SMED30017439

Overview
NameSMED30017439
Smed IDSMED30017439
Length (bp)4995
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30017439 (SMED30017439) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30017439 (SMED30017439) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30017439 (SMED30017439) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30017439 (SMED30017439) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30017439

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30017439h1SMcG0001682 dd_Smed_v4_5747_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30017439h1SMcG0001682 dd_Smed_v4_8639_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
epidermisSMED30017439h1SMcG0001682 dd_Smed_v4_5747_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SMED30017439 vs. Ensembl Fly
Match: conv (gene:FBgn0261269 transcript:FBtr0339967)

HSP 1 Score: 51.2174 bits (121), Expect = 9.002e-6
Identity = 55/204 (26.96%), Postives = 101/204 (49.51%), Query Frame = 3
Query:  321 KSLKIDSPFLTNI-RNVITGYINTSRLETLTVTNGNISIFDISNL-ALPSLKTLSLPKNEIESF---LFPNSNILEILNISYNKITEWNPLNYPNLLTL---DLSHNDLNSFNFKT----ASLKFIYFSNAFSKNISSKFFQSTNNIEFMDLSKNYLSDI---SFLFVHNLNKLDLSFNKIQSLWSIELLTKSFTDLTINLSEN 887
            K L ID      + +++  G    + L  + VTNGN+S   I     L  LKTL L  N++E+     F N   LE+L+IS+N+I +    +  +L  L   ++SHN L+  +  T    + LK ++ S+     + +  F+    +  + LS N L+DI   +F  +  +  +DL+ N+++ +        ++ +L ++L+EN
Sbjct:  150 KELVIDGHAFQQLPKDLFAGQEIANSLGIIRVTNGNLSDLPIETFQPLRKLKTLDLHGNQLENLKRNQFKNLRELEVLDISHNQIKKLEAQHIADLTKLGWCNVSHNALSELSRGTFARNSVLKVLHLSHNQIARLDANSFRGMRFLRRLFLSDNVLTDIGRGTFGSIARIGTIDLARNRLKKIEFQMFTQMNYVEL-LDLAEN 352          
BLAST of SMED30017439 vs. Ensembl Fly
Match: conv (gene:FBgn0261269 transcript:FBtr0087540)

HSP 1 Score: 51.2174 bits (121), Expect = 9.002e-6
Identity = 55/204 (26.96%), Postives = 101/204 (49.51%), Query Frame = 3
Query:  321 KSLKIDSPFLTNI-RNVITGYINTSRLETLTVTNGNISIFDISNL-ALPSLKTLSLPKNEIESF---LFPNSNILEILNISYNKITEWNPLNYPNLLTL---DLSHNDLNSFNFKT----ASLKFIYFSNAFSKNISSKFFQSTNNIEFMDLSKNYLSDI---SFLFVHNLNKLDLSFNKIQSLWSIELLTKSFTDLTINLSEN 887
            K L ID      + +++  G    + L  + VTNGN+S   I     L  LKTL L  N++E+     F N   LE+L+IS+N+I +    +  +L  L   ++SHN L+  +  T    + LK ++ S+     + +  F+    +  + LS N L+DI   +F  +  +  +DL+ N+++ +        ++ +L ++L+EN
