SMED30017300
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30017300 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 16Note: Hover over icons to view figure legend
Alignments
SMED30017300 aligns in the following genomic locations:
Homology
BLAST of SMED30017300 vs. Ensembl Xenopus
Match: ntf4 (neurotrophin 4 [Source:Xenbase;Acc:XB-GENE-1013492]) HSP 1 Score: 51.2174 bits (121), Expect = 1.866e-6 Identity = 26/89 (29.21%), Postives = 46/89 (51.69%), Query Frame = -1 Query: 279 GFGLRSPWNLRSPLNLRSP*IFLGXXXXXXXXXXXXXXXXXXXXSNLRSPLNLRSPSNLRSPLNLRSPSNLRSPLNLRSPLNLRSPLNL 545 G +R P +LR PL++R P G S ++R PL++R P ++R P ++R P ++R P ++R P ++R P ++ Sbjct: 791 GPDMRGPQDLRGPLDMRGPQDMRGPPDMRGPQDMRGPSDMGGPQ-DIRGPLDMRGPQDIRGPSDMRGPQDMRGPPDMRGPQDIRGPPDM 878 HSP 2 Score: 49.6766 bits (117), Expect = 5.370e-6 Identity = 24/86 (27.91%), Postives = 43/86 (50.00%), Query Frame = -1 Query: 279 LRSPWNLRSPLNLRSP*IFLGXXXXXXXXXXXXXXXXXXXXSNLRSPLNLRSPSNLRSPLNLRSPSNLRSPLNLRSPLNLRSPLNL 536 +R P +LR P ++R P G +LR PL++R P ++R P ++R P ++R P ++ P ++R PL++ Sbjct: 770 MRGPADLRGPNDMRGPQDMRGGPDMRGPQ-------------DLRGPLDMRGPQDMRGPPDMRGPQDMRGPSDMGGPQDIRGPLDM 842
BLAST of SMED30017300 vs. Ensembl Xenopus
Match: ntf4 (neurotrophin 4 [Source:Xenbase;Acc:XB-GENE-1013492]) HSP 1 Score: 50.447 bits (119), Expect = 3.856e-6 Identity = 26/89 (29.21%), Postives = 46/89 (51.69%), Query Frame = -1 Query: 279 GFGLRSPWNLRSPLNLRSP*IFLGXXXXXXXXXXXXXXXXXXXXSNLRSPLNLRSPSNLRSPLNLRSPSNLRSPLNLRSPLNLRSPLNL 545 G +R P +LR PL++R P G S ++R PL++R P ++R P ++R P ++R P ++R P ++R P ++ Sbjct: 791 GPDMRGPQDLRGPLDMRGPQDMRGPPDMRGPQDMRGPSDMGGPQ-DIRGPLDMRGPQDIRGPSDMRGPQDMRGPPDMRGPQDIRGPPDM 878
BLAST of SMED30017300 vs. TrEMBL
Match: A0A4Z2EJI4 (Processed variable antigen OS=Liparis tanakae OX=230148 GN=PVA_2 PE=4 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.216e-13 Identity = 48/97 (49.48%), Postives = 55/97 (56.70%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDRRPNPRFNGEHKTN 573 +GERK +GERK NGERK GERK +GERK GERK NGERK GERK +KI GERK +GERK + NGE K + Sbjct: 7 MSGERKMSGERKTNGERKMSGERKMSGERKMSGERKTNGERKTNGERK-------------MSRDRKIIGERKMSGERKI-----TERKMNGERKMS 85 HSP 2 Score: 63.1586 bits (152), Expect = 7.018e-8 Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXX-----XXXXXXXXXXXXXXXIYGERKFNGERKFQGDRRPN 543 NGERK +GERK +GERK ERK + ERK ERK +GERK GERK+ + + V +K+ ERK + ERK G+R+ + Sbjct: 78 MNGERKMSGERKMSGERKMSRERKMSRERKMSRERKMSGERKMSGERKMSVQRKMSVQRKMSRERKMSVQRKMSRERKMSRERKMSGERKTS 169 HSP 3 Score: 59.3066 bits (142), Expect = 1.317e-6 Identity = 37/80 (46.25%), Postives = 42/80 (52.50%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKF 522 +GERK ERK NGERK GERK +GERK ERK + ERK ERK + GERK +GERK Sbjct: 67 MSGERKIT-ERKMNGERKMSGERKMSGERKMSRERKMSRERKMSRERK-------------------MSGERKMSGERKM 126
BLAST of SMED30017300 vs. TrEMBL
