE  +  K R
Sbjct:  153 SVLQYFELFFSQPVMQKIVDHSNIFGAMRHEARK-------RKWKDITVADLKSFIAMVIYMGI--------VKCFNLQDYWRMSDVYSLPYPAKIMSRIKFLTISWALHLSDP----KVDAENDKKRGTPQYDPLCKIKPLYQDIRDACKASFHPHQNISIDERMVASKAR 305
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BLAST of DDE_Tnp_1_7 domain-containing protein vs. Ensembl Zebrafish
Match: CABZ01069162.1 (pep scaffold:GRCz11:KN149950.1:74:5493:1 gene:ENSDARG00000115161.1 transcript:ENSDART00000191202.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CABZ01069162.1)

HSP 1 Score: 50.8322 bits (120), Expect = 5.872e-6
Identity = 41/162 (25.31%), Postives = 70/162 (43.21%), Query Frame = 3 
Query:  822 LDFFQMHFTDELTMEITKQTNDYAGLQLANRPLCRYSIWTKWKAVSSAEMKVYFGVILNMTINDIPNVFDFRCF*FSKDWTNTMPFFVDVFSRMRFLQIQWILHLSLPV--------PVGAVVIRSDKLEIVVNTVQDIC*HKFIQDQPITIDESTIGLKRR 1283
            L  FQ+ FT  +   I + +N YA  Q       R      WK +S  ++K Y  +++ M +  +  + D+    + +    ++P    + S  +FL I   LHLS PV           A   R  K++ + + ++D C   +   Q I+IDE  +  K R
Sbjct:  222 LQLFQLFFTPSVLQTIMQHSNAYATKQ-------RQGTDKSWKNISVEDLKSYLALVIFMGLLKVCALTDY----WRRSDVYSVPLPTRIMSCRKFLNIANALHLSDPVDDEANEGRKGTAAYDRLGKIKPLYDNIRDACRAFYHPGQNISIDERMVASKAR 372
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BLAST of DDE_Tnp_1_7 domain-containing protein vs. Ensembl Xenopus
Match: dlgap5 (discs large homolog associated protein 5 [Source:Xenbase;Acc:XB-GENE-481549])

HSP 1 Score: 60.077 bits (144), Expect = 5.720e-9
Identity = 46/163 (28.22%), Postives = 73/163 (44.79%), Query Frame = 3 
Query:  822 LDFFQMHFTDELTMEITKQTNDYAGLQLANRPLCRYSIWTKWKAVSSAEMKVYFGVILNMTINDIPNVFDFRCF*FSKDWTNT----MPFFVDVFSRMRFLQIQWILHL-----SLPVPVGAVVIRSDKLEIVVNTVQDIC*HKFIQDQPITIDESTIGLKRR 1283
            +DFFQ++ T+ +  ++   TN YA   LA+ PL RY+    W     AEMK + G+ L M +    ++  +        W  T    +P F     R R+  +   LH      ++P P      R  KL  ++N++ + C   +   Q I IDES +  K R
Sbjct:  114 VDFFQLYITEAILQDMVLYTNLYAEQYLAHNPLPRYARAQAWHPTDIAEMKKFLGLTLAMGLIKANSLESY--------WDTTTVLSIPVFSATMPRNRYQLLLRFLHFNNNATAVP-PYVPGHDRLHKLRPLINSLSERCGEVYTPSQNICIDESLLLFKGR 267
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BLAST of DDE_Tnp_1_7 domain-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000024424.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:KV461698.1:3132:4553:-1 gene:ENSXETG00000015301.1 transcript:ENSXETT00000024424.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 59.3066 bits (142), Expect = 1.104e-8
Identity = 46/163 (28.22%), Postives = 72/163 (44.17%), Query Frame = 3 
Query:  822 LDFFQMHFTDELTMEITKQTNDYAGLQLANRPLCRYSIWTKWKAVSSAEMKVYFGVILNMTINDIPNVFDFRCF*FSKDWTNT----MPFFVDVFSRMRFLQIQWILHL-----SLPVPVGAVVIRSDKLEIVVNTVQDIC*HKFIQDQPITIDESTIGLKRR 1283
            +DFFQ++ T+ +  ++   TN YA   LA  PL RY+    W     AEMK + G+ L M +    ++  +        W  T    +P F     R R+  +   LH      ++P  V     R  KL  ++N++ + C   +   Q I IDES +  K R