Sbjct:  150 KELVIDGHAFQQLPKDLFAGQEIANSLGIIRVTNGNLSDLPIETFQPLRKLKTLDLHGNQLENLKRNQFKNLRELEVLDISHNQIKKLEAQHIADLTKLGWCNVSHNALSELSRGTFARNSVLKVLHLSHNQIARLDANSFRGMRFLRRLFLSDNVLTDIGRGTFGSIARIGTIDLARNRLKKIEFQMFTQMNYVEL-LDLAEN 352          
BLAST of SMED30017439 vs. Ensembl Medaka
Match: lgr6 (leucine rich repeat containing G protein-coupled receptor 6 [Source:NCBI gene;Acc:101156653])

HSP 1 Score: 52.7582 bits (125), Expect = 4.076e-6
Identity = 52/164 (31.71%), Postives = 83/164 (50.61%), Query Frame = 3
Query:  375 GYINTSRLETLTVTNGNISIFDISNLA-LPSLKTLSL-PKNEIESFL-FPNSNILEILNISYNKITEWNPLNY----PNLLTLDLSHN---DLNSFNFKTASLKFIYFSNAFSKNISSKFFQSTNNIEFMDLSKNYLSDI---SFLFVHNLNKLDLSFNKIQSL 827
             ++   +L+T+      I     S    LP L TLSL    +I+ F     +  LEIL ++   ++   PL+     P L  L+LSHN   DL SF +  ++L+ I   +   + I S  FQ   +++ +DLS N L  I   +F+ +H+L KLDLS N++ S+
Sbjct:  278 AFVGNPQLQTIHFYENPIQFVGKSAFQFLPKLHTLSLNGATQIQEFPDLKGTTSLEILTLTRAGLSAL-PLDLCEQLPRLRVLELSHNQIEDLPSF-YHCSALQEIGLQHNKIRRIESSTFQQLTSLKALDLSWNVLESIHPDAFVSLHSLIKLDLSENRLSSV 439          
BLAST of SMED30017439 vs. Planmine SMEST
Match: SMESG000059833.1 (SMESG000059833.1)

HSP 1 Score: 1803.11 bits (4669), Expect = 0.000e+0
Identity = 1025/1026 (99.90%), Postives = 1026/1026 (100.00%), Query Frame = 3
Query: 1644 ATPPISTHNLPVSATSPQLLNLDVVKSENKMSEFACXXXXXXXXXXXQMLYPISNLKEEILKNLDNSQRLQIKRIVGLYKARKIHKSTMLQQIGDFLSQALGTQNYKQHVMKFWSTQKQYTLAENVDSSLTGFNYSSVVQSPEEGPGISPTEQAAQSTTDLEEDKDHHPKPQTSKYKEKISSDASKRLVRSKSTTKNSEAXXXXXXXXXXXGVLETLLNEHDNTIISDKXXXXXXXXXXXXXKLSISSTSKNQLSLDQLLMDDELPIFPNTDEKVPKKTSESASTRNANTKIIKSQPSTPVVSNSMGVLETLLNQKTPSMCTLRQMSTENILKHSIPSRQNSSDIFMEDSSYSFETNDKDKGLKKNSLLITLLNTSQNPEKGKMLNSSSSMEGLSPNYQTKRSRMSSGTQSMLDNSNSNKKMEDKLVSPEVDVFDFVDTEIGFGAXXXXXXXXXXXXXLCTRKRAQSKRTRKRRYSKDRXXXXXXXXXXXXXXXXKYMKNSSVGSVKTDDKNIILTSLLENKKPRSILTPSTPGKVPVNAEKPDNEYTPQAMVYDNQADHDDNLDLEDIKIDDFDLENLIDISENFGESNPVEMNASVDQPTSGVNIQQSNSDPSSLVNKSVVTNSSISGAATFDVMPPVYKMIGPVIKSDPIVPMSKQSVLRVSDKNSILLSAIQSTSTSNSISFECLDNXXXXXXXXXXXXKVCMGGDKPSITMGHQLSLDMLSKQMKEVGPNVMVELSVPSEIPRSRKGSISRSQSGMSTISPTCNPPSLMXXXXXXXXXXXXXXXXXXXMDNTKVPHTNASQVNHQQVREGLRLLVSSRSAQNISKNNMQINRANSGSLTETVPQNDIPSTPKTSVKDVLHYPSSIQSNNPNKDPSYPYSNQSYGSNVNNASEFKTADILEDSLVNDVFGLEELVNSKSRHSSANLEYSRLDIQETMSADLQIESSTFPPGSCQQSTPGNNSFAQSKPPXXXXXXXXXXXXXXXXXXXXPVPNSQPINDSNITTSKEKQNVNSGLLETLLSR 4721