Match: Q9Y1C8 (CG2 omega repeat (Fragment) OS=Plasmodium falciparum OX=5833 GN=cg2 PE=4 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.082e-10 Identity = 33/99 (33.33%), Postives = 50/99 (50.51%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDRRPN--PRFNGEHKTN 573 NG+ K NG+ K NG+ K +G+ K NG+ K +G+ K NG+ K G+ K + G+ K NG+ K GD + N + NG++K N Sbjct: 6 MNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNK-------------------MNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMN 85 HSP 2 Score: 62.7734 bits (151), Expect = 2.383e-8 Identity = 30/91 (32.97%), Postives = 44/91 (48.35%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDRRPNPRFN 555 NG+ K NG+ K NG+ K +G+ K NG+ K +G+ K NG+ K G+ K + G+ K NG+ K GD + N N Sbjct: 42 MNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNK-------------------MNGDNKMNGDNKMNGDNKMNGDDN 113 HSP 3 Score: 62.3882 bits (150), Expect = 3.425e-8 Identity = 31/96 (32.29%), Postives = 48/96 (50.00%), Query Frame = 1 Query: 292 ERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDRRPN--PRFNGEHKTN 573 + K NG+ K NG+ K +G+ K NG+ K +G+ K NG+ K G+ K + G+ K NG+ K GD + N + NG++K N Sbjct: 3 DNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNK-------------------MNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMN 79 HSP 4 Score: 62.3882 bits (150), Expect = 3.493e-8 Identity = 30/91 (32.97%), Postives = 43/91 (47.25%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDRRPNPRFN 555 NG+ K NG+ K NG+ K +G+ K NG+ K +G+ K NG+ K G+ K + G+ K NG+ K GD N N Sbjct: 48 MNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNK-------------------MNGDNKMNGDNKMNGDDNKNCDDN 119
BLAST of SMED30017300 vs. TrEMBL
Match: A0A226DVM6 (Myosin light chain kinase, smooth muscle OS=Folsomia candida OX=158441 GN=Fcan01_15676 PE=4 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.202e-9 Identity = 42/84 (50.00%), Postives = 43/84 (51.19%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDR 534 F GER F GER F GER F GER F GER F GER F GER F GER GER F GER F G+R Sbjct: 160 FGGERPFGGERPFGGERPFGGERPFGGERPFGGERPFGGERPFGGERP-------------------FGGERPFGGERPFGGER 224 HSP 2 Score: 68.5514 bits (166), Expect = 2.202e-9 Identity = 42/84 (50.00%), Postives = 43/84 (51.19%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDR 534 F GER F GER F GER F GER F GER F GER F GER F GER GER F GER F G+R Sbjct: 166 FGGERPFGGERPFGGERPFGGERPFGGERPFGGERPFGGERPFGGERP-------------------FGGERPFGGERPFGGER 230 HSP 3 Score: 68.5514 bits (166), Expect = 2.202e-9 Identity = 42/84 (50.00%), Postives = 43/84 (51.19%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDR 534 F GER F GER F GER F GER F GER F GER F GER F GER GER F GER F G+R Sbjct: 172 FGGERPFGGERPFGGERPFGGERPFGGERPFGGERPFGGERPFGGERP-------------------FGGERPFGGERPFGGER 236 HSP 4 Score: 66.2402 bits (160), Expect = 1.220e-8 Identity = 41/84 (48.81%), Postives = 42/84 (50.00%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDR 534 F G R F GER F GER F GER F GER F GER F GER F GER GER F GER F G+R Sbjct: 154 FGGRRPFGGERPFGGERPFGGERPFGGERPFGGERPFGGERPFGGERP-------------------FGGERPFGGERPFGGER 218 HSP 5 Score: 63.929 bits (154), Expect = 7.710e-8 Identity = 40/84 (47.62%), Postives = 41/84 (48.81%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDR 534 F GE F G R F GER F GER F GER F GER F GER F GER GER F GER F G+R Sbjct: 148 FGGETPFGGRRPFGGERPFGGERPFGGERPFGGERPFGGERPFGGERP-------------------FGGERPFGGERPFGGER 212 HSP 6 Score: 62.7734 bits (151), Expect = 1.710e-7 Identity = 40/84 (47.62%), Postives = 42/84 (50.00%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDR 534 F