SMED30017216

Overview
NameSMED30017216
Smed IDSMED30017216
Length (bp)1238
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30017216 (SMED30017216) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30017216 (SMED30017216) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30017216 (SMED30017216) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30017216 (SMED30017216) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30017216

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parenchymal cellSMED30017216 dd_Smed_v4_5464_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
zeta neoblastSMED30017216 dd_Smed_v4_5464_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SMED30017216 vs. TrEMBL
Match: A0A095BUK2 (Protein numb OS=Schistosoma haematobium OX=6185 GN=MS3_00720 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.064e-8
Identity = 60/232 (25.86%), Postives = 102/232 (43.97%), Query Frame = 3
Query:  135 DEKMIIENKCQFDVQYLGSVHIETPNDYVKCCEXXXXXXXXXXXXXXXXXXSTFSLILSEKLTTDIKIDQTLRDIAICASHPLIPYAFFYTFRDQEFHSFKLCGFISMREVSDRIINALLIALKFYAEKQNESLHN---LSNYQKLEQIEHDKAFKQISLRERFQDPQSSIVI-------------SNSKISCSKTCSDLKSIPRPKPG-----KKNSFDLFPILNQNNLFK 767
            DE  I E  C F V+YLG++ +        C E +K L   KK  K +L +S  +L +S+ ++  + +DQT+  ++ CA        F Y  RD     +    F++++E  +R+ +A+  A     EK+     +   L             +F+  +L ER  DPQS+IV+               +    S   + + +IPRP        ++ S  +FP L +N+ FK
Sbjct:   33 DEVKIKEGFCSFQVKYLGNIEVYESRGMQVCEEAIKALRKSKKPQKAVLSVSGDALRVSDDVSQHLIVDQTIEKVSFCAPDRNHEKGFAYICRDGATRRWMCHAFLAVKESGERLSHAVGCAFAICLEKKQRRERDALQLEASDDRPTFARVGSFRPATLAERLLDPQSTIVVDPVPKPNNISSTLPTTITRVSSPVNHIGAIPRPHASPSIIERQGSLRIFPKLQENSPFK 264          
BLAST of SMED30017216 vs. TrEMBL
Match: A0A430QHQ1 (Numb OS=Schistosoma bovis OX=6184 GN=DC041_0005017 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.235e-8
Identity = 60/232 (25.86%), Postives = 102/232 (43.97%), Query Frame = 3
Query:  135 DEKMIIENKCQFDVQYLGSVHIETPNDYVKCCEXXXXXXXXXXXXXXXXXXSTFSLILSEKLTTDIKIDQTLRDIAICASHPLIPYAFFYTFRDQEFHSFKLCGFISMREVSDRIINALLIALKFYAEKQNESLHN---LSNYQKLEQIEHDKAFKQISLRERFQDPQSSIVI-------------SNSKISCSKTCSDLKSIPRPKPG-----KKNSFDLFPILNQNNLFK 767
            DE  I E  C F V+YLG++ +        C E +K L   KK  K +L +S  +L +S+ ++  + +DQT+  ++ CA        F Y  RD     +    F++++E  +R+ +A+  A     EK+     +   L             +F+  +L ER  DPQS+IV+               +    S   + + +IPRP        ++ S  +FP L +N+ FK
Sbjct:   33 DEVKIKEGFCSFQVKYLGNIEVYESRGMQVCEEAIKALRKSKKPQKAVLSVSGDALRVSDDVSQHLIVDQTIEKVSFCAPDRNHEKGFAYICRDGATRRWMCHAFLAVKESGERLSHAVGCAFAICLEKKQRRERDALQLEASDDRPTFARVGSFRPATLAERLLDPQSTIVVDPVPKPNNISSTLPTTITRVSSPVNHIGAIPRPHASPSIIERQGSLRIFPKLQENSPFK 264          
BLAST of SMED30017216 vs. TrEMBL
Match: A0A183KB88 (PID domain-containing protein OS=Schistosoma curassoni OX=6186 GN=SCUD_LOCUS12276 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.337e-8
Identity = 60/232 (25.86%), Postives = 102/232 (43.97%), Query Frame = 3
Query:  135 DEKMIIENKCQFDVQYLGSVHIETPNDYVKCCEXXXXXXXXXXXXXXXXXXSTFSLILSEKLTTDIKIDQTLRDIAICASHPLIPYAFFYTFRDQEFHSFKLCGFISMREVSDRIINALLIALKFYAEKQNESLHN---LSNYQKLEQIEHDKAFKQISLRERFQDPQSSIVI-------------SNSKISCSKTCSDLKSIPRPKPG-----KKNSFDLFPILNQNNLFK 767
