zinc finger CCHC domain-containing protein 7

Overview


Name	zinc finger CCHC domain-containing protein 7
Smed ID	SMED30017090
Length (bp)	2132

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of zinc finger CCHC domain-containing protein 7 (SMED30017090) t-SNE clustered cells

Violin plots show distribution of expression levels for zinc finger CCHC domain-containing protein 7 (SMED30017090) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of zinc finger CCHC domain-containing protein 7 (SMED30017090) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30017090

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 2

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication	Specimen	Lifecycle	Evidence
X1 cell	SMED30017090	SMESG000023321.1	SmedASXL_015936	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30017090	SMESG000023321.1	SmedASXL_015936	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Human
Match: ZCCHC7 (zinc finger CCHC-type containing 7 [Source:HGNC Symbol;Acc:HGNC:26209])

HSP 1 Score: 72.4034 bits (176), Expect = 1.271e-12
Identity = 56/188 (29.79%), Postives = 83/188 (44.15%), Query Frame = 2

Query:  554 INWAV-DYDIPT------SKSRFSSRYYENNNKSVCGICTKKGHTDEQCV--RTGPACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQCQRNRMNSHFVGPPPIMEIIKY--DEFDIYQK 1084
            INW++ D DI        +  R++ RYY  N   +C  C K+GH  + C   R    C  C + GH    C + +C  C        SC     +    C RC   GH    C ++WRQY  T  PGPP   K  S+  +   C +CA+ GH+  +C    +      P P+   I Y  D+++I ++
Sbjct:  208 INWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW-DKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCYHCAQKGHYGHECPEREV----YDPSPVSPFICYYDDKYEIQER 390

[Close]

Query:  554 INWAV-DYDIPT------SKSRFSSRYYENNNKSVCGICTKKGHTDEQCV--RTGPACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQCQRNRMNSHFVGPPPIMEIIKY--DEFDIYQK 1084
            INW++ D DI        +  R++ RYY  N   +C  C K+GH  + C   R    C  C + GH    C + +C  C        SC     +    C RC   GH    C ++WRQY  T  PGPP   K  S+  +   C +CA+ GH+  +C    +      P P+   I Y  D+++I ++
Sbjct:  208 INWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW-DKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCYHCAQKGHYGHECPEREV----YDPSPVSPFICYYDDKYEIQER 390

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Human
Match: CNBP (CCHC-type zinc finger nucleic acid binding protein [Source:HGNC Symbol;Acc:HGNC:13164])

HSP 1 Score: 48.9062 bits (115), Expect = 4.711e-6
Identity = 33/131 (25.19%), Postives = 52/131 (39.69%), Query Frame = 2

Query:  623 NNKSVCGICTKKGHTDEQCVRTGPACISCGKEGHNNKKCD------SIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQC 997
            +++ +C  C + GH  + C     AC +CG+ GH  K C          C+ C    H  + C    +     C  CG+ GH +  C  + + Y+     G       +    S V C  C +SGH   +C
Sbjct:   39 SDRDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADE---QKCYSCGEFGHIQKDCTKV-KCYRC----GETGHVAINCSKTSEVNCYRCGESGHLAREC 161

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Human
Match: CNBP (CCHC-type zinc finger nucleic acid binding protein [Source:HGNC Symbol;Acc:HGNC:13164])

HSP 1 Score: 48.521 bits (114), Expect = 7.185e-6
Identity = 25/72 (34.72%), Postives = 32/72 (44.44%), Query Frame = 2

Query:  638 CGICTKKGHTDEQCVRTGP-ACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGH 850
            C  C K GH    C       C SCG+ GH  K C  + C+ C    H   +C  T +   + C RCG+ GH
Sbjct:   93 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSE---VNCYRCGESGH 161

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Human
Match: CNBP (CCHC-type zinc finger nucleic acid binding protein [Source:HGNC Symbol;Acc:HGNC:13164])

HSP 1 Score: 48.521 bits (114), Expect = 7.580e-6
Identity = 25/72 (34.72%), Postives = 32/72 (44.44%), Query Frame = 2

Query:  638 CGICTKKGHTDEQCVRTGP-ACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGH 850
            C  C K GH    C       C SCG+ GH  K C  + C+ C    H   +C  T +   + C RCG+ GH
Sbjct:   91 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSE---VNCYRCGESGH 159

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Fly
Match: Zcchc7 (gene:FBgn0036668 transcript:FBtr0075330)

HSP 1 Score: 59.6918 bits (143), Expect = 9.129e-9
Identity = 37/125 (29.60%), Postives = 52/125 (41.60%), Query Frame = 2

Query:  638 CGICTKKGHTDEQCVRTGP--ACISCGKEGHNNKKCDSIICFTCFNIDH-RTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQCQR 1003
            C  C + GH   +C R      C  CG  GH   +C + ICF C +      + C        L C+ C  RGH    CPD WR+Y  T      +  +   +   +V C+ CA   H  E C++
Sbjct:  853 CSNCFEMGHVRSKCPRPRKPLVCFICGTMGHAEPRCPNAICFGCGSKQEIYVQQCNKCSFHSRLVCQLCKMRGHGVDHCPDKWRRYHSTTRSNTELDSRVQYR---SVQCSYCA-GRHSFENCRQ 973

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Zebrafish
Match: zcchc7 (zinc finger, CCHC domain containing 7 [Source:ZFIN;Acc:ZDB-GENE-030102-2])

HSP 1 Score: 83.1889 bits (204), Expect = 4.159e-16
Identity = 49/143 (34.27%), Postives = 65/143 (45.45%), Query Frame = 2

Query:  593 SRFSSRYYENNNKSV-CGICTKKGHTDEQC--VRTGPACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQCQRNRM 1012
            +R + RYY    KS+ C  C K GH  + C  ++  P C  CG  GH  + C +  C  C    H +  C   + F    C RCG  GH    CP +WRQY  T + GP          +    C NC++ GHF  QC + RM
Sbjct:  262 NRSTYRYY--TEKSITCRNCNKTGHLSKNCPTLKKVPCCSLCGLRGHLLRTCPNRHCSNCSLPGHTSDDCLE-RAFWYKRCHRCGMTGHFIDACPQIWRQYHLTTTAGPIRKSADPKACQKRAYCYNCSRKGHFGHQCSQRRM 401

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Zebrafish
Match: cnbpb (CCHC-type zinc finger, nucleic acid binding protein b [Source:ZFIN;Acc:ZDB-GENE-030131-7782])

HSP 1 Score: 56.225 bits (134), Expect = 7.275e-9
Identity = 38/141 (26.95%), Postives = 52/141 (36.88%), Query Frame = 2

Query:  638 CGICTKKGHTDEQCVRTGPACISCGKEGHNNKKCDSI------ICFTCFNIDHRTKSCQ--STKKFLSLG-------------CKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQC 997
            C  C + GH    C RT  AC +CG+ GH ++ C         +C+ C    H  + C   + +K  S G             C RCG+ GH  + C                          S V C NC KSGH  ++C
Sbjct:   38 CYRCGEPGHVARDCERTEDACYNCGRGGHISRDCKEPKKEREQVCYNCGKAGHMARDCDHANEQKCYSCGGFGHIQKGCEKVKCYRCGEIGHVAVQC-----------------------SKASEVNCYNCGKSGHVAKEC 155

HSP 2 Score: 49.2914 bits (116), Expect = 2.134e-6
Identity = 26/80 (32.50%), Postives = 33/80 (41.25%), Query Frame = 2