Sbjct:  114 VDFFQLYITEAILQDMVLYTNLYAEQYLARNPLPRYARAQAWHPTDIAEMKKFLGLTLAMGLIKANSLESY--------WDTTTVLSIPVFSATMPRNRYQLLLRFLHFNNNATAVPPDVPG-HDRLHKLRPLINSLSERCGEVYTPSQNICIDESLLLFKGR 267
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BLAST of DDE_Tnp_1_7 domain-containing protein vs. TrEMBL
Match: A0A1B6MGG4 (DDE_Tnp_1_7 domain-containing protein (Fragment) OS=Graphocephala atropunctata OX=36148 GN=g.845 PE=4 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.427e-25
Identity = 62/158 (39.24%), Postives = 96/158 (60.76%), Query Frame = 3 
Query:  822 LDFFQMHFTDELTMEITKQTNDYAGLQLA-NRPLCRYSIWTKWKAVSSAEMKVYFGVILNMTINDIPNVFDFRCF*FSKDWTNTMPFFVDVFSRMRFLQIQWILHLSLP---VPVGAVVIRSDKLEIVVNTVQDIC*HKFIQDQPITIDESTIGLKRR 1283
            LD+FQ+ FTDEL M+I  ++N +A  ++  + PL RYS+W  WK +S  E+K + GVI+NM++N  P + D+    FS +W +  PFF  + SR RF QI W LHLS P   +P+   + RS K+   +  +++     F   + +++DEST+G K R
Sbjct:   87 LDYFQLFFTDELFMQIAHESNAFAKQKIQISTPLTRYSVWHSWKDISLCEIKAFIGVIINMSLNPKPLLEDY----FSNNWLDNQPFFKKILSRERFFQIFWTLHLSPPSTTLPILGTLTRSGKVRKFLLYLENKFQEHFCPSKYLSLDESTVGFKGR 240
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BLAST of DDE_Tnp_1_7 domain-containing protein vs. TrEMBL
Match: A0A1B6MI17 (DDE_Tnp_1_7 domain-containing protein OS=Graphocephala atropunctata OX=36148 GN=g.44843 PE=4 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.206e-25
Identity = 63/167 (37.72%), Postives = 100/167 (59.88%), Query Frame = 3 
Query:  798 ATNAIQTVLDFFQMHFTDELTMEITKQTNDYAGLQL-ANRPLCRYSIWTKWKAVSSAEMKVYFGVILNMTINDIPNVFDFRCF*FSKDWTNTMPFFVDVFSRMRFLQIQWILHLSLP--VPVGAVVIRSDKLEIVVNTVQDIC*HKFIQDQPITIDESTIGLKRRFL 1289
            + +   T L+FFQ+ FTD L +EI K+TN YA  ++  N PL + S+W  W  ++ +E+K + GVI+NM +N  P + D+    FS +W +  PFF DVFS+ RF+QI W LH+  P   PV   + RS K+  V + +       ++ ++ +++DEST+G K R +
Sbjct:  102 SNDKPSTPLEFFQLFFTDSLLIEIVKETNRYAAEKIQKNTPLQKKSVWWSWIDLTISELKAFLGVIINMGMNGKPEMTDY----FSTNWVDYQPFFKDVFSKERFMQIFWNLHICPPPSGPVAGTLTRSGKVRNVASYLDKKFREHYVPEKEVSVDESTVGFKGRIV 264
[Close]
BLAST of DDE_Tnp_1_7 domain-containing protein vs. TrEMBL
Match: A0A1A9Z230 (DDE_Tnp_1_7 domain-containing protein OS=Glossina pallidipes OX=7398 PE=4 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.964e-22
Identity = 65/169 (38.46%), Postives = 90/169 (53.25%), Query Frame = 3 
Query:  786 TGSQATNAIQTVLDFFQMHFTDELTMEITKQTNDYAGLQLANRPLCRYSIWTKWKAVSSAEMKVYFGVILNMTINDIPNVFDFRCF*FSKDWTNTMPFFVDVFSRMRFLQIQWILHLSLPVPVGAVVIRSDKLEIVVNTVQDIC*H---KFIQDQPITIDESTIGLKRR 1283
             G Q +N I+  LDFF+++FTD L   I K+TNDYA  +L   P  + +IW  W  V+  E   + GVILNM    + N+ ++ C  F    T+ +PFF DVF+R RFLQI  +LHL    P G       +++   N +Q I       FI  Q I +DES I  K +
