Folate_rec domain-containing protein

Overview
NameFolate_rec domain-containing protein
Smed IDSMED30017009
Length (bp)811
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Folate_rec domain-containing protein (SMED30017009) t-SNE clustered cells

Violin plots show distribution of expression levels for Folate_rec domain-containing protein (SMED30017009) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Folate_rec domain-containing protein (SMED30017009) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Folate_rec domain-containing protein (SMED30017009) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30017009

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parapharyngeal regionSMED30017009SMESG000047698.1 dd_Smed_v4_15072_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30017009SMESG000047698.1 dd_Smed_v4_15072_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Folate_rec domain-containing protein vs. TrEMBL
Match: C3YRH8 (Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_75612 PE=4 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.231e-42
Identity = 70/162 (43.21%), Postives = 107/162 (66.05%), Query Frame = 3 
Query:  192 KNPKGNVCTYFASNRYSEPESSLINCTWFRKDACCRRTEVTSVFTGMFALHKATDKCKYMMNYLMCYFCSPYQSQWYRNNKTVVCLSFCQNLFDNCKTAMYKGIKLGSKFKSGEKFCEAQNFQTLNSEMHCYGYDPTVFGSNY-----RNGINCLLIIISIV 662
            ++ + NVCTY+   RYSEP+ +L NCTW+  + CCRRTEVTSV + M+ L  AT KC+ ++NY+MCYFCSP Q  WY +N+  +C  FC+ ++  C +A Y+G+ + S ++SG  FC+AQ +  ++ E+ C+ YDP VFG        R GI  L +++ ++
Sbjct:   25 ESHQNNVCTYYYDTRYSEPQGNLANCTWYSNNCCCRRTEVTSVASSMYPLFGATQKCRNVLNYMMCYFCSPEQYLWYYDNRVHICGRFCELVYRECGSASYEGVTIASAYESGWDFCQAQTYLVVD-ELPCFDYDPKVFGGGGIVKGNREGIVGLALLVLML 185
[Close]
BLAST of Folate_rec domain-containing protein vs. TrEMBL
Match: A0A1S3JP76 (riboflavin-binding protein OS=Lingula unguis OX=7574 GN=LOC106174923 PE=4 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 9.577e-42
Identity = 68/151 (45.03%), Postives = 104/151 (68.87%), Query Frame = 3 
Query:  213 CTYFASNRYSEPESSLINCTWFRKDACCRRTEVTSVFTGMFALHKATDKCKYMMNYLMCYFCSPYQSQWYRNNKTVVCLSFCQNLFDNCKTAMYKGIKLGSKFKSGEKFCEAQNFQTLNSEMHCYGYDPTVF--GSNYRNGINCLLIIISI 659
            CTY+       PE+ L+NC+W+  +ACC+RTEVTSVF GM+ L +A+ KC+  +NYLMCYFCSP Q  WY+ ++  VC  FC ++   CKTAM+ G K+G+ +K+G++ CE Q F+ + S  +C+ +DPTVF  G + ++ +  LL+++ I
Sbjct:   36 CTYYGGTHVPSPENGLVNCSWYSTNACCKRTEVTSVFGGMYKLARASKKCQNRVNYLMCYFCSPEQHLWYQ-DQLHVCADFCDSIHFYCKTAMFSGEKIGTSYKNGKEICEGQKFKYVESNTNCFKFDPTVFDTGCSLKSSLITLLLVLGI 185
[Close]
BLAST of Folate_rec domain-containing protein vs. TrEMBL
Match: A0A433SXA2 (Folate_rec domain-containing protein OS=Elysia chlorotica OX=188477 GN=EGW08_018293 PE=4 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.655e-41
Identity = 74/181 (40.88%), Postives = 109/181 (60.22%), Query Frame = 3 
Query:  117 ILAIQVSFVISPNENFNEINFHSIAKNPKGNVCTYFASNRYSEPESSLINCTWFRKDACCRRTEVTSVFTGMFALHKATDKCKYMMNYLMCYFCSPYQSQWYRNNKTVVCLSFCQNLFDNCKTAMYKGIKLGSKFKSGEKFCEAQNFQTLNSEMHCYGYDPTVFGSNYRNGINCLLIIISI 659
            IL+  V+      E   E N        +G  C+YF + R    E  L+NCTW++  ACC+RTEVTSVF  M  L+ AT  C+  +NYLMC+FCSP Q ++Y++NK  VCL +C++L++ CK A +  + +G  + +G  FCEAQNF+ + +   C+ +DP VFGS+ +     +LII  I
Sbjct:   19 ILSHGVTLASDDGETDAEGNPLLFEAEDEGQKCSYFYNERSPTNEGGLVNCTWYKTKACCKRTEVTSVFAAMDPLYGATKLCRNYINYLMCFFCSPDQGKFYKSNKVNVCLDYCESLYEECKNAGFSNMLIGEAYANGTSFCEAQNFEVVEN-ADCFKFDPNVFGSSVKMVPLSILIIFMI 198
[Close]
BLAST of Folate_rec domain-containing protein vs. TrEMBL
Match: A7RPJ5 (Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g239793 PE=4 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.945e-41
Identity = 66/139 (47.48%), Postives = 99/139 (71.22%), Query Frame = 3 
Query:  201 KGNVCTYFASNRYSEPESSLINCTWFRKDACCRRTEVTSVFTGMFALHKATDKCKYMMNYLMCYFCSPYQSQWYRNNKTVVCLSFCQNLFDNCKTAMYKGIKLGSKFKSGEKFCEAQNFQTLNS-EMHCYGYDPTVFGS 614
            + + CTY+ S R  E   SL NCTWFR+ +CCR TEVTSVF GM AL++A+  C+  MNYLMCYFCSP Q +WY+N++  VC S C  +++ CK + ++G ++G+++ +G++FCEAQ F  +NS +  C+ +D  +FG+
Sbjct:   29 RASQCTYYGSGRVPEEAYSLSNCTWFRERSCCRHTEVTSVFKGMMALNEASQDCRNHMNYLMCYFCSPEQERWYKNSRLHVCESLCDAVYEKCKDSSFQGKEIGAEYSNGKEFCEAQFFHVVNSKDQECFDFDSGLFGT 167
[Close]
BLAST of Folate_rec domain-containing protein vs. TrEMBL
Match: A0A1I8HSL7 (Folate_rec domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig017771g3 PE=4 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.836e-40
Identity = 63/133 (47.37%), Postives = 91/133 (68.42%), Query Frame = 3 
Query:  213 CTYFASNRYSEPESSLINCTWFRKDACCRRTEVTSVFTGMFA-LHKATDKCKYMMNYLMCYFCSPYQSQWYRNNKTVVCLSFCQNLFDNCKTAMYKGIKLGSKFKSGEKFCEAQNFQTLNSEMHCYGYDPTVF 608
            CT+FA  RYS PESSL+NC W+ ++ACC+R EVTSVF+ + + L   + +C  M+ YL+CYFCSP Q  W+R+NK  VC SFC +++ +C++A+  G++ G  FK+GE FC   NF      + C+ +DPT F
Sbjct:   48 CTFFAGTRYSVPESSLVNCYWYNRNACCKRIEVTSVFSSLLSKLEGQSRRCYDMLRYLLCYFCSPEQHFWFRDNKVFVCKSFCDDIYSHCRSAVMNGLEFGKAFKNGEDFCRGNNFAVQEDNVACFAFDPTQF 180
[Close]
BLAST of Folate_rec domain-containing protein vs. Ensembl Nematostella
Match: EDO46522 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RPJ5])