GER F GER F GER F GER F GER F GER F GER F GER GER F E+ F G+R Sbjct: 184 FGGERPFGGERPFGGERPFGGERPFGGERPFGGERPFGGERPFGGERP-------------------FGGERPFGEEKPFGGER 248 HSP 7 Score: 61.2326 bits (147), Expect = 6.202e-7 Identity = 38/84 (45.24%), Postives = 41/84 (48.81%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDR 534 F GER F G++ F GE F G R F GER F GER F GER F GER GER F GER F G+R Sbjct: 136 FGGERPFGGQQPFGGETPFGGRRPFGGERPFGGERPFGGERPFGGERP-------------------FGGERPFGGERPFGGER 200 HSP 8 Score: 59.6918 bits (143), Expect = 1.792e-6 Identity = 37/84 (44.05%), Postives = 42/84 (50.00%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDR 534 F+GER F GE+ F GER F G++ F GE F G R F GER F GER GER F GER F G+R Sbjct: 124 FSGERPFGGEKPFGGERPFGGQQPFGGETPFGGRRPFGGERPFGGERP-------------------FGGERPFGGERPFGGER 188 HSP 9 Score: 58.151 bits (139), Expect = 5.820e-6 Identity = 36/84 (42.86%), Postives = 42/84 (50.00%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDR 534 F GE+ F+GER F GE+ F GER F G++ F GE F G R F GER GER F GER F G+R Sbjct: 118 FGGEKPFSGERPFGGEKPFGGERPFGGQQPFGGETPFGGRRPFGGERP-------------------FGGERPFGGERPFGGER 182
BLAST of SMED30017300 vs. TrEMBL
Match: Q9Y1C9 (CG2 omega repeat (Fragment) OS=Plasmodium falciparum OX=5833 GN=cg2 PE=4 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 2.378e-9 Identity = 33/99 (33.33%), Postives = 50/99 (50.51%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDRRPNP--RFNGEHKTN 573 NG+ K NG+ K NG+ K +G+ K NG+ K +G+ K NG+ K G+ K + G+ K NG+ K GD + N + NG++K N Sbjct: 6 MNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNK-------------------MNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMN 85 HSP 2 Score: 61.2326 bits (147), Expect = 8.288e-8 Identity = 31/96 (32.29%), Postives = 48/96 (50.00%), Query Frame = 1 Query: 292 ERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDRRPNP--RFNGEHKTN 573 + K NG+ K NG+ K +G+ K NG+ K +G+ K NG+ K G+ K + G+ K NG+ K GD + N + NG++K N Sbjct: 3 DNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNK-------------------MNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMN 79
BLAST of SMED30017300 vs. TrEMBL
Match: Q9Y1D0 (CG2 omega repeat (Fragment) OS=Plasmodium falciparum OX=5833 GN=cg2 PE=4 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 2.298e-8 Identity = 32/97 (32.99%), Postives = 48/97 (49.48%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDRRPNPRFNGEHKTN 573 NG+ K NG+ K NG+ K +G+ K NG+ K +G+ K NG+ K G+ K + G+ K NG+ K GD + NG++K N Sbjct: 6 MNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNK-------------------MNGDNKMNGDNKMNGDN----KMNGDNKMN 79 HSP 2 Score: 58.9214 bits (141), Expect = 3.740e-7 Identity = 30/93 (32.26%), Postives = 45/93 (48.39%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDRRPNPRFNGE 561 NG+ K NG+ K NG+ K +G+ K NG+ K +G+ K NG+ K G+ K + G+ K NG+ K GD + NG+ Sbjct: 18 MNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNKMNGDNK-------------------MNGDNKMNGDNKMNGDDN---KINGD 88
BLAST of SMED30017300 vs. Ensembl Cavefish