            ATPPISTHNLPVSATSPQLLNLDVVKSENKMSEFACNKSSMNKNNNSQMLYPISNLKEEILKNLDNSQRLQIKRIVGLYKARKIHKSTMLQQIGDFLSQALGTQNYKQHVMKFWSTQKQYTLAENVDSSLTGFNYSSVVQSPEEGPGISPTEQAAQSTTDLEEDKDHHPKPQTSKYKEKISSDASKRLVRSKSTTKNSEASIYSITSTTSTGVLETLLNEHDNTIISDKNMSTTISNNMTNSKLSISSTSKNQLSLDQLLMDDELPIFPNTDEKVPKKTSESASTRNANTKIIKSQPSTPVVSNSMGVLETLLNQKTPSMCTLRQMSTENILKHSIPSRQNSSDIFMEDSSYSFETNDKDKGLKKNSLLITLLNTSQNPEKGKMLNSSSSMEGLSPNYQTKRSRMSSGTQSMLDNSNSNKKMEDKLVSPEVDVFDFVDTEIGFGATDTQSTVVTSSQSLCTRKRAQSKRTRKRRYSKDRSVDSDGSSDQLSSLGDKYMKNSSVGSVKTDDKNIILTSLLENKKPRSILTPSTPGKVPVNAEKPDNEYTPQAMVYDNQADHDDNLDLEDIKIDDFDLENLIDISENFGESNPVEMNASVDQPTSGVNIQQSNSDPSSLVNKSVVTNSSISGAATFDVMPPVYKMIGPVIKSDPIVPMSKQSVLRVSDKNSILLSAIQSTSTSNSISFECLDNERERLLRQQQQQKVCMGGDKPSITMGHQLSLDMLSKQMKEVGPNVMVELSVPSEIPRSRKGSISRSQSGMSTISPTCNPPSLMSTSPTCRSSYQSSSSTEISMDNTKVPHTNASQVNHQQVREGLRLLVSSRSAQNISKNNMQINRANSGSLTETVPQNDIPSTPKTSVKDVLHYPSSIQSNNPNKDPSYPYSNQSYGSNVNNASEFKTADILEDSLVNDVFGLEELVNSKSRHSSANLEYSRL+IQETMSADLQIESSTFPPGSCQQSTPGNNSFAQSKPPHHHHHYTHHYHHHHQHHHHHPVPNSQPINDSNITTSKEKQNVNSGLLETLLSR
Sbjct:  171 ATPPISTHNLPVSATSPQLLNLDVVKSENKMSEFACNKSSMNKNNNSQMLYPISNLKEEILKNLDNSQRLQIKRIVGLYKARKIHKSTMLQQIGDFLSQALGTQNYKQHVMKFWSTQKQYTLAENVDSSLTGFNYSSVVQSPEEGPGISPTEQAAQSTTDLEEDKDHHPKPQTSKYKEKISSDASKRLVRSKSTTKNSEASIYSITSTTSTGVLETLLNEHDNTIISDKNMSTTISNNMTNSKLSISSTSKNQLSLDQLLMDDELPIFPNTDEKVPKKTSESASTRNANTKIIKSQPSTPVVSNSMGVLETLLNQKTPSMCTLRQMSTENILKHSIPSRQNSSDIFMEDSSYSFETNDKDKGLKKNSLLITLLNTSQNPEKGKMLNSSSSMEGLSPNYQTKRSRMSSGTQSMLDNSNSNKKMEDKLVSPEVDVFDFVDTEIGFGATDTQSTVVTSSQSLCTRKRAQSKRTRKRRYSKDRSVDSDGSSDQLSSLGDKYMKNSSVGSVKTDDKNIILTSLLENKKPRSILTPSTPGKVPVNAEKPDNEYTPQAMVYDNQADHDDNLDLEDIKIDDFDLENLIDISENFGESNPVEMNASVDQPTSGVNIQQSNSDPSSLVNKSVVTNSSISGAATFDVMPPVYKMIGPVIKSDPIVPMSKQSVLRVSDKNSILLSAIQSTSTSNSISFECLDNERERLLRQQQQQKVCMGGDKPSITMGHQLSLDMLSKQMKEVGPNVMVELSVPSEIPRSRKGSISRSQSGMSTISPTCNPPSLMSTSPTCRSSYQSSSSTEISMDNTKVPHTNASQVNHQQVREGLRLLVSSRSAQNISKNNMQINRANSGSLTETVPQNDIPSTPKTSVKDVLHYPSSIQSNNPNKDPSYPYSNQSYGSNVNNASEFKTADILEDSLVNDVFGLEELVNSKSRHSSANLEYSRLNIQETMSADLQIESSTFPPGSCQQSTPGNNSFAQSKPPHHHHHYTHHYHHHHQHHHHHPVPNSQPINDSNITTSKEKQNVNSGLLETLLSR 1196          
BLAST of SMED30017439 vs. Planmine SMEST
Match: SMESG000000381.1 (SMESG000000381.1)

HSP 1 Score: 924.85 bits (2389), Expect = 0.000e+0