            DE  I E  C F V+YLG++ +        C E +K L   KK  K +L +S  +L +S+ ++  + +DQT+  ++ CA        F Y  RD     +    F++++E  +R+ +A+  A     EK+     +   L             +F+  +L ER  DPQS+IV+               +    S   + + +IPRP        ++ S  +FP L +N+ FK
Sbjct:   33 DEVKIKEGFCSFQVKYLGNIEVYESRGMQVCEEAIKALRKSKKPQKAVLSVSGDALRVSDDVSQHLIVDQTIEKVSFCAPDRNHEKGFAYICRDGATRRWMCHAFLAVKESGERLSHAVGCAFAICLEKKQRRERDALQLEASDDRPTFARVGSFRPATLAERLLDPQSTIVVDPVPKPNNISSTLPTTITRVSSPVNHIGAIPRPHASPSIIERQGSLRIFPKLQENSPFK 264          
BLAST of SMED30017216 vs. TrEMBL
Match: A0A3Q0KF97 (Cell polarity protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.135e-8
Identity = 60/232 (25.86%), Postives = 102/232 (43.97%), Query Frame = 3
Query:  135 DEKMIIENKCQFDVQYLGSVHIETPNDYVKCCEXXXXXXXXXXXXXXXXXXSTFSLILSEKLTTDIKIDQTLRDIAICASHPLIPYAFFYTFRDQEFHSFKLCGFISMREVSDRIINALLIALKFYAEKQNESLHN---LSNYQKLEQIEHDKAFKQISLRERFQDPQSSIVI-------------SNSKISCSKTCSDLKSIPRPKPG-----KKNSFDLFPILNQNNLFK 767
            DE  I E  C F V+YLG++ +        C E +K L   KK  K +L +S  +L +S+ ++  + +DQT+  ++ CA        F Y  RD     +    F++++E  +R+ +A+  A     EK+     +   L             +F+  +L ER  DPQS+IV+               +    S   + + +IPRP        ++ S  +FP L +N+ FK
Sbjct:   33 DEVKIKEGFCSFQVKYLGNIEVYESRGMQVCEEAIKALRKSKKPQKAVLSVSGDALRVSDDVSQHLIVDQTIEKVSFCAPDRNHEKGFAYICRDGATRRWMCHAFLAVKESGERLSHAVGCAFAICLEKKQRRERDALQLEASDDRPTFARVGSFRPATLAERLLDPQSTIVVDPVPKSNNTSSTSPTTITRVSSPVNHIGAIPRPHASPSIIERQGSLRIFPKLQENSPFK 264          
BLAST of SMED30017216 vs. TrEMBL
Match: T1FXM1 (PID domain-containing protein OS=Helobdella robusta OX=6412 GN=20213569 PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 4.462e-8
Identity = 43/184 (23.37%), Postives = 87/184 (47.28%), Query Frame = 3
Query:  135 DEKMIIENKCQFDVQYLGSVHIETPNDYVKCCEXXXXXXXXXXXXXXXXXXSTFSLILSEKLTTDIKIDQTLRDIAICASHPLIPYAFFYTFRDQEFHSFKLCGFISMREVSDRIINALLIALKFYAEKQNESLH---------NLSNYQKLEQIEHDKAFKQISLRERFQDPQSSIVISNSKI 659
            DE+ + E  C F V+YLG + +   +  ++ CE     +        +L ++  +L + ++++  + +DQT+  ++ CA        F Y  RD     +   GF++++E  +R+ +A+  A     EK+ +            N +++ +L       +F+Q ++ ER  DPQS+I+   S I
Sbjct:   30 DERKVREGSCSFQVKYLGCIEV-FESRGIQVCEDAVKALKNSGHHMAVLYVTGDALRVVDEISKGLIVDQTIEKVSFCAPDRNHEKGFAYICRDGTTRRWMCHGFLAVKESGERLSHAVGCAFAICLEKKQQREKEKVTVTYNDNGTSFSRL------GSFRQATMTERLTDPQSAILAGRSLI 206          
BLAST of SMED30017216 vs. Planmine SMEST
Match: SMESG000078082.1 (SMESG000078082.1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.697e-11
Identity = 60/232 (25.86%), Postives = 107/232 (46.12%), Query Frame = 3
Query:  135 DEKMIIENKCQFDVQYLGSVHIETPNDYVKCCEXXXXXXXXXXXXXXX-XXXSTFSLILSEKLTTDIKIDQTLRDIAICASHPLIPYAFFYTFRDQEFHSFKLCGFISMREVSDRIINALLIALKFYAEKQNESLHNLSNYQKLEQIE---HDKAFKQISLRERFQDPQSSIVISN-----------SKISCSKTCSDLKSIPRPKPG------KKNSFDLFPILNQNNLFK 767
            DE+ + E  C F V+YLG + +        C E LK L   KK      L +S  ++ +S++++  + +DQT+  ++ C+        F Y  RD     +    F++++E  +R+ +A+  A     EK+ +    ++    LE         +F+Q SL ER QDPQS+I+              + IS + T + +  +PRP         ++ S  +FP L +++ FK
