Transposon Ty3-I Gag-Pol polyprotein

Overview
NameTransposon Ty3-I Gag-Pol polyprotein
Smed IDSMED30017482
Length (bp)430
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Transposon Ty3-I Gag-Pol polyprotein (SMED30017482) t-SNE clustered cells

Violin plots show distribution of expression levels for Transposon Ty3-I Gag-Pol polyprotein (SMED30017482) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Transposon Ty3-I Gag-Pol polyprotein (SMED30017482) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Transposon Ty3-I Gag-Pol polyprotein (SMED30017482) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30017482

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
Smed sexual biotypeSMED30017482SMESG000065721.1 SMESG000065719.1 Contig21413newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30017482SMESG000065721.1 SMESG000065719.1 Contig21413uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: CR354395.2 (pep chromosome:GRCz11:12:13553730:13556536:-1 gene:ENSDARG00000101547.2 transcript:ENSDART00000166396.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR354395.2)

HSP 1 Score: 52.373 bits (124), Expect = 2.430e-8
Identity = 28/95 (29.47%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:   55 AYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYG--KRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSR 333
            A+ S  ++S E+ Y +  +E+L +    + + H+L G  ++FT+  DHK + ++LS+K+ +     +   + +  D  + YR G  ++ ADALSR
Sbjct:  500 AFFSRKLTSAERNYDVGNRELLAMKLALEEWRHWLEGASQQFTILTDHKNLEYLLSAKR-LNPRQARWALFFTRFDFIVTYRPGSKNSKADALSR 593
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: BX571665.1 (pep chromosome:GRCz11:17:35431724:35437222:1 gene:ENSDARG00000111789.1 transcript:ENSDART00000190293.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX571665.1)

HSP 1 Score: 50.0618 bits (118), Expect = 1.880e-7
Identity = 27/95 (28.42%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:   55 AYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYG--KRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSR 333
            A+ S  ++S E+ Y +  +E+L +    + + H+L G  ++FT+  DHK + ++ S+K+ +     +   + +  D  + YR G  ++ ADALSR
Sbjct:  835 AFFSRKLTSAERNYDVGNRELLAMKLALEEWRHWLEGASQQFTILTDHKNLEYLRSAKR-LNPRQARWALFFTRFDFIVTYRPGSKNSKADALSR 928
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: CU929458.1 (pep chromosome:GRCz11:11:43363075:43368382:1 gene:ENSDARG00000114395.1 transcript:ENSDART00000179934.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CU929458.1)

HSP 1 Score: 50.0618 bits (118), Expect = 1.880e-7
Identity = 27/95 (28.42%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:   55 AYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYG--KRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSR 333
            A+ S  ++S E+ Y +  +E+L +    + + H+L G  ++FT+  DHK + ++ S+K+ +     +   + +  D  + YR G  ++ ADALSR
Sbjct:  842 AFFSRKLTSAERNYDVGNRELLAMKLALEEWRHWLEGASQQFTILTDHKNLEYLRSAKR-LNPRQARWALFFTRFDFIVTYRPGSKNSKADALSR 935
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: CR533578.3 (pep chromosome:GRCz11:16:23466094:23471387:-1 gene:ENSDARG00000115891.1 transcript:ENSDART00000180899.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR533578.3)

HSP 1 Score: 50.0618 bits (118), Expect = 1.880e-7
Identity = 27/95 (28.42%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:   55 AYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYG--KRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSR 333
            A+ S  ++S E+ Y +  +E+L +    + + H+L G  ++FT+  DHK + ++ S+K+ +     +   + +  D  + YR G  ++ ADALSR
Sbjct:  842 AFFSRKLTSAERNYDVGNRELLAMKLALEEWRHWLEGASQQFTILTDHKNLEYLRSAKR-LNPRQARWALFFTRFDFIVTYRPGSKNSKADALSR 935
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: BX511224.1 (pep chromosome:GRCz11:2:18017000:18022765:1 gene:ENSDARG00000113243.1 transcript:ENSDART00000186877.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX511224.1)