Identity = 480/482 (99.59%), Postives = 480/482 (99.59%), Query Frame = 3
Query:  144 MDLIVNIFVFVLIFSNLANIEFVQGICIVINVNNTSEFQFKDQQESEMRDCIMSSKFLMKSLKIDSPFLTNIRNVITGYINTSRLETLTVTNGNISIFDISNLALPSLKTLSLPKNEIESFLFPNSNILEILNISYNKITEWNPLNYPNLLTLDLSHNDLNSFNFKTASLKFIYFSNAFSKNISSKFFQSTNNIEFMDLSKNYLSDISFLFVHNLNKLDLSFNKIQSLWSIELLTKSFTDLTINLSENPLQCSMDITKDWLNLKMRHILFTEELQCAFERSSSKYSISKYGWMLDKEELILTSIWNGTLLEAYTKTKLIKFSSITLSKGVKVGWSLEMPLDYSFVVSFLSAQKREIFSKNIRLMNDQIFEILFTSASSVTETCFLLNIPKVETTGSKNINVTITCINSLPFNSSSVLSPLGYXXXXXXXXXXXXXXXGAFVYFKFLRPSSRTREINNSIPLEMINANKETMIRRDRGTLSEI 1589
            MDLIVNIFVFVLIFSNLANIEFVQGICIVINVNNTSEFQFKDQQESEMRDCIMSSKFLMKSLKIDSPFLTNIRNVITGYINTSRLETLTVTNGNISIFDISNLALPSLKTLSLPKNEIESFLFPNSNILEILNISYNKITEWNPLNYPNLLTLDLSHNDLNSFNFKTASLKFIYFSNAFSKNISSKFFQSTNNIEFMDLSKNYLSDISFLFVHNLNKLDLSFNKIQSLWSIELLTKSFTDLTINLSENPLQCSMDITKDWLNLKMRHILFTEELQCAFERSSSKYSISKYGWMLDKEELILTSIWNGTLLEAYTKTKLIKFSSITLSKGVKVGWSLEMPLDYSFVVSFLSAQKREIFSKNIRLMNDQIFEILFTSASSVTETCFLLNIPKVETTGSKNINVTITCINSLPFNSSSVLSPLGYIIVIVFLVVLSVSLIGAFVYFKFLRPSSRTREINNSIPLEMINANKETMIRRDRG L EI
Sbjct:    1 MDLIVNIFVFVLIFSNLANIEFVQGICIVINVNNTSEFQFKDQQESEMRDCIMSSKFLMKSLKIDSPFLTNIRNVITGYINTSRLETLTVTNGNISIFDISNLALPSLKTLSLPKNEIESFLFPNSNILEILNISYNKITEWNPLNYPNLLTLDLSHNDLNSFNFKTASLKFIYFSNAFSKNISSKFFQSTNNIEFMDLSKNYLSDISFLFVHNLNKLDLSFNKIQSLWSIELLTKSFTDLTINLSENPLQCSMDITKDWLNLKMRHILFTEELQCAFERSSSKYSISKYGWMLDKEELILTSIWNGTLLEAYTKTKLIKFSSITLSKGVKVGWSLEMPLDYSFVVSFLSAQKREIFSKNIRLMNDQIFEILFTSASSVTETCFLLNIPKVETTGSKNINVTITCINSLPFNSSSVLSPLGYIIVIVFLVVLSVSLIGAFVYFKFLRPSSRTREINNSIPLEMINANKETMIRRDRGNLPEI 482          
The following BLAST results are available for this feature:
BLAST of SMED30017439 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017439 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017439 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
conv9.002e-626.96gene:FBgn0261269 transcript:FBtr0339967[more]
conv9.002e-626.96gene:FBgn0261269 transcript:FBtr0087540[more]
