EGF-like domain-containing protein

Overview
NameEGF-like domain-containing protein
Smed IDSMED30017133
Length (bp)2001
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of EGF-like domain-containing protein (SMED30017133) t-SNE clustered cells

Violin plots show distribution of expression levels for EGF-like domain-containing protein (SMED30017133) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30017133

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
testisSMED30017133SMESG000012457.1 Contig946_SE3GPL10652PMID:20844018
Wang et al., 2010		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
early male germ cellSMED30017133SMESG000012457.1 Contig946_SE3GPL10652PMID:20844018
Wang et al., 2010		whole organism asexual adult cDNA to DNA expression microarray evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of EGF-like domain-containing protein vs. TrEMBL
Match: A0A158QEK1 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS7539 PE=4 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 4.103e-89
Identity = 163/451 (36.14%), Postives = 237/451 (52.55%), Query Frame = 1 
Query:  163 LRSLGDLTDPILRQNQYGFQPGLWGSQIMPINVWFLNVTMYRIKPQYVNDYIAEDIVKRLNKNSFSWILSSKQSVLINMNWLNLTRLCDEIRFPRCSWKYFINIADPSGMDYHLLKD--VNPYLSTMTAIKEDNYMFLKSYFVPVTLTDCYPIQSIDQMSAIYIYSVCFMYSEHWDSDSM--RICPDPCKGYPCRYIRNADVNSCQKLGIYKRDFSCACLRGYSWDVKSLSCLAENYCFTVCERKGTMKCNFSPNEGTIECICKNGFMGFDCSVLNNACIFADSIQN----------FITGLEACNVDEGNNKCFPLLGTGSYSCGCSPPFVADRNLPYDNCLAVMEQCANRLCVFGSCETSADGFRSYCQCDLDFKGEECDVPRGQWSSWSNWTQCFPDCGTDSIHQRIRYCVGQI-DDCIGHPEEVEKC-DVGICFYERPPEDITYDIF 1467
             +  G + DP   + +YGF  G++GS I+PI +WF           Y  D   +  ++ LN  +          + +++NWL +   CDEIRFPRCSW +F+N   P   DY LL+    +P +S             + Y +P     C+PI+S++Q S IYIY+ C  Y   W +     +ICP+PC   PC  +  A   SCQ LGI+K+DF C C+ G+ WD  + SC++EN C  +C    T  C   P   ++ C+C+ G+MG DCS L +AC+   S  +             G EAC     +NKC P LGT +Y C CS  +  DR LPYDNC A  + C+N++CV G C +S DG ++ C+C+  F G++CD   G W++WS+W+ C P CG   +  RIR C  +  +DC+G  E+VE C D   C      E+I +  F
Sbjct:    2 FQHFGTIKDPRFSKFRYGFPAGIYGSSIIPITIWF-----------YHWDITEDGKLRVLNFGTL---------IPMSINWLTIVSSCDEIRFPRCSWAHFVNFVQPLQFDYELLEQSGASPGIS-------------QEYMIPYIADGCWPIKSVEQASIIYIYAACIAY---WKTPGFDRQICPNPCAKSPCSVLPYARAGSCQILGIHKQDFKCDCVEGFYWDSNAFSCVSENRCEMLCHPNNTATCIQDPKSLSLTCVCRLGYMGHDCSELLDACLIGSSEYDPADDLTAKPIVPAGKEACG---ASNKCTPRLGTITYICHCSEDYRMDRTLPYDNCAAKRDPCSNKICVEGWCISSEDGKQAVCECEDGFGGDQCDQQLGGWTAWSSWSSCEPFCGDQRLRHRIRVCSSEREEDCVGPLEQVEPCSDAEPCPAALSTEEIEWQDF 413
[Close]
BLAST of EGF-like domain-containing protein vs. TrEMBL
Match: A0A183LG67 (Uncharacterized protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS2792 PE=4 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 6.352e-86
Identity = 165/478 (34.52%), Postives = 247/478 (51.67%), Query Frame = 1 
Query:  157 FGLRSLGDLTDPILRQNQYGFQPGLWGSQIMPINVWFLNVTMYRIKPQYVNDYIAEDIVKRLNKNSFSWILSSKQSVLINMNWLNLTRLCDEIRFPRCSWKYFINIADPSGMDYHLLKDVNPYLSTMTAIKEDNYMFLKSYFVPVTLTDCYPIQSIDQMSAIYIYSVCFMYSEHWDS-DSMRICPDPCKGYPCRYIRNADVNSCQKLGIYKRDFSCACLRGYSWDVKSLSCLAENYCFTVCERKGTMKCNFSPNEGTIECICKNGFMGFDCSVLNNACIF--------ADSIQNFITGLEACNVD-EGNNKCFPLLGTGSYSCGCSPPFVADRNLPYDNCLAVMEQCANRLCVFGSCETSADGFRSYCQCDLDFKGEECDVPRGQWSSWSNWTQCFPDCGTDSIHQRIRYCVGQ-IDDCIGHPEEVEKCDVGICFYERPP-EDITYDIFWSKWXXXXXXXXXXXXFVVLVSSILTLFR 1554