Match: ENSAMXT00000036126.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02002170.1:43992:45866:1 gene:ENSAMXG00000037999.1 transcript:ENSAMXT00000036126.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 64.3142 bits (155), Expect = 6.039e-12 Identity = 32/99 (32.32%), Postives = 51/99 (51.52%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDRRPNP--RFNGEHKTN 573 N +RK N +RK N +RK + +RK N +RK + +RK N +RK +RK + + +K +RK N +RK R+ N + N + K+N Sbjct: 7 SNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSNSQRK-SNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSN 104 HSP 2 Score: 64.3142 bits (155), Expect = 6.039e-12 Identity = 32/99 (32.32%), Postives = 51/99 (51.52%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDRRPNP--RFNGEHKTN 573 N +RK N +RK N +RK + +RK N +RK + +RK N +RK +RK + + +K +RK N +RK R+ N + N + K+N Sbjct: 43 SNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSNSQRK-SNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSN 140 HSP 3 Score: 64.3142 bits (155), Expect = 6.039e-12 Identity = 32/99 (32.32%), Postives = 51/99 (51.52%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDRRPNP--RFNGEHKTN 573 N +RK N +RK N +RK + +RK N +RK + +RK N +RK +RK + + +K +RK N +RK R+ N + N + K+N Sbjct: 79 SNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSNSQRK-SNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSN 176 HSP 4 Score: 59.6918 bits (143), Expect = 2.482e-10 Identity = 27/84 (32.14%), Postives = 39/84 (46.43%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDR 534 N +RK N +RK N +RK + +RK N +RK + +RK N +RK +RK +RK N +RK R Sbjct: 115 SNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSNSQRKSNSQRK-------------------SNSQRKSNSQRKSNSQR 179
BLAST of SMED30017300 vs. Ensembl Cavefish
Match: ENSAMXT00000055096.1 (pep primary_assembly:Astyanax_mexicanus-2.0:9:35631276:35636199:1 gene:ENSAMXG00000041763.1 transcript:ENSAMXT00000055096.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 51.2174 bits (121), Expect = 1.129e-7 Identity = 21/84 (25.00%), Postives = 46/84 (54.76%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDR 534 +G++ NG++ NG++ +G++ NG++ DG++ NG++ G+ K V + K +YG++ NG++ +G + Sbjct: 36 VDGQKPMNGQKPVNGQKPVNGQKPMNGQKPLDGKKPVNGQKPVNGQ-KPMNGQKPVVWQDPVNKQKPMYGQKPVNGQKPVKGQK 118
BLAST of SMED30017300 vs. Ensembl Cavefish
Match: ENSAMXT00000057184.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000027.1:8208865:8212505:1 gene:ENSAMXG00000031651.1 transcript:ENSAMXT00000057184.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 51.6026 bits (122), Expect = 1.624e-7 Identity = 23/84 (27.38%), Postives = 41/84 (48.81%), Query Frame = 1 Query: 283 FNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDR 534 G+R NG+R NG++ G++ G+R +G+R NG+R +G++ + P + G+R NG++ G R Sbjct: 1 MAGQRPVNGQRPVNGQKPVAGQKPVAGQRSVNGQRSVNGQRPVQGQKP-----VAGQRRMKGQRPVLVNGQRLVNGQKPVPGQR 79
BLAST of SMED30017300 vs. Planmine SMEST
Match: SMESG000001317.1 (SMESG000001317.1) HSP 1 Score: 356.295 bits (913), Expect = 3.842e-123 Identity = 281/301 (93.36%), Postives = 286/301 (95.02%), Query Frame = 1 Query: 70 MAGFKVGSKFSILMDDDFEELDSEHLILKKMKDAKIDAENKKVELEKIXXXXXXXXXXXXXXXXXXXXXXXFNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERK------XXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDRRPNPRFNGEHKTNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITMTLSEWKKSNGIXXXXXXXXXXXPELIKVRFNNANRDARRQFTDRKPFNGAERKPFNAGVKKPFNGEKKFNKTVEEKXXXXXXFNLEDDFPA 