HSP 1 Score: 47.3654 bits (111), Expect = 1.477e-6
Identity = 31/110 (28.18%), Postives = 56/110 (50.91%), Query Frame = 1 
Query:   13 VLIQRD-NNGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGK--RFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSR 333
            +L QR  ++G     AY S+ +SS E+ Y I  +E+L +    + + H+L G    F +  DHK + ++ S+K+ + +   +   +    +  + YR G  +   DALSR
Sbjct:  834 ILSQRSASDGKVHPCAYFSHRLSSAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKNLEYIKSAKR-LNSRQARWALFFGRFNFTISYRPGSKNIKPDALSR 942
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: ENSXETT00000024810.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:KV464121.1:1437:3201:1 gene:ENSXETG00000014958.1 transcript:ENSXETT00000024810.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 60.4622 bits (145), Expect = 5.775e-11
Identity = 36/117 (30.77%), Postives = 54/117 (46.15%), Query Frame = 1 
Query:   13 VLIQRDNNGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINY---LSSLDIKMEYRKGVNHANADALSRSTCGTCT 354
            VL Q D  G E  I Y S  +   E  Y    KE L I +  +    YL+G  FT+  DH  ++++      ++    K + +   L   +  +++RKG +H NAD LSR     CT
Sbjct:  198 VLSQVDEKGGEHPIIYLSRKLLPREVAYATIEKECLAIVWALKKLQPYLFGSAFTVVTDHNPLSWLQR----VSGDNGKLLRWSLALQQFNFTIQHRKGSHHGNADGLSRRDGEDCT 310
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: anxa6 (annexin A6 [Source:Xenbase;Acc:XB-GENE-989741])