             G R+   +++P  R+ + GF PG++GS I+P  +W+           Y +    ED+    N N +          L ++NW ++  LCDE + PRCSW YF+ +  P+  + HLLK +          +E      K +  P+    CY +++IDQMS IYIY++C +Y E  ++   + +CP+PCK  PC YIRNA   SC++ G +K D+ C C  GY W+   LSC   + C   C  + T  C  +   G   CICK G+ G+DC+   +ACIF         D+I    +G EAC V     NKC  +    +Y+C CS  +  D +LPYDNCL   + C  RLC+ G C +S D   S C C+  ++GE+CD+PR  WS WS WT C  D G+     RIR C+ +  +DC+G  E+V  C+  I F +     +IT++ F          T+ Y+ FV ++   L L++
Sbjct:   46 IGFRTFQQMSNPQYREYENGFPPGIYGSSIIPTTIWY----------HYWSQDTYEDMFPH-NGNMY----------LADVNWPHIVTLCDETKHPRCSWAYFLALMQPTSHNPHLLKQI--------FGEEFERSSNKHFITPIIRGGCYRLRTIDQMSLIYIYTICHLYGEMKEAIPDLEVCPNPCKRRPCHYIRNAVGGSCKRRGYHKDDYECLCESGYKWEKDLLSCTIIDTCKLFCNHETTESCFLNQTTGVATCICKTGYTGYDCNQPFDACIFDTTLKMNPLDAIPYIPSGYEACGVLLNPTNKCNSMNDMLTYNCTCSIGYTRDLSLPYDNCLKQKDGCDTRLCLHGECISSKDLTNSVCDCEEGYRGEKCDIPRSIWSDWSEWTFCEQDFGSTGQSTRIRLCLYENEEDCVGESEQVRLCEPNITFTQNASISEITWNDFTQWSENAMLYTLVYVGFVAILLKFLNLYK 494
[Close]
BLAST of EGF-like domain-containing protein vs. TrEMBL
Match: A0A430QA74 (Uncharacterized protein OS=Schistosoma bovis OX=6184 GN=DC041_0009457 PE=4 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.474e-83
Identity = 163/478 (34.10%), Postives = 248/478 (51.88%), Query Frame = 1 
Query:  157 FGLRSLGDLTDPILRQNQYGFQPGLWGSQIMPINVWFLNVTMYRIKPQYVNDYIAEDIVKRLNKNSFSWILSSKQSVLINMNWLNLTRLCDEIRFPRCSWKYFINIADPSGMDYHLLKDVNPYLSTMTAIKEDNYMFLKSYFVPVTLTDCYPIQSIDQMSAIYIYSVCFMYSEHWDS-DSMRICPDPCKGYPCRYIRNADVNSCQKLGIYKRDFSCACLRGYSWDVKSLSCLAENYCFTVCERKGTMKCNFSPNEGTIECICKNGFMGFDCSVLNNACIF--------ADSIQNFITGLEACNVD-EGNNKCFPLLGTGSYSCGCSPPFVADRNLPYDNCLAVMEQCANRLCVFGSCETSADGFRSYCQCDLDFKGEECDVPRGQWSSWSNWTQCFPDCGTDSIHQRIRYCVGQ-IDDCIGHPEEVEKCDVGICFYERPP-EDITYDIFWSKWXXXXXXXXXXXXFVVLVSSILTLFR 1554
             G R+   +++P  R+ + GF PG++GS I+P  +W+     Y  +  Y      ED+    N N +          L ++NW ++  LCDE + PRCSW YF+ +  P+  + HLLK +          +E   +  K +  P+    CY +++IDQMS IYIY++C +Y E  ++   + +CP+PCK  PC YI+NA   SC++ G +K D+ C C  GY W+   L C   + C   C ++ T  C  +   G   CICK G+ G+DC+   +ACIF         D+     +G EAC V     NKC  +    +Y+C CS  +  D +LPYDNCL   + C  RLC+ G C +S D   S C C+  ++GE+CD+PR  WS WS WT C  D G+     RIR C+ +  +DC+G  E+V  C+  I F +     +IT++ F          T+ Y+ FV ++   L L++
Sbjct:   42 IGFRTFQQMSNPQYREYENGFPPGIYGSSIIPTTIWY----HYWSRDNY------EDMFPH-NGNMY----------LADVNWPHIVTLCDETKHPRCSWAYFLALMQPTSHNPHLLKQI--------FGEEFERLSNKHFITPIIRGGCYRLRTIDQMSLIYIYTICHLYGEVKEAIPDLEVCPNPCKRRPCHYIQNAVGGSCKRRGYHKDDYECLCQSGYKWEKDLLLCTIIDTCKLFCNQETTESCFLNQTTGVATCICKTGYTGYDCNQPFDACIFDTTLKMNPLDASPYIPSGYEACGVLLNPTNKCNSMNDMLTYNCTCSIGYTRDLSLPYDNCLKQKDGCDTRLCLHGECISSKDLTNSVCDCEEGYRGEKCDIPRSIWSHWSEWTFCEQDLGSTGQSTRIRLCLYENEEDCVGELEQVRLCEPNITFTQNASISEITWNDFTQWSENAMLYTLVYVGFVAILLKFLNLYK 490
[Close]
BLAST of EGF-like domain-containing protein vs. TrEMBL
Match: A0A075A212 (Uncharacterized protein OS=Opisthorchis viverrini OX=6198 GN=T265_10234 PE=4 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.698e-83