Query:  629 KSVCGICTKKGHTDEQCVRTGP-ACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELIC 865
            + VC  C K GH    C       C SCG  GH  K C+ + C+ C  I H    C    +   + C  CG+ GH    C
Sbjct:   79 EQVCYNCGKAGHMARDCDHANEQKCYSCGGFGHIQKGCEKVKCYRCGEIGHVAVQCSKASE---VNCYNCGKSGHVAKEC 155

[Close]

Query:  638 CGICTKKGHTDEQCVRTGPACISCGKEGHNNKKCDSI------ICFTCFNIDHRTKSCQ--STKKFLSLG-------------CKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQC 997
            C  C + GH    C RT  AC +CG+ GH ++ C         +C+ C    H  + C   + +K  S G             C RCG+ GH  + C                          S V C NC KSGH  ++C
Sbjct:   38 CYRCGEPGHVARDCERTEDACYNCGRGGHISRDCKEPKKEREQVCYNCGKAGHMARDCDHANEQKCYSCGGFGHIQKGCEKVKCYRCGEIGHVAVQC-----------------------SKASEVNCYNCGKSGHVAKEC 155

HSP 2 Score: 49.2914 bits (116), Expect = 2.134e-6
Identity = 26/80 (32.50%), Postives = 33/80 (41.25%), Query Frame = 2

Query:  629 KSVCGICTKKGHTDEQCVRTGP-ACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELIC 865
            + VC  C K GH    C       C SCG  GH  K C+ + C+ C  I H    C    +   + C  CG+ GH    C
Sbjct:   79 EQVCYNCGKAGHMARDCDHANEQKCYSCGGFGHIQKGCEKVKCYRCGEIGHVAVQCSKASE---VNCYNCGKSGHVAKEC 155

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Zebrafish
Match: cnbpa (CCHC-type zinc finger, nucleic acid binding protein a [Source:ZFIN;Acc:ZDB-GENE-030131-5045])

HSP 1 Score: 50.0618 bits (118), Expect = 1.213e-6
Identity = 33/126 (26.19%), Postives = 49/126 (38.89%), Query Frame = 2

Query:  638 CGICTKKGHTDEQCVRTGPACISCGKEGHNNKKCDSI------ICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQC 997
            C  C ++GH    C +T  AC +C + GH ++ C          C+ C    H  + C    +     C  CG  GH + +C D  + Y+     G            + V C NC K+GH    C
Sbjct:   40 CYRCGEQGHIARDCEQTEDACYNCHRSGHISRDCKEPKKEREQCCYNCGKAGHVARDCDHANE---QKCYSCGGFGHIQKLC-DKVKCYRC----GEIGHVAVQCSKATEVNCYNCGKTGHLARDC 157

[Close]

Query:  638 CGICTKKGHTDEQCVRTGPACISCGKEGHNNKKCDSI------ICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQC 997
            C  C ++GH    C +T  AC +C + GH ++ C          C+ C    H  + C    +     C  CG  GH + +C D  + Y+     G            + V C NC K+GH    C
Sbjct:   40 CYRCGEQGHIARDCEQTEDACYNCHRSGHISRDCKEPKKEREQCCYNCGKAGHVARDCDHANE---QKCYSCGGFGHIQKLC-DKVKCYRC----GEIGHVAVQCSKATEVNCYNCGKTGHLARDC 157

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Xenopus
Match: stk25 (serine/threonine kinase 25 [Source:Xenbase;Acc:XB-GENE-5860335])

HSP 1 Score: 102.449 bits (254), Expect = 4.272e-22
Identity = 60/166 (36.14%), Postives = 80/166 (48.19%), Query Frame = 2

Query:  596 RFSSRYYENNNKSVCGICTKKGHTDEQCV--RTGPACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQCQRNRMNSHFVGPPPIMEIIKYD-EFDIYQK 1084
            R S+RYY + +  VC  C K+GH  + C   +  PAC  CG+ GH    C +  C  CF   H  K C   + +    C RC   GH    CP++WRQY  T   GP    K  +  K  V C NCAK GH   +C+  RM+S     P    +  YD E DI+++
Sbjct:  252 RRSNRYYTDKD-VVCRNCDKRGHLSKNCPVPKKLPACCLCGERGHLQNSCPARYCLNCFLPGHFFKEC-IERAYWRKTCHRCSMTGHYADACPEIWRQYHLTNKAGPIKKPKSYTGQKDIVYCCNCAKKGHCNYECEERRMHSDNF--PTCQLVFTYDREHDIWKR 413

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Xenopus
Match: stk25 (serine/threonine kinase 25 [Source:Xenbase;Acc:XB-GENE-5860335])

HSP 1 Score: 77.411 bits (189), Expect = 3.588e-14
Identity = 55/167 (32.93%), Postives = 74/167 (44.31%), Query Frame = 2

Query:  596 RFSSRYYENNNKSVCGICTKKGHTDEQCV--RTGPACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFK-KFSSQNKSTVVCANCAKSGHFTEQCQRNRMNSHFVGPPPIMEIIKYD-EFDIYQK 1084
            R S+RYY + +  VC  C K+GH  + C   +  PAC  CG+ GH    C +  C  CF   H  K C   + +    C RC   GH             Y  +   PI K K  +  K  V C NCAK GH   +C+  RM+S     P    +  YD E DI+++
Sbjct:  252 RRSNRYYTDKD-VVCRNCDKRGHLSKNCPVPKKLPACCLCGERGHLQNSCPARYCLNCFLPGHFFKEC-IERAYWRKTCHRCSMTGH-------------YADNKAGPIKKPKSYTGQKDIVYCCNCAKKGHCNYECEERRMHSDNF--PTCQLVFTYDREHDIWKR 401

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Mouse
Match: Zcchc7 (zinc finger, CCHC domain containing 7 [Source:MGI Symbol;Acc:MGI:2442912])

HSP 1 Score: 84.3445 bits (207), Expect = 1.494e-16
Identity = 67/194 (34.54%), Postives = 89/194 (45.88%), Query Frame = 2

Query:  551 DINWAV-DYDIPT------SKSRFSSRYYENNNKSVCGICTKKGHTDEQC-----VRTGPACISCGKEGHNNKKCDSIICFTC---FNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQCQRNRMNSHFVGPPPIMEIIKYD-EFDIYQK 1084
            D+NW + D DI        S  R+++RYY  N    C  C K+GH  + C     VR   AC  C + GH    C +  C  C    + +HR     S +K     C RC   GH    CP++WRQY  T  PGPP   K  S   + V C NCA+ GH+  +C   RM +      P   I  YD ++DI Q+
Sbjct:  202 DVNWFISDKDIEAKIDNNRSSGRWNNRYYSVNKNVTCRNCDKRGHLSKNCPLPQKVR---ACCLCSERGHLQYGCPARYCLDCSLPMSSNHRCFERLSWRKR----CDRCDMIGHHADACPEIWRQYHLTTKPGPPKKPKTPSGQSALVYCYNCAQKGHYGHECTERRMFNQTFPTSPF--IYCYDGKYDIQQR 386

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Mouse
Match: Zcchc13 (zinc finger, CCHC domain containing 13 [Source:MGI Symbol;Acc:MGI:1922314])

HSP 1 Score: 54.299 bits (129), Expect = 4.544e-8
Identity = 28/78 (35.90%), Postives = 37/78 (47.44%), Query Frame = 2

Query:  638 CGICTKKGHTDEQCVRTGP-ACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICP 868
            C IC++ GH    C R     C +CG+ GH  K C  I C+ C    H   +C  T +   + C RCG+ GH    CP
Sbjct:   91 CYICSQPGHLARDCNRQEEQKCYTCGEFGHIQKDCTQIKCYRCGENGHMAVNCSKTSE---VSCYRCGESGHLARECP 165