HSP 1 Score: 149.828 bits (377), Expect = 5.456e-45
Identity = 66/139 (47.48%), Postives = 99/139 (71.22%), Query Frame = 3 
Query:  201 KGNVCTYFASNRYSEPESSLINCTWFRKDACCRRTEVTSVFTGMFALHKATDKCKYMMNYLMCYFCSPYQSQWYRNNKTVVCLSFCQNLFDNCKTAMYKGIKLGSKFKSGEKFCEAQNFQTLNS-EMHCYGYDPTVFGS 614
            + + CTY+ S R  E   SL NCTWFR+ +CCR TEVTSVF GM AL++A+  C+  MNYLMCYFCSP Q +WY+N++  VC S C  +++ CK + ++G ++G+++ +G++FCEAQ F  +NS +  C+ +D  +FG+
Sbjct:   29 RASQCTYYGSGRVPEEAYSLSNCTWFRERSCCRHTEVTSVFKGMMALNEASQDCRNHMNYLMCYFCSPEQERWYKNSRLHVCESLCDAVYEKCKDSSFQGKEIGAEYSNGKEFCEAQFFHVVNSKDQECFDFDSGLFGT 167
[Close]
BLAST of Folate_rec domain-containing protein vs. Ensembl Nematostella
Match: EDO27250 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T9S3])