Sbjct:  103 AGPQISNDIKEPLDFFRLYFTDALIDSIVKETNDYANSKLRKMPFSKITIWNTWSDVNRKEFLAFIGVILNMGTMPVVNLQEYWCTKF----TSKIPFFSDVFTRDRFLQIFLMLHLHKNAPEGRNTSLRTRIQKANNFLQHINSKFSAHFIPYQTICVDESIIKFKGK 267
[Close]
BLAST of DDE_Tnp_1_7 domain-containing protein vs. TrEMBL
Match: E2BAB9 (PiggyBac transposable element-derived protein 4 (Fragment) OS=Harpegnathos saltator OX=610380 GN=EAI_11398 PE=4 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.372e-20
Identity = 59/167 (35.33%), Postives = 101/167 (60.48%), Query Frame = 3 
Query:  786 TGSQATNAIQTVLDFFQMHFTDELTMEITKQTNDYAGLQLANRPLCRYSIWTKWKAVSSAEMKVYFGVILNMTINDIPNVFDFRCF*FSKDWTNTMPFFVDVFSRMRFLQIQWILHL-SLPVPVGAVVIRSDKLEIVVNTVQDIC*HKFIQDQPITIDESTIGLKRR 1283
            TG    +   T L FFQ+ FTD+L  +I  +TN Y    + ++ L   SIW +WK V+  EMK +FGVI+NM + ++P++ D+    +++++ + +PFF  +FSR RF+QI W LHL +LP  +  +  ++ K+   ++ +       +I ++ ++IDEST+G K R
Sbjct:   15 TGPHVPSNCTTPLHFFQLFFTDDLIKKIVIETNIYTANIIQHKQLSIRSIWKQWKNVTECEMKAFFGVIINMGLINMPSLQDY----WARNFYSKIPFFSKIFSRDRFMQIFWALHLETLPRSMN-MTTKTRKISSYLDFLNKKFMEHYIPEKNLSIDESTVGFKGR 176
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BLAST of DDE_Tnp_1_7 domain-containing protein vs. TrEMBL
Match: A0A482X6I1 (DDE_Tnp_1_7 domain-containing protein OS=Laodelphax striatellus OX=195883 GN=LSTR_LSTR000098 PE=4 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.761e-20
Identity = 64/159 (40.25%), Postives = 91/159 (57.23%), Query Frame = 3 
Query:  822 LDFFQMHFTDELTMEITKQTNDYAGLQL-ANRPLCRYSIWTKWKAVSSAEMKVYFGVILNMTINDIPNVFDFRCF*FSKDWTNTMPFFVD-VFSRMRFLQIQWILHLSLPVPVGAV---VIRSDKLEIVVNTVQDIC*HKFIQDQPITIDESTIGLKRR 1283
            L +FQ+ FTDEL ++I  +TN YA  ++ AN PL + S W  W  ++  E K + GVI+NM++N  P + D+    FS DW +   FF D +FS+ RF QI W LHLS P  +G V   V RS K++ VV  ++      +     ++I ESTI  K R
Sbjct:  114 LHYFQLFFTDELFLQIINETNRYAQEKIKANTPLTKNSTWHSWIDLTLPEFKAFLGVIMNMSLNPKPEMEDY----FSSDWLDYQTFFKDIIFSKERFFQIFWTLHLSPPNNIGPVLGTVTRSGKVKRVVQYLEKKFREYYCPSDTVSIGESTIDFKGR 268
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BLAST of DDE_Tnp_1_7 domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002004.1 (pep scaffold:Pmarinus_7.0:GL490362:1254:2954:1 gene:ENSPMAG00000001819.1 transcript:ENSPMAT00000002004.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 49.2914 bits (116), Expect = 2.320e-6
Identity = 46/163 (28.22%), Postives = 74/163 (45.40%), Query Frame = 3 
Query:  816 TVLDFFQMHFTDELTMEITKQTNDYAGLQLANRPLCRYSIWTKWKAVSSAEMKVYFGVILNMTINDIPNVFDFRCF*FSKDWTNTMPFFVDVFSRMRFLQIQWIL--HLSLPVPVGAVVIRSDKLEIVVNTVQDIC*HKF----IQDQPITIDESTIGLKRRF 1286
            T L F Q+  T EL M  T +TN YA   LAN+     +    W+ V+  ++  Y G+ + M +  +P +  +    +S     +MP F +  S  RF  I      H S  VP       +D+L + V TV +    KF      ++ +++DE+T+  K R 
Sbjct:   15 TPLGFIQLFITRELLMFFTNETNSYANCALANKSAEERA---GWEGVNLMDIANYLGLTMAMGVASLPEIPMY----WSTGKPYSMPAFRETMSCKRFKSIGRFFNCHNSCAVPRD----NTDRL-LQVRTVMEYFQSKFKALYAPNRELSLDEATLEWKGRL 165
