SMED30017053
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30017053 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 17Note: Hover over icons to view figure legend
Homology
BLAST of SMED30017053 vs. TrEMBL
Match: A0A267F2Q6 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig013043g1 PE=4 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 9.356e-43 Identity = 234/833 (28.09%), Postives = 417/833 (50.06%), Query Frame = 3 Query: 582 SPRETLERKVVELDQLSSSVQKATIEHQQLCKELQVMQHQLRKNQAEVRLSERMALDNKEKVEFVHKELKSAESRRNQTLRHLDLVNEELALKRAKLKSFDLQMSREMASIRKLDQHGXXXXXXXXXLAERDELYQIVKRQEDIQNEKYELAKQLDLMRDDLYSEQERAARQIENLEDELECSLKKIKQLQFEKDELEAQLEHLRQH---LCKAEDQACKSSREVSEL-------RDEYQNRIKKKLDDYETDXXXXXXXXXXXXXXXXXXXANLKSHIEKLKSEMVIIERERKD-----LRELVSELEEQLRKSVQSRCQILEEQEYKVRQIQNDKEEAMQKQRKDLLNEQKMLLDEKDLQFGHEKNK----IQKQCNEEIXXXXXXXXXXXXEISELYEQQREIESELNCQLQ------REKAKFEGLLQKEKVNLIESSNKKKQNEINKILSDCEAKNHSLNNHIEQLTLTLKDRENELSNLKQDICNIRMENQKTMNNSILATRKIKDNVKQDTIKELKTRYEEKMDKELIKVKSEYDKKLNSKMSVILKEKAAIEDSEKKSK--QLLCKVVKTVVHEINGECCKMALLLNVHPRKVDHSKISDNFSKS---------DNIITQALANLEACGSETRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHELEAEKLKDISEIRENLLKEHLREINRLAKSPDIGLENLLREKEKEISKLLANRQMWXXXXXXXXX----XXFNQINQKKINELRNMLLKKESEIRQLKAIRGRSNSPTRRDVRASSALALEKTDLNFSSFPSN-VISSLQDNLDNLRKENNQLRHKLI 2957 +PRE+L+RKV ELD+L+ V+K E +++ EL +Q LRK+QAEVRLSE+++ DNK + + EL AE RR+ + LD +NEEL K+ +LK + M ++ L+ GI +EEIE ILAERDELYQ++++ ED + E+YEL K+L R+++ ++ A +++ LE+ELE SL KI + +++ L+ +L + + L + D +++R ++ R E R+K+++ +TD +I+R + E LK +E +SE+ RKD LRE ++ LE +L +++ ++ E E +++ + E ++ R+++ E + L + + E K Q++ I + + KD+++S L E + E+E Q RE + ++ EK + S+++ + E+ + + SL + + T+ E L + ++ R ++ + A + +++ +++ +E+++ E+ +++ E ++ +++ ++ E ++++ LL K+ + VV + N EC ++A +L V PRKV S N +T ALANLEACG E R EL + + ++L E E + L AEK ++ RE L+ EH+ EI ++AK+ + LE ++EKE E+ +L AN + WK AE+LA E+F + KKI +LRN + K+ E++ + A A A K PS+ V++ LQ+ + +LR+EN LR L Sbjct: 360 TPRESLDRKVHELDELNFQVRKTLQEKEKILAELHYVQDCLRKHQAEVRLSEKLSKDNKSRADDTKTELMLAEMRRDSAAKELDGLNEELHQKKEQLKRMEESCRSRMKELQDLESIGIAREEIENILAERDELYQLIRQNEDAEFERYELEKKLTQTREEMQTQASMAQQKVIALEEELEASLTKIAETTEDRNTLKMRLSDMDEKMRVLGSSLDDLTEANRRLARAKELAEKERAEEVERLKQRM---QTDLAQIQRRTEDEELAFKRQIQQLKESLEGAQSELT-----RKDEINCALREQIAHLEHELGHEAETKTHLISETERHLQKTGAEAERRLEAVRQEMRKEAEERLKRERATWQAEAAKEARTAQEKLQRTISELEFQLSSKDEDLSSLQEALKSKEAEAKAAEQDFRTELRE--RLRATVRSEKEKWEKESSERWRRELGALKEETSRTIESLQAESAKKSETIASLEAALERVSGELEAERESSKAAQRDRQTAVSRARESAREEAAREVRSVREQCESAAQEELQRERERARSAEAALSAARAELGESGRREAELAGLLEKLERAVVGQANAECARIAQVLGVTPRKVAAGSYRQQPSAEQPASPKEHRTNPVTAALANLEACGEELRTYTSELLEQSQKHRDRLAQEVKAREDDAAR----LGAEKTAELQAQRERLIGEHMAEIAKMAKAQNESLETSVKEKEAEVRELRANMKKWKSDTAERLAVRLQEEFRREFDKKIRDLRNAVRSKDQELQSYRK-------------EADPAQARPKNFEASGGDPSSAVVAQLQERVRSLREENLGLRKTLF 1165
BLAST of SMED30017053 vs. TrEMBL
