SMED30017008

Overview
NameSMED30017008
Smed IDSMED30017008
Length (bp)580
Neoblast Clusters

Zeng et. al., 2018




 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30017008

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
neoblastSMED30017008 AY067447smed_ncbi_20200123PMID:21566185
Wagner et al., 2011
whole organism asexual adult fluorescence in situ hybridization evidence
neoblastSMED30017008 H.39.11esmed_ncbi_20200123PMID:21566185
Wagner et al., 2011
whole organism asexual adult fluorescence in situ hybridization evidence
Category 1 cellSMED30017008 H.39.11esmed_ncbi_20200123PMID:18786419
Eisenhoffer et al., 2008
whole organism asexual adult cDNA to DNA expression microarray evidence
Category 1 cellSMED30017008 H.39.11esmed_ncbi_20200123PMID:18786419
Eisenhoffer et al., 2008
whole organism asexual adult colorimetric in situ hybridization evidence
Note: Hover over icons to view figure legend
Alignments
SMED30017008 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.036403:1436..2000 -2095
v31.036428:1268..1831 -2078
Homology
BLAST of SMED30017008 vs. Ensembl Human
Match: RRM2B (ribonucleotide reductase regulatory TP53 inducible subunit M2B [Source:HGNC Symbol;Acc:HGNC:17296])

HSP 1 Score: 47.7506 bits (112), Expect = 1.047e-6
Identity = 26/57 (45.61%), Postives = 31/57 (54.39%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN        E VA R L   G  K +  +NP DFM+ I ++GKTNFF KR  E
Sbjct:   62 LIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTNFFEKRVSE 118          
BLAST of SMED30017008 vs. Ensembl Human
Match: RRM2 (ribonucleotide reductase regulatory subunit M2 [Source:HGNC Symbol;Acc:HGNC:10452])

HSP 1 Score: 48.9062 bits (115), Expect = 1.515e-6
Identity = 26/57 (45.61%), Postives = 32/57 (56.14%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN        E VA R +   G  K +  +NP DFM+ I ++GKTNFF KR GE
Sbjct:  312 LIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFMENISLEGKTNFFEKRVGE 368          
BLAST of SMED30017008 vs. Ensembl Human
Match: RRM2 (ribonucleotide reductase regulatory subunit M2 [Source:HGNC Symbol;Acc:HGNC:10452])

HSP 1 Score: 48.9062 bits (115), Expect = 1.515e-6
Identity = 26/57 (45.61%), Postives = 32/57 (56.14%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN        E VA R +   G  K +  +NP DFM+ I ++GKTNFF KR GE
Sbjct:  312 LIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFMENISLEGKTNFFEKRVGE 368          
BLAST of SMED30017008 vs. Ensembl Human
Match: RRM2 (ribonucleotide reductase regulatory subunit M2 [Source:HGNC Symbol;Acc:HGNC:10452])

HSP 1 Score: 48.521 bits (114), Expect = 2.038e-6
Identity = 26/57 (45.61%), Postives = 32/57 (56.14%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN        E VA R +   G  K +  +NP DFM+ I ++GKTNFF KR GE
Sbjct:  372 LIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFMENISLEGKTNFFEKRVGE 428          
BLAST of SMED30017008 vs. Ensembl Human
Match: RRM2 (ribonucleotide reductase regulatory subunit M2 [Source:HGNC Symbol;Acc:HGNC:10452])

HSP 1 Score: 48.521 bits (114), Expect = 2.038e-6
Identity = 26/57 (45.61%), Postives = 32/57 (56.14%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN        E VA R +   G  K +  +NP DFM+ I ++GKTNFF KR GE
Sbjct:  372 LIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFMENISLEGKTNFFEKRVGE 428          
BLAST of SMED30017008 vs. Ensembl Celegans
Match: rnr-2 (Ribonucleoside-diphosphate reductase small chain [Source:UniProtKB/Swiss-Prot;Acc:P42170])