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BLAST of SMED30017439 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017439 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017439 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017439 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017439 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017439 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017439 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017439 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017439 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017439 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
lgr64.076e-631.71leucine rich repeat containing G protein-coupled r... [more]
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BLAST of SMED30017439 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000059833.10.000e+099.90SMESG000059833.1[more]
SMESG000000381.10.000e+099.59SMESG000000381.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30017439 ID=SMED30017439|Name=SMED30017439|organism=Schmidtea mediterranea sexual|type=transcript|length=4995bp
CGTAATTGTCATGTTATCAGAATTTGGAATATTATAGCATTTTGAATGGT
CAAGAGTATTTTTAACCGTTCTTACTTCAATGCACTTGCGAATATTATTT
CGATTAACTCATGACAATTGAACAGTTTTTTTGAATTTTCATAATGGATT
TAATTGTCAACATTTTCGTGTTTGTGCTCATTTTCAGCAACTTAGCAAAC
ATTGAATTCGTTCAAGGAATTTGCATTGTTATTAATGTCAATAATACCAG
CGAGTTTCAGTTCAAGGATCAACAGGAAAGTGAAATGAGAGATTGCATTA
TGAGTTCTAAATTTTTGATGAAATCGTTGAAAATTGATTCTCCTTTTTTG
ACAAATATTAGAAACGTTATTACAGGCTATATAAATACTTCTCGACTGGA
AACTTTGACTGTCACAAATGGCAACATTTCTATATTTGATATATCAAATT
TAGCATTGCCCAGCTTGAAGACTTTGAGTCTGCCAAAAAATGAGATTGAA
AGTTTTTTGTTCCCGAATTCTAATATATTAGAGATATTAAATATAAGTTA
TAACAAGATAACAGAGTGGAATCCATTAAATTATCCTAATCTCTTGACTC
TGGATTTGTCTCACAATGATTTAAACAGCTTTAATTTTAAAACTGCAAGT
CTCAAATTTATCTATTTCTCAAATGCTTTCTCTAAAAATATATCTTCTAA
ATTCTTTCAATCTACAAATAATATAGAATTTATGGATCTTTCTAAAAATT
ATCTTTCCGACATTTCATTTTTGTTTGTACATAATCTGAACAAATTGGAT
CTCAGCTTCAATAAAATACAAAGTTTATGGAGCATTGAATTGTTAACAAA
GTCTTTTACGGATCTAACAATCAATTTGTCCGAAAACCCTTTGCAATGCT
CAATGGATATCACCAAAGATTGGTTAAACCTGAAAATGAGACACATCCTA
TTTACAGAAGAATTGCAATGTGCTTTTGAAAGGTCTTCTAGCAAATATTC
AATTAGTAAATATGGTTGGATGCTGGATAAAGAAGAGCTGATATTGACTT
CAATTTGGAACGGAACTTTGCTCGAGGCTTATACAAAAACAAAACTTATC
AAGTTTTCTTCTATCACACTGTCAAAAGGAGTGAAAGTCGGGTGGAGCCT
TGAAATGCCGCTTGACTATAGCTTTGTTGTTTCATTTTTGTCAGCTCAAA
AAAGAGAAATATTTTCAAAAAATATTCGATTGATGAATGACCAGATCTTT
GAAATACTATTTACCAGTGCTTCATCGGTCACTGAGACATGCTTCCTGTT
GAATATCCCTAAAGTTGAGACAACGGGAAGCAAAAATATTAATGTCACAA
TAACTTGTATAAATTCTTTGCCATTTAATTCTTCAAGCGTTTTATCTCCA
TTGGGATATATAATTGTCATCGTATTCCTGGTTGTTTTATCCGTCAGTTT