The following BLAST results are available for this feature:
BLAST of DDE_Tnp_1_7 domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DDE_Tnp_1_7 domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DDE_Tnp_1_7 domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DDE_Tnp_1_7 domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
pgbd42.382e-824.42piggyBac transposable element derived 4 [Source:ZF... [more]
pgbd42.540e-824.42piggyBac transposable element derived 4 [Source:ZF... [more]
CABZ01069162.15.872e-625.31pep scaffold:GRCz11:KN149950.1:74:5493:1 gene:ENSD... [more]
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BLAST of DDE_Tnp_1_7 domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
dlgap55.720e-928.22discs large homolog associated protein 5 [Source:X... [more]
ENSXETT00000024424.11.104e-828.22pep primary_assembly:Xenopus_tropicalis_v9.1:KV461... [more]
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BLAST of DDE_Tnp_1_7 domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DDE_Tnp_1_7 domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DDE_Tnp_1_7 domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1B6MGG41.427e-2539.24DDE_Tnp_1_7 domain-containing protein (Fragment) O... [more]
A0A1B6MI173.206e-2537.72DDE_Tnp_1_7 domain-containing protein OS=Graphocep... [more]
A0A1A9Z2308.964e-2238.46DDE_Tnp_1_7 domain-containing protein OS=Glossina ... [more]
E2BAB91.372e-2035.33PiggyBac transposable element-derived protein 4 (F... [more]
A0A482X6I12.761e-2040.25DDE_Tnp_1_7 domain-containing protein OS=Laodelpha... [more]
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BLAST of DDE_Tnp_1_7 domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DDE_Tnp_1_7 domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSPMAT00000002004.12.320e-628.22pep scaffold:Pmarinus_7.0:GL490362:1254:2954:1 gen... [more]
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BLAST of DDE_Tnp_1_7 domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DDE_Tnp_1_7 domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DDE_Tnp_1_7 domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DDE_Tnp_1_7 domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30017568 ID=SMED30017568|Name=DDE_Tnp_1_7 domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2255bp
TTTATAATTTCAAACTTCGATATAATTATTATTTTTTAACATATTTTAAT
TTTTTTCATGTTCCATGCGTTGGGATATATTTATAGATTATAATAAATAT
CAGATAGGCATTACTAATATTTAATTCTTTCCTATCCTGTGTATGTAAAA
TGATAACCAAAAATTTTTGCTAGCGTTATCCTCTATAAAAAAGTGACACG
TTTTTTTCCAATTCATATTCAGTCCACTGCCGATATAAATATGAAAAAAA
AATTACAGTGCGTTAATCTAATCTTTTTTCGATTGAAATATGAAATTGTA
CTATACTGTCGATAGCGATACTACAGCTGGCGTGACTCAGTAGTGGGCTG
TATGGCGGTTTAGTTGTTTTGTCATTCAGGCCTAGGTCGACACAGACTTA