Identity = 169/485 (34.85%), Postives = 238/485 (49.07%), Query Frame = 1 
Query:   52 IVFSFLTNGSFAFSGIKFYE-EYMKLRG--KEDAFKIIFGLRSLGDLTDPILRQNQYGFQPGLWGSQIMPINVWFLNVTMYRIKPQYVNDYIAEDIVKRLNKNSFSWILSSKQSVLINMNWLNLTRLCDEIRFPRCSWKYFINIADPSGMDYHLLKDVNPYLSTMTAIKEDNYMFLKSYFVPVTLTDCYPIQSIDQMSAIYIYSVCFMYS-EHWDSDSMRI-CPDPCKGYPCRYIRNADVNSCQKLGIYKRDFSCACLRGYSWDVKSLSCLAENYCFTVCERKGTMKCNFSPNEGTIECICKNGFMGFDCSVLNNACIFADSIQN--------FITGLEACNVD-EGNNKCFPLLGTGSYSCGCSPPFVADRNLPYDNCLAVMEQCANRLCVFGSCETSADGFRSYCQCDLDFKGEECDVPRGQWSSWSNWTQCFPDCGTDSIHQRIRYCVGQID-DCIGHPEEVEKC-DVGICFYERPPEDITY 1458
            +V S L    +   G+ F + E M  R   K D+    FG R    + +P  R  +YGF PG++GS I+PI +WF       ++  Y                     L S    L+ +++  + + C+E   PRCSW  F+ +  P+G    LL         +       Y+    Y VP+T   CYP  SIDQMS IYIY VC M+  E+ +   + I CP+PC   PCR I  A   SC+  G +  DF+C C +GY W+  ++ C  ++ C  +C    TM C  +    T  C CK+GFMGFDCS   +AC+   +             +G EAC    +  N CF +  T +Y+C CSP +V D  LPYDNCL  ++ C  R+CV G C TS D  +S C CD  + G  CD   G WS WS W+ C P CG     +R+R C+ + + DCIG  EEV +C +   CF + P E+ T+
Sbjct:    6 LVVSLLLCQPYGGGGVGFDDLENMLERKFYKPDSRWHAFGFRWFDRMENPAYRSYKYGFPPGIYGSSIIPITMWFHLWCFGSVEDMY---------------------LQSHNVRLVTLDYNAMIQSCNEPELPRCSWHLFVALYQPNGYREELLD--------ILIKDHRQYVEKDCYPVPITQGSCYPFTSIDQMSLIYIYHVCHMFKPENAEGLHLEILCPNPCGRRPCRSIDAAIPGSCESYGFHMNDFTCKCEQGYEWENSTMLCSIDDNCGKICHENNTMGCIVNRTSATAICRCKDGFMGFDCSQKYDACVLGKAPDARGLNVGPVVPSGYEACGATLDARNLCFSIPNTTTYTCVCSPAYVRDVALPYDNCLKPLDSCDKRICVHGQCVTSPDLLKSACDCDEGYTGSLCDQTTGTWSHWSEWSNCEPVCGPVRHRRRLRMCMSENEGDCIGPVEEVRQCVENSGCFQDVPVEEETW 461
[Close]
BLAST of EGF-like domain-containing protein vs. TrEMBL
Match: G7YMV9 (Neurogenic locus notch homolog protein 1 OS=Clonorchis sinensis OX=79923 GN=CLF_113570 PE=4 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.039e-83
Identity = 160/458 (34.93%), Postives = 229/458 (50.00%), Query Frame = 1 
Query:  133 KEDAFKIIFGLRSLGDLTDPILRQNQYGFQPGLWGSQIMPINVWFLNVTMYRIKPQYVNDYIAEDIVKRLNKNSFSWILSSKQSVLINMNWLNLTRLCDEIRFPRCSWKYFINIADPSGMDYHLLKDVNPYLSTMTAIKEDNYMFLKS--YFVPVTLTDCYPIQSIDQMSAIYIYSVCFMYSEHWDSDSMRI---CPDPCKGYPCRYIRNADVNSCQKLGIYKRDFSCACLRGYSWDVKSLSCLAENYCFTVCERKGTMKCNFSPNEGTIECICKNGFMGFDCSVLNNACIFADSIQN--------FITGLEACNVD-EGNNKCFPLLGTGSYSCGCSPPFVADRNLPYDNCLAVMEQCANRLCVFGSCETSADGFRSYCQCDLDFKGEECDVPRGQWSSWSNWTQCFPDCGTDSIHQRIRYCVGQID-DCIGHPEEVEKC-DVGICFYERPPEDITY 1458
            K D+    FG R    + +P  R  +YGF PG++GS I+PI +WF       ++  Y                     L S    L+ +++  + + C+E   PRCSW  F+++  P+G    LL            + +D+  F++   Y VP+T   CYP  SIDQMS IYIY VC M+    D+  + +   CP+PC   PCR I  A   SC+  G +  DF+C C +GY W+  ++ C  ++ C  +C    TM C  +    T  C CK+GFMGFDCS   +AC+   +             +G EAC    +  N CF +  T +Y+C CSP +V D  LPYDNCL  ++ C  R+CV G C TS D  +S C CD  + G  CD   G WS WS W+ C P CG     +R+R C+ + + DCIG  EEV +C +   C  + P E+ T+
Sbjct:   36 KPDSRWHAFGFRWFDRMENPAYRSYKYGFPPGIYGSSIIPITMWFHLWCFGSVEDMY---------------------LQSHNVRLVTLDYNAMIQSCNEAELPRCSWHLFVSLYQPNGYREELLN----------ILIKDHKRFVEKDCYPVPITQGSCYPFTSIDQMSLIYIYHVCHMFKPE-DAKGLHLEILCPNPCGRRPCRSIEAAIPGSCESYGFHVNDFTCKCEQGYEWEKSTMLCSIDDNCGKICHENNTMGCIVNRTSATAICRCKDGFMGFDCSQPYDACVLGKAPDARGLNVGPVVPSGYEACGATLDARNLCFSIPNTTTYACVCSPAYVRDVALPYDNCLKPLDSCDKRICVHGQCVTSPDLLKSACDCDEGYTGSLCDQTTGTWSHWSEWSNCEPVCGPVRHRRRLRMCMSENEGDCIGPVEEVRRCVETSGCVQDVPVEEETW 461