HSP 1 Score: 58.151 bits (139), Expect = 3.583e-10
Identity = 35/110 (31.82%), Postives = 54/110 (49.09%), Query Frame = 1 
Query:   13 VLIQRDNNGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINY---LSSLDIKMEYRKGVNHANADALSR 333
            VL Q +  G E  +AY S  +   E  Y    KE L I +  Q    YLYG+ FT+  DH  ++++    + ++    K + +   L   +  +++RKG  H NAD LSR
Sbjct:  648 VLSQVNTYGEEHPVAYLSRKLLPREAAYATIEKECLAIVWALQKLQPYLYGREFTVVTDHNPLSWL----QRVSGDNGKLLRWSLLLQQYNFTIQHRKGKEHHNADGLSR 753
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: ENSXETT00000011934.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:3:51966053:51967075:1 gene:ENSXETG00000005538.1 transcript:ENSXETT00000011934.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 56.6102 bits (135), Expect = 8.209e-10
Identity = 35/110 (31.82%), Postives = 53/110 (48.18%), Query Frame = 1 
Query:   34 NGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSR--STCGTCTQ 357
            NG E  +AY S  ++  E  Y I  +E L I +  +   +YL G++F L  DH  + +M  +++   A   +    L +    +E+R G    NADALSR  S    C Q
Sbjct:  128 NGEEHPVAYLSRKLTPAECRYAIVERECLAIKWALESLRYYLLGRQFKLITDHAPLKWMAQNREK-NARVTRWFLSLQNFKFSVEHRPGKLQGNADALSRVYSLMACCAQ 236
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: ENSXETT00000031144.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:8:63282574:63284044:1 gene:ENSXETG00000009810.1 transcript:ENSXETT00000031144.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 54.299 bits (129), Expect = 7.662e-9
Identity = 35/108 (32.41%), Postives = 60/108 (55.56%), Query Frame = 1 
Query:   13 VLIQRDNNGYEKVIAYGSYTMSSNEKGYCITRKEML-LIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSR 333
            VL QR   G   V AY S +++ +EK Y + + E L L +      + +LYG  F +R D+  +T++L++ K + A+  + +  LS+    ++Y+ G  +  ADALSR
Sbjct:  140 VLHQRYPEGLRPV-AYLSRSLAPSEKNYPVHKLEFLALKWAIVDKLHDFLYGVEFEVRTDNNPLTYILTTAK-LDATGHRWLAALSNYSFTLKYKPGPRNIGADALSR 245
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: ENSXETT00000006041.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:6:37317867:37322724:1 gene:ENSXETG00000003070.1 transcript:ENSXETT00000006041.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 50.0618 bits (118), Expect = 2.733e-7
Identity = 29/111 (26.13%), Postives = 60/111 (54.05%), Query Frame = 1 
Query:   16 LIQRDNNGYEKVIAYGSYTMSSNEKGYCITRKEML-LIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSRSTCG 345
            ++ ++ N   + +A+ S ++S +E+ Y   + E L L +      + YLYG  F ++ D+  +T++L++ K + A+  + +  L+     + YR G ++ +AD LSR   G
Sbjct:  660 ILYQEYNKELRPVAFISRSLSPSERNYPAHKLEFLALKWAVVDKLHEYLYGAEFEVQTDNNPLTYILTTAK-LDATGHRWLAALAHYKFSLRYRPGRDNRDADGLSRRPHG 769
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|P10394|POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.840e-12
Identity = 34/108 (31.48%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:   16 LIQRDNNGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSRST 339
            ++ +++NG++  +AY S   +  E     T +E+  I++   HF  Y+YGK FT++ DH+ +T++ S   P ++   +    L   +  +EY KG ++  ADALSR T
Sbjct:  630 VLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNP-SSKLTRIRLELEEYNFTVEYLKGKDNHVADALSRIT 736
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|Q7LHG5|YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 1.564e-10
Identity = 37/109 (33.94%), Postives = 59/109 (54.13%), Query Frame = 1 
Query:   13 VLIQRDN-NGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSRS 336
            VL + DN N    V+ Y S ++ S +K Y     E+L I     HF + L+GK FTLR DH ++  + +  +P     Q+ ++ L++ D  +EY  G  +  ADA+SR+
Sbjct:  928 VLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEP-ARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRA 1035
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|Q99315|YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 61.2326 bits (147), Expect = 1.742e-10
Identity = 37/109 (33.94%), Postives = 59/109 (54.13%), Query Frame = 1 
Query:   13 VLIQRDN-NGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSRS 336
            VL + DN N    V+ Y S ++ S +K Y     E+L I     HF + L+GK FTLR DH ++  + +  +P     Q+ ++ L++ D  +EY  G  +  ADA+SR+
Sbjct:  902 VLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEP-ARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRA 1009
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|P20825|POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 3.238e-10
Identity = 34/100 (34.00%), Postives = 58/100 (58.00%), Query Frame = 1 
Query:   34 NGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSR 333
            NG+   I++ S T++ +E  Y    KE+L I +  + F HYL G++F +  DH+ + ++ + K+P  A  ++    LS    K++Y KG  ++ ADALSR
Sbjct:  526 NGHP--ISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEP-GAKLERWRVRLSEYQFKIDYIKGKENSVADALSR 622
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|P04323|POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.402e-9
Identity = 31/94 (32.98%), Postives = 51/94 (54.26%), Query Frame = 1 
Query:   52 IAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSR 333
            ++Y S T++ +E  Y    KE+L I +  + F HYL G+ F +  DH+ ++++   K P  +   +    LS  D  ++Y KG  +  ADALSR
Sbjct:  531 LSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDP-NSKLTRWRVKLSEFDFDIKYIKGKENCVADALSR 623
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A4Y2R8S6 (Retrovirus-related Pol polyprotein from transposon 297 (Fragment) OS=Araneus ventricosus OX=182803 GN=pol_227 PE=4 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.993e-26
Identity = 50/117 (42.74%), Postives = 76/117 (64.96%), Query Frame = 1 
Query:   43 EKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSRSTCG-TCTQCLLSQENAKTE 390
            E+VIAY S ++   E+ YC+TRKE+L+I    +HF+HYLYG++F LR DH ++ ++L+ K+P      + I  L   D K+++RKG +H NADALSR  C  TC  C  +++  + E
Sbjct:   79 ERVIAYFSKSLGKPERNYCVTRKELLVIVKSIEHFHHYLYGRKFLLRTDHASLRWLLNFKEP-EGQIARWIQRLQEYDFKIQHRKGTSHGNADALSRRPCTETCKHCTNAKKKFRME 194
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A4Y2ATX3 (Retrovirus-related Pol polyprotein from transposon 297 (Fragment) OS=Araneus ventricosus OX=182803 GN=pol_3908 PE=4 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.329e-26
Identity = 50/117 (42.74%), Postives = 76/117 (64.96%), Query Frame = 1 
Query:   43 EKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSRSTCG-TCTQCLLSQENAKTE 390
            E+VIAY S ++   E+ YC+TRKE+L+I    +HF+HYLYG++F LR DH ++ ++L+ K+P      + I  L   D K+++RKG +H NADALSR  C  TC  C  +++  + E
Sbjct:   93 ERVIAYFSKSLGKPERNYCVTRKELLVIVKSIEHFHHYLYGRKFLLRTDHASLRWLLNFKEP-EGQIARWIQRLQEYDFKIQHRKGTSHGNADALSRRPCTETCKHCTNAKKKFRME 208
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A4Y2X454 (Transposon Ty3-I Gag-Pol polyprotein OS=Araneus ventricosus OX=182803 GN=TY3B-I_1466 PE=4 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.111e-25
Identity = 54/128 (42.19%), Postives = 81/128 (63.28%), Query Frame = 1 
Query:   13 VLIQRDNNGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSRSTCG-TCTQCLLSQENAKTEK 393
            VL Q   NG E+VIAY S ++   E+ YC+TRKE+L I    +HF+HYLYG++F LR DH ++ ++L+ K+P      + I  L   D ++++RKG +H NADALSR  C  +C QC  +++    E+