Match: A0A267GKW5 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig013043g2 PE=4 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 9.520e-43 Identity = 234/833 (28.09%), Postives = 417/833 (50.06%), Query Frame = 3 Query: 582 SPRETLERKVVELDQLSSSVQKATIEHQQLCKELQVMQHQLRKNQAEVRLSERMALDNKEKVEFVHKELKSAESRRNQTLRHLDLVNEELALKRAKLKSFDLQMSREMASIRKLDQHGXXXXXXXXXLAERDELYQIVKRQEDIQNEKYELAKQLDLMRDDLYSEQERAARQIENLEDELECSLKKIKQLQFEKDELEAQLEHLRQH---LCKAEDQACKSSREVSEL-------RDEYQNRIKKKLDDYETDXXXXXXXXXXXXXXXXXXXANLKSHIEKLKSEMVIIERERKD-----LRELVSELEEQLRKSVQSRCQILEEQEYKVRQIQNDKEEAMQKQRKDLLNEQKMLLDEKDLQFGHEKNK----IQKQCNEEIXXXXXXXXXXXXEISELYEQQREIESELNCQLQ------REKAKFEGLLQKEKVNLIESSNKKKQNEINKILSDCEAKNHSLNNHIEQLTLTLKDRENELSNLKQDICNIRMENQKTMNNSILATRKIKDNVKQDTIKELKTRYEEKMDKELIKVKSEYDKKLNSKMSVILKEKAAIEDSEKKSK--QLLCKVVKTVVHEINGECCKMALLLNVHPRKVDHSKISDNFSKS---------DNIITQALANLEACGSETRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHELEAEKLKDISEIRENLLKEHLREINRLAKSPDIGLENLLREKEKEISKLLANRQMWXXXXXXXXX----XXFNQINQKKINELRNMLLKKESEIRQLKAIRGRSNSPTRRDVRASSALALEKTDLNFSSFPSN-VISSLQDNLDNLRKENNQLRHKLI 2957 +PRE+L+RKV ELD+L+ V+K E +++ EL +Q LRK+QAEVRLSE+++ DNK + + EL AE RR+ + LD +NEEL K+ +LK + M ++ L+ GI +EEIE ILAERDELYQ++++ ED + E+YEL K+L R+++ ++ A +++ LE+ELE SL KI + +++ L+ +L + + L + D +++R ++ R E R+K+++ +TD +I+R + E LK +E +SE+ RKD LRE ++ LE +L +++ ++ E E +++ + E + R+++ E + L + + E K +Q++ I + + KD+++S L E + E+E Q RE + ++ EK + S+++ + E+ + + SL + + T+ E L + ++ R ++ + A + +++ +++ +E+++ E+ +++ E ++ +++ ++ E ++++ LL K+ + VV + N EC ++A +L V PRKV S N +T ALANLEACG E R EL + + ++L E E + L AEK ++ RE L+ EH+ EI ++AK+ + LE ++EKE E+ +L AN + WK AE+LA E+F + KKI +LRN + K+ E++ + A A A K PS+ V++ LQ+ + +LR+EN LR L Sbjct: 360 TPRESLDRKVHELDELNFQVRKTLQEKEKILAELHYVQDCLRKHQAEVRLSEKLSKDNKSRADDTKTELMLAEMRRDSAAKELDGLNEELHQKKEQLKRMEESCRSRMKELQDLESIGIAREEIENILAERDELYQLIRQNEDAEFERYELEKKLTQTREEMQTQASMAQQKVIALEEELEASLTKIAETTEDRNTLKMRLSDMDEKMRVLGSSLDDLTEANRRLARAKELAEKERAEEVERLKQRM---QTDLAQIQRRTEDEELAFKRQIQQLKESLEGAQSELT-----RKDEINCALREQIAHLEHELGHEAETKTHLISETERHLQKTGAEAERRLDAVRQEMRKEAEERLARERATWQAEAAKEARTMQEKLQRTISELEFQLSSKDEDLSSLQEALKSKEAEAKAAEQDFRTELRE--RLRATVRSEKEKWEKESSERWRRELGALKEETSRTIESLQAESAKKSETIASLEAALERVSGELEAERESSKAAQRDRQTAVSRARESAREEAAREVRSVREQCESAAQEELQRERERARSAEAALSAARAELGESGRREAELAGLLEKLERAVVGQANAECARIAQVLGVTPRKVAAGSYRQQPSAEQPVSPKEHRTNPVTAALANLEACGEELRTYTSELLEQSQKHRDRLAQEVKAREDDAAR----LGAEKTAELQAQRERLIGEHMAEIAKMAKAQNESLETSVKEKEAEVRELRANMKKWKSDTAERLAVRLQEEFRREFDKKIRDLRNAVRSKDQELQSYRK-------------EADPAQARPKNFEASGGDPSSAVVAQLQERVRSLREENLGLRKTLF 1165
BLAST of SMED30017053 vs. TrEMBL