[Close]
BLAST of EGF-like domain-containing protein vs. Planmine SMEST
Match: SMESG000012457.1 (SMESG000012457.1)

HSP 1 Score: 1193.33 bits (3086), Expect = 0.000e+0
Identity = 606/606 (100.00%), Postives = 606/606 (100.00%), Query Frame = 1 
Query:   25 MNAKFLILQIVFSFLTNGSFAFSGIKFYEEYMKLRGKEDAFKIIFGLRSLGDLTDPILRQNQYGFQPGLWGSQIMPINVWFLNVTMYRIKPQYVNDYIAEDIVKRLNKNSFSWILSSKQSVLINMNWLNLTRLCDEIRFPRCSWKYFINIADPSGMDYHLLKDVNPYLSTMTAIKEDNYMFLKSYFVPVTLTDCYPIQSIDQMSAIYIYSVCFMYSEHWDSDSMRICPDPCKGYPCRYIRNADVNSCQKLGIYKRDFSCACLRGYSWDVKSLSCLAENYCFTVCERKGTMKCNFSPNEGTIECICKNGFMGFDCSVLNNACIFADSIQNFITGLEACNVDEGNNKCFPLLGTGSYSCGCSPPFVADRNLPYDNCLAVMEQCANRLCVFGSCETSADGFRSYCQCDLDFKGEECDVPRGQWSSWSNWTQCFPDCGTDSIHQRIRYCVGQIDDCIGHPEEVEKCDVGICFYERPPEDITYDIFWSKWXXXXXXXXXXXXFVVLVSSILTLFRXXXXXXXXXXXXXXXXMNLAKSIRRIKMKYGLTLNAENVMETLEELWNPDADDDELKMNLKVINEILMKIQKKNPKVFQFVSERSEIAALALSYNQ 1842
            MNAKFLILQIVFSFLTNGSFAFSGIKFYEEYMKLRGKEDAFKIIFGLRSLGDLTDPILRQNQYGFQPGLWGSQIMPINVWFLNVTMYRIKPQYVNDYIAEDIVKRLNKNSFSWILSSKQSVLINMNWLNLTRLCDEIRFPRCSWKYFINIADPSGMDYHLLKDVNPYLSTMTAIKEDNYMFLKSYFVPVTLTDCYPIQSIDQMSAIYIYSVCFMYSEHWDSDSMRICPDPCKGYPCRYIRNADVNSCQKLGIYKRDFSCACLRGYSWDVKSLSCLAENYCFTVCERKGTMKCNFSPNEGTIECICKNGFMGFDCSVLNNACIFADSIQNFITGLEACNVDEGNNKCFPLLGTGSYSCGCSPPFVADRNLPYDNCLAVMEQCANRLCVFGSCETSADGFRSYCQCDLDFKGEECDVPRGQWSSWSNWTQCFPDCGTDSIHQRIRYCVGQIDDCIGHPEEVEKCDVGICFYERPPEDITYDIFWSKWLILTTITIGYLIFVVLVSSILTLFRSQKSKADKKAASKIKKMNLAKSIRRIKMKYGLTLNAENVMETLEELWNPDADDDELKMNLKVINEILMKIQKKNPKVFQFVSERSEIAALALSYNQ
Sbjct:    1 MNAKFLILQIVFSFLTNGSFAFSGIKFYEEYMKLRGKEDAFKIIFGLRSLGDLTDPILRQNQYGFQPGLWGSQIMPINVWFLNVTMYRIKPQYVNDYIAEDIVKRLNKNSFSWILSSKQSVLINMNWLNLTRLCDEIRFPRCSWKYFINIADPSGMDYHLLKDVNPYLSTMTAIKEDNYMFLKSYFVPVTLTDCYPIQSIDQMSAIYIYSVCFMYSEHWDSDSMRICPDPCKGYPCRYIRNADVNSCQKLGIYKRDFSCACLRGYSWDVKSLSCLAENYCFTVCERKGTMKCNFSPNEGTIECICKNGFMGFDCSVLNNACIFADSIQNFITGLEACNVDEGNNKCFPLLGTGSYSCGCSPPFVADRNLPYDNCLAVMEQCANRLCVFGSCETSADGFRSYCQCDLDFKGEECDVPRGQWSSWSNWTQCFPDCGTDSIHQRIRYCVGQIDDCIGHPEEVEKCDVGICFYERPPEDITYDIFWSKWLILTTITIGYLIFVVLVSSILTLFRSQKSKADKKAASKIKKMNLAKSIRRIKMKYGLTLNAENVMETLEELWNPDADDDELKMNLKVINEILMKIQKKNPKVFQFVSERSEIAALALSYNQ 606
[Close]
BLAST of EGF-like domain-containing protein vs. Planmine SMEST
Match: SMESG000012457.1 (SMESG000012457.1)

HSP 1 Score: 1130.16 bits (2922), Expect = 0.000e+0
Identity = 575/575 (100.00%), Postives = 575/575 (100.00%), Query Frame = 1 
Query:  118 MKLRGKEDAFKIIFGLRSLGDLTDPILRQNQYGFQPGLWGSQIMPINVWFLNVTMYRIKPQYVNDYIAEDIVKRLNKNSFSWILSSKQSVLINMNWLNLTRLCDEIRFPRCSWKYFINIADPSGMDYHLLKDVNPYLSTMTAIKEDNYMFLKSYFVPVTLTDCYPIQSIDQMSAIYIYSVCFMYSEHWDSDSMRICPDPCKGYPCRYIRNADVNSCQKLGIYKRDFSCACLRGYSWDVKSLSCLAENYCFTVCERKGTMKCNFSPNEGTIECICKNGFMGFDCSVLNNACIFADSIQNFITGLEACNVDEGNNKCFPLLGTGSYSCGCSPPFVADRNLPYDNCLAVMEQCANRLCVFGSCETSADGFRSYCQCDLDFKGEECDVPRGQWSSWSNWTQCFPDCGTDSIHQRIRYCVGQIDDCIGHPEEVEKCDVGICFYERPPEDITYDIFWSKWXXXXXXXXXXXXFVVLVSSILTLFRXXXXXXXXXXXXXXXXMNLAKSIRRIKMKYGLTLNAENVMETLEELWNPDADDDELKMNLKVINEILMKIQKKNPKVFQFVSERSEIAALALSYNQ 1842