Sbjct:   32 DERKVREGCCSFQVKYLGYIEVFDSRGMQVCEEALKALRRPKKKTIRAILYVSGDTIRVSDEISKGLIVDQTIEKVSFCSPDRNHKKGFAYICRDGTTRRWMCHAFLAVKETGERLSHAVGCAFAICLEKKQKRESEVAQSTILENKALQGKSGSFRQASLTERLQDPQSAIIAEPLASSPPHPPAINAISPNHTRASV--VPRPHASVTFFSERQTSLRMFPKLQESSPFK 261          
BLAST of SMED30017216 vs. Planmine SMEST
Match: SMESG000078082.1 (SMESG000078082.1)

HSP 1 Score: 65.855 bits (159), Expect = 2.055e-11
Identity = 60/232 (25.86%), Postives = 107/232 (46.12%), Query Frame = 3
Query:  135 DEKMIIENKCQFDVQYLGSVHIETPNDYVKCCEXXXXXXXXXXXXXXX-XXXSTFSLILSEKLTTDIKIDQTLRDIAICASHPLIPYAFFYTFRDQEFHSFKLCGFISMREVSDRIINALLIALKFYAEKQNESLHNLSNYQKLEQIE---HDKAFKQISLRERFQDPQSSIVISN-----------SKISCSKTCSDLKSIPRPKPG------KKNSFDLFPILNQNNLFK 767
            DE+ + E  C F V+YLG + +        C E LK L   KK      L +S  ++ +S++++  + +DQT+  ++ C+        F Y  RD     +    F++++E  +R+ +A+  A     EK+ +    ++    LE         +F+Q SL ER QDPQS+I+              + IS + T + +  +PRP         ++ S  +FP L +++ FK
Sbjct:   32 DERKVREGCCSFQVKYLGYIEVFDSRGMQVCEEALKALRRPKKKTIRAILYVSGDTIRVSDEISKGLIVDQTIEKVSFCSPDRNHKKGFAYICRDGTTRRWMCHAFLAVKETGERLSHAVGCAFAICLEKKQKRESEVAQSTILENKALQGKSGSFRQASLTERLQDPQSAIIAEPLASSPPHPPAINAISPNHTRASV--VPRPHASVTFFSERQTSLRMFPKLQESSPFK 261          
BLAST of SMED30017216 vs. Planmine SMEST
Match: SMESG000033358.1 (SMESG000033358.1)

HSP 1 Score: 64.3142 bits (155), Expect = 6.762e-11
Identity = 65/234 (27.78%), Postives = 108/234 (46.15%), Query Frame = 3
Query:  135 DEKMIIENKCQFDVQYLGSVHIETPNDYVKCCEXXXXXXXXXXXXXXXXX---XSTFSLILSEKLTTDIKIDQTLRDIAICASHPLIPYAFFYTFRDQEFHSFKLCGFISMREVSDRIINALLIALKFYAEKQNESL---------HNLSNYQKLEQIEHDKAFKQISLRERFQDPQSSIVI-----SNSKISCSKTCSDLKSIPRPKPG-----KKNSFDLFPILN-QNNLFK 767
            DEK + E  C F V+YLGS+ +        C E +K L+  K   K       +S  +L ++E+++  + +DQ +  ++ CA        F Y  RD     +   GF +++E  +R+ +A+  A     EK+ +            N +++ +L       +FKQ ++ ER  DPQS I+      S++  S + +     SIPRP        ++NS  +FP L  QNN FK
Sbjct:   33 DEKKVREGCCSFQVKYLGSIEVFESRGMPVCEEAMKQLLKYKSKKKSKRAILYVSGDALRVTEEISKGLIVDQVIEKVSFCAPDRNHKRGFAYICRDATTRRWLCHGFKAVKESGERLSHAVGCAFAVCLEKKQQREKDSVDVTFNENKTSFTRL------GSFKQATITERRLDPQSVIIAEPVSGSSNANSTNNSVPTPSSIPRPHASQSVLDRQNSMKIFPKLQEQNNPFK 260          
The following BLAST results are available for this feature:
BLAST of SMED30017216 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017216 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017216 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017216 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017216 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017216 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017216 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017216 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A095BUK22.064e-825.86Protein numb OS=Schistosoma haematobium OX=6185 GN... [more]
A0A430QHQ12.235e-825.86Numb OS=Schistosoma bovis OX=6184 GN=DC041_0005017... [more]
A0A183KB882.337e-825.86PID domain-containing protein OS=Schistosoma curas... [more]
A0A3Q0KF974.135e-825.86Cell polarity protein OS=Schistosoma mansoni OX=61... [more]