CCGCCACATGTTTATAATTATCACTATTATTTGTGTTTATTGCTGTAATA
CTGCTAGAAAATACAAAATAATATCAATAATTATATAATAATCTGTTATT
TTAGAATAAATAATTGTGAACGATGGCTAAGAGATTTCGTGGCGCAGAAG
GGTTAGAGCAAATACTTGCAATGGACGACGACGACGATGAAGGTGATTCT
GTTGCAAACGATGATGACAACGAAATTGAAGATGACTTACCAGATGCAAA
TTTGAGTAGTGAGGATGATGAGGATAGTTCTATTGAAGAAAATAATGACA
GTGATATGGATATTGATGTGCAGCAGTGGCAAAAATGCTACCAGATGGAG
CAGTATTTGCCAGATTTCCATTTACATTTCCCAAAACAGGTTCACAAGCT
ACCAATGCAATTCAAACCGTCTTGGATTTCTTTCAAATGCATTTCACAGA
TGAATTGACAATGGAAATTACAAAGCAGACCAATGATTATGCTGGACTGC
AATTAGCCAATCGTCCACTTTGTAGATACTCAATCTGGACGAAATGGAAA
GCAGTTTCATCTGCAGAAATGAAAGTCTATTTTGGAGTGATACTCAACAT
GACAATCAACGATATACCTAATGTTTTCGATTTTCGATGTTTTTGATTTT
CCAAGGATTGGACAAATACCATGCCATTCTTTGTGGATGTCTTCAGTAGG
ATGCGCTTTCTCCAGATCCAATGGATACTTCACTTGAGTCTACCTGTCCC
GGTTGGAGCCGTTGTAATCAGGTCAGACAAGCTTGAAATTGTTGTCAATA
CTGTGCAAGATATATGTTAACACAAATTTATTCAGGATCAGCCTATCACT
ATAGACGAATCCACAATTGGATTAAAAAGACGTTTCCTTCAAGATGTATA
ATCCACAAAACCTTGTGGGCAGTGCGTAATGCACCTGTGTGGCGTGGACG
TCCAAGTATAGCTGGTTCTGCAGAAAGATGAAACGGGAAAACTAATTTCC
TCGAACAGTCAACGAAACAAAAAGATTGCAAGGTCTGCAGCAATCGCAAG
GTGAAGGGCGGTTGCCATCTTACTCAGTTATATTGCCAGCATTTCATACG
GTCGATTGCTTCGAGAAATATCATTCAATGGCTAATTACAAGTGAATGAG
ACTTTGTCATACTGGAAGCAAGTGAACTGATTGACTTTAGCTGTAGCTTA
AATATTGGTAATAGGGTCAAAATTTACTGAAAAAAATATGAAATCAAAAA
ATTAAATTTTTTATTTTATTTTTATTTTTGGGCAATTATATTGGGATTGG
AATAGGTGGAGTGCAGTAAATAATTAGGATAGAAAAGGGTTACCAATTGG
TTGAAATAAAAAGAATTTTGGTGTACAAATGTACTCCATGTAGTGTTGTG
AAAGTTAAACAAAAATAAAATAACTAAAAAATTATGATTCAGGTTATTTA
TAGTTAACTTTCTAAGGTCACAGCCCACTCTGTAACCATAAATTGTTAAA
ATATCTATATTTTTAACCTTACTTTTAACACAAATTCATTTAATAATAAA
ATAAATTCGAAAAATTCGAAAAACAAAAGATTACTTAAAATTAGAGTGAA
TTTTGTTGACAACTAATTTTTTCTTGATTCGATTTCTTGTGTTAATATTA
TCTGAATACTGCATCCAGTCGGCATAGAATTGTTTCCCAAATCAAATCTT
TTTTTCAAATTGGTTTTGTATAGTTATTTTTACTAGATAATTTGTGAGTT
CAGAAACATTTGTTCTCTTTTAATTTGATTAATTCTATATTTGGATTGTT
CCAATATAATTAAAGAGTTATTTACGTAACAGGTCCTTCCAGATGGTGAA
ATTCT
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protein sequence of SMED30017568-orf-1

>SMED30017568-orf-1 ID=SMED30017568-orf-1|Name=SMED30017568-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=104bp
MLPDGAVFARFPFTFPKTGSQATNAIQTVLDFFQMHFTDELTMEITKQTN
DYAGLQLANRPLCRYSIWTKWKAVSSAEMKVYFGVILNMTINDIPNVFDF
RCF*
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protein sequence of SMED30017568-orf-2

>SMED30017568-orf-2 ID=SMED30017568-orf-2|Name=SMED30017568-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=112bp
MAKRFRGAEGLEQILAMDDDDDEGDSVANDDDNEIEDDLPDANLSSEDDE
DSSIEENNDSDMDIDVQQWQKCYQMEQYLPDFHLHFPKQVHKLPMQFKPS
WISFKCISQMN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR029526PGBD
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029526PiggyBac transposable element-derived proteinPFAMPF13843DDE_Tnp_1_7coord: 31..100
e-value: 2.1E-8
score: 33.9