Sbjct:  575 VLSQNTGNG-ERVIAYFSKSLGKPERNYCVTRKELLAIVKSIEHFHHYLYGRKFLLRTDHASLRWLLNFKEP-EGQIARWIQRLQEYDFEIQHRKGTSHGNADALSRRPCKESCKQCTNAEKKFGMER 700
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A4Y1ZPU2 (Retrovirus-related Pol polyprotein from transposon 297 OS=Araneus ventricosus OX=182803 GN=pol_4202 PE=4 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.326e-25
Identity = 49/129 (37.98%), Postives = 82/129 (63.57%), Query Frame = 1 
Query:   13 VLIQRDNNGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSRSTCG-TCTQCLLSQENAKTEKI 396
             ++ ++    E+VIAY S ++   E+ YC+TRKE+L I    +HF+HYLYG++F LR DH ++ ++L+ K+P      + I  L   D ++++RKG +H NADALSR  C  +C QC  + ++++  +I
Sbjct:  154 AVLSQNTGNEERVIAYFSKSLGKPERNYCVTRKELLAIVKSIEHFHHYLYGRKFLLRTDHTSLRWLLNFKEP-EGQIARWIQRLQEYDFEIQHRKGTSHGNADALSRRPCKESCKQCTNADKSSEWREI 281
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A4Y2S3M5 (Retrovirus-related Pol polyprotein from transposon 297 (Fragment) OS=Araneus ventricosus OX=182803 GN=pol_3701 PE=4 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.261e-25
Identity = 47/117 (40.17%), Postives = 74/117 (63.25%), Query Frame = 1 
Query:   13 VLIQRDNNGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSRSTCG-TCTQC 360
             ++ ++    E+VIAY S ++   E+ YC+TRKE+L I    +HF+HY YG++F LR DH ++ ++L+ K+P      + I  L   D ++++RKG +H NADALSR  C  +C QC
Sbjct:   41 AVLSQNTGNEERVIAYFSKSLGKPERNYCVTRKELLAIVKSIEHFHHYFYGRKFLLRTDHASLRWLLNFKEP-EGQIARWIQRLQEYDFEIQHRKGTSHGNADALSRRPCKESCKQC 156
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000038919.1 (pep primary_assembly:Astyanax_mexicanus-2.0:25:7611858:7613942:-1 gene:ENSAMXG00000031762.1 transcript:ENSAMXT00000038919.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 99.3673 bits (246), Expect = 1.016e-24
Identity = 43/126 (34.13%), Postives = 72/126 (57.14%), Query Frame = 1 
Query:   16 LIQRDNNGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSRSTCGTCTQCLLSQENAKTEK 393
            ++ +  N  E+V+AYGS  +S  E+ YC TR+E+L +  F  HF  YL G+ FT+R DH ++ +++  K+P      + +  L   D K+ +R G  H NADA+SR  C     C++   ++ +E+
Sbjct:  149 VLSQVQNDEERVLAYGSRRLSQTEQNYCTTRRELLAVVEFTSHFRQYLLGRTFTVRTDHSSLRWLMRMKEP-EGQLARWLEKLGEYDFKVIHRPGAQHCNADAMSRRPCRKSCPCMVPDPSSSSER 273
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000048272.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000106.1:219951:223307:1 gene:ENSAMXG00000032559.1 transcript:ENSAMXT00000048272.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 93.9745 bits (232), Expect = 6.758e-23
Identity = 41/115 (35.65%), Postives = 70/115 (60.87%), Query Frame = 1 
Query:   16 LIQRDNNGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSRSTCGTCTQC 360
            ++ +  +G E+V+AYGS  +SS E+ YC TR+E+L +  F +HF  YL G+ F +R DH ++ ++++ K+P      + +  L+  D ++ +R G +H NAD +SR  C T   C
Sbjct:  388 VLSQVQDGAERVLAYGSRRLSSTEQNYCTTRRELLAVVEFTRHFRQYLLGRPFIVRSDHSSLRWLVNMKEP-EGQLARWLEKLAEYDFQVVHRPGHHHQNADVMSRRPCRTTCPC 501
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000052614.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02001686.1:18497:23810:-1 gene:ENSAMXG00000038033.1 transcript:ENSAMXT00000052614.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 93.5893 bits (231), Expect = 8.901e-23
Identity = 41/115 (35.65%), Postives = 70/115 (60.87%), Query Frame = 1 
Query:   16 LIQRDNNGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSRSTCGTCTQC 360
            ++ +  +G E+V+AYGS  +SS E+ YC TR+E+L +  F +HF  YL G+ F +R DH ++ ++++ K+P      + +  L+  D ++ +R G +H NAD +SR  C T   C
Sbjct:  213 VLSQVQDGAERVLAYGSRRLSSTEQNYCTTRRELLAVVEFTRHFRQYLLGRPFIVRSDHSSLRWLVNIKEP-EGQLARWLEKLAEYDFQVVHRPGHHHQNADVMSRRPCRTTCPC 326
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000039384.1 (pep primary_assembly:Astyanax_mexicanus-2.0:25:21146036:21149703:-1 gene:ENSAMXG00000035834.1 transcript:ENSAMXT00000039384.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 92.4337 bits (228), Expect = 2.690e-22
Identity = 40/100 (40.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   34 NGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSR 333
            +G+EKV+AY S  +S  EK Y  T+KE+L + +F  +F HYL G+RF LR DH ++ ++ +  +P      + +  L+  D ++E+R G  H NAD+LSR
Sbjct:  168 DGFEKVVAYASRALSRQEKNYATTKKELLAVVHFTSYFRHYLLGRRFLLRTDHSSLRWLHNFSQP-EGQLARWLEQLAQFDYEIEHRPGKKHVNADSLSR 266
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000039316.1 (pep primary_assembly:Astyanax_mexicanus-2.0:15:30933509:30934681:1 gene:ENSAMXG00000029182.1 transcript:ENSAMXT00000039316.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 90.8929 bits (224), Expect = 3.978e-22
Identity = 40/100 (40.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:   34 NGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSR 333
            +G+EKV+AY S  +S  EK Y  T+KE+L + +F  +F HYL G+RF LR DH ++ ++ +  +P        +  L+  D ++E+R G  H NAD+LSR
Sbjct:  180 DGFEKVVAYASRALSRQEKNYATTKKELLAVVHFTSYFRHYLLGRRFLLRTDHSSLRWLHNFSQP-EGQLACWLEQLAQFDYEIEHRPGKKHVNADSLSR 278
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000036827.1 (pep primary_assembly:ASM223467v1:16:28613823:28617539:1 gene:ENSORLG00000023550.1 transcript:ENSORLT00000036827.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 91.2781 bits (225), Expect = 6.461e-22
Identity = 47/118 (39.83%), Postives = 70/118 (59.32%), Query Frame = 1 
Query:   13 VLIQRDNNGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSRSTCGT--CTQC 360
            VL Q  + G E+V+AY S T+S  E+ YC+TR+E+L +     HF +YL G  FT+R DH A+ ++++ K+P      + +  L+S    +E+R G  HANADA+SR  C    C  C
Sbjct:  583 VLSQMGSAG-ERVVAYFSKTLSKAERRYCVTRRELLAVVKAIGHFRYYLCGLPFTVRTDHSALQWLMTFKEP-EGQIARWLEELASFSFTVEHRPGSRHANADAMSRRPCALAGCQYC 698
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000040305.1 (pep primary_assembly:ASM223467v1:1:25459511:25466649:-1 gene:ENSORLG00000028409.1 transcript:ENSORLT00000040305.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 90.8929 bits (224), Expect = 7.648e-22
Identity = 42/110 (38.18%), Postives = 63/110 (57.27%), Query Frame = 1 
Query:   37 GYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSRSTCGTCTQCLL 366
            G E+V+AYGS  +++ E+ YC TR+E+L +  F  HF  YL G+ F LR DH ++ ++   K+P      + +  L+  D ++ +R G  H NADALSR  C     C L
Sbjct: 1149 GEERVLAYGSRRLTTTEQNYCTTRRELLAVVEFTSHFRQYLLGRSFVLRTDHSSLRWLTRLKEP-EGQLARWLEKLAEYDFQVLHRPGKVHQNADALSRRPCRELCACKL 1257
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000043530.1 (pep primary_assembly:ASM223467v1:7:30263126:30267112:-1 gene:ENSORLG00000028233.1 transcript:ENSORLT00000043530.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 72.0182 bits (175), Expect = 2.968e-15
Identity = 45/110 (40.91%), Postives = 60/110 (54.55%), Query Frame = 1 
Query:   13 VLIQRDNNGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLS---SKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSR 333
            +L QRD      VIAY S  +S  E  Y  T KE L I + C+HF+ YLYG  FTL  DHKA+  + +   SK P  A  ++    L   + ++EYRKG  +  AD +SR
Sbjct:  758 ILCQRDETAERHVIAYASRALSDVETRYSQTEKEALAIVWSCEHFHLYLYGHPFTLVTDHKALEAIWNNPKSKPP--ARIERWGLRLQPYNFRVEYRKGAENP-ADYMSR 864
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000040903.1 (uncharacterized protein K02A2.6-like [Source:NCBI gene;Acc:105357518])