T1FXM14.462e-823.37PID domain-containing protein OS=Helobdella robust... [more]
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BLAST of SMED30017216 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017216 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017216 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017216 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017216 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30017216 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000078082.11.697e-1125.86SMESG000078082.1[more]
SMESG000078082.12.055e-1125.86SMESG000078082.1[more]
SMESG000033358.16.762e-1127.78SMESG000033358.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30017216 ID=SMED30017216|Name=SMED30017216|organism=Schmidtea mediterranea sexual|type=transcript|length=1238bp
AGCATTACAAAGAGTTAAGATGTTAATACTTTATTAATTTTTTATCAGTT
TTGTGTATTTTTCTCATTGAAATGAGTTGTTCTACAGAAAAAATTTCATC
ACTATCAAACAGTATTTCTAAGAAATGGGAATCTGATGAAAAAATGATCA
TAGAAAATAAATGTCAATTTGATGTTCAATATTTAGGTTCCGTTCATATC
GAAACGCCAAATGATTATGTGAAATGCTGTGAGGTTCTGAAAAATCTAAT
TGGCAAAAAAAAATTGGTTAAAGGCTTATTAAAAATAAGCACATTTTCAT
TAATTCTTTCTGAAAAATTAACGACGGACATAAAAATTGATCAGACCCTT
CGAGATATAGCTATTTGTGCTAGTCATCCATTAATTCCTTATGCATTCTT
TTATACATTTCGTGATCAGGAATTCCATTCATTTAAATTATGTGGATTCA
TTTCGATGAGAGAAGTGAGCGATCGAATTATCAACGCTTTACTAATTGCG
CTGAAATTTTATGCGGAAAAACAAAATGAATCTCTTCACAATCTCTCCAA
TTATCAAAAATTAGAGCAGATCGAACATGATAAAGCATTCAAGCAAATTA
GTCTTCGTGAAAGATTTCAAGATCCACAATCCTCAATTGTAATTTCAAAT
TCAAAAATCTCATGTTCTAAAACTTGCTCTGATTTGAAATCTATACCTCG
ACCTAAACCTGGAAAAAAAAATTCTTTCGATTTATTTCCCATTTTGAATC
AGAATAATTTATTTAAAAGTACCGAAAATCAAAACGGAAAATCAGTCGAT
TCTAAATTTGATCTAGGTGAAATTTTTATTCCTCAATTCAACGATAATCT
GAACTTTAATAGCGTTCCTATGAATAAATCTCAATCTGAAGCAATGGTGT
TCAATAGTTTACCCTGTTCCGTTATTGCTGATATAGAAAGCGACTCGAAA
CCAAGTTCCAAGTATGATGCATTGAAGATCAATGCTACTCCATTAGCATC
GGCAGGGTGGAGTGAAGAAATCATTGGAGCGGACAAACCGAAATCAATTA
AAATTAAAACAAATGAAATTGATAAAAAGTGTTTGGAATTTGACGAATTT
ATTTCAACTTTCATTGAAAATAGCGATTTGAAAAAGAAACTGAATTAAAT
GTTTTTATGAATTTTTAACTTTAACTAAAATTTTGATTATTTAGTAGATT
TATCTTGTAAAATATTTTTATTCGTAAATAAATTGAAC
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protein sequence of SMED30017216-orf-1

>SMED30017216-orf-1 ID=SMED30017216-orf-1|Name=SMED30017216-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=359bp
MSCSTEKISSLSNSISKKWESDEKMIIENKCQFDVQYLGSVHIETPNDYV
KCCEVLKNLIGKKKLVKGLLKISTFSLILSEKLTTDIKIDQTLRDIAICA
SHPLIPYAFFYTFRDQEFHSFKLCGFISMREVSDRIINALLIALKFYAEK
QNESLHNLSNYQKLEQIEHDKAFKQISLRERFQDPQSSIVISNSKISCSK
TCSDLKSIPRPKPGKKNSFDLFPILNQNNLFKSTENQNGKSVDSKFDLGE
IFIPQFNDNLNFNSVPMNKSQSEAMVFNSLPCSVIADIESDSKPSSKYDA
LKINATPLASAGWSEEIIGADKPKSIKIKTNEIDKKCLEFDEFISTFIEN
SDLKKKLN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000014zeta neoblast
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR011993PH-like_dom_sf
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011993PH-like domain superfamilyGENE3DG3DSA:2.30.29.30coord: 2..154
e-value: 1.5E-15
score: 58.9
NoneNo IPR availablePANTHERPTHR47368FAMILY NOT NAMEDcoord: 10..232
NoneNo IPR availablePANTHERPTHR47368:SF2coord: 10..232
NoneNo IPR availableSUPERFAMILYSSF50729PH domain-likecoord: 12..150