HSP 1 Score: 113.235 bits (282), Expect = 7.067e-31
Identity = 55/152 (36.18%), Postives = 91/152 (59.87%), Query Frame = 3 
Query:  207 NVCTYFASNRYSEPESSLINCTWFRKDACCRRTEVTSVFTGMFALHKATDKCKYMMNYLMCYFCSPYQSQWYRNNKTVVCLSFCQNLFDNCKTAMYKGIKLGSKFKSGEKFCEAQNFQTLNSE-MHCYGYDPTVFGSNYRNGINCLLIIISI 659
            N C YF +NR   P+ +L NCTW++++ACC   E+ S+   +  L  A ++C    NYLMCY C+PYQ+ +Y+N +  VC  FC  +F +C  A  KG ++ S +KSGE+FCE++ F   + +  +C+    ++ G+     I  L ++++I
Sbjct:   39 NYCPYF-NNRAPSPQPNLRNCTWYKENACCLPHELDSILEAIAPLTGANNRCLRAFNYLMCYVCAPYQNMFYKNERLTVCRDFCDTIFQSCGDAFLKGSRISSAYKSGEEFCESRKFIVADGKSKNCFTSIQSISGA-VGVKIRLLTVVVTI 188
[Close]
BLAST of Folate_rec domain-containing protein vs. Ensembl Nematostella
Match: EDO36987 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SH49])

HSP 1 Score: 100.138 bits (248), Expect = 2.018e-24
Identity = 46/131 (35.11%), Postives = 75/131 (57.25%), Query Frame = 3 
Query:  213 CTYFASNRYSEPESSLINCTWFRKDACCRRTEVTSVFTGMFALHKATDKCKYMMNYLMCYFCSPYQSQWYRNNKTVVCLSFCQNLFDNCKTAMYKGIKLGSKFKSGEKFCEAQNFQT--LNSEMHCYGYDP 599
            C YF  NR    + +L NCTW+ +++CC  +E+   F  +  + KA + C   +NYL CY C+P Q+ ++R +   VC  FC  ++  CK A  KG+ +G  + +G +FCE + F+    NS+  C+ +DP
Sbjct:  215 CPYF-KNRGPSRQDNLRNCTWYTENSCCHDSEIEFAFAQLTPIPKAGESCVKQLNYLYCYICAPNQNTFFRRSTLTVCEEFCNRIYSACKKAYLKGMMIGDMYSNGREFCEGRRFEVSDKNSKQGCFDFDP 344
[Close]
BLAST of Folate_rec domain-containing protein vs. Planmine SMEST
Match: SMESG000047698.1 (SMESG000047698.1)

HSP 1 Score: 414.846 bits (1065), Expect = 5.888e-149
Identity = 200/201 (99.50%), Postives = 201/201 (100.00%), Query Frame = 3 
Query:   87 MQLNAYILANILAIQVSFVISPNENFNEINFHSIAKNPKGNVCTYFASNRYSEPESSLINCTWFRKDACCRRTEVTSVFTGMFALHKATDKCKYMMNYLMCYFCSPYQSQWYRNNKTVVCLSFCQNLFDNCKTAMYKGIKLGSKFKSGEKFCEAQNFQTLNSEMHCYGYDPTVFGSNYRNGINCLLIIISIVYNCCDLFIY 689
            MQLNAYILANILAI+VSFVISPNENFNEINFHSIAKNPKGNVCTYFASNRYSEPESSLINCTWFRKDACCRRTEVTSVFTGMFALHKATDKCKYMMNYLMCYFCSPYQSQWYRNNKTVVCLSFCQNLFDNCKTAMYKGIKLGSKFKSGEKFCEAQNFQTLNSEMHCYGYDPTVFGSNYRNGINCLLIIISIVYNCCDLFIY
Sbjct:    1 MQLNAYILANILAIRVSFVISPNENFNEINFHSIAKNPKGNVCTYFASNRYSEPESSLINCTWFRKDACCRRTEVTSVFTGMFALHKATDKCKYMMNYLMCYFCSPYQSQWYRNNKTVVCLSFCQNLFDNCKTAMYKGIKLGSKFKSGEKFCEAQNFQTLNSEMHCYGYDPTVFGSNYRNGINCLLIIISIVYNCCDLFIY 201
[Close]
BLAST of Folate_rec domain-containing protein vs. Planmine SMEST
Match: SMESG000047698.1 (SMESG000047698.1)

HSP 1 Score: 180.259 bits (456), Expect = 1.108e-57
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 3 
Query:  429 NKTVVCLSFCQNLFDNCKTAMYKGIKLGSKFKSGEKFCEAQNFQTLNSEMHCYGYDPTVFGSNYRNGINCLLIIISIVYNCCDLFIY 689
            +KTVVCLSFCQNLFDNCKTAMYKGIKLGSKFKSGEKFCEAQNFQTLNSEMHCYGYDPTVFGSNYRNGINCLLIIISIVYNCCDLFIY
Sbjct:   27 SKTVVCLSFCQNLFDNCKTAMYKGIKLGSKFKSGEKFCEAQNFQTLNSEMHCYGYDPTVFGSNYRNGINCLLIIISIVYNCCDLFIY 113

