nuclear factor Y complex B2

Overview


Name	nuclear factor Y complex B2 (AKG62117.1)
Smed ID	SMED30017282
Length (bp)	897

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of nuclear factor Y complex B2 (SMED30017282) t-SNE clustered cells

Violin plots show distribution of expression levels for nuclear factor Y complex B2 (SMED30017282) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of nuclear factor Y complex B2 (SMED30017282) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for nuclear factor Y complex B2 (SMED30017282) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30017282

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 7

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
pharynx	SMED30017282	SMESG000040141.1	KU366700	smed_ncbi_20200123	PMID:27304889 Iyer et al., 2016
head region	SMED30017282	SMESG000040141.1	KU366700	smed_ncbi_20200123	PMID:27304889 Iyer et al., 2016
copulatory region	SMED30017282	SMESG000040141.1	KU366700	smed_ncbi_20200123	PMID:27304889 Iyer et al., 2016
X1 cell	SMED30017282	SMESG000040141.1	SmedASXL_005154	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30017282	SMESG000040141.1	SmedASXL_005154	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
nervous system	SMED30017282	SMESG000040141.1 SMESG000040140.1	dd_Smed_v4_2532_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30017282	SMESG000040141.1 SMESG000040140.1	dd_Smed_v4_2532_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017

Note: Hover over icons to view figure legend

Homology

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BLAST of nuclear factor Y complex B2 vs. Ensembl Human
Match: NFYB (nuclear transcription factor Y subunit beta [Source:HGNC Symbol;Acc:HGNC:7805])

HSP 1 Score: 152.525 bits (384), Expect = 9.212e-45
Identity = 68/100 (68.00%), Postives = 85/100 (85.00%), Query Frame = 1

Query:  253 LREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSI 552
             REQD +LPIANV++IMK A+P  GKI+K+AKE VQECVSE+ISFITSEA+E+C QEKRKTINGED+L+AM+ LGF+  VEPL+L+L K+REA K +  I
Sbjct:   52 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGI 151

[Close]

Query:  253 LREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSI 552
             REQD +LPIANV++IMK A+P  GKI+K+AKE VQECVSE+ISFITSEA+E+C QEKRKTINGED+L+AM+ LGF+  VEPL+L+L K+REA K +  I
Sbjct:   52 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGI 151

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BLAST of nuclear factor Y complex B2 vs. Ensembl Human
Match: NFYB (nuclear transcription factor Y subunit beta [Source:HGNC Symbol;Acc:HGNC:7805])

HSP 1 Score: 152.14 bits (383), Expect = 1.126e-44
Identity = 68/100 (68.00%), Postives = 85/100 (85.00%), Query Frame = 1

Query:  253 LREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSI 552
             REQD +LPIANV++IMK A+P  GKI+K+AKE VQECVSE+ISFITSEA+E+C QEKRKTINGED+L+AM+ LGF+  VEPL+L+L K+REA K +  I
Sbjct:   53 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGI 152

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BLAST of nuclear factor Y complex B2 vs. Ensembl Human
Match: POLE3 (DNA polymerase epsilon 3, accessory subunit [Source:HGNC Symbol;Acc:HGNC:13546])

HSP 1 Score: 63.5438 bits (153), Expect = 8.213e-12
Identity = 35/94 (37.23%), Postives = 54/94 (57.45%), Query Frame = 1

Query:  256 REQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANK 537
            R +D  LP A +++I+K+A+P    ISKEA+  +    S ++ + TS A     + KRKT+N  D+L AM  + F++ V PL+  L  YR   K
Sbjct:    4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQK 97

[Close]

Query:  256 REQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANK 537
            R +D  LP A +++I+K+A+P    ISKEA+  +    S ++ + TS A     + KRKT+N  D+L AM  + F++ V PL+  L  YR   K
Sbjct:    4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQK 97

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BLAST of nuclear factor Y complex B2 vs. Ensembl Celegans
Match: nfyb-1 (Nuclear transcription Factor Y, B (Beta) subunit [Source:UniProtKB/TrEMBL;Acc:A0A0M7RFF4])

HSP 1 Score: 120.553 bits (301), Expect = 3.361e-31
Identity = 57/100 (57.00%), Postives = 72/100 (72.00%), Query Frame = 1

Query:  253 LREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSI 552
            L +Q+RFLPIANV +IMK  +    K++K+AKE  QECVSE+ISFI SEAAE C   KRKTI  +DLL AM   GF+   EP+R+FL KYR+A+K+   I
Sbjct:   59 LLDQERFLPIANVVRIMKTQMDPQAKLAKDAKECAQECVSEFISFIASEAAEICNITKRKTITADDLLTAMEATGFDNYAEPMRIFLQKYRQAHKITGPI 158

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BLAST of nuclear factor Y complex B2 vs. Ensembl Celegans
Match: nfyb-1 (Nuclear transcription Factor Y, B (Beta) subunit [Source:UniProtKB/TrEMBL;Acc:A0A0M7RFF4])

HSP 1 Score: 97.4413 bits (241), Expect = 4.099e-23
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = 1

Query:  301 MKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSI 552
            MK  +    K++K+AKE  QECVSE+ISFI SEAAE C   KRKTI  +DLL AM   GF+   EP+R+FL KYR+A+K+   I
Sbjct:    1 MKTQMDPQAKLAKDAKECAQECVSEFISFIASEAAEICNITKRKTITADDLLTAMEATGFDNYAEPMRIFLQKYRQAHKITGPI 84

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BLAST of nuclear factor Y complex B2 vs. Ensembl Celegans
Match: dro-1 (DR1 (One) transcription factor family [Source:UniProtKB/TrEMBL;Acc:O45550])

HSP 1 Score: 48.9062 bits (115), Expect = 6.762e-7
Identity = 24/69 (34.78%), Postives = 42/69 (60.87%), Query Frame = 1

Query:  274 LPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGF 480
            LP   +++I+K+ VP   +I+ E+++++  C  E++  I  EA     Q++RKTI  E +  A+ NLGF
Sbjct:   22 LPQKGINQIIKEVVP-EMRIANESRDMINACCVEFVKHIAREAQRIASQDQRKTIYHEHVQKALQNLGF 89

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BLAST of nuclear factor Y complex B2 vs. Ensembl Fly
Match: Nf-YB (gene:FBgn0032816 transcript:FBtr0343854)

HSP 1 Score: 141.354 bits (355), Expect = 2.010e-41
Identity = 65/104 (62.50%), Postives = 83/104 (79.81%), Query Frame = 1