HSP 1 Score: 72.0182 bits (175), Expect = 3.365e-15
Identity = 45/110 (40.91%), Postives = 60/110 (54.55%), Query Frame = 1 
Query:   13 VLIQRDNNGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLS---SKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSR 333
            +L QRD      VIAY S  +   E  Y  T KE L I + C+HF+ YLYG  FTL  DHKA+  + +   SK P  A  ++    L   + ++EYRKGV +  AD +SR
Sbjct:  758 ILCQRDETAERHVIAYASRALRDVETRYSQTEKEALAIVWSCEHFHLYLYGHPFTLVTDHKALEAIWNNPKSKPP--ARIERWGLRLQPYNFRVEYRKGVENP-ADYMSR 864
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000033726.1 (pep primary_assembly:ASM223467v1:14:24352555:24357012:-1 gene:ENSORLG00000024900.1 transcript:ENSORLT00000033726.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 71.2478 bits (173), Expect = 5.766e-15
Identity = 44/136 (32.35%), Postives = 78/136 (57.35%), Query Frame = 1 
Query:   16 LIQRDNNGYEKVIAYGSYTMSSNEKGYCITRKEML-LIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSRSTCGTCTQCLLSQENAKTEKIK--TRHKN 414
            ++ +++ G  +V+AY S  ++ +E  Y   + E L L +   + FN YLYG  F +  D   +T++L+S K + A+  + ++ LS+ D K+EYR G  + +AD LSR   G  ++  +S  N + E+I+  T+H N
Sbjct:  648 VLYQEHEGKNRVVAYASRGLTKSESRYPAHKLEFLALKWAVSEKFNDYLYGASFKVVTDSNPLTYLLTSAK-LDATSYRWLSALSTFDFKIEYRAGKQNTDADGLSRRPHGEPSEDPVS--NKELERIQRFTQHVN 780
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000029259.1 (SMESG000029259.1)