HSP 2 Score: 49.6766 bits (117), Expect = 1.115e-7
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 2 
Query:  359 MQIYDELPYVLFLQSISISMVSKQ 430
            MQIYDELPYVLFLQSISISMVSKQ
Sbjct:    1 MQIYDELPYVLFLQSISISMVSKQ 24
The following BLAST results are available for this feature:
BLAST of Folate_rec domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Folate_rec domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Folate_rec domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Folate_rec domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Folate_rec domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Folate_rec domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Folate_rec domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Folate_rec domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
C3YRH82.231e-4243.21Uncharacterized protein OS=Branchiostoma floridae ... [more]
A0A1S3JP769.577e-4245.03riboflavin-binding protein OS=Lingula unguis OX=75... [more]
A0A433SXA23.655e-4140.88Folate_rec domain-containing protein OS=Elysia chl... [more]
A7RPJ53.945e-4147.48Predicted protein OS=Nematostella vectensis OX=453... [more]
A0A1I8HSL73.836e-4047.37Folate_rec domain-containing protein OS=Macrostomu... [more]
back to top
BLAST of Folate_rec domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Folate_rec domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Folate_rec domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Folate_rec domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 3
Match NameE-valueIdentityDescription
EDO465225.456e-4547.48Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO272507.067e-3136.18Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO369872.018e-2435.11Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of Folate_rec domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Folate_rec domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000047698.15.888e-14999.50SMESG000047698.1[more]
SMESG000047698.11.108e-5798.85SMESG000047698.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30017009 ID=SMED30017009|Name=Folate_rec domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=811bp
TAAATTAAATAAAACTGAAAATATATTTCATATAATAAATTATTAACTAA
TTAGTTATAATTAATTATCGTAAATAAATTGTGAATATGCAATTAAATGC
ATACATATTGGCAAATATTTTGGCAATTCAAGTCTCGTTTGTAATTTCGC
CAAACGAAAATTTTAATGAAATAAATTTTCATTCAATAGCAAAAAATCCT
AAAGGAAATGTTTGTACTTATTTTGCTTCCAATAGGTATTCCGAACCTGA
AAGTAGTTTAATAAATTGCACCTGGTTCCGAAAAGATGCTTGCTGTAGAC
GGACAGAAGTAACGTCTGTTTTCACTGGAATGTTTGCGTTACATAAAGCC
ACTGATAAATGCAAATATATGATGAATTACCTTATGTGTTATTTTTGCAG
TCCATATCAATCTCAATGGTATCGAAACAATAAAACTGTCGTATGCTTAT
CTTTTTGTCAGAACTTGTTTGATAATTGTAAAACTGCCATGTATAAAGGA
ATTAAATTGGGCAGTAAATTTAAATCTGGAGAAAAGTTTTGCGAGGCTCA
AAATTTCCAAACTCTCAATTCAGAAATGCATTGTTATGGTTACGATCCGA
CTGTTTTTGGATCAAATTATCGCAATGGAATCAACTGTTTATTAATTATT
ATATCAATCGTTTATAATTGTTGCGATTTATTTATTTATTAATTACTTAA
AAATGTGTAATTTTAGATAGTTTATTTGACTGTTAGTTCATATGTTGTTT
ATAAATCTTTTACCCAATGCATTTATTGGAGGGAATTAGCTATTGATTTT
TTATTTTCCAA
back to top

protein sequence of SMED30017009-orf-1

>SMED30017009-orf-1 ID=SMED30017009-orf-1|Name=SMED30017009-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=202bp
MQLNAYILANILAIQVSFVISPNENFNEINFHSIAKNPKGNVCTYFASNR
YSEPESSLINCTWFRKDACCRRTEVTSVFTGMFALHKATDKCKYMMNYLM
CYFCSPYQSQWYRNNKTVVCLSFCQNLFDNCKTAMYKGIKLGSKFKSGEK
FCEAQNFQTLNSEMHCYGYDPTVFGSNYRNGINCLLIIISIVYNCCDLFI
Y*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0003117parapharyngeal cell
Vocabulary: INTERPRO
TermDefinition
IPR004269Folate_rcpt
IPR018143Folate_rcpt-like
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018143Folate receptor-likePFAMPF03024Folate_reccoord: 48..155
e-value: 1.5E-14
score: 54.3
IPR004269Folate receptorPANTHERPTHR10517FOLATE RECEPTORcoord: 26..190
NoneNo IPR availablePANTHERPTHR10517:SF16coord: 26..190