Query:  253 LREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSIMDDS 564
            LREQDRFLPI N+ KIMK  VP NGKI+K+A+E +QECVSE+ISFI+SEA E+   E RKT+NG+DLL A +NLGF+  VEPL ++L KYRE+NK D ++  D+
Sbjct:   36 LREQDRFLPICNIIKIMKVPVPQNGKIAKDARECIQECVSEFISFISSEAIERSVAENRKTVNGDDLLVAFSNLGFDNYVEPLSIYLQKYRESNKSDRNLFLDA 139

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BLAST of nuclear factor Y complex B2 vs. Ensembl Fly
Match: Nf-YB (gene:FBgn0032816 transcript:FBtr0081289)

HSP 1 Score: 141.354 bits (355), Expect = 2.010e-41
Identity = 65/104 (62.50%), Postives = 83/104 (79.81%), Query Frame = 1

Query:  253 LREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSIMDDS 564
            LREQDRFLPI N+ KIMK  VP NGKI+K+A+E +QECVSE+ISFI+SEA E+   E RKT+NG+DLL A +NLGF+  VEPL ++L KYRE+NK D ++  D+
Sbjct:   36 LREQDRFLPICNIIKIMKVPVPQNGKIAKDARECIQECVSEFISFISSEAIERSVAENRKTVNGDDLLVAFSNLGFDNYVEPLSIYLQKYRESNKSDRNLFLDA 139

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BLAST of nuclear factor Y complex B2 vs. Ensembl Fly
Match: NC2beta (gene:FBgn0028926 transcript:FBtr0080695)

HSP 1 Score: 68.5514 bits (166), Expect = 1.382e-13
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1

Query:  238 EQLSPLREQDRF-LPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGF 480
            E L P  E D   LP A+++KI+K+ VPT  +++ E++E++  C SE+I  I+SEA E C    +KTIN E +L A+  LGF
Sbjct:    7 ELLPPSAEDDELTLPRASINKIIKELVPT-VRVANESRELILNCCSEFIHLISSEANEVCNMRNKKTINAEHVLEALERLGF 87

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BLAST of nuclear factor Y complex B2 vs. Ensembl Fly
Match: Chrac-14 (gene:FBgn0043002 transcript:FBtr0100268)

HSP 1 Score: 50.0618 bits (118), Expect = 1.397e-7
Identity = 29/90 (32.22%), Postives = 48/90 (53.33%), Query Frame = 1

Query:  256 REQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYR 525
            R +D  LP A + +++K+A+P +  +SKEA+  +    S +  F+TS +     ++  KTI  +D+L  +  L FE  V  L   L  YR
Sbjct:    4 RIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPSLTQDLEVYR 93

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BLAST of nuclear factor Y complex B2 vs. Ensembl Zebrafish
Match: nfybb (nuclear transcription factor Y, beta b [Source:ZFIN;Acc:ZDB-GENE-050306-25])

HSP 1 Score: 152.525 bits (384), Expect = 4.507e-45
Identity = 69/100 (69.00%), Postives = 86/100 (86.00%), Query Frame = 1

Query:  253 LREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSI 552
            LREQD +LPIANV++IMK A+P  GKI+K+AKE VQECVSE+ISFITSEA+E+C QEKRKTINGED+L+AM+ LGF+  VEPL+L+L K+REA K +  I
Sbjct:   51 LREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDMYVEPLKLYLQKFREAMKGEKGI 150

[Close]

BLAST of nuclear factor Y complex B2 vs. Ensembl Zebrafish
Match: nfyba (nuclear transcription factor Y, beta a [Source:ZFIN;Acc:ZDB-GENE-050417-13])

HSP 1 Score: 152.14 bits (383), Expect = 6.307e-45
Identity = 72/113 (63.72%), Postives = 91/113 (80.53%), Query Frame = 1

Query:  214 DGEYTQEFEQLSPLREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSI 552
            DG  +++F      REQD +LPIANV++IMK AVP  GKI+K+AKE VQECVSE+ISFITSEA+E+C QEKRKTINGED+L+AM+ LGF+  VEPL+L+L K+REA K +  I
Sbjct:   42 DGNGSKDF-----FREQDIYLPIANVARIMKNAVPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDMYVEPLKLYLQKFREAMKGEKGI 149

[Close]

Query:  214 DGEYTQEFEQLSPLREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSI 552
            DG  +++F      REQD +LPIANV++IMK AVP  GKI+K+AKE VQECVSE+ISFITSEA+E+C QEKRKTINGED+L+AM+ LGF+  VEPL+L+L K+REA K +  I
Sbjct:   42 DGNGSKDF-----FREQDIYLPIANVARIMKNAVPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDMYVEPLKLYLQKFREAMKGEKGI 149

[Close]

BLAST of nuclear factor Y complex B2 vs. Ensembl Zebrafish
Match: nfybb (nuclear transcription factor Y, beta b [Source:ZFIN;Acc:ZDB-GENE-050306-25])

HSP 1 Score: 152.91 bits (385), Expect = 7.420e-45
Identity = 69/100 (69.00%), Postives = 86/100 (86.00%), Query Frame = 1

Query:  253 LREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSI 552
            LREQD +LPIANV++IMK A+P  GKI+K+AKE VQECVSE+ISFITSEA+E+C QEKRKTINGED+L+AM+ LGF+  VEPL+L+L K+REA K +  I
Sbjct:   72 LREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDMYVEPLKLYLQKFREAMKGEKGI 171

[Close]

BLAST of nuclear factor Y complex B2 vs. Ensembl Zebrafish
Match: nfybb (nuclear transcription factor Y, beta b [Source:ZFIN;Acc:ZDB-GENE-050306-25])

HSP 1 Score: 152.14 bits (383), Expect = 1.611e-44
Identity = 69/100 (69.00%), Postives = 86/100 (86.00%), Query Frame = 1

Query:  253 LREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSI 552
            LREQD +LPIANV++IMK A+P  GKI+K+AKE VQECVSE+ISFITSEA+E+C QEKRKTINGED+L+AM+ LGF+  VEPL+L+L K+REA K +  I
Sbjct:   46 LREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDMYVEPLKLYLQKFREAMKGEKGI 145

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BLAST of nuclear factor Y complex B2 vs. Ensembl Xenopus
Match: cdk5r1 (cyclin-dependent kinase 5, regulatory subunit 1 (p35) [Source:Xenbase;Acc:XB-GENE-1032903])

HSP 1 Score: 150.214 bits (378), Expect = 6.360e-44
Identity = 68/100 (68.00%), Postives = 85/100 (85.00%), Query Frame = 1

Query:  253 LREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSI 552
             REQD +LPIANV++IMK A+P  GKI+K+AKE VQECVSE+ISFITSEA+E+C QEKRKTINGED+L+AM+ LGF+  VEPL+L+L K+REA K +  I
Sbjct:   51 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGI 150