HSP 1 Score: 59.6918 bits (143), Expect = 1.147e-10
Identity = 33/73 (45.21%), Postives = 39/73 (53.42%), Query Frame = -3
Query:  333 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGENS---MSSGEGQPQFD 542
            + GMN        E VA   L   GCDK + +KNP DFM+ I IDGKTNFF KR  E     +   E + QFD
Sbjct:  304 MIGMNCRLMSQYIEFVADHLLVELGCDKLYKSKNPFDFMENISIDGKTNFFEKRVSEYQRPGVMVNEAERQFD 376          
BLAST of SMED30017008 vs. Ensembl Celegans
Match: F19G12.2 (pep chromosome:WBcel235:X:1427774:1430871:1 gene:WBGene00017610.1 transcript:F19G12.2.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F19G12.2)

HSP 1 Score: 51.9878 bits (123), Expect = 6.377e-8
Identity = 33/73 (45.21%), Postives = 37/73 (50.68%), Query Frame = -3
Query:  333 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE---NSMSSGEGQPQFD 542
            L GMN        E VA   L   G  K +NTKNP DFM+ I I+GKTNFF KR  E     M   E +  FD
Sbjct:  591 LIGMNQHMMCKYVEFVADLLLEELGYSKRYNTKNPFDFMENISIEGKTNFFEKRVSEYQRPEMMVDESEKVFD 663          
BLAST of SMED30017008 vs. Ensembl Fly
Match: RnrS (gene:FBgn0011704 transcript:FBtr0088046)

HSP 1 Score: 55.8398 bits (133), Expect = 3.063e-9
Identity = 29/57 (50.88%), Postives = 35/57 (61.40%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN +      E VA R L   G  K +NTKNP +FM+ I +DGKTNFF K+ GE
Sbjct:  316 LIGMNCDLMSQYIEFVADRLLVELGVGKIYNTKNPFNFMEMISLDGKTNFFEKKVGE 372          
BLAST of SMED30017008 vs. Ensembl Zebrafish
Match: rrm2 (ribonucleotide reductase M2 polypeptide [Source:NCBI gene;Acc:30733])

HSP 1 Score: 53.5286 bits (127), Expect = 2.550e-8
Identity = 28/57 (49.12%), Postives = 34/57 (59.65%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN +      E VA R L   G DK +  +NP DFM+ I ++GKTNFF KR GE
Sbjct:  280 LIGMNCDLMKQYIEFVADRLLLELGFDKVYRVENPFDFMENISLEGKTNFFEKRVGE 336          
BLAST of SMED30017008 vs. Ensembl Zebrafish
Match: rrm2 (ribonucleotide reductase regulatory subunit M2 [Source:NCBI gene;Acc:100330864])

HSP 1 Score: 53.5286 bits (127), Expect = 2.550e-8
Identity = 28/57 (49.12%), Postives = 34/57 (59.65%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN +      E VA R L   G DK +  +NP DFM+ I ++GKTNFF KR GE
Sbjct:  280 LIGMNCDLMKQYIEFVADRLLLELGFDKVYRVENPFDFMENISLEGKTNFFEKRVGE 336          
BLAST of SMED30017008 vs. Ensembl Zebrafish
Match: rrm2 (ribonucleotide reductase M2 polypeptide [Source:NCBI gene;Acc:30733])

HSP 1 Score: 53.5286 bits (127), Expect = 2.593e-8
Identity = 28/57 (49.12%), Postives = 34/57 (59.65%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN +      E VA R L   G DK +  +NP DFM+ I ++GKTNFF KR GE
Sbjct:  257 LIGMNCDLMKQYIEFVADRLLLELGFDKVYRVENPFDFMENISLEGKTNFFEKRVGE 313          
BLAST of SMED30017008 vs. Ensembl Zebrafish
Match: rrm2 (ribonucleotide reductase regulatory subunit M2 [Source:NCBI gene;Acc:100330864])