HSP 2 Score: 49.6766 bits (117), Expect = 1.905e-6
Identity = 34/131 (25.95%), Postives = 50/131 (38.17%), Query Frame = 2

Query:  623 NNKSVCGICTKKGHTDEQCVRTGPACISCGKEGHNNKKCDSI------ICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQC 997
            N   VC  C + GH  + C      C +CG+ GH  K C          C+ C    H  + C   ++     C  CG+ GH +  C  + + Y+     G       +    S V C  C +SGH   +C
Sbjct:   42 NQSDVCYRCGETGHYAKDCDLLQDTCYNCGRRGHIAKDCTQAKREREQCCYICSQPGHLARDCNRQEE---QKCYTCGEFGHIQKDCTQI-KCYRC----GENGHMAVNCSKTSEVSCYRCGESGHLAREC 164

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Mouse
Match: Cnbp (cellular nucleic acid binding protein [Source:MGI Symbol;Acc:MGI:88431])

HSP 1 Score: 48.521 bits (114), Expect = 5.204e-6
Identity = 25/72 (34.72%), Postives = 32/72 (44.44%), Query Frame = 2

Query:  638 CGICTKKGHTDEQCVRTGP-ACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGH 850
            C  C K GH    C       C SCG+ GH  K C  + C+ C    H   +C  T +   + C RCG+ GH
Sbjct:   91 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSE---VNCYRCGESGH 159

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Mouse
Match: Cnbp (cellular nucleic acid binding protein [Source:MGI Symbol;Acc:MGI:88431])

HSP 1 Score: 48.1358 bits (113), Expect = 6.329e-6
Identity = 25/72 (34.72%), Postives = 32/72 (44.44%), Query Frame = 2

Query:  638 CGICTKKGHTDEQCVRTGP-ACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGH 850
            C  C K GH    C       C SCG+ GH  K C  + C+ C    H   +C  T +   + C RCG+ GH
Sbjct:   92 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSE---VNCYRCGESGH 160

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. UniProt/SwissProt
Match: sp|A1L2T6|ZCHC7_XENLA (Zinc finger CCHC domain-containing protein 7 OS=Xenopus laevis OX=8355 GN=zcchc7 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.132e-24
Identity = 68/176 (38.64%), Postives = 87/176 (49.43%), Query Frame = 2

Query:  596 RFSSRYYENNNKSVCGICTKKGHTDEQCV--RTGPACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQCQRNRMNSHFVGPPPIMEIIKYD-EFDIYQKAGIKYSTKIK 1114
            R S+RYY + N  VC  C K+GH  + C   +  PAC  CG+ GH    C S  C  CF   H  K C   + +    C RC   GH    CP++WRQY  T+  GP    K  S  K  V C NCAK GH   +C+  RMNS  +  P    +  YD E+DI +K   +  +KIK
Sbjct:  254 RRSNRYYTDKN-VVCRNCDKRGHLSKNCPVPKKLPACCLCGERGHYQNSCPSRYCLNCFLPGHFFKEC-IERAYWRKTCHRCSMPGHYADACPEIWRQYHLTIKAGPIKKPKSHSGQKDIVYCCNCAKKGHCIYECKERRMNSDKL--PTCQLVFSYDHEYDI-RKRNERTKSKIK 424

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. UniProt/SwissProt
Match: sp|B1WC15|ZCHC7_RAT (Zinc finger CCHC domain-containing protein 7 OS=Rattus norvegicus OX=10116 GN=Zcchc7 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.206e-17
Identity = 79/265 (29.81%), Postives = 110/265 (41.51%), Query Frame = 2

Query:  551 DINWAV-DYDIPT------SKSRFSSRYYENNNKSVCGICTKKGHTDEQC---VRTGPACISCGKEGHNNKKCDSIICFTC---FNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQCQRNRMNSHFVGPPPIMEIIKYDEFDIYQKAGIKYSTKIKPTLNEISSTSENEIPSFIENMDVTTIVKDSERNETDLSESEMKNSQFGDGFIMLSPIVKETKSE 1306
            D+NW + D DI        S  R+++RYY  N    C  C K+GH  + C    +  P C+ C + GH    C +  C  C    +  HR     S +K     C RC   GH    CP++WRQY  T  PGPP   K  S   + V C NCA+ GH+  +C   RM +      P +     D++DI Q+       +IK  L +I            +N D     K     ETD    + + S+F           KET+ E
Sbjct:  204 DVNWFISDKDIEAKIDNNRSSGRWNNRYYSVNKNVTCRNCDKRGHLSKNCPLPQKVRPCCL-CSERGHLQYGCPARYCLDCSLPMSSTHRCFERSSWRK----RCDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSALVYCYNCAQKGHYGHECTERRMFNQAFPTSPFIYCYD-DKYDIQQR-----DRRIKRKLKDIK-----------KNGDFPRQFKRPHGEETDRYHHDRRKSRFSGKRSRWPRESKETQKE 446

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. UniProt/SwissProt
Match: sp|B1AX39|ZCHC7_MOUSE (Zinc finger CCHC domain-containing protein 7 OS=Mus musculus OX=10090 GN=Zcchc7 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.045e-15
Identity = 67/194 (34.54%), Postives = 89/194 (45.88%), Query Frame = 2

Query:  551 DINWAV-DYDIPT------SKSRFSSRYYENNNKSVCGICTKKGHTDEQC-----VRTGPACISCGKEGHNNKKCDSIICFTC---FNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQCQRNRMNSHFVGPPPIMEIIKYD-EFDIYQK 1084
            D+NW + D DI        S  R+++RYY  N    C  C K+GH  + C     VR   AC  C + GH    C +  C  C    + +HR     S +K     C RC   GH    CP++WRQY  T  PGPP   K  S   + V C NCA+ GH+  +C   RM +      P   I  YD ++DI Q+
Sbjct:  202 DVNWFISDKDIEAKIDNNRSSGRWNNRYYSVNKNVTCRNCDKRGHLSKNCPLPQKVR---ACCLCSERGHLQYGCPARYCLDCSLPMSSNHRCFERLSWRKR----CDRCDMIGHHADACPEIWRQYHLTTKPGPPKKPKTPSGQSALVYCYNCAQKGHYGHECTERRMFNQTFPTSPF--IYCYDGKYDIQQR 386

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. UniProt/SwissProt
Match: sp|Q2KIN0|ZCHC7_BOVIN (Zinc finger CCHC domain-containing protein 7 OS=Bos taurus OX=9913 GN=ZCCHC7 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 6.624e-15
Identity = 74/243 (30.45%), Postives = 100/243 (41.15%), Query Frame = 2

Query:  356 NVDNVLCIGSSSDESDYKAIHSVLSSDTSSLMLNIVSVNPTITVPSNEQESFNTVEDRFFDVKSTDINWAV-DYDIPT------SKSRFSSRYYENNNKSVCGICTKKGHTDEQC---VRTGPACISCGKEGHNNKKCDSIICFTC---FNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQCQRNRM-NSHFVGPPPI 1042
            NV++ + +G   D+ D              ++LNIV            ++S N  ED        D+NW + D DI        S  R++ RYY  N    C  C K GH  + C    +  P C+ C + GH    C +  C  C    +  HR     S +K     C RC   GH    CP++WRQY  T  PGPP   K  S   + V C NC + GH+  +C   RM N  F   P I
Sbjct:  172 NVESWMLLGCEVDDKD------------DDILLNIVGC----------EKSVNEGED--------DVNWFISDKDIEAQIGNKRSSGRWTHRYYTANKNVTCRNCDKCGHLSKNCPFPQKVRPCCL-CSERGHLQYACPARFCLGCSLPMSSTHRCLERASWRKR----CDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSTLVYCYNCGQEGHYGHECTERRMFNQTFPTSPFI 379