            MKLRGKEDAFKIIFGLRSLGDLTDPILRQNQYGFQPGLWGSQIMPINVWFLNVTMYRIKPQYVNDYIAEDIVKRLNKNSFSWILSSKQSVLINMNWLNLTRLCDEIRFPRCSWKYFINIADPSGMDYHLLKDVNPYLSTMTAIKEDNYMFLKSYFVPVTLTDCYPIQSIDQMSAIYIYSVCFMYSEHWDSDSMRICPDPCKGYPCRYIRNADVNSCQKLGIYKRDFSCACLRGYSWDVKSLSCLAENYCFTVCERKGTMKCNFSPNEGTIECICKNGFMGFDCSVLNNACIFADSIQNFITGLEACNVDEGNNKCFPLLGTGSYSCGCSPPFVADRNLPYDNCLAVMEQCANRLCVFGSCETSADGFRSYCQCDLDFKGEECDVPRGQWSSWSNWTQCFPDCGTDSIHQRIRYCVGQIDDCIGHPEEVEKCDVGICFYERPPEDITYDIFWSKWLILTTITIGYLIFVVLVSSILTLFRSQKSKADKKAASKIKKMNLAKSIRRIKMKYGLTLNAENVMETLEELWNPDADDDELKMNLKVINEILMKIQKKNPKVFQFVSERSEIAALALSYNQ
Sbjct:    1 MKLRGKEDAFKIIFGLRSLGDLTDPILRQNQYGFQPGLWGSQIMPINVWFLNVTMYRIKPQYVNDYIAEDIVKRLNKNSFSWILSSKQSVLINMNWLNLTRLCDEIRFPRCSWKYFINIADPSGMDYHLLKDVNPYLSTMTAIKEDNYMFLKSYFVPVTLTDCYPIQSIDQMSAIYIYSVCFMYSEHWDSDSMRICPDPCKGYPCRYIRNADVNSCQKLGIYKRDFSCACLRGYSWDVKSLSCLAENYCFTVCERKGTMKCNFSPNEGTIECICKNGFMGFDCSVLNNACIFADSIQNFITGLEACNVDEGNNKCFPLLGTGSYSCGCSPPFVADRNLPYDNCLAVMEQCANRLCVFGSCETSADGFRSYCQCDLDFKGEECDVPRGQWSSWSNWTQCFPDCGTDSIHQRIRYCVGQIDDCIGHPEEVEKCDVGICFYERPPEDITYDIFWSKWLILTTITIGYLIFVVLVSSILTLFRSQKSKADKKAASKIKKMNLAKSIRRIKMKYGLTLNAENVMETLEELWNPDADDDELKMNLKVINEILMKIQKKNPKVFQFVSERSEIAALALSYNQ 575
[Close]
BLAST of EGF-like domain-containing protein vs. Planmine SMEST
Match: SMESG000012457.1 (SMESG000012457.1)

HSP 1 Score: 958.362 bits (2476), Expect = 0.000e+0
Identity = 458/458 (100.00%), Postives = 458/458 (100.00%), Query Frame = 1 
Query:   25 MNAKFLILQIVFSFLTNGSFAFSGIKFYEEYMKLRGKEDAFKIIFGLRSLGDLTDPILRQNQYGFQPGLWGSQIMPINVWFLNVTMYRIKPQYVNDYIAEDIVKRLNKNSFSWILSSKQSVLINMNWLNLTRLCDEIRFPRCSWKYFINIADPSGMDYHLLKDVNPYLSTMTAIKEDNYMFLKSYFVPVTLTDCYPIQSIDQMSAIYIYSVCFMYSEHWDSDSMRICPDPCKGYPCRYIRNADVNSCQKLGIYKRDFSCACLRGYSWDVKSLSCLAENYCFTVCERKGTMKCNFSPNEGTIECICKNGFMGFDCSVLNNACIFADSIQNFITGLEACNVDEGNNKCFPLLGTGSYSCGCSPPFVADRNLPYDNCLAVMEQCANRLCVFGSCETSADGFRSYCQCDLDFKGEECDVPRGQWSSWSNWTQCFPDCGTDSIHQRIRYCVGQIDDCIGHPEE 1398
            MNAKFLILQIVFSFLTNGSFAFSGIKFYEEYMKLRGKEDAFKIIFGLRSLGDLTDPILRQNQYGFQPGLWGSQIMPINVWFLNVTMYRIKPQYVNDYIAEDIVKRLNKNSFSWILSSKQSVLINMNWLNLTRLCDEIRFPRCSWKYFINIADPSGMDYHLLKDVNPYLSTMTAIKEDNYMFLKSYFVPVTLTDCYPIQSIDQMSAIYIYSVCFMYSEHWDSDSMRICPDPCKGYPCRYIRNADVNSCQKLGIYKRDFSCACLRGYSWDVKSLSCLAENYCFTVCERKGTMKCNFSPNEGTIECICKNGFMGFDCSVLNNACIFADSIQNFITGLEACNVDEGNNKCFPLLGTGSYSCGCSPPFVADRNLPYDNCLAVMEQCANRLCVFGSCETSADGFRSYCQCDLDFKGEECDVPRGQWSSWSNWTQCFPDCGTDSIHQRIRYCVGQIDDCIGHPEE
Sbjct:    1 MNAKFLILQIVFSFLTNGSFAFSGIKFYEEYMKLRGKEDAFKIIFGLRSLGDLTDPILRQNQYGFQPGLWGSQIMPINVWFLNVTMYRIKPQYVNDYIAEDIVKRLNKNSFSWILSSKQSVLINMNWLNLTRLCDEIRFPRCSWKYFINIADPSGMDYHLLKDVNPYLSTMTAIKEDNYMFLKSYFVPVTLTDCYPIQSIDQMSAIYIYSVCFMYSEHWDSDSMRICPDPCKGYPCRYIRNADVNSCQKLGIYKRDFSCACLRGYSWDVKSLSCLAENYCFTVCERKGTMKCNFSPNEGTIECICKNGFMGFDCSVLNNACIFADSIQNFITGLEACNVDEGNNKCFPLLGTGSYSCGCSPPFVADRNLPYDNCLAVMEQCANRLCVFGSCETSADGFRSYCQCDLDFKGEECDVPRGQWSSWSNWTQCFPDCGTDSIHQRIRYCVGQIDDCIGHPEE 458

HSP 2 Score: 119.783 bits (299), Expect = 2.399e-28
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query: 1663 ENVMETLEELWNPDADDDELKMNLKVINEILMKIQKKNPKVFQFVSERSEIAALALSYNQ 1842
            ENVMETLEELWNPDADDDELKMNLKVINEILMKIQKKNPKVFQFVSERSEIAALALSYNQ