HSP 1 Score: 53.5286 bits (127), Expect = 2.593e-8
Identity = 28/57 (49.12%), Postives = 34/57 (59.65%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN +      E VA R L   G DK +  +NP DFM+ I ++GKTNFF KR GE
Sbjct:  257 LIGMNCDLMKQYIEFVADRLLLELGFDKVYRVENPFDFMENISLEGKTNFFEKRVGE 313          
BLAST of SMED30017008 vs. Ensembl Zebrafish
Match: rrm2 (ribonucleotide reductase M2 polypeptide [Source:NCBI gene;Acc:30733])

HSP 1 Score: 53.5286 bits (127), Expect = 2.779e-8
Identity = 28/57 (49.12%), Postives = 34/57 (59.65%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN +      E VA R L   G DK +  +NP DFM+ I ++GKTNFF KR GE
Sbjct:  309 LIGMNCDLMKQYIEFVADRLLLELGFDKVYRVENPFDFMENISLEGKTNFFEKRVGE 365          
BLAST of SMED30017008 vs. Ensembl Xenopus
Match: rrm2b (ribonucleotide reductase M2 B (TP53 inducible) [Source:NCBI gene;Acc:100144925])

HSP 1 Score: 51.9878 bits (123), Expect = 1.184e-7
Identity = 27/57 (47.37%), Postives = 32/57 (56.14%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN        E VA R L   GC K +  +NP DFM+ I ++GKTNFF KR  E
Sbjct:  206 LIGMNCTLMKTYIEFVADRLLVELGCSKAFKAENPFDFMENISLEGKTNFFEKRVSE 262          
BLAST of SMED30017008 vs. Ensembl Xenopus
Match: rrm2b (ribonucleotide reductase M2 B (TP53 inducible) [Source:NCBI gene;Acc:100144925])

HSP 1 Score: 51.6026 bits (122), Expect = 1.509e-7
Identity = 27/57 (47.37%), Postives = 32/57 (56.14%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN        E VA R L   GC K +  +NP DFM+ I ++GKTNFF KR  E
Sbjct:  260 LIGMNCTLMKTYIEFVADRLLVELGCSKAFKAENPFDFMENISLEGKTNFFEKRVSE 316          
BLAST of SMED30017008 vs. Ensembl Xenopus
Match: rrm2b (ribonucleotide reductase M2 B (TP53 inducible) [Source:NCBI gene;Acc:100144925])

HSP 1 Score: 51.6026 bits (122), Expect = 1.733e-7
Identity = 27/57 (47.37%), Postives = 32/57 (56.14%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN        E VA R L   GC K +  +NP DFM+ I ++GKTNFF KR  E
Sbjct:  269 LIGMNCTLMKTYIEFVADRLLVELGCSKAFKAENPFDFMENISLEGKTNFFEKRVSE 325          
BLAST of SMED30017008 vs. Ensembl Xenopus
Match: rrm2b (ribonucleotide reductase M2 B (TP53 inducible) [Source:NCBI gene;Acc:100144925])

HSP 1 Score: 51.2174 bits (121), Expect = 1.993e-7
Identity = 27/57 (47.37%), Postives = 32/57 (56.14%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN        E VA R L   GC K +  +NP DFM+ I ++GKTNFF KR  E
Sbjct:  274 LIGMNCTLMKTYIEFVADRLLVELGCSKAFKAENPFDFMENISLEGKTNFFEKRVSE 330          
BLAST of SMED30017008 vs. Ensembl Xenopus
Match: rrm2b (ribonucleotide reductase M2 B (TP53 inducible) [Source:NCBI gene;Acc:100144925])

HSP 1 Score: 51.2174 bits (121), Expect = 2.128e-7
Identity = 27/57 (47.37%), Postives = 32/57 (56.14%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN        E VA R L   GC K +  +NP DFM+ I ++GKTNFF KR  E
Sbjct:  339 LIGMNCTLMKTYIEFVADRLLVELGCSKAFKAENPFDFMENISLEGKTNFFEKRVSE 395          
BLAST of SMED30017008 vs. Ensembl Mouse
Match: Rrm2b (ribonucleotide reductase M2 B (TP53 inducible) [Source:MGI Symbol;Acc:MGI:2155865])