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. UniProt/SwissProt
Match: sp|Q8N3Z6|ZCHC7_HUMAN (Zinc finger CCHC domain-containing protein 7 OS=Homo sapiens OX=9606 GN=ZCCHC7 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 6.106e-12
Identity = 56/188 (29.79%), Postives = 83/188 (44.15%), Query Frame = 2

Query:  554 INWAV-DYDIPT------SKSRFSSRYYENNNKSVCGICTKKGHTDEQCV--RTGPACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQCQRNRMNSHFVGPPPIMEIIKY--DEFDIYQK 1084
            INW++ D DI        +  R++ RYY  N   +C  C K+GH  + C   R    C  C + GH    C + +C  C        SC     +    C RC   GH    C ++WRQY  T  PGPP   K  S+  +   C +CA+ GH+  +C    +      P P+   I Y  D+++I ++
Sbjct:  208 INWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSW-DKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCYHCAQKGHYGHECPEREV----YDPSPVSPFICYYDDKYEIQER 390

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. TrEMBL
Match: A0A1S8XAC4 (Zinc knuckle (Fragment) OS=Opisthorchis viverrini OX=6198 GN=X801_00424 PE=4 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.159e-28
Identity = 68/197 (34.52%), Postives = 101/197 (51.27%), Query Frame = 2

Query:  560 WAVDYDIPTSKSRFSS---RYYENNNKSVCGICTKKGHTDEQCVRTGPACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPI---FKKFSSQNKSTVVCANCAKSGHFTEQCQRNRMNSHFVGPPPIMEIIKYDEFDIYQKAGIKYSTKIKPTLNEI 1132
            W ++ +   S SR  S   RY+ + + +VC  C K+GH   +C  +   CI CG EGH  + C ++ CF C    H  KSC    +     C+RCG +GH   +C +LWRQYK T S G P+    K  S +      C NC + GH  EQC+     S+F+GP P   ++ YD+ +I++K  ++   K +    EI
Sbjct:  179 WRINAEDRRSSSRTGSHDKRYFNDFHNAVCANCRKRGHFTFECRISDVVCIFCGIEGHMKENCKNMYCFACLAPGHTKKSCTLLSRLKQSVCERCGLQGHQSHLCTELWRQYKNTTSVGKPVPIPVKMLSHRG-----CCNCGRRGHTIEQCRCRPFRSNFIGPSPRRRVLVYDKKNIFKKKALRAKGKSEVPCGEI 370

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. TrEMBL
Match: A0A074ZCX2 (Uncharacterized protein OS=Opisthorchis viverrini OX=6198 GN=T265_10544 PE=4 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.189e-28
Identity = 68/197 (34.52%), Postives = 101/197 (51.27%), Query Frame = 2

Query:  560 WAVDYDIPTSKSRFSS---RYYENNNKSVCGICTKKGHTDEQCVRTGPACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPI---FKKFSSQNKSTVVCANCAKSGHFTEQCQRNRMNSHFVGPPPIMEIIKYDEFDIYQKAGIKYSTKIKPTLNEI 1132
            W ++ +   S SR  S   RY+ + + +VC  C K+GH   +C  +   CI CG EGH  + C ++ CF C    H  KSC    +     C+RCG +GH   +C +LWRQYK T S G P+    K  S +      C NC + GH  EQC+     S+F+GP P   ++ YD+ +I++K  ++   K +    EI
Sbjct:  179 WRINAEDRRSSSRTGSHDKRYFNDFHNAVCANCRKRGHFTFECRISDVVCIFCGIEGHMKENCKNMYCFACLAPGHTKKSCTLLSRLKQSVCERCGLQGHQSHLCTELWRQYKNTTSVGKPVPIPVKMLSHRG-----CCNCGRRGHTIEQCRCRPFRSNFIGPSPRRRVLVYDKKNIFKKKALRAKGKSEVPCGEI 370

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. TrEMBL
Match: A0A3R7FLY8 (Zinc finger CCHC domain-containing protein 7 OS=Clonorchis sinensis OX=79923 GN=zcchc7 PE=4 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.885e-28
Identity = 67/194 (34.54%), Postives = 99/194 (51.03%), Query Frame = 2

Query:  560 WAVDYDIPTSKSRFSS---RYYENNNKSVCGICTKKGHTDEQCVRTGPACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQCQRNRMNSHFVGPPPIMEIIKYDEFDIYQKAGIKYSTKIKPTLNEI 1132
            W ++ +   S SR  S   RY+ + + +VC  C K+GH   +C  +   CI CG EGH  + C +I CF C    H  KSC    +     C RCG +GH   +C +LWRQYK T S G P+     ++      C NC + GH  EQC+     S+F+GP P   ++ YD+ +I++K  ++   K +    EI
Sbjct:  212 WRINPEDRRSISRTGSHDKRYFNDFHNAVCANCRKRGHFTSECRASDVVCIFCGIEGHMKENCGNIYCFACLAPGHTKKSCTLLSRLKQSVCDRCGLQGHQSHLCTELWRQYKNTTSVGKPV--PIPAKMLGHRGCCNCGRRGHTIEQCRCRPFRSNFIGPSPRRRVLVYDKKNIFKKKALRAKGKSEFPGGEI 403

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. TrEMBL
Match: A0A4Z2CY00 (Zinc finger CCHC domain-containing protein OS=Schistosoma japonicum OX=6182 GN=EWB00_006517 PE=4 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.019e-26
Identity = 70/206 (33.98%), Postives = 103/206 (50.00%), Query Frame = 2

Query:  602 SSRYYENNNKSVCGICTKKGHTDEQCVRTGPACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQCQRNRMNSHFVGPPPIMEIIKYDEFDIYQKAGIKYSTKIKPTLNEISSTSENEIPSFIENMDVTTIVKDSERNET 1219
            S RY+   + S+C  C KK     +C      CI CG+EGH   +CD + CF C    H    C          C+RCGQ+GH+  +C +LWRQY+ T S G PI      ++K    C NC + GH  E C+   + SHF+GP P   ++ YD+ DIY+   +K        LN+I    +N+    +E +D   ++  SE ++T
Sbjct:  172 SVRYFSALDNSICPECGKKRQKSHRCC---ICCILCGEEGHEKSECDKLYCFACLAPGHTKYECHLLNNLKKSICERCGQQGHNSTLCTELWRQYRNTTSKGKPIRLYDVVKSKG---CCNCGRRGHTVEDCRCRPLKSHFLGPLPRRRVLVYDKKDIYRSIRLK--------LNKI-RRRKNKSKKIMEEVDNNCVIISSESDDT 362

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. TrEMBL
Match: A0A4S2KVB6 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_010707 PE=4 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.804e-26
Identity = 62/178 (34.83%), Postives = 94/178 (52.81%), Query Frame = 2