GATAGGAGCATTTGTTTACTTCAAATTCCTAAGGCCTTCAAGCAGAACTC
GTGAAATAAACAATTCAATTCCGCTAGAAATGATAAATGCGAATAAAGAA
ACAATGATAAGAAGAGACAGAGGAACTTTGTCAGAAATCAACAACAACAA
CAACAACAGCAATAACAATAGTAATAATACAACTTCCACTACTGCAACGC
CTCCAATTTCCACACATAATTTACCAGTTTCCGCTACCAGTCCACAATTA
TTGAATTTAGATGTTGTCAAATCTGAAAATAAGATGTCGGAGTTTGCTTG
TAATAAGTCATCAATGAATAAGAATAACAATTCCCAGATGCTTTATCCCA
TCTCCAATTTGAAGGAAGAAATTCTGAAAAATCTCGATAATTCTCAACGC
CTACAGATAAAAAGAATTGTTGGTTTGTATAAGGCTAGAAAAATCCATAA
AAGTACAATGTTACAGCAAATAGGAGATTTCTTAAGTCAAGCTCTTGGAA
CTCAAAATTATAAACAACACGTTATGAAGTTTTGGAGCACGCAAAAACAA
TATACATTGGCGGAAAATGTTGACTCCTCACTGACTGGATTCAATTATTC
AAGTGTAGTTCAAAGTCCTGAAGAGGGCCCGGGGATTTCTCCAACTGAAC
AGGCGGCTCAGTCTACGACGGATTTAGAAGAAGATAAAGATCATCATCCG
AAACCTCAAACAAGCAAATATAAAGAAAAGATATCGTCTGATGCTAGTAA
AAGGCTTGTTCGATCAAAATCAACTACGAAAAATTCCGAAGCTTCTATTT
ATAGTATAACATCAACAACATCTACTGGAGTATTGGAGACATTGTTGAAT
GAACATGATAATACAATAATATCGGATAAAAATATGAGCACTACCATCTC
TAATAACATGACCAATTCCAAACTCTCTATTTCTTCTACTTCAAAAAACC
AGTTGTCTCTAGATCAGCTTTTAATGGATGATGAGCTTCCGATTTTCCCT
AATACGGATGAAAAGGTTCCGAAGAAAACATCGGAATCAGCGTCGACAAG
AAATGCCAACACTAAAATAATTAAATCGCAACCATCTACTCCTGTGGTAT
CTAATAGTATGGGAGTGCTGGAAACTCTTCTCAATCAAAAAACTCCGTCG
ATGTGTACCTTGAGACAAATGTCAACAGAAAATATTCTTAAACATTCCAT
TCCGTCTCGCCAAAATTCCTCGGATATCTTTATGGAAGACTCCAGCTATT
CTTTTGAAACTAATGACAAAGATAAAGGATTGAAGAAAAATTCATTATTA
ATCACACTACTAAATACCAGTCAAAATCCCGAAAAAGGAAAAATGCTAAA
TTCTTCATCATCTATGGAAGGCTTGTCGCCAAATTATCAAACCAAGCGTT
CCCGTATGTCGTCAGGAACGCAGTCAATGCTTGATAATTCCAACTCCAAT
AAAAAAATGGAGGATAAATTAGTTTCCCCTGAAGTTGACGTATTTGATTT
CGTGGATACGGAGATTGGATTTGGTGCCACGGATACGCAGTCGACTGTTG
TTACGTCGAGCCAATCGCTTTGTACTAGGAAACGGGCGCAGTCGAAACGC
ACAAGAAAGCGTCGTTATTCAAAAGATAGATCCGTTGACAGCGATGGGAG
TAGCGATCAGTTGTCTTCTCTTGGGGATAAGTACATGAAAAATTCATCAG
TTGGCAGCGTTAAAACCGATGACAAAAATATCATTCTTACATCGCTATTG
GAAAACAAAAAACCGAGAAGTATTTTAACACCTTCAACGCCTGGAAAAGT
GCCTGTGAATGCTGAAAAGCCAGACAATGAATATACTCCACAAGCTATGG
TTTATGACAATCAAGCAGATCATGACGATAATCTCGATTTGGAGGATATC
AAAATCGACGATTTTGATTTGGAGAATTTGATTGATATATCTGAGAATTT
CGGTGAATCAAATCCCGTTGAAATGAACGCATCTGTTGACCAGCCTACGA
GTGGGGTCAATATCCAACAATCTAATAGCGATCCGTCATCACTGGTTAAT
AAATCCGTTGTAACGAATTCAAGCATTTCTGGTGCTGCCACTTTTGATGT
GATGCCACCAGTATATAAAATGATCGGACCAGTGATTAAATCTGATCCCA
TTGTGCCAATGTCAAAACAGTCAGTTCTGCGAGTGTCAGATAAAAACAGT
ATTTTATTATCTGCTATTCAATCAACTTCTACTAGTAACTCTATCAGTTT