HSP 1 Score: 50.8322 bits (120), Expect = 5.568e-8
Identity = 27/57 (47.37%), Postives = 32/57 (56.14%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN        E VA R LG  G  K +  +NP DFM+ I ++GKTNFF KR  E
Sbjct:   62 LIGMNCVLMKQYIEFVADRLLGELGFSKIFQAENPFDFMENISLEGKTNFFEKRVSE 118          
BLAST of SMED30017008 vs. Ensembl Mouse
Match: Rrm2b (ribonucleotide reductase M2 B (TP53 inducible) [Source:MGI Symbol;Acc:MGI:2155865])

HSP 1 Score: 50.8322 bits (120), Expect = 2.099e-7
Identity = 27/57 (47.37%), Postives = 32/57 (56.14%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN        E VA R LG  G  K +  +NP DFM+ I ++GKTNFF KR  E
Sbjct:  222 LIGMNCVLMKQYIEFVADRLLGELGFSKIFQAENPFDFMENISLEGKTNFFEKRVSE 278          
BLAST of SMED30017008 vs. Ensembl Mouse
Match: Rrm2b (ribonucleotide reductase M2 B (TP53 inducible) [Source:MGI Symbol;Acc:MGI:2155865])

HSP 1 Score: 50.8322 bits (120), Expect = 2.265e-7
Identity = 27/57 (47.37%), Postives = 32/57 (56.14%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN        E VA R LG  G  K +  +NP DFM+ I ++GKTNFF KR  E
Sbjct:  274 LIGMNCVLMKQYIEFVADRLLGELGFSKIFQAENPFDFMENISLEGKTNFFEKRVSE 330          
BLAST of SMED30017008 vs. Ensembl Mouse
Match: Rrm2 (ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181])

HSP 1 Score: 50.0618 bits (118), Expect = 5.194e-7
Identity = 26/57 (45.61%), Postives = 33/57 (57.89%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN        E VA R +   G +K +  +NP DFM+ I ++GKTNFF KR GE
Sbjct:  313 LIGMNCTLMKQYIEFVADRLMLELGFNKIFRVENPFDFMENISLEGKTNFFEKRVGE 369          
BLAST of SMED30017008 vs. Ensembl Mouse
Match: Rrm2 (ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181])