Query:  563 AVDYDIPTSKSRFSSRYYENNNKSVCGICTKKGHTDEQCVRTGPACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQCQRNRMNSHFVGPPPIMEIIKYDEFDIYQKAGIK 1096
            A D  I  ++S    RY+ + + +VC  C K+GH   +C  +   CI CG EGH  + C S+ CF C    H  KSC    +     C+RCG +GH   +C +LWRQYK T S G P+     ++      C NC + GH  +QC+     S+F+GP P   ++ YD+ +I++K  ++
Sbjct:  183 AEDRSISRTRSH-DKRYFNDFHNAVCANCRKRGHFTFECRTSDVVCIFCGIEGHMKENCKSMYCFACLAPGHTKKSCTLLSRLKQSVCERCGLQGHQSHLCTELWRQYKNTTSVGKPV--PIPAKMLGHRGCCNCGRRGHTIDQCRCRPFRSNFIGPLPRRRVLVYDKKNIFKKKALR 357

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Cavefish
Match: ENSAMXT00000049641.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02002305.1:133096:141172:1 gene:ENSAMXG00000031265.1 transcript:ENSAMXT00000049641.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 64.6994 bits (156), Expect = 8.984e-12
Identity = 32/89 (35.96%), Postives = 42/89 (47.19%), Query Frame = 2

Query:  608 RYYENNNKSVCGICTKKGHTDEQCVRTGPACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDL 874
            R  E  N  VC +C  +GH+  +C      C  C    H  K CD I C+ C  + HR K CQ+T+      C  CG +GHS   CP +
Sbjct:   58 RGKECQNTEVCNLCGTQGHSYFKCPSQTQRCYVCHSTEHQVKDCDVIKCWKCGELGHRGKECQNTEV-----CNLCGTQGHSYFKCPKI 141

HSP 2 Score: 53.1434 bits (126), Expect = 9.317e-8
Identity = 30/105 (28.57%), Postives = 45/105 (42.86%), Query Frame = 2

Query:  698 CISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQCQRNRM 1012
            C  C    H  K CD I C+ C  + HR K CQ+T+      C  CG +GHS   CP   ++     S       +   ++   + C  C + GH  ++CQ   +
Sbjct:   31 CYVCHSTEHQVKDCDVIKCWKCGELGHRGKECQNTEV-----CNLCGTQGHSYFKCPSQTQRCYVCHS------TEHQVKDCDVIKCWKCGELGHRGKECQNTEV 124

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Cavefish
Match: ENSAMXT00000005562.2 (cellular nucleic acid-binding protein [Source:NCBI gene;Acc:103027392])

HSP 1 Score: 56.6102 bits (135), Expect = 5.091e-9
Identity = 38/141 (26.95%), Postives = 52/141 (36.88%), Query Frame = 2

Query:  638 CGICTKKGHTDEQCVRTGPACISCGKEGHNNKKCD------SIICFTCFNIDHRTKSCQ--STKKFLSLG-------------CKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQC 997
            C  C + GH    C RT  AC +CG+ GH ++ C         +C+ C    H  + C   + +K  S G             C RCG+ GH  + C                          S V C NC KSGH  ++C
Sbjct:   38 CYRCGEPGHVARDCERTEDACYNCGRGGHISRDCKEPKKEREQVCYNCGKAGHVARDCDHANEQKCYSCGGFGHIQKGCEKVKCYRCGEIGHVAVQC-----------------------SKASEVNCYNCGKSGHLAKEC 155

HSP 2 Score: 49.2914 bits (116), Expect = 1.568e-6
Identity = 25/75 (33.33%), Postives = 32/75 (42.67%), Query Frame = 2

Query:  629 KSVCGICTKKGHTDEQCVRTGP-ACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGH 850
            + VC  C K GH    C       C SCG  GH  K C+ + C+ C  I H    C    +   + C  CG+ GH
Sbjct:   79 EQVCYNCGKAGHVARDCDHANEQKCYSCGGFGHIQKGCEKVKCYRCGEIGHVAVQCSKASE---VNCYNCGKSGH 150

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Cavefish
Match: cnbpa (cellular nucleic acid-binding protein-like [Source:NCBI gene;Acc:103024401])

HSP 1 Score: 47.7506 bits (112), Expect = 6.580e-6
Identity = 25/72 (34.72%), Postives = 30/72 (41.67%), Query Frame = 2

Query:  638 CGICTKKGHTDEQCVRTGP-ACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGH 850
            C  C K GH    C       C SCG  GH  K CD + C+ C  I H    C    +   + C  CG+ GH
Sbjct:   93 CYNCGKAGHVARDCDHANEQKCYSCGGFGHIQKLCDKVKCYRCGEIGHVAVQCSKASE---VNCYNCGKTGH 161

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Yeast
Match: AIR1 (Zinc knuckle protein; involved in nuclear RNA processing and degradation as a component of the TRAMP complex; stimulates the poly(A) polymerase activity of Pap2p in vitro; AIR1 has a paralog, AIR2, that arose from the whole genome duplication; although Air1p and Air2p are homologous TRAMP subunits, they have nonredundant roles in regulation of substrate specificity of the exosome [Source:SGD;Acc:S000001341])

HSP 1 Score: 56.9954 bits (136), Expect = 4.595e-9
Identity = 37/124 (29.84%), Postives = 49/124 (39.52%), Query Frame = 2

Query:  692 PACISCGKEGHNNKKCDSIICFTC-FNIDHRTKSC-----------------QSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQCQRNR 1009
            P C +C + GH  + C  +IC  C F  DH ++ C                 Q   K+  + C  C  + HS   CP +WR   Y L         F  Q   TV C NC  +GHF + C   R
Sbjct:   74 PKCNNCSQRGHLKRNCPHVICTYCGFMDDHYSQHCPKAIICTNCNANGHYKSQCPHKWKKVFCTLCNSKRHSRERCPSIWRS--YLLKTKDANQGDFDFQ---TVFCYNCGNAGHFGDDCAERR 192

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Yeast
Match: AIR2 (RNA-binding subunit of the TRAMP nuclear RNA surveillance complex; involved in nuclear RNA processing and degradation; involved in TRAMP complex assembly as a bridge between Mtr4p and Trf4p; stimulates the poly(A) polymerase activity of Pap2p in vitro; has 5 zinc knuckle motifs; AIR2 has a paralog, AIR1, that arose from the whole genome duplication; Air2p and Air1p have nonredundant roles in regulation of substrate specificity of the exosome [Source:SGD;Acc:S000002334])

HSP 1 Score: 55.0694 bits (131), Expect = 1.754e-8
Identity = 35/128 (27.34%), Postives = 53/128 (41.41%), Query Frame = 2

Query:  686 TGPACISCGKEGHNNKKCDSIICFTCFNI-DHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPG--------PPIFKKF---SSQNKS--------TVVCANCAKSGHFTEQCQRNR 1009
              P C +C + GH  K C  IIC  C    DH ++ C       ++ C +C + GH    CP  W++ + TL           P I++ +       K+        T+ C NC   GHF + C+  R
Sbjct:   59 AAPKCNNCSQRGHLKKDCPHIICSYCGATDDHYSRHCPK-----AIQCSKCDEVGHYRSQCPHKWKKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKEKR 181

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Nematostella
Match: EDO34570 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SP17])

HSP 1 Score: 47.7506 bits (112), Expect = 5.453e-7
Identity = 28/100 (28.00%), Postives = 36/100 (36.00%), Query Frame = 2

Query:  698 CISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQC 997
            C  CG  GH   +C ++ C  C  + H   +C    +     C RCG  GH    CP       Y    G PI     S       C  C  +GH   +C
Sbjct:    1 CFRCGAAGHVVARCPALACGYCHQVGHPISTCPVRGR-----CFRCGAAGHVVARCPAPAVPCGYCHQVGHPI-----STCPVRGRCFRCGAAGHVVARC 90