CGAGTGTTTAGATAATGAAAGAGAGAGATTATTGCGTCAACAACAGCAAC
AAAAAGTTTGCATGGGGGGTGATAAACCTTCAATAACTATGGGTCATCAA
TTGTCATTGGATATGTTATCGAAGCAAATGAAAGAAGTTGGTCCAAATGT
TATGGTAGAATTGTCAGTTCCTTCAGAAATACCTCGATCAAGAAAAGGTA
GTATTTCTCGAAGTCAATCTGGAATGTCCACGATATCTCCAACGTGTAAT
CCACCGAGCTTAATGTCGACGTCGCCGACTTGTCGATCATCATATCAGTC
GTCTAGTTCAACTGAAATTTCAATGGATAACACAAAGGTTCCACATACTA
ATGCAAGTCAAGTCAATCATCAGCAAGTTCGTGAAGGCTTGAGGTTGTTG
GTCAGCAGTCGATCAGCTCAAAATATTTCCAAAAACAACATGCAAATTAA
CCGAGCCAATTCTGGGAGTTTGACTGAAACTGTACCTCAAAATGATATTC
CATCAACTCCCAAAACCTCTGTGAAAGATGTATTACATTATCCATCAAGT
ATCCAATCGAATAACCCCAATAAAGATCCATCATATCCCTACTCAAATCA
GTCTTACGGTTCAAATGTTAATAATGCCAGTGAATTTAAAACTGCGGATA
TTCTTGAAGATTCTCTTGTCAATGACGTCTTTGGATTGGAAGAACTTGTC
AACAGCAAATCTCGTCATTCTAGTGCAAATCTAGAATACTCAAGATTGGA
TATACAAGAAACCATGAGTGCTGATCTTCAAATCGAATCATCGACATTTC
CACCAGGGAGCTGTCAACAAAGTACTCCTGGAAATAATTCATTTGCTCAG
TCTAAACCGCCTCATCATCATCACCATTATACTCATCACTATCACCATCA
TCACCAACATCATCACCATCACCCGGTTCCCAATTCACAGCCGATTAACG
ACTCAAATATCACCACATCTAAAGAGAAACAAAACGTAAATTCTGGACTT
TTAGAAACCCTTTTATCTAGATAAACTCCAGAGTCTCCTATCAGTGCTGC
TTTATAATTACCATTGACTATATGAAGATTATCAATAAATATGCCAGAGA
TTTGCCAGTTTTCATTAACTATCGATTTGATAAAAACGGTTTTATTATTC
TTATTATTATTATATTTGTGTGGTTATGTAAATGTTTATCCAAAACATGT
TATGCGCCTCAATTCTTGATGTAAACCATTTATTATTTATTTGAACTTTA
TATCTAATCGATAATATCACTATCGATTGATGTGAAGTATAAATA
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protein sequence of SMED30017439-orf-1

>SMED30017439-orf-1 ID=SMED30017439-orf-1|Name=SMED30017439-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1527bp
MDLIVNIFVFVLIFSNLANIEFVQGICIVINVNNTSEFQFKDQQESEMRD
CIMSSKFLMKSLKIDSPFLTNIRNVITGYINTSRLETLTVTNGNISIFDI
SNLALPSLKTLSLPKNEIESFLFPNSNILEILNISYNKITEWNPLNYPNL
LTLDLSHNDLNSFNFKTASLKFIYFSNAFSKNISSKFFQSTNNIEFMDLS
KNYLSDISFLFVHNLNKLDLSFNKIQSLWSIELLTKSFTDLTINLSENPL
QCSMDITKDWLNLKMRHILFTEELQCAFERSSSKYSISKYGWMLDKEELI
LTSIWNGTLLEAYTKTKLIKFSSITLSKGVKVGWSLEMPLDYSFVVSFLS
AQKREIFSKNIRLMNDQIFEILFTSASSVTETCFLLNIPKVETTGSKNIN
VTITCINSLPFNSSSVLSPLGYIIVIVFLVVLSVSLIGAFVYFKFLRPSS
RTREINNSIPLEMINANKETMIRRDRGTLSEINNNNNNSNNNSNNTTSTT
ATPPISTHNLPVSATSPQLLNLDVVKSENKMSEFACNKSSMNKNNNSQML
YPISNLKEEILKNLDNSQRLQIKRIVGLYKARKIHKSTMLQQIGDFLSQA
LGTQNYKQHVMKFWSTQKQYTLAENVDSSLTGFNYSSVVQSPEEGPGISP
TEQAAQSTTDLEEDKDHHPKPQTSKYKEKISSDASKRLVRSKSTTKNSEA