HSP 1 Score: 46.2098 bits (108), Expect = 7.568e-6
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = -3
Query:  372 EXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 503
            E VA R +   G +K +  +NP DFM+ I ++GKTNFF KR GE
Sbjct:  179 EFVADRLMLELGFNKIFRVENPFDFMENISLEGKTNFFEKRVGE 222          
BLAST of SMED30017008 vs. UniProt/SwissProt
Match: sp|P0DKH3|RI2BL_ARATH (Ribonucleoside-diphosphate reductase small chain B OS=Arabidopsis thaliana OX=3702 GN=RNR2B PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 5.423e-10
Identity = 35/77 (45.45%), Postives = 41/77 (53.25%), Query Frame = -3
Query:  324 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE----NSMSSGEGQPQFDDVH 542
            L GMN E      E VA R L   GC K +   NP D+M+ I + GKTNFF KR GE    + MSS  G   F+D H
Sbjct:  249 LVGMNRELMSQYIEFVADRLLAALGCAKVYGVSNPFDWMELISLQGKTNFFEKRVGEYQKASIMSSVHGNAAFNDDH 325          
BLAST of SMED30017008 vs. UniProt/SwissProt
Match: sp|P42170|RIR2_CAEEL (Ribonucleoside-diphosphate reductase small chain OS=Caenorhabditis elegans OX=6239 GN=rnr-2 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.459e-9
Identity = 33/73 (45.21%), Postives = 39/73 (53.42%), Query Frame = -3
Query:  333 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGENS---MSSGEGQPQFD 542
            + GMN        E VA   L   GCDK + +KNP DFM+ I IDGKTNFF KR  E     +   E + QFD
Sbjct:  304 MIGMNCRLMSQYIEFVADHLLVELGCDKLYKSKNPFDFMENISIDGKTNFFEKRVSEYQRPGVMVNEAERQFD 376          
BLAST of SMED30017008 vs. UniProt/SwissProt
Match: sp|P07201|RIR2_SPISO (Ribonucleoside-diphosphate reductase small chain OS=Spisula solidissima OX=6584 PE=2 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 7.819e-9
Identity = 31/61 (50.82%), Postives = 37/61 (60.66%), Query Frame = -3
Query:  372 CRFXLXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 554
            CR  L GMN +      E VA R L    CDK +N +NP DFM+ I ++GKTNFF KR GE
Sbjct:  302 CR--LIGMNCDLMRQYIEFVADRLLLELKCDKLYNKENPFDFMEHISLEGKTNFFEKRVGE 360          
BLAST of SMED30017008 vs. UniProt/SwissProt
Match: sp|Q9DHU2|RIR2_YLDV (Ribonucleoside-diphosphate reductase small chain OS=Yaba-like disease virus OX=132475 GN=20L PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 8.406e-9
Identity = 29/57 (50.88%), Postives = 36/57 (63.16%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN +      E VA R L   GCDK++ +KNP DFM+ I ++GKTNFF KR  E
Sbjct:  248 LIGMNCDLMKQYIEFVADRLLLELGCDKYYCSKNPFDFMENISLEGKTNFFEKRVSE 304          
BLAST of SMED30017008 vs. UniProt/SwissProt
Match: sp|O15910|RIR2_TRYBB (Ribonucleoside-diphosphate reductase small chain OS=Trypanosoma brucei brucei OX=5702 GN=RNR2 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.040e-8
Identity = 29/57 (50.88%), Postives = 35/57 (61.40%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN +      E VA R L   G D+ +N+KNP DFMD I + GKTNFF K+ GE
Sbjct:  259 LIGMNSQLMTQYIEFVADRLLVSLGYDRHYNSKNPFDFMDMISLQGKTNFFEKKVGE 315          
BLAST of SMED30017008 vs. TrEMBL
Match: I1ZI90 (Ribonucleoside diphosphate reductase subunit M2-2 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.853e-20
Identity = 48/73 (65.75%), Postives = 52/73 (71.23%), Query Frame = -3
Query:  324 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGENSMSSGEGQPQFDDVH 542
            L GMN E      E VA R L   GCDKFWNT+NPLDFMD ICIDGKTNFF KR GE SMSS E + +FDDV+
Sbjct:  244 LIGMNAESMCEYIEFVADRLLVELGCDKFWNTENPLDFMDNICIDGKTNFFEKRVGEYSMSSVEDKHKFDDVN 316          