HSP 2 Score: 46.595 bits (109), Expect = 1.339e-6
Identity = 25/79 (31.65%), Postives = 32/79 (40.51%), Query Frame = 2

Query:  638 CGICTKKGHTDEQCVRTGPACISCGKEGHNNKKCDS--IICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICP 868
            CG C + GH    C   G  C  CG  GH   +C +  + C  C  + H   +C    +     C RCG  GH    CP
Sbjct:   19 CGYCHQVGHPISTCPVRG-RCFRCGAAGHVVARCPAPAVPCGYCHQVGHPISTCPVRGR-----CFRCGAAGHVVARCP 91

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Medaka
Match: ENSORLT00000027532.1 (zinc finger CCHC domain-containing protein 7 [Source:NCBI gene;Acc:105354880])

HSP 1 Score: 87.4261 bits (215), Expect = 1.027e-17
Identity = 54/163 (33.13%), Postives = 71/163 (43.56%), Query Frame = 2

Query:  539 VKSTDINWAV-DYDIPTSKSRFSSRYYENNNKSVCGICTKKGHTDEQCV--RTGPACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQ--NKSTVVCANCAKSGHFTEQCQRNRM 1012
            V S    W V D D          RY+     S C  C K GH  ++C   +    C+ CG +GH  K C    C  C    H    C+      +  C+RCG  GH    CPD WRQY  T+  G P+  +  ++   KS   C NC+K GH+  +C R RM
Sbjct:  142 VTSQSHTWLVSDKDKYGYDQSLFGRYFFPGRSSFCYRCFKSGHVAKRCSFDKKSSTCVLCGTQGHVQKNCPGRPCPDCGLPAHGLHPCR-IPPVWNQHCRRCGMIGHLSFTCPDTWRQYHRTVRSGVPLSSRPVARLSQKSCAHCYNCSKRGHYGYECARIRM 303

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Medaka
Match: ENSORLT00000032413.1 (zinc finger CCHC-type containing 7 [Source:NCBI gene;Acc:101170154])

HSP 1 Score: 65.0846 bits (157), Expect = 1.656e-10
Identity = 38/116 (32.76%), Postives = 53/116 (45.69%), Query Frame = 2

Query:  584 TSKSRFSSRYYENNNKSVCGICTKKGHTDEQCVRTG-PACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKF 928
            T++    +RYY   N   C  C K GH  + C       C  CG  GH   +C +  C  C +  H   SC S K +    C RC  +GH    CP++WRQY +T+S     F++ 
Sbjct:  209 TTRQFLQNRYYTGKNIH-CKNCNKTGHLSKNCPEPKLVPCFLCGAPGHLVIECPNKHCNNCGHPGHLFNSC-SEKPYWYKQCHRCSMKGHFLDACPEIWRQYHFTVSTPAHFFRRM 322

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Medaka
Match: cnbpa (CCHC-type zinc finger nucleic acid binding protein [Source:NCBI gene;Acc:101173222])

HSP 1 Score: 53.1434 bits (126), Expect = 9.680e-8
Identity = 34/126 (26.98%), Postives = 51/126 (40.48%), Query Frame = 2

Query:  638 CGICTKKGHTDEQCVRTGPACISCGKEGHNNKKCD------SIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQC 997
            C  C  +GH    C +T  AC +C + GH ++ C         +C+TC    H  + C    +     C  CG  GH + +C D  + Y+     G            S   C NC K+GH  ++C
Sbjct:   43 CYRCGDQGHMARDCDQTEDACYNCHRSGHISRDCKEPKKEREQLCYTCGKAGHMARDCDHANE---QKCYSCGGFGHIQKLC-DKVKCYRC----GEIGHVAVHCSKASETNCYNCGKAGHLAKEC 160

HSP 2 Score: 48.521 bits (114), Expect = 3.991e-6
Identity = 25/75 (33.33%), Postives = 31/75 (41.33%), Query Frame = 2

Query:  629 KSVCGICTKKGHTDEQCVRTGP-ACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGH 850
            + +C  C K GH    C       C SCG  GH  K CD + C+ C  I H    C    +     C  CG+ GH
Sbjct:   84 EQLCYTCGKAGHMARDCDHANEQKCYSCGGFGHIQKLCDKVKCYRCGEIGHVAVHCSKASE---TNCYNCGKAGH 155

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Medaka
Match: cnbpa (CCHC-type zinc finger nucleic acid binding protein [Source:NCBI gene;Acc:101173222])

HSP 1 Score: 48.1358 bits (113), Expect = 2.724e-6
Identity = 25/75 (33.33%), Postives = 31/75 (41.33%), Query Frame = 2

Query:  629 KSVCGICTKKGHTDEQCVRTGP-ACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGH 850
            + +C  C K GH    C       C SCG  GH  K CD + C+ C  I H    C    +     C  CG+ GH
Sbjct:   62 EQLCYTCGKAGHMARDCDHANEQKCYSCGGFGHIQKLCDKVKCYRCGEIGHVAVHCSKASE---TNCYNCGKAGH 133

[Close]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Planmine SMEST
Match: SMESG000023321.1 (SMESG000023321.1)

HSP 1 Score: 1142.49 bits (2954), Expect = 0.000e+0
Identity = 658/658 (100.00%), Postives = 658/658 (100.00%), Query Frame = 2

Query:   44 MVNSPNSWHDSDDIDTDLEQQAYSLLYYDDCPRIVKDASNLEEEKVTLAIXXXXXXXXXXXXXXXXXXDVAINLLXXXXXXXXXXXXXXXXXXXXQSVQIIKCSNVDNVLCIGSSSDESDYKAIHSVLSSDTSSLMLNIVSVNPTITVPSNEQESFNTVEDRFFDVKSTDINWAVDYDIPTSKSRFSSRYYENNNKSVCGICTKKGHTDEQCVRTGPACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQCQRNRMNSHFVGPPPIMEIIKYDEFDIYQKAGIKYSTKIKPTLNEISSTSENEIPSFIENMDVTTIVKDSERNETDLSESEMKNSQFGDGFIMLSPIVKETKSETQFKHHQPKMILINSSTPQSQNRLVAKVPTKLPGITTELLKKLFPDETSNLDKLPPYMRKKLRKKLKNFIDHGYLPGDSSMTQERMEFWLQEISTGRTLNYREKKKLLGSVSAALHSISDRVSSMEVMDCPMNGSAVDTVTNEANNLLSIPDLRKRKNRNSRIXXXXXXXXXXXXXXXXXXXXXXXXLTDNIKSRLRRTSVSDEQAEPXXXXXXXXXXXXXXXXXXXXXXEIISMNY 2017
            MVNSPNSWHDSDDIDTDLEQQAYSLLYYDDCPRIVKDASNLEEEKVTLAINSMSNSENNESKSISDNEDVAINLLNSSDSTIDSINTSDSDSDSSQSVQIIKCSNVDNVLCIGSSSDESDYKAIHSVLSSDTSSLMLNIVSVNPTITVPSNEQESFNTVEDRFFDVKSTDINWAVDYDIPTSKSRFSSRYYENNNKSVCGICTKKGHTDEQCVRTGPACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQCQRNRMNSHFVGPPPIMEIIKYDEFDIYQKAGIKYSTKIKPTLNEISSTSENEIPSFIENMDVTTIVKDSERNETDLSESEMKNSQFGDGFIMLSPIVKETKSETQFKHHQPKMILINSSTPQSQNRLVAKVPTKLPGITTELLKKLFPDETSNLDKLPPYMRKKLRKKLKNFIDHGYLPGDSSMTQERMEFWLQEISTGRTLNYREKKKLLGSVSAALHSISDRVSSMEVMDCPMNGSAVDTVTNEANNLLSIPDLRKRKNRNSRIEKNLKNSLKISKKEKKLARKSAESLTDNIKSRLRRTSVSDEQAEPKLNATKLKMTKLKKRKSKSVKNEIISMNY
Sbjct:    1 MVNSPNSWHDSDDIDTDLEQQAYSLLYYDDCPRIVKDASNLEEEKVTLAINSMSNSENNESKSISDNEDVAINLLNSSDSTIDSINTSDSDSDSSQSVQIIKCSNVDNVLCIGSSSDESDYKAIHSVLSSDTSSLMLNIVSVNPTITVPSNEQESFNTVEDRFFDVKSTDINWAVDYDIPTSKSRFSSRYYENNNKSVCGICTKKGHTDEQCVRTGPACISCGKEGHNNKKCDSIICFTCFNIDHRTKSCQSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNKSTVVCANCAKSGHFTEQCQRNRMNSHFVGPPPIMEIIKYDEFDIYQKAGIKYSTKIKPTLNEISSTSENEIPSFIENMDVTTIVKDSERNETDLSESEMKNSQFGDGFIMLSPIVKETKSETQFKHHQPKMILINSSTPQSQNRLVAKVPTKLPGITTELLKKLFPDETSNLDKLPPYMRKKLRKKLKNFIDHGYLPGDSSMTQERMEFWLQEISTGRTLNYREKKKLLGSVSAALHSISDRVSSMEVMDCPMNGSAVDTVTNEANNLLSIPDLRKRKNRNSRIEKNLKNSLKISKKEKKLARKSAESLTDNIKSRLRRTSVSDEQAEPKLNATKLKMTKLKKRKSKSVKNEIISMNY 658