HSP 1 Score: 218.394 bits (555), Expect = 1.594e-66
Identity = 99/131 (75.57%), Postives = 112/131 (85.50%), Query Frame = 1 
Query:   13 VLIQRDNNGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSRSTCGTCTQCLLSQENAKTEKIKTR 405
            VL Q+D  G+E VIAYGS+ MSS+EKGYCITRKE+L IYYFC+HFNHYLYGKRF LR DHKAITFM+++KKPITA FQ  INYLSSLDIKMEYRKG +H NAD LSR TCGTC QC++  E+AKT KIKTR
Sbjct: 3039 VLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCGTCVQCMMEHEDAKTGKIKTR 3169
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000016546.1 (SMESG000016546.1)

HSP 1 Score: 145.591 bits (366), Expect = 1.174e-41
Identity = 66/84 (78.57%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:   13 VLIQRDNNGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYL 264
            VL Q+DNNGYEKVIAYGS+ MS++EKGYCI RKE+L IYYFCQHFNH+LYGKRFTLR D KAITFMLS+KKPITA F+  IN+L
Sbjct:  425 VLSQKDNNGYEKVIAYGSHAMSTHEKGYCIKRKELLAIYYFCQHFNHHLYGKRFTLRTDLKAITFMLSTKKPITAQFKTWINHL 508
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000038955.1 (SMESG000038955.1)