HSP 2 Score: 56.6102 bits (135), Expect = 4.545e-6
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = -3
Query:  120 FVEKICLDGETNCF*RRVSEYSLSSGEGKPQFDDVHFDIDF 242
            F++ IC+DG+TN F +RV EYS+SS E K +FDDV+FDIDF
Sbjct:  281 FMDNICIDGKTNFFEKRVGEYSMSSVEDKHKFDDVNFDIDF 321          
BLAST of SMED30017008 vs. TrEMBL
Match: A0A1J5L025 (Ribonucleoside-diphosphate reductase OS=Crocinitomix sp. MedPE-SWsnd OX=1860084 GN=BM555_06130 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.720e-10
Identity = 37/70 (52.86%), Postives = 41/70 (58.57%), Query Frame = -3
Query:  345 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGENS----MSSGEGQ 542
            L GMN E      E VA R LG  GC+K +NT NP DFMD I I GKTNFF KR  E      ++SGE Q
Sbjct:  248 LIGMNAELMQQYIEFVADRLLGELGCEKVYNTTNPFDFMDMISIQGKTNFFEKRVAEYQKAGVLNSGENQ 317          
BLAST of SMED30017008 vs. TrEMBL
Match: E3M8C7 (Uncharacterized protein OS=Caenorhabditis remanei OX=31234 GN=CRE_13354 PE=4 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 8.469e-10
Identity = 35/73 (47.95%), Postives = 40/73 (54.79%), Query Frame = -3
Query:  333 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGENS---MSSGEGQPQFD 542
            + GMN        E VA   L   GCDK +N KNP DFM+ I IDGKTNFF KR  E     + S E + QFD
Sbjct:   70 MIGMNCRLMSQYIEFVADHLLAELGCDKLYNVKNPFDFMENISIDGKTNFFEKRVSEYQRPGVMSTETERQFD 142          
BLAST of SMED30017008 vs. TrEMBL
Match: A0A1I7BDU3 (Ribonucleoside-diphosphate reductase beta chain OS=Lishizhenia tianjinensis OX=477690 GN=SAMN05216474_2715 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.858e-9
Identity = 37/71 (52.11%), Postives = 39/71 (54.93%), Query Frame = -3
Query:  342 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGENS----MSSGEGQP 542
            L GMN E      E VA R L   GC+K +N  NP DFMD I I GKTNFF KR GE      MS  EGQ 
Sbjct:  247 LIGMNSELMSQYIEFVADRLLAELGCEKVFNVSNPFDFMDMISIQGKTNFFEKRVGEYQKAGVMSGNEGQS 317          
BLAST of SMED30017008 vs. TrEMBL
Match: A0A261C734 (Uncharacterized protein (Fragment) OS=Caenorhabditis latens OX=1503980 GN=FL83_07231 PE=4 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 4.169e-9
Identity = 34/73 (46.58%), Postives = 39/73 (53.42%), Query Frame = -3
Query:  333 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGENS---MSSGEGQPQFD 542
            + GMN        E V    L   GCDK +N KNP DFM+ I IDGKTNFF KR  E     + S E + QFD
Sbjct:   61 MIGMNCRLMSQYIEIVTDHLLAELGCDKVYNVKNPFDFMENISIDGKTNFFEKRVSEYQRPGVMSTETERQFD 133          
BLAST of SMED30017008 vs. Ensembl Cavefish
Match: rrm2 (ribonucleotide reductase regulatory subunit M2 [Source:NCBI gene;Acc:103024314])

HSP 1 Score: 50.8322 bits (120), Expect = 1.808e-7
Identity = 26/57 (45.61%), Postives = 33/57 (57.89%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN +      E VA R +   G  K +  +NP DFM+ I ++GKTNFF KR GE
Sbjct:  309 LIGMNCDLMKQYIEFVADRLMLELGFSKIYKVENPFDFMENISLEGKTNFFEKRVGE 365          
BLAST of SMED30017008 vs. Ensembl Cavefish
Match: rrm2 (ribonucleotide reductase regulatory subunit M2 [Source:NCBI gene;Acc:103024314])

HSP 1 Score: 50.8322 bits (120), Expect = 1.808e-7
Identity = 26/57 (45.61%), Postives = 33/57 (57.89%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN +      E VA R +   G  K +  +NP DFM+ I ++GKTNFF KR GE
Sbjct:  309 LIGMNCDLMKQYIEFVADRLMLELGFSKIYKVENPFDFMENISLEGKTNFFEKRVGE 365          
BLAST of SMED30017008 vs. Ensembl Cavefish
Match: rrm2b (ribonucleoside-diphosphate reductase subunit M2 B-like [Source:NCBI gene;Acc:103028967])