[Close]

BLAST of nuclear factor Y complex B2 vs. Ensembl Xenopus
Match: cdk5r1 (cyclin-dependent kinase 5, regulatory subunit 1 (p35) [Source:Xenbase;Acc:XB-GENE-1032903])

HSP 1 Score: 149.828 bits (377), Expect = 4.692e-43
Identity = 68/100 (68.00%), Postives = 85/100 (85.00%), Query Frame = 1

Query:  253 LREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSI 552
             REQD +LPIANV++IMK A+P  GKI+K+AKE VQECVSE+ISFITSEA+E+C QEKRKTINGED+L+AM+ LGF+  VEPL+L+L K+REA K +  I
Sbjct:  113 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGI 212

[Close]

BLAST of nuclear factor Y complex B2 vs. Ensembl Xenopus
Match: pole3 (polymerase (DNA directed), epsilon 3, accessory subunit [Source:NCBI gene;Acc:550018])

HSP 1 Score: 62.3882 bits (150), Expect = 1.615e-11
Identity = 35/94 (37.23%), Postives = 55/94 (58.51%), Query Frame = 1

Query:  256 REQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANK 537
            R +D  LP A V++I+K+A+P    ISKEA+  +    S ++ + TS A     + KRKT+N  D+L AM  + F++ + PL+  L  YR+  K
Sbjct:    4 RPEDLNLPNAVVTRIIKEALPEGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNATDVLAAMEEMEFQRFLTPLKESLEVYRQDQK 97

[Close]

BLAST of nuclear factor Y complex B2 vs. Ensembl Xenopus
Match: rad17 (RAD17 checkpoint clamp loader component [Source:Xenbase;Acc:XB-GENE-1002356])

HSP 1 Score: 59.6918 bits (143), Expect = 2.755e-10
Identity = 27/72 (37.50%), Postives = 51/72 (70.83%), Query Frame = 1

Query:  265 DRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGF 480
            D  +P A ++K++K+ +P N +++ +A+E+V  C +E+I  I+SEA E C + ++KTI+ E ++ A+ +LGF
Sbjct:   10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGF 80

[Close]

BLAST of nuclear factor Y complex B2 vs. Ensembl Mouse
Match: Nfyb (nuclear transcription factor-Y beta [Source:MGI Symbol;Acc:MGI:97317])

HSP 1 Score: 152.525 bits (384), Expect = 7.041e-45
Identity = 68/100 (68.00%), Postives = 85/100 (85.00%), Query Frame = 1

Query:  253 LREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSI 552
             REQD +LPIANV++IMK A+P  GKI+K+AKE VQECVSE+ISFITSEA+E+C QEKRKTINGED+L+AM+ LGF+  VEPL+L+L K+REA K +  I
Sbjct:   52 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGI 151

[Close]

BLAST of nuclear factor Y complex B2 vs. Ensembl Mouse
Match: Nfyb (nuclear transcription factor-Y beta [Source:MGI Symbol;Acc:MGI:97317])

HSP 1 Score: 90.5077 bits (223), Expect = 2.116e-22
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 1

Query:  253 LREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQ 417
             REQD +LPIANV++IMK A+P  GKI+K+AKE VQECVSE+ISFITSEA+E+C 
Sbjct:   52 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCH 106

[Close]

BLAST of nuclear factor Y complex B2 vs. Ensembl Mouse
Match: Pole3 (polymerase (DNA directed), epsilon 3 (p17 subunit) [Source:MGI Symbol;Acc:MGI:1933378])

HSP 1 Score: 62.7734 bits (151), Expect = 9.062e-12
Identity = 34/94 (36.17%), Postives = 54/94 (57.45%), Query Frame = 1

Query:  256 REQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANK 537
            R +D  LP A +++I+K+A+P    ISKEA+  +    S ++ + TS A     + KRKT+N  D+L AM  + F++ + PL+  L  YR   K
Sbjct:    4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFITPLKEALEAYRREQK 97

[Close]

BLAST of nuclear factor Y complex B2 vs. Ensembl Mouse
Match: Dr1 (down-regulator of transcription 1 [Source:MGI Symbol;Acc:MGI:1100515])

HSP 1 Score: 59.3066 bits (142), Expect = 2.900e-10
Identity = 27/72 (37.50%), Postives = 51/72 (70.83%), Query Frame = 1

Query:  265 DRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGF 480
            D  +P A ++K++K+ +P N +++ +A+E+V  C +E+I  I+SEA E C + ++KTI+ E ++ A+ +LGF
Sbjct:   10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGF 80

[Close]

BLAST of nuclear factor Y complex B2 vs. UniProt/SwissProt
Match: sp|P25209|NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.230e-49
Identity = 76/109 (69.72%), Postives = 94/109 (86.24%), Query Frame = 1

Query:  253 LREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREA---NKLDSSIMDDSIE 570
            +REQDRFLPIAN+S+IMKKA+P NGKI+K+AKE VQECVSE+ISFITSEA++KCQ+EKRKTING+DLLWAMA LGFE  +EPL+++L KYRE    +KL +   D SI+
Sbjct:   29 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKSSDGSIK 137

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BLAST of nuclear factor Y complex B2 vs. UniProt/SwissProt
Match: sp|Q60EQ4|NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.481e-48
Identity = 75/109 (68.81%), Postives = 94/109 (86.24%), Query Frame = 1

Query:  253 LREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREA---NKLDSSIMDDSIE 570
            +REQDRFLPIAN+S+IMKKA+P NGKI+K+AKE VQECVSE+ISFITSEA++KCQ+EKRKTING+DLLWAMA LGFE  +EPL+++L KYRE    +KL +   D S++
Sbjct:   36 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKAGDGSVK 144

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BLAST of nuclear factor Y complex B2 vs. UniProt/SwissProt
Match: sp|Q5QMG3|NFYB2_ORYSJ (Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.858e-48
Identity = 74/109 (67.89%), Postives = 94/109 (86.24%), Query Frame = 1

Query:  253 LREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREA---NKLDSSIMDDSIE 570
            +REQDRFLPIAN+S+IMKKAVP NGKI+K+AKE +QECVSE+ISF+TSEA++KCQ+EKRKTINGEDLL+AM  LGFE+ V+PL+++L KYRE    +KL S   D S++
Sbjct:   32 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREVIGDSKLSSKAGDGSVK 140

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BLAST of nuclear factor Y complex B2 vs. UniProt/SwissProt
Match: sp|Q8VYK4|NFYB8_ARATH (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana OX=3702 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.827e-47
Identity = 68/92 (73.91%), Postives = 86/92 (93.48%), Query Frame = 1