HSP 1 Score: 127.487 bits (319), Expect = 1.057e-34
Identity = 62/137 (45.26%), Postives = 87/137 (63.50%), Query Frame = 1 
Query:   13 VLIQRDNNGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSRSTCGTCTQCLLSQENAKTEKIKTRHKNMVE 423
            VL Q   +  E VIAYGS  ++ +E G+C+T KE+L ++ F  HF  YLYG+RF  R DHKA+TFM ++KKPI+  FQ  +  LS  D  ++YRKG  H NAD  SR     C+ CL+  ++AK  K +TR+ N ++
Sbjct:  409 VLSQIKEDCTEVVIAYGSRHLTKHEMGHCVTIKELLALHEFIVHFRQYLYGRRFVARTDHKALTFMNTTKKPISPQFQTWMANLSEHDFALQYRKGEEHGNADGKSRLNNTKCSHCLMENKDAKEAKCRTRYINSLQ 545
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000029294.1 (SMESG000029294.1)

HSP 1 Score: 126.716 bits (317), Expect = 2.071e-34
Identity = 61/137 (44.53%), Postives = 87/137 (63.50%), Query Frame = 1 
Query:   13 VLIQRDNNGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSRSTCGTCTQCLLSQENAKTEKIKTRHKNMVE 423
            VL Q   +G E VIAYGS  ++  E GYC+TRKE+L ++ F  HF+ YLYG+RF  R +HKA+TFM ++KKP++  FQ  I  L   +  ++YRKG  H NAD +SR     C+ C +  ++AK  K  TR+ N ++
Sbjct:  238 VLSQIKEDGTEGVIAYGSRHLAKYEMGYCVTRKELLALHKFIVHFSQYLYGRRFVARTNHKALTFMNTAKKPLSPQFQTWIANLFEYNFALQYRKGEEHGNADGMSRLNNTKCSYCQMEHKDAKEAKCGTRYINSLQ 374
[Close]
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000029294.1 (SMESG000029294.1)