Match: A0A267F1P4 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig001939g1 PE=4 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.119e-19 Identity = 79/206 (38.35%), Postives = 132/206 (64.08%), Query Frame = 3 Query: 588 RETLERKVVELDQLSSSVQKATIEHQQLCKELQVMQHQLRKNQAEVRLSERMALDNKEKVEFVHKELKSAESRRNQTLRHLDLVNEELALKRAKLKSFDLQMSREMASIRKLDQHGXXXXXXXXXLAERDELYQIVKRQEDIQNEKYELAKQLDLMRDDLYSEQERAARQIENLEDELECSLKKIKQLQFEKDELEAQLEHLRQHL 1205 +ETL+RKV+ELD+L+ V+K E +++ EL +Q LR++QAEVRLSE++ DNK E EL A+++R+ T + ++ + EEL K+ +L+ + ++ + G+ KEEIE ILAERDELYQ+V++ ED + ++YEL K+L+ R+++ ++ + +++ LE+ELE SL KI + E++ L+ +L L L Sbjct: 331 KETLDRKVLELDELNQQVRKTLQEKEKIVGELHYVQDCLRRHQAEVRLSEKLCKDNKSLAEDTKTELMLAQTKRDSTAKEVEQLGEELNQKKEQLRRMEESCRARAKELQDFESIGVAKEEIENILAERDELYQLVRQNEDAEFQRYELEKKLNQTREEMQAQAYMSQQKVIALEEELEASLMKIAETSEERNSLKLRLGDLEDRL 536
BLAST of SMED30017053 vs. TrEMBL
Match: A0A267H479 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig030482g1 PE=4 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 4.666e-19 Identity = 78/202 (38.61%), Postives = 130/202 (64.36%), Query Frame = 3 Query: 588 RETLERKVVELDQLSSSVQKATIEHQQLCKELQVMQHQLRKNQAEVRLSERMALDNKEKVEFVHKELKSAESRRNQTLRHLDLVNEELALKRAKLKSFDLQMSREMASIRKLDQHGXXXXXXXXXLAERDELYQIVKRQEDIQNEKYELAKQLDLMRDDLYSEQERAARQIENLEDELECSLKKIKQLQFEKDELEAQLEHL 1193 +ETL+RKV+ELD+L+ V+K E +++ EL +Q LR++QAEVRLSE++ DNK E EL A+ +R+ T + ++ + EEL K+ +L+ + ++ + G+ KEEIE ILAERDELYQ+V++ ED + ++YEL K+L+ R+++ ++ + +++ LE+ELE SL KI + E++ L+ +L L Sbjct: 364 KETLDRKVLELDELNQQVRKTLQEKEKIVGELHYVQDCLRRHQAEVRLSEKLCKDNKSLAEDTKTELMLAQMKRDSTAKEVEQLGEELNQKKEQLRRMEESCRARAKELQDFESIGVAKEEIENILAERDELYQLVRQNEDAEFQRYELEKKLNQTREEMQAQAYMSQQKVIALEEELEASLMKIAETSEERNSLKLRLGDL 565
BLAST of SMED30017053 vs. TrEMBL
Match: A0A1I8IR99 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.227e-16 Identity = 112/412 (27.18%), Postives = 203/412 (49.27%), Query Frame = 3 Query: 1797 LQKEKVNLIESSNKKKQNEINKILSDCEAKNHSLNNHIEQLTLTLKDRENELSNLKQDICNIRMENQKTMNNSILATRKIKDNVKQDTIKELKTRYEEKMDKELIKVKSEYDKKLNSKMSVILKEKAAIEDSEKK---SKQLLCKVVKTVVHEINGECCKMALLLNVHPRKVDHSKISDN-----FSKSDNIITQALANLEACGSETRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHELEAEKLKDISEIRENLLKEHLREINRLAKSPDIGLENLLREKEKEISKLLANRQMWXXXXXXXXXXX----FNQINQKKINELRNMLLKKESEIRQLKAIRGRSNSPTRRDVRASSALAL-EKTDLNFSSFPSNVISSLQDNLDNLRKENNQLRHKLIGFESNDRKSKIE 2993 L+ EK ++++ Q E+ + S+ SL N ++ +K+ E EL L ++ R + + + + A ++K+ K++ KE++ E+++ + ++L + + +A E++ K+ S L + + +V++ N EC +++ +L V PR+V+ + + S + IT ALANLEAC E EL + + L L E EI ++RHEL EK ++ +RE L++EH++EI++LAK+ +E ++EKE E+ +L + Q WK + AE+LA + F + KKI ELRN + K+ E++ K + T RA + L E L+ S + ++ LQ+ + LR+EN LR + + R I+ Sbjct: 243 LRTEKEKWDRDNSERWQRELGSVRSEAARTIESLQNESKKRGDAVKELEEELHKLASELEREREKYRAAQRDRVTAINRLKEVAKEEAAKEVRA-VREQVEAAAAGEVEQAQERLRYAEETLAELRAEFEETAKREAESTAALERTERALVNQANAECLRISEMLGVTPRRVNQGQSGGDQSHRSLSSPGHPITAALANLEACSEELLTYCAELRDESRKLQNSLAQESKERSEEIESLRHELTKEKEAELQALRERLIQEHMQEISKLAKAQGESVEAAVKEKEAEVRELRSGMQKWKSETAERLAARLQDEFRREFDKKIRELRNAVRSKDQELQNFK-----KDIETMEQERAGAFKPLAEGGSLDAS---AKAMAQLQERVKALREENLSLRRQAMQGPGGGRVPTIQ 645
BLAST of SMED30017053 vs. Planmine SMEST