Query:  253 LREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYRE 528
            +REQDRFLPIAN+S+IMK+ +P NGKI+K+AKEIVQECVSE+ISF+TSEA++KCQ+EKRKTING+DLLWAMA LGFE  +EPL+++L +YRE
Sbjct:   28 VREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYRE 119

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BLAST of nuclear factor Y complex B2 vs. UniProt/SwissProt
Match: sp|O23310|NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.048e-47
Identity = 71/91 (78.02%), Postives = 82/91 (90.11%), Query Frame = 1

Query:  256 REQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYRE 528
            REQDRFLPIANVS+IMKKA+P N KISK+AKE VQECVSE+ISFIT EA++KCQ+EKRKTING+DLLWAM  LGFE  VEPL+++L KYRE
Sbjct:   20 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYRE 110

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BLAST of nuclear factor Y complex B2 vs. TrEMBL
Match: A0A182BAE3 (Nuclear factor-Y subunit B2 OS=Schmidtea mediterranea OX=79327 GN=NF-YB2 PE=2 SV=1)

HSP 1 Score: 409.838 bits (1052), Expect = 1.245e-142
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 1

Query:  130 MDSNQENIVSDNNFDSYYENMDHQVQQGDGEYTQEFEQLSPLREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSIMDDSIEMGRHMDNNMGNVENTIYLRDNIEYVQSEAGHDSXXXXXXXXXXXDGSSSGNIYVTYPTXXXXXXXXXXXVDNSNL 795
            MDSNQENIVSDNNFDSYYENMDHQVQQGDGEYTQEFEQLSPLREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSIMDDSIEMGRHMDNNMGNVENTIYLRDNIEYVQSEAGHDSTTATGTITLSTDGSSSGNIYVTYPTNLNTINGCNNNVDNSNL
Sbjct:    1 MDSNQENIVSDNNFDSYYENMDHQVQQGDGEYTQEFEQLSPLREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSIMDDSIEMGRHMDNNMGNVENTIYLRDNIEYVQSEAGHDSTTATGTITLSTDGSSSGNIYVTYPTNLNTINGCNNNVDNSNL 222

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BLAST of nuclear factor Y complex B2 vs. TrEMBL
Match: A0A0F7GWX5 (Nuclear factor Y complex B2 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 2.682e-81
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1

Query:  154 VSDNNFDSYYENMDHQVQQGDGEYTQEFEQLSPLREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLF 510
            VSDNNFDSYYENMDHQVQQGDGEYTQEFEQLSPLREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLF
Sbjct:    1 VSDNNFDSYYENMDHQVQQGDGEYTQEFEQLSPLREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLF 119

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BLAST of nuclear factor Y complex B2 vs. TrEMBL
Match: A0A5K3EN84 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 7.672e-59
Identity = 99/183 (54.10%), Postives = 127/183 (69.40%), Query Frame = 1

Query:  136 SNQENIVSDNNFD-------SYYENMDHQVQQGDGEYTQ-EFEQLSPLREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSIMDDSIEMGRHMDNNMGNVENTIYLRDNIEYVQSEAG 660
            +++ N +SDN  D        YY  +D  +   D +Y+  + EQ SPLREQDRFLPIANVSKIMK+A+P NGK++K+AKE VQECVSE+ISFITSEAAE+CQ EKRKTINGEDLLWAM  LGFE  VEPL+ FL KYR+A K+DS+I++ S E+   +     +  NT+ +      + S A 
Sbjct:   37 ADKMNSLSDNQADESAYQDAGYYGTIDSSLTDADADYSATDMEQRSPLREQDRFLPIANVSKIMKRAIPPNGKVAKDAKECVQECVSEFISFITSEAAERCQNEKRKTINGEDLLWAMNALGFENYVEPLKTFLVKYRDAIKIDSTIINSSAELAATLQQQHPHHTNTVIVAAPPNLLNSPAA 219

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BLAST of nuclear factor Y complex B2 vs. TrEMBL
Match: A0A0R3W2E2 (CBFD_NFYB_HMF domain-containing protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS3977 PE=4 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 8.814e-59
Identity = 92/138 (66.67%), Postives = 112/138 (81.16%), Query Frame = 1

Query:  175 SYYENMDHQVQQGDGEYTQ-EFEQLSPLREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSIMDDSIEMGRHM 585
            SYY  +D  +   D +Y+  + EQ SPLREQDRFLPIANVSKIMK+A+P+NGK++K+AKE VQECVSE+ISFITSEAAE+CQ EKRKTINGEDLLWAM  LGFE  VEPL+ FL KYR+A K+DSSI++ S E+   +
Sbjct:   18 SYYGTIDSSLADTDADYSAADIEQRSPLREQDRFLPIANVSKIMKRAIPSNGKVAKDAKECVQECVSEFISFITSEAAERCQNEKRKTINGEDLLWAMNALGFENYVEPLKTFLVKYRDAIKIDSSIINSSAELAATL 155

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BLAST of nuclear factor Y complex B2 vs. TrEMBL
Match: A0A087W114 (Nuclear transcription factor Y subunit beta OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000204400 PE=4 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.663e-58
Identity = 91/137 (66.42%), Postives = 111/137 (81.02%), Query Frame = 1

Query:  178 YYENMDHQVQQGDGEYTQ-EFEQLSPLREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSIMDDSIEMGRHM 585
            YY  +D  +   D +Y+  + EQ SPLREQDRFLPIANVSKIMK+A+P+NGK++K+AKE VQECVSE+ISFITSEAAE+CQ EKRKTINGEDLLWAM  LGFE  VEPL+ FL KYR+A K+DSSI++ S E+   +
Sbjct:   19 YYGTIDSSLADTDADYSAADIEQRSPLREQDRFLPIANVSKIMKRAIPSNGKVAKDAKECVQECVSEFISFITSEAAERCQNEKRKTINGEDLLWAMNALGFENYVEPLKTFLVKYRDAIKIDSSIINSSAELAATL 155

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BLAST of nuclear factor Y complex B2 vs. Ensembl Cavefish
Match: nfyba (nuclear transcription factor Y subunit beta [Source:NCBI gene;Acc:103021655])

HSP 1 Score: 152.14 bits (383), Expect = 5.762e-45
Identity = 68/95 (71.58%), Postives = 84/95 (88.42%), Query Frame = 1

Query:  253 LREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANK 537
            LREQD +LPIANV++IMK A+P  GKI+K+AKE VQECVSE+ISFITSEA+E+C QEKRKTINGED+L+AM+ LGF+  VEPL+L+L K+REA K
Sbjct:   51 LREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDMYVEPLKLYLQKFREAMK 145

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BLAST of nuclear factor Y complex B2 vs. Ensembl Cavefish
Match: pole3 (DNA polymerase epsilon 3, accessory subunit [Source:NCBI gene;Acc:103024896])