954 MAGFKVGSKFSILMDDDFEELDSEHLILKKMKDAKIDAENKKVELEKIKADNEKEKLKAEAEKAKENKKPKFNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERK VKE+NTEEVEGEEKVVPKKIYGERKFNGERKFQGDR+PNPRFNGEHKTNNVEAEVAAAVAPEI+EAVIAEV + +E E MTLSEWKKSNGIAVEEKVEEAAKPELIKVRFNNANRDARRQFTDRKPFNGAERKPFNAGVKKPFNGEKKFNKTVEEKVAVAAAFNLEDDFPA Sbjct: 1 MAGFKVGSKFSILMDDDFEELDSEHLILKKMKDAKIDAENKKVELEKIKADNEKEKLKAEAEKAKENKKPKFNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKFNGERKVKEVNTEEVEGEEKVVPKKIYGERKFNGERKFQGDRKPNPRFNGEHKTNNVEAEVAAAVAPEIIEAVIAEVVEEPKEEVPEEPIMTLSEWKKSNGIAVEEKVEEAAKPELIKVRFNNANRDARRQFTDRKPFNGAERKPFNAGVKKPFNGEKKFNKTVEEKVAVAAAFNLEDDFPA 301
BLAST of SMED30017300 vs. Planmine SMEST
Match: SMESG000001317.1 (SMESG000001317.1) HSP 1 Score: 318.546 bits (815), Expect = 1.086e-108 Identity = 256/295 (86.78%), Postives = 264/295 (89.49%), Query Frame = 1 Query: 70 MAGFKVGSKFSILMDDDFEELDSEHLILKKMKDAKIDAENKKVELEKIXXXXXXXXXXXXXXXXXXXXXXXFNGERKFNGERKFNGERKFDGERKFNGERKFDGERKFNGERKFEGERKXXXXXXXXXXXXXXXXXXXIYGERKFNGERKFQGDRRPNPRFNGEHKTNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITMTLSEWKKSNGIXXXXXXXXXXXPELIKVRFNNANRDARRQFTDRKPFNGAERKPFNAGVKKPFNGEKKFNKTVEEKXXXXXXFNLEDDFPA 954 MAGFKVGSKFSILMDDDFEELDSEHLILKKMKDAKIDAENKKVELEKIKADNEKEKLKAEAEKA K N + KFNGERKF+GERKFNGERKFDGERKFNGERK + E+NTEEVEGEEKVVPKKIYGERKFNGERKFQGDR+PNPRFNGEHKTNNVEAEVAAAVAPEI+EAVIAEV + +E E MTLSEWKKSNGIAVEEKVEEAAKPELIKVRFNNANRDARRQFTDRKPFNGAERKPFNAGVKKPFNGEKKFNKTVEEKVAVAAAFNLEDDFPA Sbjct: 1 MAGFKVGSKFSILMDDDFEELDSEHLILKKMKDAKIDAENKKVELEKIKADNEKEKLKAEAEKA------------KENKKPKFNGERKFNGERKFNGERKFDGERKFNGERKVK------EVNTEEVEGEEKVVPKKIYGERKFNGERKFQGDRKPNPRFNGEHKTNNVEAEVAAAVAPEIIEAVIAEVVEEPKEEVPEEPIMTLSEWKKSNGIAVEEKVEEAAKPELIKVRFNNANRDARRQFTDRKPFNGAERKPFNAGVKKPFNGEKKFNKTVEEKVAVAAAFNLEDDFPA 277 The following BLAST results are available for this feature:
BLAST of SMED30017300 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30017300 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30017300 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30017300 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30017300 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of SMED30017300 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30017300 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30017300 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30017300 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 3
BLAST of SMED30017300 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30017300 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30017300 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30017300 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30017300 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30017300 ID=SMED30017300|Name=SMED30017300|organism=Schmidtea mediterranea sexual|type=transcript|length=1013bpback to top protein sequence of SMED30017300-orf-1 >SMED30017300-orf-1 ID=SMED30017300-orf-1|Name=SMED30017300-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=297bp MAGFKVGSKFSILMDDDFEELDSEHLILKKMKDAKIDAENKKVELEKIKAback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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