Match: SMESG000004885.1 (SMESG000004885.1) HSP 1 Score: 1394.41 bits (3608), Expect = 0.000e+0 Identity = 809/812 (99.63%), Postives = 811/812 (99.88%), Query Frame = 3 Query: 567 FMTQLSPRETLERKVVELDQLSSSVQKATIEHQQLCKELQVMQHQLRKNQAEVRLSERMALDNKEKVEFVHKELKSAESRRNQTLRHLDLVNEELALKRAKLKSFDLQMSREMASIRKLDQHGXXXXXXXXXLAERDELYQIVKRQEDIQNEKYELAKQLDLMRDDLYSEQERAARQIENLEDELECSLKKIKQLQFEKDELEAQLEHLRQHLCKAEDQACKSSREVSELRDEYQNRIKKKLDDYETDXXXXXXXXXXXXXXXXXXXANLKSHIEKLKSEMVIIERERKDLRELVSELEEQLRKSVQSRCQILEEQEYKVRQIQNDKEEAMQKQRKDLLNEQKMLLDEKDLQFGHEKNKIQKQCNEEIXXXXXXXXXXXXEISELYEQQREIESELNCQLQREKAKFEGLLQKEKVNLIESSNKKKQNEINKILSDCEAKNHSLNNHIEQLTLTLKDRENELSNLKQDICNIRMENQKTMNNSILATRKIKDNVKQDTIKELKTRYEEKMDKELIKVKSEYDKKLNSKMSVILKEKAAIEDSEKKSKQLLCKVVKTVVHEINGECCKMALLLNVHPRKVDHSKISDNFSKSDNIITQALANLEACGSETRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHELEAEKLKDISEIRENLLKEHLREINRLAKSPDIGLENLLREKEKEISKLLANRQMWXXXXXXXXXXXFNQINQKKINELRNMLLKKESEIRQLKAIRGRSNSPTRRDVRASSALALEKTDLNFSSFPSNVISSLQDNLDNLRKENNQLRHKLIGFESNDRKSKIEKEL 3002 FMTQLSPRETLERKVVELDQLSSSVQKATIEHQQLCKELQVMQHQLRKNQAEVRLSERMALDNKEKVEFVHKELKSAESRRNQTLRHLDLVNEELALKRAKLKSFDLQMSREMA+IRKLDQHGIEKEEIEKILAERDELYQIVKRQEDIQNEKYELAKQLDLMRDDLYSEQERAARQIENLEDELECSLKKIKQLQFEKDELEAQLEHLRQHLCKAEDQACKSSREVSELRDEYQNRIKKKLDDYETDKERIERELKKLEDEKSSDEANLKSHIEKLKSEMVIIERERKDLRELVSELEEQLRKSVQSRCQILEEQEYKVRQIQNDKEEA+QKQRKDLLNEQKMLLDEKDLQ GHEKNKIQKQCNEEIDRMMRDMQMKDKEISELYEQQREIESELNCQLQREKAKFEGLLQKEKVNLIESSNKKKQNEINKILSDCEAKNHSLNNHIEQLTLTLKDRENELSNLKQDICNIRMENQKTMNNSILATRKIKDNVKQDTIKELKTRYEEKMDKELIKVKSEYDKKLNSKMSVILKEKAAIEDSEKKSKQLLCKVVKTVVHEINGECCKMALLLNVHPRKVDHSKISDNFSKSDNIITQALANLEACGSETRNLLEELESKVKSLTEKLNNEEINLETEIRNIRHELEAEKLKDISEIRENLLKEHLREINRLAKSPDIGLENLLREKEKEISKLLANRQMWKEKAAEKLAEKFNQINQKKINELRNMLLKKESEIRQLKAIRGRSNSPTRRDVRASSALALEKTDLNFSSFPSNVISSLQDNLDNLRKENNQLRHKLIGFESNDRKSKIEKEL Sbjct: 22 FMTQLSPRETLERKVVELDQLSSSVQKATIEHQQLCKELQVMQHQLRKNQAEVRLSERMALDNKEKVEFVHKELKSAESRRNQTLRHLDLVNEELALKRAKLKSFDLQMSREMANIRKLDQHGIEKEEIEKILAERDELYQIVKRQEDIQNEKYELAKQLDLMRDDLYSEQERAARQIENLEDELECSLKKIKQLQFEKDELEAQLEHLRQHLCKAEDQACKSSREVSELRDEYQNRIKKKLDDYETDKERIERELKKLEDEKSSDEANLKSHIEKLKSEMVIIERERKDLRELVSELEEQLRKSVQSRCQILEEQEYKVRQIQNDKEEALQKQRKDLLNEQKMLLDEKDLQLGHEKNKIQKQCNEEIDRMMRDMQMKDKEISELYEQQREIESELNCQLQREKAKFEGLLQKEKVNLIESSNKKKQNEINKILSDCEAKNHSLNNHIEQLTLTLKDRENELSNLKQDICNIRMENQKTMNNSILATRKIKDNVKQDTIKELKTRYEEKMDKELIKVKSEYDKKLNSKMSVILKEKAAIEDSEKKSKQLLCKVVKTVVHEINGECCKMALLLNVHPRKVDHSKISDNFSKSDNIITQALANLEACGSETRNLLEELESKVKSLTEKLNNEEINLETEIRNIRHELEAEKLKDISEIRENLLKEHLREINRLAKSPDIGLENLLREKEKEISKLLANRQMWKEKAAEKLAEKFNQINQKKINELRNMLLKKESEIRQLKAIRGRSNSPTRRDVRASSALALEKTDLNFSSFPSNVISSLQDNLDNLRKENNQLRHKLIGFESNDRKSKIEKEL 833
BLAST of SMED30017053 vs. Planmine SMEST