Sbjct:  459 ENVMETLEELWNPDADDDELKMNLKVINEILMKIQKKNPKVFQFVSERSEIAALALSYNQ 518
[Close]
BLAST of EGF-like domain-containing protein vs. Planmine SMEST
Match: SMESG000012457.1 (SMESG000012457.1)

HSP 1 Score: 894.419 bits (2310), Expect = 0.000e+0
Identity = 427/427 (100.00%), Postives = 427/427 (100.00%), Query Frame = 1 
Query:  118 MKLRGKEDAFKIIFGLRSLGDLTDPILRQNQYGFQPGLWGSQIMPINVWFLNVTMYRIKPQYVNDYIAEDIVKRLNKNSFSWILSSKQSVLINMNWLNLTRLCDEIRFPRCSWKYFINIADPSGMDYHLLKDVNPYLSTMTAIKEDNYMFLKSYFVPVTLTDCYPIQSIDQMSAIYIYSVCFMYSEHWDSDSMRICPDPCKGYPCRYIRNADVNSCQKLGIYKRDFSCACLRGYSWDVKSLSCLAENYCFTVCERKGTMKCNFSPNEGTIECICKNGFMGFDCSVLNNACIFADSIQNFITGLEACNVDEGNNKCFPLLGTGSYSCGCSPPFVADRNLPYDNCLAVMEQCANRLCVFGSCETSADGFRSYCQCDLDFKGEECDVPRGQWSSWSNWTQCFPDCGTDSIHQRIRYCVGQIDDCIGHPEE 1398
            MKLRGKEDAFKIIFGLRSLGDLTDPILRQNQYGFQPGLWGSQIMPINVWFLNVTMYRIKPQYVNDYIAEDIVKRLNKNSFSWILSSKQSVLINMNWLNLTRLCDEIRFPRCSWKYFINIADPSGMDYHLLKDVNPYLSTMTAIKEDNYMFLKSYFVPVTLTDCYPIQSIDQMSAIYIYSVCFMYSEHWDSDSMRICPDPCKGYPCRYIRNADVNSCQKLGIYKRDFSCACLRGYSWDVKSLSCLAENYCFTVCERKGTMKCNFSPNEGTIECICKNGFMGFDCSVLNNACIFADSIQNFITGLEACNVDEGNNKCFPLLGTGSYSCGCSPPFVADRNLPYDNCLAVMEQCANRLCVFGSCETSADGFRSYCQCDLDFKGEECDVPRGQWSSWSNWTQCFPDCGTDSIHQRIRYCVGQIDDCIGHPEE
Sbjct:    1 MKLRGKEDAFKIIFGLRSLGDLTDPILRQNQYGFQPGLWGSQIMPINVWFLNVTMYRIKPQYVNDYIAEDIVKRLNKNSFSWILSSKQSVLINMNWLNLTRLCDEIRFPRCSWKYFINIADPSGMDYHLLKDVNPYLSTMTAIKEDNYMFLKSYFVPVTLTDCYPIQSIDQMSAIYIYSVCFMYSEHWDSDSMRICPDPCKGYPCRYIRNADVNSCQKLGIYKRDFSCACLRGYSWDVKSLSCLAENYCFTVCERKGTMKCNFSPNEGTIECICKNGFMGFDCSVLNNACIFADSIQNFITGLEACNVDEGNNKCFPLLGTGSYSCGCSPPFVADRNLPYDNCLAVMEQCANRLCVFGSCETSADGFRSYCQCDLDFKGEECDVPRGQWSSWSNWTQCFPDCGTDSIHQRIRYCVGQIDDCIGHPEE 427

HSP 2 Score: 119.398 bits (298), Expect = 2.445e-28
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query: 1663 ENVMETLEELWNPDADDDELKMNLKVINEILMKIQKKNPKVFQFVSERSEIAALALSYNQ 1842
            ENVMETLEELWNPDADDDELKMNLKVINEILMKIQKKNPKVFQFVSERSEIAALALSYNQ
Sbjct:  428 ENVMETLEELWNPDADDDELKMNLKVINEILMKIQKKNPKVFQFVSERSEIAALALSYNQ 487
[Close]
BLAST of EGF-like domain-containing protein vs. Planmine SMEST
Match: SMESG000034880.1 (SMESG000034880.1)

HSP 1 Score: 165.236 bits (417), Expect = 1.453e-42
Identity = 92/271 (33.95%), Postives = 134/271 (49.45%), Query Frame = 1 
Query:  625 DQMSAIYIYSVCFMYSEHWDSDSMRICPDPCKGYPCRYIRNADVNSC--QKLGIYKRDFSCACLRGYSWDVKSLSCLAENYCFT--VCERKGTMKCNFSPNEGTIECICKNGFMGFDCSVLNNACIFADSIQNFITGLEACNVDEGNNKCFPLLGTGSYSCGCSPPFVADRNLPYDNCLAVMEQCANRLCVFGSCETSADGFRSYCQCDLDFKGEECDVPRGQWSSWSNWTQCFPDCGTDSIHQRIRYCVGQIDDCIGHPEEVEKCDVGIC 1425
            D++SA YIY +C +  E    D   ICPDPCK  PC  + N     C  +  G++  DF C C  G+ W   + +C   + C +  +C  KGT +C + P++    C CK  +MG  CSVL + CI   S    ++G   CN  +GN  C  + GT  + C CS  +  D +    NCL+  + C+  +C  G C +S DG  + C C  +  GE C++ R  W  W  W+ C P CG      R+RYC G   DC+G   +++ C    C
Sbjct:  486 DEVSASYIYMICTIIRERGMDDP--ICPDPCKRSPCASVPNVITEMCFQENQGLFDTDFRCKCKEGFIWKSSTKTCEPFDLCLSENICYPKGTFRCVYIPDKMESRCECKVSYMGGRCSVLRDPCIETSS-HTEMSGNMYCNTGQGN-MCIGIPGTDQFECICSKSWTQDYSYTISNCLSFRDLCSKSICQSGDCVSSKDGQTTRCICPPELTGENCNLKRSIWGRWLPWSTCDPICGLVRRSIRVRYCNG--FDCLGERRQIKLCQPNYC 750
The following BLAST results are available for this feature:
BLAST of EGF-like domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EGF-like domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EGF-like domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EGF-like domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EGF-like domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EGF-like domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EGF-like domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EGF-like domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A158QEK14.103e-8936.14Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
A0A183LG676.352e-8634.52Uncharacterized protein OS=Schistosoma margrebowie... [more]
A0A430QA741.474e-8334.10Uncharacterized protein OS=Schistosoma bovis OX=61... [more]
A0A075A2121.698e-8334.85Uncharacterized protein OS=Opisthorchis viverrini ... [more]
G7YMV92.039e-8334.93Neurogenic locus notch homolog protein 1 OS=Clonor... [more]
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BLAST of EGF-like domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EGF-like domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EGF-like domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EGF-like domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EGF-like domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EGF-like domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000012457.10.000e+0100.00SMESG000012457.1[more]
SMESG000012457.10.000e+0100.00SMESG000012457.1[more]
SMESG000012457.12.399e-28100.00SMESG000012457.1[more]
SMESG000012457.12.445e-28100.00SMESG000012457.1[more]
SMESG000034880.11.453e-4233.95SMESG000034880.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30017133 ID=SMED30017133|Name=EGF-like domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2001bp
TATCGACAAATTTAATATTTTTTCATGAATGCAAAATTTTTAATATTACA
AATTGTGTTCTCCTTTCTCACGAATGGCTCTTTTGCATTTAGCGGAATAA
AATTTTATGAAGAATACATGAAATTGCGCGGAAAAGAAGATGCATTTAAA
ATTATATTTGGTTTGCGTTCATTGGGGGATTTGACAGATCCGATTTTGCG
TCAAAACCAATATGGATTTCAACCGGGTTTATGGGGAAGTCAAATTATGC
CGATAAACGTTTGGTTCCTTAACGTGACAATGTACCGAATCAAGCCCCAA
TATGTGAATGACTATATTGCGGAAGATATAGTTAAAAGATTAAATAAAAA
TTCTTTCTCGTGGATATTGAGTTCTAAACAATCAGTGTTAATCAATATGA
ATTGGCTGAATCTCACTCGTCTGTGTGACGAGATCCGGTTTCCTCGATGT
TCGTGGAAATACTTCATAAATATAGCAGATCCTTCTGGAATGGATTATCA
TCTACTCAAAGATGTCAATCCGTATCTCTCTACTATGACTGCTATAAAAG
AAGATAATTATATGTTTTTAAAGAGTTATTTCGTTCCAGTGACCCTAACA
GACTGCTATCCAATTCAGTCAATAGACCAGATGAGTGCAATTTATATTTA
TTCTGTATGTTTTATGTATTCTGAACATTGGGATTCGGACTCCATGAGAA
TTTGTCCTGACCCTTGTAAAGGTTACCCCTGTCGATATATTCGTAACGCT
GACGTAAACAGCTGCCAAAAGTTGGGTATTTATAAAAGAGATTTTAGCTG
TGCTTGTTTGCGGGGATATTCATGGGACGTGAAAAGTTTGTCATGTCTGG
CAGAAAATTATTGTTTTACGGTTTGTGAAAGAAAGGGCACCATGAAATGT
AACTTCTCACCGAATGAAGGAACCATCGAATGTATCTGCAAAAATGGATT
CATGGGTTTCGATTGTTCAGTGCTCAATAATGCGTGCATATTTGCTGACA
GTATTCAAAATTTTATTACTGGCCTGGAAGCTTGTAATGTTGATGAAGGT
AATAATAAATGCTTTCCACTCTTAGGAACAGGGTCATATTCATGCGGATG
TTCACCACCATTTGTTGCGGATCGGAACCTGCCATATGATAATTGCTTGG
CAGTAATGGAGCAATGTGCTAATCGCCTATGCGTATTTGGAAGTTGTGAA
ACTTCAGCGGATGGATTTCGATCATATTGCCAGTGTGATCTGGATTTTAA
GGGAGAAGAGTGTGATGTTCCAAGAGGTCAATGGTCATCGTGGTCAAATT