HSP 1 Score: 46.595 bits (109), Expect = 4.595e-6
Identity = 24/57 (42.11%), Postives = 30/57 (52.63%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L G+N        E VA R L      K +  +NP DFM+ I ++GKTNFF KR  E
Sbjct:  272 LIGINCSLMKQYIEFVADRLLTDLAMPKVYKAENPFDFMESISLEGKTNFFEKRVAE 328          
BLAST of SMED30017008 vs. Ensembl Sea Lamprey
Match: rrm2 (ribonucleotide reductase regulatory subunit M2 [Source:NCBI gene;Acc:100330864])

HSP 1 Score: 54.299 bits (129), Expect = 2.285e-9
Identity = 27/57 (47.37%), Postives = 34/57 (59.65%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN +      E VA R LG  GC K +  +NP DFM+ I ++GKTNFF K+  E
Sbjct:  261 LIGMNCDLMKQYIEFVADRLLGELGCAKVYRAENPFDFMENISLEGKTNFFEKKVAE 317          
BLAST of SMED30017008 vs. Ensembl Yeast
Match: RNR2 (Ribonucleotide-diphosphate reductase (RNR), small subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits; RNR2 has a paralog, RNR4, that arose from the whole genome duplication [Source:SGD;Acc:S000003563])

HSP 1 Score: 49.2914 bits (116), Expect = 8.449e-8
Identity = 25/54 (46.30%), Postives = 31/54 (57.41%), Query Frame = -3
Query:  381 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KR 542
            L GMN +      E VA R L   G  K++  +NP DFM+ I + GKTNFF KR
Sbjct:  319 LLGMNADLMNQYVEFVADRLLVAFGNKKYYKVENPFDFMENISLAGKTNFFEKR 372          
BLAST of SMED30017008 vs. Ensembl Nematostella
Match: EDO42117 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S2C2])

HSP 1 Score: 55.0694 bits (131), Expect = 2.072e-9
Identity = 29/61 (47.54%), Postives = 34/61 (55.74%), Query Frame = -3
Query:  360 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGENSMS 542
            L GMN        E VA R L    C K +N +NP DFM+ I ++GKTNFF KR GE   S
Sbjct:  264 LIGMNCALMRQYIEFVADRLLVALNCQKVYNVENPFDFMENISLEGKTNFFEKRVGEYQKS 324          
BLAST of SMED30017008 vs. Ensembl Nematostella
Match: EDO42116 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S2C0])

HSP 1 Score: 55.0694 bits (131), Expect = 2.892e-9
Identity = 29/61 (47.54%), Postives = 34/61 (55.74%), Query Frame = -3
Query:  360 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGENSMS 542
            L GMN        E VA R L    C K +N +NP DFM+ I ++GKTNFF KR GE   S
Sbjct:  307 LIGMNCALMRQYIEFVADRLLVALNCQKVYNAENPFDFMENISLEGKTNFFEKRVGEYQKS 367          
BLAST of SMED30017008 vs. Ensembl Nematostella
Match: EDO42087 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S2C1])

HSP 1 Score: 54.299 bits (129), Expect = 4.820e-9
Identity = 28/61 (45.90%), Postives = 34/61 (55.74%), Query Frame = -3
Query:  360 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGENSMS 542
            L GMN        E VA R L    C K +N +NP DFM+ I ++GKTNF+ KR GE   S
Sbjct:  307 LIGMNCALMRQYIEFVADRLLVALNCQKVYNVENPFDFMENISLEGKTNFYEKRVGEYQKS 367          
BLAST of SMED30017008 vs. Ensembl Medaka
Match: ENSORLT00000040809.1 (ribonucleoside-diphosphate reductase subunit M2 [Source:NCBI gene;Acc:101158912])

HSP 1 Score: 52.7582 bits (125), Expect = 8.610e-9
Identity = 28/57 (49.12%), Postives = 33/57 (57.89%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN E      E VA R L   G  K +  +NP DFM+ I ++GKTNFF KR GE
Sbjct:   62 LIGMNCELMKQYIEFVADRLLLELGFSKIYRAENPFDFMENISLEGKTNFFEKRVGE 118          
BLAST of SMED30017008 vs. Ensembl Medaka
Match: ENSORLT00000025443.2 (ribonucleoside-diphosphate reductase subunit M2 [Source:NCBI gene;Acc:101158912])