Match: SMESG000004885.1 (SMESG000004885.1) HSP 1 Score: 1393.25 bits (3605), Expect = 0.000e+0 Identity = 809/812 (99.63%), Postives = 811/812 (99.88%), Query Frame = 3 Query: 567 FMTQLSPRETLERKVVELDQLSSSVQKATIEHQQLCKELQVMQHQLRKNQAEVRLSERMALDNKEKVEFVHKELKSAESRRNQTLRHLDLVNEELALKRAKLKSFDLQMSREMASIRKLDQHGXXXXXXXXXLAERDELYQIVKRQEDIQNEKYELAKQLDLMRDDLYSEQERAARQIENLEDELECSLKKIKQLQFEKDELEAQLEHLRQHLCKAEDQACKSSREVSELRDEYQNRIKKKLDDYETDXXXXXXXXXXXXXXXXXXXANLKSHIEKLKSEMVIIERERKDLRELVSELEEQLRKSVQSRCQILEEQEYKVRQIQNDKEEAMQKQRKDLLNEQKMLLDEKDLQFGHEKNKIQKQCNEEIXXXXXXXXXXXXEISELYEQQREIESELNCQLQREKAKFEGLLQKEKVNLIESSNKKKQNEINKILSDCEAKNHSLNNHIEQLTLTLKDRENELSNLKQDICNIRMENQKTMNNSILATRKIKDNVKQDTIKELKTRYEEKMDKELIKVKSEYDKKLNSKMSVILKEKAAIEDSEKKSKQLLCKVVKTVVHEINGECCKMALLLNVHPRKVDHSKISDNFSKSDNIITQALANLEACGSETRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHELEAEKLKDISEIRENLLKEHLREINRLAKSPDIGLENLLREKEKEISKLLANRQMWXXXXXXXXXXXFNQINQKKINELRNMLLKKESEIRQLKAIRGRSNSPTRRDVRASSALALEKTDLNFSSFPSNVISSLQDNLDNLRKENNQLRHKLIGFESNDRKSKIEKEL 3002 FMTQLSPRETLERKVVELDQLSSSVQKATIEHQQLCKELQVMQHQLRKNQAEVRLSERMALDNKEKVEFVHKELKSAESRRNQTLRHLDLVNEELALKRAKLKSFDLQMSREMA+IRKLDQHGIEKEEIEKILAERDELYQIVKRQEDIQNEKYELAKQLDLMRDDLYSEQERAARQIENLEDELECSLKKIKQLQFEKDELEAQLEHLRQHLCKAEDQACKSSREVSELRDEYQNRIKKKLDDYETDKERIERELKKLEDEKSSDEANLKSHIEKLKSEMVIIERERKDLRELVSELEEQLRKSVQSRCQILEEQEYKVRQIQNDKEEA+QKQRKDLLNEQKMLLDEKDLQ GHEKNKIQKQCNEEIDRMMRDMQMKDKEISELYEQQREIESELNCQLQREKAKFEGLLQKEKVNLIESSNKKKQNEINKILSDCEAKNHSLNNHIEQLTLTLKDRENELSNLKQDICNIRMENQKTMNNSILATRKIKDNVKQDTIKELKTRYEEKMDKELIKVKSEYDKKLNSKMSVILKEKAAIEDSEKKSKQLLCKVVKTVVHEINGECCKMALLLNVHPRKVDHSKISDNFSKSDNIITQALANLEACGSETRNLLEELESKVKSLTEKLNNEEINLETEIRNIRHELEAEKLKDISEIRENLLKEHLREINRLAKSPDIGLENLLREKEKEISKLLANRQMWKEKAAEKLAEKFNQINQKKINELRNMLLKKESEIRQLKAIRGRSNSPTRRDVRASSALALEKTDLNFSSFPSNVISSLQDNLDNLRKENNQLRHKLIGFESNDRKSKIEKEL Sbjct: 94 FMTQLSPRETLERKVVELDQLSSSVQKATIEHQQLCKELQVMQHQLRKNQAEVRLSERMALDNKEKVEFVHKELKSAESRRNQTLRHLDLVNEELALKRAKLKSFDLQMSREMANIRKLDQHGIEKEEIEKILAERDELYQIVKRQEDIQNEKYELAKQLDLMRDDLYSEQERAARQIENLEDELECSLKKIKQLQFEKDELEAQLEHLRQHLCKAEDQACKSSREVSELRDEYQNRIKKKLDDYETDKERIERELKKLEDEKSSDEANLKSHIEKLKSEMVIIERERKDLRELVSELEEQLRKSVQSRCQILEEQEYKVRQIQNDKEEALQKQRKDLLNEQKMLLDEKDLQLGHEKNKIQKQCNEEIDRMMRDMQMKDKEISELYEQQREIESELNCQLQREKAKFEGLLQKEKVNLIESSNKKKQNEINKILSDCEAKNHSLNNHIEQLTLTLKDRENELSNLKQDICNIRMENQKTMNNSILATRKIKDNVKQDTIKELKTRYEEKMDKELIKVKSEYDKKLNSKMSVILKEKAAIEDSEKKSKQLLCKVVKTVVHEINGECCKMALLLNVHPRKVDHSKISDNFSKSDNIITQALANLEACGSETRNLLEELESKVKSLTEKLNNEEINLETEIRNIRHELEAEKLKDISEIRENLLKEHLREINRLAKSPDIGLENLLREKEKEISKLLANRQMWKEKAAEKLAEKFNQINQKKINELRNMLLKKESEIRQLKAIRGRSNSPTRRDVRASSALALEKTDLNFSSFPSNVISSLQDNLDNLRKENNQLRHKLIGFESNDRKSKIEKEL 905 HSP 2 Score: 167.933 bits (424), Expect = 3.088e-42 Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 3 Query: 54 MSYTESILTEDYANKFNECMLTSPSKSRLHLQSYKSDIDQDSVFTEDIETKIRNQRDSFKYSNPNINSGDFDILRD 281 MSYTESILTEDYANKFNECMLTSPSKSRLHLQSYKSDIDQDSVFTEDIETKIRNQRDSFKYSNPNINSGDFDILR+ Sbjct: 1 MSYTESILTEDYANKFNECMLTSPSKSRLHLQSYKSDIDQDSVFTEDIETKIRNQRDSFKYSNPNINSGDFDILRE 76
BLAST of SMED30017053 vs. Planmine SMEST