GGACTCAGTGTTTTCCAGATTGTGGAACAGATTCGATTCATCAAAGAATA
AGATACTGTGTGGGACAAATTGATGATTGTATTGGGCATCCAGAAGAAGT
AGAAAAATGTGATGTCGGAATATGCTTTTATGAGAGGCCTCCTGAAGACA
TTACTTATGATATTTTCTGGTCAAAGTGGCTTATTCTGACTACTATCACC
ATCGGATACTTAATTTTTGTAGTTCTCGTCAGTAGTATCCTAACACTGTT
TCGCTCTCAAAAATCCAAAGCCGACAAAAAAGCGGCCTCAAAGATTAAGA
AGATGAATTTAGCGAAATCTATAAGAAGGATCAAAATGAAATACGGTTTA
ACGTTAAATGCTGAGAATGTCATGGAAACCTTGGAGGAACTATGGAATCC
TGACGCGGACGATGATGAGCTCAAAATGAATTTGAAAGTCATCAATGAAA
TTTTGATGAAAATACAGAAAAAGAATCCAAAGGTTTTCCAATTCGTTTCA
GAAAGAAGCGAAATCGCAGCATTGGCACTGTCCTATAATCAATGACACTT
TATGAGAGATAAGTGGAAGAAAAAAAGAACACGAAGACTTCAACGAAAAA
GGAGGAAGATGCGTTCCAAGAAATAAAGCTGATTCTATAGAATTTTGGAG
TTAAAATATTCTTTTGTCACAATAAAAGATTCATTTTCATAGATCGGAAG
A
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protein sequence of SMED30017133-orf-1

>SMED30017133-orf-1 ID=SMED30017133-orf-1|Name=SMED30017133-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=607bp
MNAKFLILQIVFSFLTNGSFAFSGIKFYEEYMKLRGKEDAFKIIFGLRSL
GDLTDPILRQNQYGFQPGLWGSQIMPINVWFLNVTMYRIKPQYVNDYIAE
DIVKRLNKNSFSWILSSKQSVLINMNWLNLTRLCDEIRFPRCSWKYFINI
ADPSGMDYHLLKDVNPYLSTMTAIKEDNYMFLKSYFVPVTLTDCYPIQSI
DQMSAIYIYSVCFMYSEHWDSDSMRICPDPCKGYPCRYIRNADVNSCQKL
GIYKRDFSCACLRGYSWDVKSLSCLAENYCFTVCERKGTMKCNFSPNEGT
IECICKNGFMGFDCSVLNNACIFADSIQNFITGLEACNVDEGNNKCFPLL
GTGSYSCGCSPPFVADRNLPYDNCLAVMEQCANRLCVFGSCETSADGFRS
YCQCDLDFKGEECDVPRGQWSSWSNWTQCFPDCGTDSIHQRIRYCVGQID
DCIGHPEEVEKCDVGICFYERPPEDITYDIFWSKWLILTTITIGYLIFVV
LVSSILTLFRSQKSKADKKAASKIKKMNLAKSIRRIKMKYGLTLNAENVM
ETLEELWNPDADDDELKMNLKVINEILMKIQKKNPKVFQFVSERSEIAAL
ALSYNQ*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000208testis
PLANA:0002030early male germ cell
Vocabulary: INTERPRO
TermDefinition
IPR036383TSP1_rpt_sf
IPR000742EGF-like_dom
IPR013032EGF-like_CS
IPR000884TSP1_rpt
IPR007836Ribosomal_L41
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding
GO:0003735structural constituent of ribosome
Vocabulary: cellular component
TermDefinition
GO:0005840ribosome
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: biological process
TermDefinition
GO:0006412translation
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000742EGF-like domainSMARTSM00181egf_5coord: 380..414
e-value: 42.0
score: 8.9
coord: 279..315
e-value: 37.0
score: 9.5
coord: 235..275
e-value: 85.0
score: 5.4
coord: 336..375
e-value: 120.0
score: 3.7
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 276..315
score: 8.502
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 377..414
score: 7.147
IPR036383Thrombospondin type-1 (TSP1) repeat superfamilyGENE3DG3DSA:2.20.100.10coord: 417..467
e-value: 9.2E-6
score: 27.7
IPR036383Thrombospondin type-1 (TSP1) repeat superfamilySUPERFAMILYSSF82895TSP-1 type 1 repeatcoord: 416..467
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 303..314
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 402..413
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 303..314
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 417..468
score: 9.262
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.74
NoneNo IPR availableTMHMMTMhelixcoord: 5..27
NoneNo IPR availableTMHMMTMhelixcoord: 487..509