SIYSITSTTSTGVLETLLNEHDNTIISDKNMSTTISNNMTNSKLSISSTS
KNQLSLDQLLMDDELPIFPNTDEKVPKKTSESASTRNANTKIIKSQPSTP
VVSNSMGVLETLLNQKTPSMCTLRQMSTENILKHSIPSRQNSSDIFMEDS
SYSFETNDKDKGLKKNSLLITLLNTSQNPEKGKMLNSSSSMEGLSPNYQT
KRSRMSSGTQSMLDNSNSNKKMEDKLVSPEVDVFDFVDTEIGFGATDTQS
TVVTSSQSLCTRKRAQSKRTRKRRYSKDRSVDSDGSSDQLSSLGDKYMKN
SSVGSVKTDDKNIILTSLLENKKPRSILTPSTPGKVPVNAEKPDNEYTPQ
AMVYDNQADHDDNLDLEDIKIDDFDLENLIDISENFGESNPVEMNASVDQ
PTSGVNIQQSNSDPSSLVNKSVVTNSSISGAATFDVMPPVYKMIGPVIKS
DPIVPMSKQSVLRVSDKNSILLSAIQSTSTSNSISFECLDNERERLLRQQ
QQQKVCMGGDKPSITMGHQLSLDMLSKQMKEVGPNVMVELSVPSEIPRSR
KGSISRSQSGMSTISPTCNPPSLMSTSPTCRSSYQSSSSTEISMDNTKVP
HTNASQVNHQQVREGLRLLVSSRSAQNISKNNMQINRANSGSLTETVPQN
DIPSTPKTSVKDVLHYPSSIQSNNPNKDPSYPYSNQSYGSNVNNASEFKT
ADILEDSLVNDVFGLEELVNSKSRHSSANLEYSRLDIQETMSADLQIESS
TFPPGSCQQSTPGNNSFAQSKPPHHHHHYTHHYHHHHQHHHHHPVPNSQP
INDSNITTSKEKQNVNSGLLETLLSR*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000034epidermis
PLANA:0000070intestinal phagocyte
PLANA:0000099neuron
PLANA:0000101muscle cell
PLANA:0002056medial muscle cell
PLANA:0003001lateral region of the whole animal
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding
GO:0004672protein kinase activity
GO:0005524ATP binding
GO:0016301kinase activity
Vocabulary: biological process
TermDefinition
GO:0006468protein phosphorylation
GO:0016310phosphorylation
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3DG3DSA:3.80.10.10coord: 29..164
e-value: 2.8E-8
score: 34.9
IPR032675Leucine-rich repeat domain superfamilyGENE3DG3DSA:3.80.10.10coord: 165..292
e-value: 1.0E-12
score: 49.7
NoneNo IPR availablePANTHERPTHR24373SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEINcoord: 82..293
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..25
score: 0.662
NoneNo IPR availableSUPERFAMILYSSF52058L domain-likecoord: 60..265
NoneNo IPR availableTMHMMTMhelixcoord: 421..443
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 214..235
score: 8.913
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 84..104
score: 4.562
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 150..170
score: 5.818
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 128..149
score: 6.873
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 107..127
score: 5.178
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 193..213
score: 5.987