Match: SMESG000004885.1 (SMESG000004885.1) HSP 1 Score: 1392.1 bits (3602), Expect = 0.000e+0 Identity = 809/812 (99.63%), Postives = 811/812 (99.88%), Query Frame = 3 Query: 567 FMTQLSPRETLERKVVELDQLSSSVQKATIEHQQLCKELQVMQHQLRKNQAEVRLSERMALDNKEKVEFVHKELKSAESRRNQTLRHLDLVNEELALKRAKLKSFDLQMSREMASIRKLDQHGXXXXXXXXXLAERDELYQIVKRQEDIQNEKYELAKQLDLMRDDLYSEQERAARQIENLEDELECSLKKIKQLQFEKDELEAQLEHLRQHLCKAEDQACKSSREVSELRDEYQNRIKKKLDDYETDXXXXXXXXXXXXXXXXXXXANLKSHIEKLKSEMVIIERERKDLRELVSELEEQLRKSVQSRCQILEEQEYKVRQIQNDKEEAMQKQRKDLLNEQKMLLDEKDLQFGHEKNKIQKQCNEEIXXXXXXXXXXXXEISELYEQQREIESELNCQLQREKAKFEGLLQKEKVNLIESSNKKKQNEINKILSDCEAKNHSLNNHIEQLTLTLKDRENELSNLKQDICNIRMENQKTMNNSILATRKIKDNVKQDTIKELKTRYEEKMDKELIKVKSEYDKKLNSKMSVILKEKAAIEDSEKKSKQLLCKVVKTVVHEINGECCKMALLLNVHPRKVDHSKISDNFSKSDNIITQALANLEACGSETRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHELEAEKLKDISEIRENLLKEHLREINRLAKSPDIGLENLLREKEKEISKLLANRQMWXXXXXXXXXXXFNQINQKKINELRNMLLKKESEIRQLKAIRGRSNSPTRRDVRASSALALEKTDLNFSSFPSNVISSLQDNLDNLRKENNQLRHKLIGFESNDRKSKIEKEL 3002 FMTQLSPRETLERKVVELDQLSSSVQKATIEHQQLCKELQVMQHQLRKNQAEVRLSERMALDNKEKVEFVHKELKSAESRRNQTLRHLDLVNEELALKRAKLKSFDLQMSREMA+IRKLDQHGIEKEEIEKILAERDELYQIVKRQEDIQNEKYELAKQLDLMRDDLYSEQERAARQIENLEDELECSLKKIKQLQFEKDELEAQLEHLRQHLCKAEDQACKSSREVSELRDEYQNRIKKKLDDYETDKERIERELKKLEDEKSSDEANLKSHIEKLKSEMVIIERERKDLRELVSELEEQLRKSVQSRCQILEEQEYKVRQIQNDKEEA+QKQRKDLLNEQKMLLDEKDLQ GHEKNKIQKQCNEEIDRMMRDMQMKDKEISELYEQQREIESELNCQLQREKAKFEGLLQKEKVNLIESSNKKKQNEINKILSDCEAKNHSLNNHIEQLTLTLKDRENELSNLKQDICNIRMENQKTMNNSILATRKIKDNVKQDTIKELKTRYEEKMDKELIKVKSEYDKKLNSKMSVILKEKAAIEDSEKKSKQLLCKVVKTVVHEINGECCKMALLLNVHPRKVDHSKISDNFSKSDNIITQALANLEACGSETRNLLEELESKVKSLTEKLNNEEINLETEIRNIRHELEAEKLKDISEIRENLLKEHLREINRLAKSPDIGLENLLREKEKEISKLLANRQMWKEKAAEKLAEKFNQINQKKINELRNMLLKKESEIRQLKAIRGRSNSPTRRDVRASSALALEKTDLNFSSFPSNVISSLQDNLDNLRKENNQLRHKLIGFESNDRKSKIEKEL Sbjct: 125 FMTQLSPRETLERKVVELDQLSSSVQKATIEHQQLCKELQVMQHQLRKNQAEVRLSERMALDNKEKVEFVHKELKSAESRRNQTLRHLDLVNEELALKRAKLKSFDLQMSREMANIRKLDQHGIEKEEIEKILAERDELYQIVKRQEDIQNEKYELAKQLDLMRDDLYSEQERAARQIENLEDELECSLKKIKQLQFEKDELEAQLEHLRQHLCKAEDQACKSSREVSELRDEYQNRIKKKLDDYETDKERIERELKKLEDEKSSDEANLKSHIEKLKSEMVIIERERKDLRELVSELEEQLRKSVQSRCQILEEQEYKVRQIQNDKEEALQKQRKDLLNEQKMLLDEKDLQLGHEKNKIQKQCNEEIDRMMRDMQMKDKEISELYEQQREIESELNCQLQREKAKFEGLLQKEKVNLIESSNKKKQNEINKILSDCEAKNHSLNNHIEQLTLTLKDRENELSNLKQDICNIRMENQKTMNNSILATRKIKDNVKQDTIKELKTRYEEKMDKELIKVKSEYDKKLNSKMSVILKEKAAIEDSEKKSKQLLCKVVKTVVHEINGECCKMALLLNVHPRKVDHSKISDNFSKSDNIITQALANLEACGSETRNLLEELESKVKSLTEKLNNEEINLETEIRNIRHELEAEKLKDISEIRENLLKEHLREINRLAKSPDIGLENLLREKEKEISKLLANRQMWKEKAAEKLAEKFNQINQKKINELRNMLLKKESEIRQLKAIRGRSNSPTRRDVRASSALALEKTDLNFSSFPSNVISSLQDNLDNLRKENNQLRHKLIGFESNDRKSKIEKEL 936
BLAST of SMED30017053 vs. Planmine SMEST