HSP 1 Score: 63.929 bits (154), Expect = 2.982e-12
Identity = 33/94 (35.11%), Postives = 56/94 (59.57%), Query Frame = 1

Query:  256 REQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANK 537
            R +D  LP A +++I+K+A+P    +SKEA+  + +  S ++ + TS A     + KRKT+N  D++ AM  + FE+ + PLR  L  Y++  K
Sbjct:    4 RPEDLNLPNAVITRIIKEALPDGVNVSKEARRAISQAASVFVLYATSCANSFAMKAKRKTLNAGDVMSAMEEMEFERFLPPLRDALEAYKKGQK 97

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BLAST of nuclear factor Y complex B2 vs. Ensembl Cavefish
Match: dr1 (down-regulator of transcription 1 [Source:ZFIN;Acc:ZDB-GENE-061013-797])

HSP 1 Score: 58.9214 bits (141), Expect = 2.996e-10
Identity = 27/72 (37.50%), Postives = 51/72 (70.83%), Query Frame = 1

Query:  265 DRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGF 480
            D  +P A ++K++K+ +P N +++ +A+E+V  C +E+I  I+SEA E C + ++KTI+ E ++ A+ +LGF
Sbjct:   10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVINALESLGF 80

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BLAST of nuclear factor Y complex B2 vs. Ensembl Sea Lamprey
Match: nfybb (Nuclear transcription factor Y subunit beta [Source:UniProtKB/Swiss-Prot;Acc:P25210])

HSP 1 Score: 152.14 bits (383), Expect = 1.254e-45
Identity = 74/144 (51.39%), Postives = 102/144 (70.83%), Query Frame = 1

Query:  133 DSNQENIVSDNNFDSYY----ENMDHQVQQGDGEYTQEFEQLSPLREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSI 552
            D++Q  I  D     +Y     + D +     G++ +      P REQD +LPIANV++IMK ++P++GKI+K+AKE VQECVSE+ISFITSEA+E+C QEKRKTINGED+L+AM+ LGF+  VEPL+ +L KYRE+ K +  I
Sbjct:    9 DASQLGITGDYIGGGHYVLQSSDGDAEGSLASGDHDESCGSKDPYREQDIYLPIANVARIMKTSIPSSGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKQYLQKYRESMKGEKGI 152

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BLAST of nuclear factor Y complex B2 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000005397.1 (pep scaffold:Pmarinus_7.0:GL480146:24969:27649:-1 gene:ENSPMAG00000004898.1 transcript:ENSPMAT00000005397.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 58.151 bits (139), Expect = 1.322e-10
Identity = 26/72 (36.11%), Postives = 51/72 (70.83%), Query Frame = 1

Query:  265 DRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGF 480
            D  +P A ++K++K+ +P N +++ +A+E+V  C +E+I  I+SEA + C + ++KTI+ E ++ A+ +LGF
Sbjct:   10 DLTIPRAAINKLIKELLP-NVRVANDARELVVSCCTEFIHLISSEANDICNKSEKKTISPEHVIKALESLGF 80

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BLAST of nuclear factor Y complex B2 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000236.1 (pep scaffold:Pmarinus_7.0:GL476858:192568:199959:1 gene:ENSPMAG00000000215.1 transcript:ENSPMAT00000000236.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 47.3654 bits (111), Expect = 3.456e-7
Identity = 25/86 (29.07%), Postives = 50/86 (58.14%), Query Frame = 1

Query:  250 PLREQDRF-LPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLR 504
            P  E D+  LP A+V +++ + VP   +++  A+++++   + ++  ++SEA   C   +RKTI+ E ++ A+  LG   S+  LR
Sbjct:   16 PAHEADQVTLPYASVQRLVGELVPCL-RLTAGARDLLRMACTRFVRHVSSEANTACAHAQRKTISPEHVIQALERLGLAGSMGELR 100

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BLAST of nuclear factor Y complex B2 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002618.1 (pep scaffold:Pmarinus_7.0:GL480211:72207:74463:-1 gene:ENSPMAG00000002388.1 transcript:ENSPMAT00000002618.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 47.3654 bits (111), Expect = 5.135e-7
Identity = 25/86 (29.07%), Postives = 50/86 (58.14%), Query Frame = 1

Query:  250 PLREQDRF-LPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLR 504
            P  E D+  LP A+V +++ + VP   +++  A+++++   + ++  ++SEA   C   +RKTI+ E ++ A+  LG   S+  LR
Sbjct:   10 PAHEADQVTLPYASVQRLVGELVPCL-RLTAGARDLLRVACTRFVRHVSSEANTACAHAQRKTISPEHVIQALERLGLAGSMGELR 94

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BLAST of nuclear factor Y complex B2 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010174.1 (pep scaffold:Pmarinus_7.0:GL481450:33143:34437:1 gene:ENSPMAG00000009205.1 transcript:ENSPMAT00000010174.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 46.595 bits (109), Expect = 6.439e-7
Identity = 29/105 (27.62%), Postives = 56/105 (53.33%), Query Frame = 1

Query:  250 PLREQDRF-LPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLR--------LFLTKYREANK 537
            P  E D+  LP A+V +++ + VP   +++  A+++++     ++  ++SEA   C   +RKTI+ E ++ A+  LG   S+  LR        L L++ R A +
Sbjct:   16 PAHEADQVTLPYASVQRLVGELVPCL-RLTAGARDLLRVACKRFVRHVSSEANTACAHVQRKTISPEHVIQALERLGLAGSMGELRACHAEFCALALSRRRRATR 119

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BLAST of nuclear factor Y complex B2 vs. Ensembl Yeast
Match: HAP3 (Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex; complex is heme-activated and glucose-repressed; complex is a transcriptional activator and global regulator of respiratory gene expression; contains sequences contributing to both complex assembly and DNA binding [Source:SGD;Acc:S000000117])

HSP 1 Score: 134.42 bits (337), Expect = 1.103e-39
Identity = 61/121 (50.41%), Postives = 88/121 (72.73%), Query Frame = 1

Query:  193 DHQVQQGDGEYTQEFEQLSPLREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSIM 555
            D Q   G+   +   +Q+S LREQDR+LPI NV+++MK  +P + K+SK+AKE +QECVSE ISF+TSEA+++C  +KRKTINGED+L ++  LGFE   E L+++L KYR+   L + +M
Sbjct:   15 DTQENGGNASSSGSLQQISTLREQDRWLPINNVARLMKNTLPPSAKVSKDAKECMQECVSELISFVTSEASDRCAADKRKTINGEDILISLHALGFENYAEVLKIYLAKYRQQQALKNQLM 135