The following BLAST results are available for this feature:

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Human
BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Celegans
BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Fly
BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Zebrafish
BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Xenopus
BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Mouse
BLAST of zinc finger CCHC domain-containing protein 7 vs. UniProt/SwissProt
BLAST of zinc finger CCHC domain-containing protein 7 vs. TrEMBL
BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Cavefish
BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Sea Lamprey
BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Yeast
BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Nematostella
BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Medaka
BLAST of zinc finger CCHC domain-containing protein 7 vs. Planmine SMEST

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ZCCHC7	1.271e-12	29.79	zinc finger CCHC-type containing 7 [Source:HGNC Sy...	[more]
ZCCHC7	1.271e-12	29.79	zinc finger CCHC-type containing 7 [Source:HGNC Sy...	[more]
CNBP	4.711e-6	25.19	CCHC-type zinc finger nucleic acid binding protein...	[more]
CNBP	7.185e-6	34.72	CCHC-type zinc finger nucleic acid binding protein...	[more]
CNBP	7.580e-6	34.72	CCHC-type zinc finger nucleic acid binding protein...	[more]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1


Match Name	E-value	Identity	Description
Zcchc7	9.129e-9	29.60	gene:FBgn0036668 transcript:FBtr0075330	[more]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
zcchc7	4.159e-16	34.27	zinc finger, CCHC domain containing 7 [Source:ZFIN...	[more]
cnbpb	7.275e-9	26.95	CCHC-type zinc finger, nucleic acid binding protei...	[more]
cnbpb	7.275e-9	26.95	CCHC-type zinc finger, nucleic acid binding protei...	[more]
cnbpa	1.213e-6	26.19	CCHC-type zinc finger, nucleic acid binding protei...	[more]
cnbpa	1.213e-6	26.19	CCHC-type zinc finger, nucleic acid binding protei...	[more]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2


Match Name	E-value	Identity	Description
stk25	4.272e-22	36.14	serine/threonine kinase 25 [Source:Xenbase;Acc:XB-...	[more]
stk25	3.588e-14	32.93	serine/threonine kinase 25 [Source:Xenbase;Acc:XB-...	[more]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4


Match Name	E-value	Identity	Description
Zcchc7	1.494e-16	34.54	zinc finger, CCHC domain containing 7 [Source:MGI ...	[more]
Zcchc13	4.544e-8	35.90	zinc finger, CCHC domain containing 13 [Source:MGI...	[more]
Cnbp	5.204e-6	34.72	cellular nucleic acid binding protein [Source:MGI ...	[more]
Cnbp	6.329e-6	34.72	cellular nucleic acid binding protein [Source:MGI ...	[more]

BLAST of zinc finger CCHC domain-containing protein 7 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|A1L2T6\|ZCHC7_XENLA	3.132e-24	38.64	Zinc finger CCHC domain-containing protein 7 OS=Xe...	[more]
sp\|B1WC15\|ZCHC7_RAT	4.206e-17	29.81	Zinc finger CCHC domain-containing protein 7 OS=Ra...	[more]
sp\|B1AX39\|ZCHC7_MOUSE	1.045e-15	34.54	Zinc finger CCHC domain-containing protein 7 OS=Mu...	[more]
sp\|Q2KIN0\|ZCHC7_BOVIN	6.624e-15	30.45	Zinc finger CCHC domain-containing protein 7 OS=Bo...	[more]
sp\|Q8N3Z6\|ZCHC7_HUMAN	6.106e-12	29.79	Zinc finger CCHC domain-containing protein 7 OS=Ho...	[more]

BLAST of zinc finger CCHC domain-containing protein 7 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A1S8XAC4	2.159e-28	34.52	Zinc knuckle (Fragment) OS=Opisthorchis viverrini ...	[more]
A0A074ZCX2	2.189e-28	34.52	Uncharacterized protein OS=Opisthorchis viverrini ...	[more]
A0A3R7FLY8	2.885e-28	34.54	Zinc finger CCHC domain-containing protein 7 OS=Cl...	[more]
A0A4Z2CY00	1.019e-26	33.98	Zinc finger CCHC domain-containing protein OS=Schi...	[more]
A0A4S2KVB6	1.804e-26	34.83	Uncharacterized protein OS=Opisthorchis felineus O...	[more]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3


Match Name	E-value	Identity	Description
ENSAMXT00000049641.1	8.984e-12	35.96	pep primary_assembly:Astyanax_mexicanus-2.0:APWO02...	[more]
ENSAMXT00000005562.2	5.091e-9	26.95	cellular nucleic acid-binding protein [Source:NCBI...	[more]
cnbpa	6.580e-6	34.72	cellular nucleic acid-binding protein-like [Source...	[more]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2


Match Name	E-value	Identity	Description
AIR1	4.595e-9	29.84	Zinc knuckle protein; involved in nuclear RNA proc...	[more]
AIR2	1.754e-8	27.34	RNA-binding subunit of the TRAMP nuclear RNA surve...	[more]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO34570	5.453e-7	28.00	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4


Match Name	E-value	Identity	Description
ENSORLT00000027532.1	1.027e-17	33.13	zinc finger CCHC domain-containing protein 7 [Sour...	[more]
ENSORLT00000032413.1	1.656e-10	32.76	zinc finger CCHC-type containing 7 [Source:NCBI ge...	[more]
cnbpa	9.680e-8	26.98	CCHC-type zinc finger nucleic acid binding protein...	[more]
cnbpa	2.724e-6	33.33	CCHC-type zinc finger nucleic acid binding protein...	[more]

BLAST of zinc finger CCHC domain-containing protein 7 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1