Match: SMESG000004885.1 (SMESG000004885.1) HSP 1 Score: 1373.61 bits (3554), Expect = 0.000e+0 Identity = 801/804 (99.63%), Postives = 803/804 (99.88%), Query Frame = 3 Query: 591 ETLERKVVELDQLSSSVQKATIEHQQLCKELQVMQHQLRKNQAEVRLSERMALDNKEKVEFVHKELKSAESRRNQTLRHLDLVNEELALKRAKLKSFDLQMSREMASIRKLDQHGXXXXXXXXXLAERDELYQIVKRQEDIQNEKYELAKQLDLMRDDLYSEQERAARQIENLEDELECSLKKIKQLQFEKDELEAQLEHLRQHLCKAEDQACKSSREVSELRDEYQNRIKKKLDDYETDXXXXXXXXXXXXXXXXXXXANLKSHIEKLKSEMVIIERERKDLRELVSELEEQLRKSVQSRCQILEEQEYKVRQIQNDKEEAMQKQRKDLLNEQKMLLDEKDLQFGHEKNKIQKQCNEEIXXXXXXXXXXXXEISELYEQQREIESELNCQLQREKAKFEGLLQKEKVNLIESSNKKKQNEINKILSDCEAKNHSLNNHIEQLTLTLKDRENELSNLKQDICNIRMENQKTMNNSILATRKIKDNVKQDTIKELKTRYEEKMDKELIKVKSEYDKKLNSKMSVILKEKAAIEDSEKKSKQLLCKVVKTVVHEINGECCKMALLLNVHPRKVDHSKISDNFSKSDNIITQALANLEACGSETRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHELEAEKLKDISEIRENLLKEHLREINRLAKSPDIGLENLLREKEKEISKLLANRQMWXXXXXXXXXXXFNQINQKKINELRNMLLKKESEIRQLKAIRGRSNSPTRRDVRASSALALEKTDLNFSSFPSNVISSLQDNLDNLRKENNQLRHKLIGFESNDRKSKIEKEL 3002 ETLERKVVELDQLSSSVQKATIEHQQLCKELQVMQHQLRKNQAEVRLSERMALDNKEKVEFVHKELKSAESRRNQTLRHLDLVNEELALKRAKLKSFDLQMSREMA+IRKLDQHGIEKEEIEKILAERDELYQIVKRQEDIQNEKYELAKQLDLMRDDLYSEQERAARQIENLEDELECSLKKIKQLQFEKDELEAQLEHLRQHLCKAEDQACKSSREVSELRDEYQNRIKKKLDDYETDKERIERELKKLEDEKSSDEANLKSHIEKLKSEMVIIERERKDLRELVSELEEQLRKSVQSRCQILEEQEYKVRQIQNDKEEA+QKQRKDLLNEQKMLLDEKDLQ GHEKNKIQKQCNEEIDRMMRDMQMKDKEISELYEQQREIESELNCQLQREKAKFEGLLQKEKVNLIESSNKKKQNEINKILSDCEAKNHSLNNHIEQLTLTLKDRENELSNLKQDICNIRMENQKTMNNSILATRKIKDNVKQDTIKELKTRYEEKMDKELIKVKSEYDKKLNSKMSVILKEKAAIEDSEKKSKQLLCKVVKTVVHEINGECCKMALLLNVHPRKVDHSKISDNFSKSDNIITQALANLEACGSETRNLLEELESKVKSLTEKLNNEEINLETEIRNIRHELEAEKLKDISEIRENLLKEHLREINRLAKSPDIGLENLLREKEKEISKLLANRQMWKEKAAEKLAEKFNQINQKKINELRNMLLKKESEIRQLKAIRGRSNSPTRRDVRASSALALEKTDLNFSSFPSNVISSLQDNLDNLRKENNQLRHKLIGFESNDRKSKIEKEL Sbjct: 92 ETLERKVVELDQLSSSVQKATIEHQQLCKELQVMQHQLRKNQAEVRLSERMALDNKEKVEFVHKELKSAESRRNQTLRHLDLVNEELALKRAKLKSFDLQMSREMANIRKLDQHGIEKEEIEKILAERDELYQIVKRQEDIQNEKYELAKQLDLMRDDLYSEQERAARQIENLEDELECSLKKIKQLQFEKDELEAQLEHLRQHLCKAEDQACKSSREVSELRDEYQNRIKKKLDDYETDKERIERELKKLEDEKSSDEANLKSHIEKLKSEMVIIERERKDLRELVSELEEQLRKSVQSRCQILEEQEYKVRQIQNDKEEALQKQRKDLLNEQKMLLDEKDLQLGHEKNKIQKQCNEEIDRMMRDMQMKDKEISELYEQQREIESELNCQLQREKAKFEGLLQKEKVNLIESSNKKKQNEINKILSDCEAKNHSLNNHIEQLTLTLKDRENELSNLKQDICNIRMENQKTMNNSILATRKIKDNVKQDTIKELKTRYEEKMDKELIKVKSEYDKKLNSKMSVILKEKAAIEDSEKKSKQLLCKVVKTVVHEINGECCKMALLLNVHPRKVDHSKISDNFSKSDNIITQALANLEACGSETRNLLEELESKVKSLTEKLNNEEINLETEIRNIRHELEAEKLKDISEIRENLLKEHLREINRLAKSPDIGLENLLREKEKEISKLLANRQMWKEKAAEKLAEKFNQINQKKINELRNMLLKKESEIRQLKAIRGRSNSPTRRDVRASSALALEKTDLNFSSFPSNVISSLQDNLDNLRKENNQLRHKLIGFESNDRKSKIEKEL 895 HSP 2 Score: 204.142 bits (518), Expect = 6.378e-54 Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 3 Query: 54 MSYTESILTEDYANKFNECMLTSPSKSRLHLQSYKSDIDQDSVFTEDIETKIRNQRDSFKYSNPNINSGDFDILRDNQIKPLEFEDKDAFN--VERKYQEI 350 MSYTESILTEDYANKFNECMLTSPSKSRLHLQSYKSDIDQDSVFTEDIETKIRNQRDSFKYSNPNINSGDFDILRDNQIKPLEFEDKDAFN +ERK E+ Sbjct: 1 MSYTESILTEDYANKFNECMLTSPSKSRLHLQSYKSDIDQDSVFTEDIETKIRNQRDSFKYSNPNINSGDFDILRDNQIKPLEFEDKDAFNETLERKVVEL 101
BLAST of SMED30017053 vs. Planmine SMEST