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BLAST of nuclear factor Y complex B2 vs. Ensembl Nematostella
Match: EDO46868 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RNJ1])

HSP 1 Score: 147.517 bits (371), Expect = 8.026e-45
Identity = 66/90 (73.33%), Postives = 80/90 (88.89%), Query Frame = 1

Query:  262 QDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREA 531
            QDRFLPIANV++IMKK++P  GKI+K+AKE VQECVSE+ISFITSEA+E+C QEKRKTINGED+L+AM  LGF+  VEPL+L+L KYRE 
Sbjct:    4 QDRFLPIANVARIMKKSIPKTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMQTLGFDNYVEPLKLYLQKYREV 93

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BLAST of nuclear factor Y complex B2 vs. Ensembl Nematostella
Match: EDO43839 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RXF9])

HSP 1 Score: 67.781 bits (164), Expect = 1.995e-13
Identity = 36/101 (35.64%), Postives = 65/101 (64.36%), Query Frame = 1

Query:  253 LREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFL--TKYREANKLDSS 549
            L + D  LP A V+K++K+ +P N ++S +A+E++  C +E+I  I+SEA + C ++ +KTI+ + +L A+  LGF+  +E ++  L   K + ANK  +S
Sbjct:    7 LADDDVTLPRAAVNKMIKEMIP-NMRVSNDARELILNCCTEFIHLISSEANDVCNRQMKKTISPDHILLALEGLGFQHYIEDVKSVLAECKTQAANKRRAS 106

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BLAST of nuclear factor Y complex B2 vs. Ensembl Nematostella
Match: EDO37307 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SG28])

HSP 1 Score: 49.6766 bits (117), Expect = 1.151e-7
Identity = 29/94 (30.85%), Postives = 53/94 (56.38%), Query Frame = 1

Query:  256 REQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANK 537
            + +D  LP A V +++K+A+P    ISKEA+  + +  S ++ + TS A       KRKT+   D++ A+ ++ FEQ +  L+  L  +++  K
Sbjct:    4 KPEDLNLPNAVVVRLVKEALPDGVSISKEARSAIGKAASVFVLYATSCANNFALSHKRKTLQATDVISALEDMEFEQFIPQLKQDLNAFQKEQK 97

[Close]

BLAST of nuclear factor Y complex B2 vs. Ensembl Medaka
Match: nfyba (nuclear transcription factor Y subunit beta [Source:NCBI gene;Acc:101165365])

HSP 1 Score: 150.599 bits (379), Expect = 2.397e-44
Identity = 70/107 (65.42%), Postives = 88/107 (82.24%), Query Frame = 1

Query:  256 REQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSIMDDSIEMG 576
            REQD +LPIANV++IMK AVP  GKI+K+AKE VQECVSE+ISFITSEA+E+C QEKRKTINGED+L+AM+ LGF+  V+PL+L+L K+REA K +  I   S+  G
Sbjct:   51 REQDIYLPIANVARIMKNAVPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDMYVDPLKLYLQKFREAMKGEKGIAGVSVGEG 157

[Close]

BLAST of nuclear factor Y complex B2 vs. Ensembl Medaka
Match: nfyba (nuclear transcription factor Y subunit beta [Source:NCBI gene;Acc:101165365])

HSP 1 Score: 149.828 bits (377), Expect = 2.777e-43
Identity = 70/107 (65.42%), Postives = 88/107 (82.24%), Query Frame = 1

Query:  256 REQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSIMDDSIEMG 576
            REQD +LPIANV++IMK AVP  GKI+K+AKE VQECVSE+ISFITSEA+E+C QEKRKTINGED+L+AM+ LGF+  V+PL+L+L K+REA K +  I   S+  G
Sbjct:   51 REQDIYLPIANVARIMKNAVPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDMYVDPLKLYLQKFREAMKGEKGIAGVSVGEG 157

[Close]

BLAST of nuclear factor Y complex B2 vs. Ensembl Medaka
Match: ENSORLT00000000708.2 (DNA polymerase epsilon 3, accessory subunit [Source:NCBI gene;Acc:101172142])

HSP 1 Score: 65.0846 bits (157), Expect = 1.071e-12
Identity = 34/94 (36.17%), Postives = 57/94 (60.64%), Query Frame = 1

Query:  256 REQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANK 537
            + +D  LP A +++I+K+A+P    +SKEA+  + +  S ++ + TS A     + KRKT+N  D+L AM  + FE+ +EPLR  L  Y++  K
Sbjct:    4 KPEDLNLPNAVITRIIKEALPDGVNVSKEARRAISQAASVFVLYATSCANNFALKAKRKTLNAADVLAAMEEMEFERFLEPLRAALEVYKKGQK 97

[Close]

BLAST of nuclear factor Y complex B2 vs. Ensembl Medaka
Match: dr1 (down-regulator of transcription 1 [Source:NCBI gene;Acc:101168111])

HSP 1 Score: 53.1434 bits (126), Expect = 3.324e-8
Identity = 26/72 (36.11%), Postives = 49/72 (68.06%), Query Frame = 1

Query:  265 DRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGF 480
            D  +P A ++K++K+ +P N +++ +A+E+V  C +E+I  I+SEA E C +  +KTI+ E ++  + +LGF
Sbjct:   10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSDKKTISPEHVI-NLESLGF 79

[Close]

BLAST of nuclear factor Y complex B2 vs. Planmine SMEST
Match: SMESG000040141.1 (SMESG000040141.1)

HSP 1 Score: 409.838 bits (1052), Expect = 3.463e-146
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 1

Query:  130 MDSNQENIVSDNNFDSYYENMDHQVQQGDGEYTQEFEQLSPLREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSIMDDSIEMGRHMDNNMGNVENTIYLRDNIEYVQSEAGHDSXXXXXXXXXXXDGSSSGNIYVTYPTXXXXXXXXXXXVDNSNL 795
            MDSNQENIVSDNNFDSYYENMDHQVQQGDGEYTQEFEQLSPLREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSIMDDSIEMGRHMDNNMGNVENTIYLRDNIEYVQSEAGHDSTTATGTITLSTDGSSSGNIYVTYPTNLNTINGCNNNVDNSNL
Sbjct:    1 MDSNQENIVSDNNFDSYYENMDHQVQQGDGEYTQEFEQLSPLREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSIMDDSIEMGRHMDNNMGNVENTIYLRDNIEYVQSEAGHDSTTATGTITLSTDGSSSGNIYVTYPTNLNTINGCNNNVDNSNL 222

[Close]

BLAST of nuclear factor Y complex B2 vs. Planmine SMEST
Match: SMESG000017262.1 (SMESG000017262.1)