HSP 1 Score: 126.716 bits (317), Expect = 2.093e-34
Identity = 61/137 (44.53%), Postives = 87/137 (63.50%), Query Frame = 1 
Query:   13 VLIQRDNNGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFNHYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKGVNHANADALSRSTCGTCTQCLLSQENAKTEKIKTRHKNMVE 423
            VL Q   +G E VIAYGS  ++  E GYC+TRKE+L ++ F  HF+ YLYG+RF  R +HKA+TFM ++KKP++  FQ  I  L   +  ++YRKG  H NAD +SR     C+ C +  ++AK  K  TR+ N ++
Sbjct:  262 VLSQIKEDGTEGVIAYGSRHLAKYEMGYCVTRKELLALHKFIVHFSQYLYGRRFVARTNHKALTFMNTAKKPLSPQFQTWIANLFEYNFALQYRKGEEHGNADGMSRLNNTKCSYCQMEHKDAKEAKCGTRYINSLQ 398
The following BLAST results are available for this feature:
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
CR354395.22.430e-829.47pep chromosome:GRCz11:12:13553730:13556536:-1 gene... [more]
BX571665.11.880e-728.42pep chromosome:GRCz11:17:35431724:35437222:1 gene:... [more]
CU929458.11.880e-728.42pep chromosome:GRCz11:11:43363075:43368382:1 gene:... [more]
CR533578.31.880e-728.42pep chromosome:GRCz11:16:23466094:23471387:-1 gene... [more]
BX511224.11.477e-628.18pep chromosome:GRCz11:2:18017000:18022765:1 gene:E... [more]
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BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSXETT00000024810.15.775e-1130.77pep primary_assembly:Xenopus_tropicalis_v9.1:KV464... [more]
anxa63.583e-1031.82annexin A6 [Source:Xenbase;Acc:XB-GENE-989741][more]
ENSXETT00000011934.18.209e-1031.82pep primary_assembly:Xenopus_tropicalis_v9.1:3:519... [more]
ENSXETT00000031144.17.662e-932.41pep primary_assembly:Xenopus_tropicalis_v9.1:8:632... [more]
ENSXETT00000006041.12.733e-726.13pep primary_assembly:Xenopus_tropicalis_v9.1:6:373... [more]
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BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P10394|POL4_DROME1.840e-1231.48Retrovirus-related Pol polyprotein from transposon... [more]
sp|Q7LHG5|YI31B_YEAST1.564e-1033.94Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomy... [more]
sp|Q99315|YG31B_YEAST1.742e-1033.94Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomy... [more]
sp|P20825|POL2_DROME3.238e-1034.00Retrovirus-related Pol polyprotein from transposon... [more]
sp|P04323|POL3_DROME1.402e-932.98Retrovirus-related Pol polyprotein from transposon... [more]
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BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4Y2R8S64.993e-2642.74Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2ATX36.329e-2642.74Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2X4545.111e-2542.19Transposon Ty3-I Gag-Pol polyprotein OS=Araneus ve... [more]
A0A4Y1ZPU25.326e-2537.98Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2S3M56.261e-2540.17Retrovirus-related Pol polyprotein from transposon... [more]
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BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSAMXT00000038919.11.016e-2434.13pep primary_assembly:Astyanax_mexicanus-2.0:25:761... [more]
ENSAMXT00000048272.16.758e-2335.65pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
ENSAMXT00000052614.18.901e-2335.65pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
ENSAMXT00000039384.12.690e-2240.00pep primary_assembly:Astyanax_mexicanus-2.0:25:211... [more]
ENSAMXT00000039316.13.978e-2240.00pep primary_assembly:Astyanax_mexicanus-2.0:15:309... [more]
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BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSORLT00000036827.16.461e-2239.83pep primary_assembly:ASM223467v1:16:28613823:28617... [more]
ENSORLT00000040305.17.648e-2238.18pep primary_assembly:ASM223467v1:1:25459511:254666... [more]
ENSORLT00000043530.12.968e-1540.91pep primary_assembly:ASM223467v1:7:30263126:302671... [more]
ENSORLT00000040903.13.365e-1540.91uncharacterized protein K02A2.6-like [Source:NCBI ... [more]
ENSORLT00000033726.15.766e-1532.35pep primary_assembly:ASM223467v1:14:24352555:24357... [more]
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BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000029259.11.594e-6675.57SMESG000029259.1[more]
SMESG000016546.11.174e-4178.57SMESG000016546.1[more]
SMESG000038955.11.057e-3445.26SMESG000038955.1[more]
SMESG000029294.12.071e-3444.53SMESG000029294.1[more]
SMESG000029294.12.093e-3444.53SMESG000029294.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30017482 ID=SMED30017482|Name=Transposon Ty3-I Gag-Pol polyprotein|organism=Schmidtea mediterranea sexual|type=transcript|length=430bp
ATACAGACGCTAGTTTTAATACAAAGAGATAATAATGGTTACGAAAAGGT
AATAGCATACGGGTCATACACAATGAGTAGTAATGAGAAAGGGTATTGCA
TCACGAGAAAGGAGATGCTATTAATTTACTATTTTTGCCAACATTTTAAT
CATTACCTTTACGGCAAAAGATTTACGTTGAGAATGGACCACAAAGCAAT
TACGTTTATGTTATCTTCAAAAAAGCCAATAACTGCGTCATTTCAAAAGG
GGATCAATTATCTCAGTAGTTTAGACATCAAAATGGAGTATAGAAAGGGA
GTGAATCACGCAAATGCAGATGCACTATCAAGAAGTACTTGTGGGACTTG
TACACAATGCTTACTGAGTCAAGAGAATGCAAAAACTGAAAAAATAAAAA
CACGGCATAAAAACATGGTGGAAAAAATTG
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protein sequence of SMED30017482-orf-1

>SMED30017482-orf-1 ID=SMED30017482-orf-1|Name=SMED30017482-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=143bp
IQTLVLIQRDNNGYEKVIAYGSYTMSSNEKGYCITRKEMLLIYYFCQHFN
HYLYGKRFTLRMDHKAITFMLSSKKPITASFQKGINYLSSLDIKMEYRKG
VNHANADALSRSTCGTCTQCLLSQENAKTEKIKTRHKNMVEKI
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding
GO:0004190aspartic-type endopeptidase activity
GO:0008270zinc ion binding
Vocabulary: biological process
TermDefinition
GO:0006508proteolysis
GO:0015074DNA integration