Match Name	E-value	Identity	Description
SMESG000023321.1	0.000e+0	100.00	SMESG000023321.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30017090 ID=SMED30017090|Name=zinc finger CCHC domain-containing protein 7|organism=Schmidtea mediterranea sexual|type=transcript|length=2132bp
ATAATATTATATAATTTTTTTTAATTAAATATTAAATTTTTAAATGGTAA
ATAGTCCTAATTCTTGGCATGATAGCGATGATATAGACACTGATTTGGAA
CAGCAAGCCTATAGTTTATTATATTATGACGATTGTCCAAGAATTGTCAA
AGATGCATCTAACTTAGAAGAAGAAAAAGTTACACTTGCAATAAACAGTA
TGAGCAATAGTGAAAATAATGAGTCCAAGTCAATTTCAGATAATGAAGAT
GTAGCTATTAATTTATTAAATTCAAGCGATTCAACGATTGATTCTATAAA
TACATCCGATTCCGATTCTGACAGTAGTCAAAGTGTCCAAATTATAAAAT
GCTCTAATGTTGATAATGTTTTATGCATCGGTTCAAGTTCTGATGAAAGT
GATTACAAAGCAATTCATAGTGTTTTAAGCTCAGATACTTCTTCGCTAAT
GCTAAATATTGTTTCTGTTAACCCGACTATTACGGTTCCTAGTAACGAAC
AAGAGAGCTTTAATACTGTTGAAGATCGGTTTTTCGATGTTAAATCAACG
GATATTAATTGGGCAGTTGATTATGATATTCCGACATCAAAAAGTAGATT
TAGTAGTAGATACTATGAAAATAATAATAAATCTGTTTGTGGAATTTGTA
CTAAAAAAGGCCACACTGATGAACAGTGTGTAAGAACTGGACCCGCGTGT
ATCTCATGTGGAAAAGAGGGTCATAATAATAAAAAGTGTGACTCAATCAT
TTGCTTTACCTGTTTTAACATTGACCATCGTACAAAATCTTGTCAGTCAA
CGAAAAAATTCCTCAGTTTAGGATGTAAACGATGTGGTCAACGTGGTCAT
TCAGAGCTGATTTGTCCTGACCTTTGGCGGCAATATAAATATACTCTTTC
TCCCGGGCCGCCGATTTTCAAGAAGTTTTCAAGTCAAAACAAGTCGACAG
TAGTTTGTGCTAATTGCGCCAAATCCGGCCATTTTACCGAGCAATGTCAG
CGAAATCGAATGAATTCTCATTTTGTTGGGCCTCCCCCAATTATGGAAAT
TATAAAATATGATGAATTCGATATTTATCAAAAAGCAGGAATCAAATATT
CAACTAAAATAAAGCCGACTCTCAATGAGATATCGTCGACTAGCGAAAAC
GAAATCCCATCATTCATAGAAAACATGGACGTTACAACTATTGTCAAGGA
TTCTGAGAGAAATGAGACCGATTTATCGGAAAGCGAAATGAAAAATTCTC
AATTTGGTGACGGATTCATTATGCTGAGCCCAATTGTCAAGGAAACGAAA
TCTGAGACCCAGTTTAAACATCATCAACCGAAAATGATTCTCATTAACAG
CTCGACTCCTCAATCCCAGAACCGACTAGTTGCTAAGGTACCGACAAAGC
TACCGGGAATCACCACAGAACTGCTGAAAAAATTGTTTCCGGACGAAACG
TCAAATCTTGACAAATTGCCGCCGTATATGAGGAAGAAGTTGAGAAAGAA
ATTGAAAAATTTCATAGATCATGGATATCTCCCGGGCGACTCCAGCATGA
CCCAGGAACGGATGGAGTTTTGGCTCCAGGAAATATCGACCGGCCGCACA
CTAAATTACCGGGAAAAGAAAAAACTGTTGGGCAGCGTGTCGGCTGCTCT
CCACTCAATTTCCGATCGGGTGTCATCGATGGAAGTGATGGACTGTCCAA
TGAACGGTTCCGCTGTCGATACCGTTACCAACGAGGCAAACAATTTATTA
TCAATTCCCGATCTGAGAAAACGGAAAAATCGAAATTCTCGGATTGAAAA
GAATCTGAAAAATTCATTGAAAATTTCGAAAAAAGAAAAGAAACTTGCGA
GAAAGTCAGCGGAATCTTTGACGGACAATATCAAAAGCCGACTGAGGAGA
ACCTCAGTCAGTGATGAGCAGGCGGAACCGAAATTGAACGCGACGAAATT
GAAAATGACAAAATTGAAAAAAAGAAAATCGAAATCAGTCAAAAATGAAA
TTATTTCTATGAATTATTGATTGAAATCATTTTTTCTGTAAATAGATTCA
AAAATATTGATTTTATGTTCTTGTTTTGAACGAGTTTTTGGCATATATCG
ATTTTGGCGGGTGGCGATCTTTTGCGTAATAT

protein sequence of SMED30017090-orf-1

>SMED30017090-orf-1 ID=SMED30017090-orf-1|Name=SMED30017090-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=659bp
MVNSPNSWHDSDDIDTDLEQQAYSLLYYDDCPRIVKDASNLEEEKVTLAI
NSMSNSENNESKSISDNEDVAINLLNSSDSTIDSINTSDSDSDSSQSVQI
IKCSNVDNVLCIGSSSDESDYKAIHSVLSSDTSSLMLNIVSVNPTITVPS
NEQESFNTVEDRFFDVKSTDINWAVDYDIPTSKSRFSSRYYENNNKSVCG
ICTKKGHTDEQCVRTGPACISCGKEGHNNKKCDSIICFTCFNIDHRTKSC
QSTKKFLSLGCKRCGQRGHSELICPDLWRQYKYTLSPGPPIFKKFSSQNK
STVVCANCAKSGHFTEQCQRNRMNSHFVGPPPIMEIIKYDEFDIYQKAGI
KYSTKIKPTLNEISSTSENEIPSFIENMDVTTIVKDSERNETDLSESEMK
NSQFGDGFIMLSPIVKETKSETQFKHHQPKMILINSSTPQSQNRLVAKVP
TKLPGITTELLKKLFPDETSNLDKLPPYMRKKLRKKLKNFIDHGYLPGDS
SMTQERMEFWLQEISTGRTLNYREKKKLLGSVSAALHSISDRVSSMEVMD
CPMNGSAVDTVTNEANNLLSIPDLRKRKNRNSRIEKNLKNSLKISKKEKK
LARKSAESLTDNIKSRLRRTSVSDEQAEPKLNATKLKMTKLKKRKSKSVK
NEIISMNY*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0002109	X1 cell
PLANA:0002111	X2 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR036875	Znf_CCHC_sf
IPR001878	Znf_CCHC

Vocabulary: **molecular function**
Term	Definition
GO:0008270	zinc ion binding
GO:0003676	nucleic acid binding

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 218..234 e-value: 0.12 score: 16.9 coord: 304..320 e-value: 0.31 score: 14.3 coord: 236..252 e-value: 1.5 score: 10.2 coord: 260..276 e-value: 0.45 score: 13.3 coord: 198..214 e-value: 18.0 score: 3.5
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 305..320 score: 8.532
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 219..232 score: 9.142
None	No IPR available	GENE3D	G3DSA:4.10.60.10		coord: 255..334 e-value: 6.5E-15 score: 57.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 596..625
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 596..631
None	No IPR available	PANTHER	PTHR46543	FAMILY NOT NAMED	coord: 51..651
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	coord: 189..234
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	coord: 234..276

Main menu

zinc finger CCHC domain-containing protein 7

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 2

Owlery

blazegraph-runner