HSP 1 Score: 144.436 bits (363), Expect = 4.634e-42
Identity = 67/102 (65.69%), Postives = 84/102 (82.35%), Query Frame = 1

Query:  253 LREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSIMD 558
            L++QDRFLPI NVSKIMKK +P + KI+K+AK+ VQEC SE+ISF++SEAAE CQ +KRKTINGED+L A ANLGF+  VE L+ FL  YREANK ++ I+D
Sbjct:   28 LKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDIID 129

[Close]

BLAST of nuclear factor Y complex B2 vs. Planmine SMEST
Match: SMESG000017262.1 (SMESG000017262.1)

HSP 1 Score: 144.436 bits (363), Expect = 5.015e-42
Identity = 67/102 (65.69%), Postives = 84/102 (82.35%), Query Frame = 1

Query:  253 LREQDRFLPIANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKRKTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSIMD 558
            L++QDRFLPI NVSKIMKK +P + KI+K+AK+ VQEC SE+ISF++SEAAE CQ +KRKTINGED+L A ANLGF+  VE L+ FL  YREANK ++ I+D
Sbjct:   24 LKDQDRFLPICNVSKIMKKDLPFSAKIAKDAKQCVQECASEFISFVSSEAAEICQNDKRKTINGEDILQAFANLGFDNYVETLQNFLQTYREANKFENDIID 125

The following BLAST results are available for this feature:

BLAST of nuclear factor Y complex B2 vs. Ensembl Human
BLAST of nuclear factor Y complex B2 vs. Ensembl Celegans
BLAST of nuclear factor Y complex B2 vs. Ensembl Fly
BLAST of nuclear factor Y complex B2 vs. Ensembl Zebrafish
BLAST of nuclear factor Y complex B2 vs. Ensembl Xenopus
BLAST of nuclear factor Y complex B2 vs. Ensembl Mouse
BLAST of nuclear factor Y complex B2 vs. UniProt/SwissProt
BLAST of nuclear factor Y complex B2 vs. TrEMBL
BLAST of nuclear factor Y complex B2 vs. Ensembl Cavefish
BLAST of nuclear factor Y complex B2 vs. Ensembl Sea Lamprey
BLAST of nuclear factor Y complex B2 vs. Ensembl Yeast
BLAST of nuclear factor Y complex B2 vs. Ensembl Nematostella
BLAST of nuclear factor Y complex B2 vs. Ensembl Medaka
BLAST of nuclear factor Y complex B2 vs. Planmine SMEST

BLAST of nuclear factor Y complex B2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
NFYB	9.212e-45	68.00	nuclear transcription factor Y subunit beta [Sourc...	[more]
NFYB	9.212e-45	68.00	nuclear transcription factor Y subunit beta [Sourc...	[more]
NFYB	1.126e-44	68.00	nuclear transcription factor Y subunit beta [Sourc...	[more]
POLE3	8.213e-12	37.23	DNA polymerase epsilon 3, accessory subunit [Sourc...	[more]
POLE3	8.213e-12	37.23	DNA polymerase epsilon 3, accessory subunit [Sourc...	[more]

BLAST of nuclear factor Y complex B2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3


Match Name	E-value	Identity	Description
nfyb-1	3.361e-31	57.00	Nuclear transcription Factor Y, B (Beta) subunit ...	[more]
nfyb-1	4.099e-23	54.76	Nuclear transcription Factor Y, B (Beta) subunit ...	[more]
dro-1	6.762e-7	34.78	DR1 (One) transcription factor family [Source:Uni...	[more]

BLAST of nuclear factor Y complex B2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 4


Match Name	E-value	Identity	Description
Nf-YB	2.010e-41	62.50	gene:FBgn0032816 transcript:FBtr0343854	[more]
Nf-YB	2.010e-41	62.50	gene:FBgn0032816 transcript:FBtr0081289	[more]
NC2beta	1.382e-13	43.90	gene:FBgn0028926 transcript:FBtr0080695	[more]
Chrac-14	1.397e-7	32.22	gene:FBgn0043002 transcript:FBtr0100268	[more]

BLAST of nuclear factor Y complex B2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
nfybb	4.507e-45	69.00	nuclear transcription factor Y, beta b [Source:ZFI...	[more]
nfyba	6.307e-45	63.72	nuclear transcription factor Y, beta a [Source:ZFI...	[more]
nfyba	6.307e-45	63.72	nuclear transcription factor Y, beta a [Source:ZFI...	[more]
nfybb	7.420e-45	69.00	nuclear transcription factor Y, beta b [Source:ZFI...	[more]
nfybb	1.611e-44	69.00	nuclear transcription factor Y, beta b [Source:ZFI...	[more]

BLAST of nuclear factor Y complex B2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 4


Match Name	E-value	Identity	Description
cdk5r1	6.360e-44	68.00	cyclin-dependent kinase 5, regulatory subunit 1 (p...	[more]
cdk5r1	4.692e-43	68.00	cyclin-dependent kinase 5, regulatory subunit 1 (p...	[more]
pole3	1.615e-11	37.23	polymerase (DNA directed), epsilon 3, accessory su...	[more]
rad17	2.755e-10	37.50	RAD17 checkpoint clamp loader component [Source:Xe...	[more]

BLAST of nuclear factor Y complex B2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4


Match Name	E-value	Identity	Description
Nfyb	7.041e-45	68.00	nuclear transcription factor-Y beta [Source:MGI Sy...	[more]
Nfyb	2.116e-22	70.91	nuclear transcription factor-Y beta [Source:MGI Sy...	[more]
Pole3	9.062e-12	36.17	polymerase (DNA directed), epsilon 3 (p17 subunit)...	[more]
Dr1	2.900e-10	37.50	down-regulator of transcription 1 [Source:MGI Symb...	[more]

BLAST of nuclear factor Y complex B2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P25209\|NFYB_MAIZE	4.230e-49	69.72	Nuclear transcription factor Y subunit B OS=Zea ma...	[more]
sp\|Q60EQ4\|NFYB3_ORYSJ	1.481e-48	68.81	Nuclear transcription factor Y subunit B-3 OS=Oryz...	[more]
sp\|Q5QMG3\|NFYB2_ORYSJ	4.858e-48	67.89	Nuclear transcription factor Y subunit B-2 OS=Oryz...	[more]
sp\|Q8VYK4\|NFYB8_ARATH	1.827e-47	73.91	Nuclear transcription factor Y subunit B-8 OS=Arab...	[more]
sp\|O23310\|NFYB3_ARATH	4.048e-47	78.02	Nuclear transcription factor Y subunit B-3 OS=Arab...	[more]