Match: SMESG000013596.1 (SMESG000013596.1) HSP 1 Score: 94.3597 bits (233), Expect = 2.652e-19 Identity = 127/466 (27.25%), Postives = 239/466 (51.29%), Query Frame = 3 Query: 54 MSYT---ESILTEDYANKFNECMLTSPS------------KSRLHLQSYKSDIDQDSVFTEDIETKIRNQRDSFKYSNPNIN----------SGDFDILRDNQIKPL------EFEDKDAFNVERKYQEILKKRRNRTANLIQPYQNPVS---------QFQENYRHQDDQSTVYE-----DYSMEIRNKKNEIQMDXXXXXXXXXXXXXXXXXXXFMTQLSPRETLERKVVELDQLSSSVQKATIEHQQLCKELQVMQHQLRKNQAEVRLSERM--ALDNKEKVEFVHKELKSAESRRNQT-LRHLDLVNEELALKRAKLKSFDLQMSREMASIRKLDQHGXXXXXXXXXLAERDELYQIVKRQEDIQNEKYELAKQLDLMRDDLYSEQERAARQIENLEDELECSLKKIKQLQFEKDELEAQLEHLRQHLCKAEDQACKSSREVSELRDEYQ--NRIKKKLDDY 1301 M +T ESILTED+A+KF E +LT S K +L+ QS+ D +SV T+ + ++N + NPN + S + D+ + ++P+ +F K AF+ + + E R +PY+N ++ Q+ N++ +D+Q + E D + EI+ K IQ ++ ER+R S E + ++PRE LE KV ELD L+ +++A + +++ EL ++++L+ E+ ++ N +++ H + + + + Q+ L HL N +L K+++L+ + + + + I L+ G+ K+EI++++ ER++LY+I++ E+ N++YEL KQL ++DL +E +R+ +I NLE+EL+ KKI +LQ +K++ +L + ++ + +D ++ D YQ N +K +LD Y Sbjct: 1 MDFTSDCESILTEDFASKFKE-ILTEDSRVFTDKSKLQSIKPQLNKQSFYRIQDIESVTTDVYDDHLQNIFNGTNKCNPNSDRSFPAESCNTSINVDMGNISNVQPMRRDIMNKFLAKYAFDENQIFNEKGTGER-------KPYENNITYPKESSKNIQYNSNFKLKDEQRKLKENAMRIDLANEIKAKSLRIQNEIHEERKRKLESIQEKV---ILNDVTPREKLELKVRELDHLTDRMRQARSDRERITAELDDLKNKLKVRPIEIHKNKTWTDGSKNMDEIRAFHNYVPNNKIQATQSQLSHL---NCQLNEKKSQLRDLENVIRQRLKEIEDLECIGLSKQEIKQVIEERNDLYEILRLSEEHGNDRYELEKQLTEAKEDLSTEYKRSREKIMNLEEELDICFKKITELQEDKEKQSRELYITKDNMQRLQD----------DINDLYQERNELKSQLDKY 442 The following BLAST results are available for this feature:
BLAST of SMED30017053 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30017053 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30017053 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30017053 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30017053 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30017053 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30017053 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30017053 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30017053 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30017053 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30017053 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30017053 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30017053 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30017053 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30017053 ID=SMED30017053|Name=SMED30017053|organism=Schmidtea mediterranea sexual|type=transcript|length=3112bpback to top protein sequence of SMED30017053-orf-1 >SMED30017053-orf-1 ID=SMED30017053-orf-1|Name=SMED30017053-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=993bp MSYTESILTEDYANKFNECMLTSPSKSRLHLQSYKSDIDQDSVFTEDIETback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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