BLAST of nuclear factor Y complex B2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A182BAE3	1.245e-142	100.00	Nuclear factor-Y subunit B2 OS=Schmidtea mediterra...	[more]
A0A0F7GWX5	2.682e-81	100.00	Nuclear factor Y complex B2 (Fragment) OS=Schmidte...	[more]
A0A5K3EN84	7.672e-59	54.10	Uncharacterized protein OS=Mesocestoides corti OX=...	[more]
A0A0R3W2E2	8.814e-59	66.67	CBFD_NFYB_HMF domain-containing protein OS=Taenia ...	[more]
A0A087W114	1.663e-58	66.42	Nuclear transcription factor Y subunit beta OS=Ech...	[more]

BLAST of nuclear factor Y complex B2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3


Match Name	E-value	Identity	Description
nfyba	5.762e-45	71.58	nuclear transcription factor Y subunit beta [Sourc...	[more]
pole3	2.982e-12	35.11	DNA polymerase epsilon 3, accessory subunit [Sourc...	[more]
dr1	2.996e-10	37.50	down-regulator of transcription 1 [Source:ZFIN;Acc...	[more]

BLAST of nuclear factor Y complex B2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5


Match Name	E-value	Identity	Description
nfybb	1.254e-45	51.39	Nuclear transcription factor Y subunit beta [Sour...	[more]
ENSPMAT00000005397.1	1.322e-10	36.11	pep scaffold:Pmarinus_7.0:GL480146:24969:27649:-1 ...	[more]
ENSPMAT00000000236.1	3.456e-7	29.07	pep scaffold:Pmarinus_7.0:GL476858:192568:199959:1...	[more]
ENSPMAT00000002618.1	5.135e-7	29.07	pep scaffold:Pmarinus_7.0:GL480211:72207:74463:-1 ...	[more]
ENSPMAT00000010174.1	6.439e-7	27.62	pep scaffold:Pmarinus_7.0:GL481450:33143:34437:1 g...	[more]

BLAST of nuclear factor Y complex B2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
HAP3	1.103e-39	50.41	Subunit of the Hap2p/3p/4p/5p CCAAT-binding comple...	[more]

BLAST of nuclear factor Y complex B2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 3


Match Name	E-value	Identity	Description
EDO46868	8.026e-45	73.33	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO43839	1.995e-13	35.64	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO37307	1.151e-7	30.85	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of nuclear factor Y complex B2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4


Match Name	E-value	Identity	Description
nfyba	2.397e-44	65.42	nuclear transcription factor Y subunit beta [Sourc...	[more]
nfyba	2.777e-43	65.42	nuclear transcription factor Y subunit beta [Sourc...	[more]
ENSORLT00000000708.2	1.071e-12	36.17	DNA polymerase epsilon 3, accessory subunit [Sourc...	[more]
dr1	3.324e-8	36.11	down-regulator of transcription 1 [Source:NCBI gen...	[more]

BLAST of nuclear factor Y complex B2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3


Match Name	E-value	Identity	Description
SMESG000040141.1	3.463e-146	100.00	SMESG000040141.1	[more]
SMESG000017262.1	4.634e-42	65.69	SMESG000017262.1	[more]
SMESG000017262.1	5.015e-42	65.69	SMESG000017262.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Cross References

External references for this transcript


Database	Accession
SmedGD GBrowse	SMED30017282
GenBank	AKG62117.1

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30017282 ID=SMED30017282|Name=nuclear factor Y complex B2|organism=Schmidtea mediterranea sexual|type=transcript|length=897bp
CATGAATTGAAATCATTGCACAATGTTTTGAATCACTAAATTTGTTTAAA
TATTTTGTTTTAACCAATCAAATCTATTTGAAGAAAATAATAATTTTTCT
AGATTTATATAAATAATAAATTTTAATAAATGGATTCTAATCAAGAAAAT
ATTGTAAGCGATAATAATTTTGACAGTTACTATGAAAATATGGACCACCA
AGTCCAGCAAGGTGATGGCGAATATACTCAAGAATTTGAGCAACTTTCGC
CACTTCGTGAACAAGATAGATTTTTGCCTATTGCAAATGTATCCAAAATA
ATGAAAAAAGCAGTACCAACCAATGGAAAAATATCGAAAGAAGCAAAAGA
AATAGTACAAGAATGTGTTAGCGAATATATTAGCTTCATTACTAGCGAAG
CCGCTGAAAAATGTCAGCAAGAAAAACGGAAGACGATAAATGGGGAAGAC
CTGTTATGGGCCATGGCAAATTTAGGATTTGAACAGAGTGTAGAACCACT
TAGATTGTTTTTAACTAAGTATCGTGAGGCTAATAAATTGGATTCATCGA
TTATGGACGACAGCATTGAAATGGGAAGACACATGGACAACAATATGGGA
AATGTTGAAAATACAATTTATCTGAGGGATAATATTGAGTATGTTCAGAG
TGAAGCCGGTCACGACAGTACAACAGCAACAGGAACAATTACTCTTAGTA
CCGACGGTTCATCATCAGGCAACATTTATGTAACTTATCCCACCAATCTA
AACACAATCAATGGATGCAATAACAATGTCGACAATTCCAACCTGTGAAC
GGGACATTTCCTCATCAACCGACTCATGTCAATATTTAATTATAATTATT
GAAATATTCATAAAAATGTAATGTACAGTTTCAATTGAATAAAGTCG

protein sequence of SMED30017282-orf-1

>SMED30017282-orf-1 ID=SMED30017282-orf-1|Name=SMED30017282-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=223bp
MDSNQENIVSDNNFDSYYENMDHQVQQGDGEYTQEFEQLSPLREQDRFLP
IANVSKIMKKAVPTNGKISKEAKEIVQECVSEYISFITSEAAEKCQQEKR
KTINGEDLLWAMANLGFEQSVEPLRLFLTKYREANKLDSSIMDDSIEMGR
HMDNNMGNVENTIYLRDNIEYVQSEAGHDSTTATGTITLSTDGSSSGNIY
VTYPTNLNTINGCNNNVDNSNL*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000016	pharynx
PLANA:0000034	epidermis
PLANA:0000418	head
PLANA:0002109	X1 cell
PLANA:0002111	X2 cell
PLANA:0004527	copulatory region

Vocabulary: **INTERPRO**
Term	Definition
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

Vocabulary: **molecular function**
Term	Definition
GO:0046982	protein heterodimerization activity

Vocabulary: **cellular component**
Term	Definition
GO:0005634	nucleus

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 95..113 score: 43.78 coord: 114..132 score: 35.89 coord: 76..94 score: 51.2
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 25..177
None	No IPR available	PANTHER	PTHR11064:SF98		coord: 25..177
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 40..162 e-value: 1.4E-40 score: 140.3
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 45..161
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 48..112 e-value: 2.9E-28 score: 97.9