HSP 1 Score: 53.1434 bits (126), Expect = 2.519e-8
Identity = 28/57 (49.12%), Postives = 33/57 (57.89%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN E      E VA R L   G  K +  +NP DFM+ I ++GKTNFF KR GE
Sbjct:  220 LIGMNCELMKQYIEFVADRLLLELGFSKIYRAENPFDFMENISLEGKTNFFEKRVGE 276          
BLAST of SMED30017008 vs. Ensembl Medaka
Match: RRM2 (ribonucleoside-diphosphate reductase subunit M2-like [Source:NCBI gene;Acc:101166844])

HSP 1 Score: 53.1434 bits (126), Expect = 2.778e-8
Identity = 28/57 (49.12%), Postives = 33/57 (57.89%), Query Frame = -3
Query:  372 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGE 542
            L GMN E      E VA R L   G  K +  +NP DFM+ I ++GKTNFF KR GE
Sbjct:  302 LIGMNCELMKQYIEFVADRLLLELGFSKIYRAENPFDFMENISLEGKTNFFEKRVGE 358          
BLAST of SMED30017008 vs. Planmine SMEST
Match: SMESG000044184.1 (SMESG000044184.1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.766e-24
Identity = 48/73 (65.75%), Postives = 52/73 (71.23%), Query Frame = -3
Query:  324 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGENSMSSGEGQPQFDDVH 542
            L GMN E      E VA R L   GCDKFWNT+NPLDFMD ICIDGKTNFF KR GE SMSS E + +FDDV+
Sbjct:   88 LIGMNAESMCEYIEFVADRLLVELGCDKFWNTENPLDFMDNICIDGKTNFFEKRCGEYSMSSVEDKHKFDDVN 160          

HSP 2 Score: 53.5286 bits (127), Expect = 4.726e-9
Identity = 25/41 (60.98%), Postives = 33/41 (80.49%), Query Frame = -3
Query:  120 FVEKICLDGETNCF*RRVSEYSLSSGEGKPQFDDVHFDIDF 242
            F++ IC+DG+TN F +R  EYS+SS E K +FDDV+FDIDF
Sbjct:  125 FMDNICIDGKTNFFEKRCGEYSMSSVEDKHKFDDVNFDIDF 165          
BLAST of SMED30017008 vs. Planmine SMEST
Match: SMESG000079368.1 (SMESG000079368.1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.462e-23
Identity = 48/73 (65.75%), Postives = 52/73 (71.23%), Query Frame = -3
Query:  324 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGENSMSSGEGQPQFDDVH 542
            L GMN E      E VA R L   GCDKFWNT+NPLDFMD ICIDGKTNFF KR GE SMSS E + +FDDV+
Sbjct:  244 LIGMNAESMCEYIEFVADRLLVELGCDKFWNTENPLDFMDNICIDGKTNFFEKRVGEYSMSSVEDKHKFDDVN 316          

HSP 2 Score: 56.6102 bits (135), Expect = 1.264e-9
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = -3
Query:  120 FVEKICLDGETNCF*RRVSEYSLSSGEGKPQFDDVHFDIDF 242
            F++ IC+DG+TN F +RV EYS+SS E K +FDDV+FDIDF
Sbjct:  281 FMDNICIDGKTNFFEKRVGEYSMSSVEDKHKFDDVNFDIDF 321          
BLAST of SMED30017008 vs. Planmine SMEST
Match: SMESG000044188.1 (SMESG000044188.1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.462e-23
Identity = 48/73 (65.75%), Postives = 52/73 (71.23%), Query Frame = -3
Query:  324 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGENSMSSGEGQPQFDDVH 542
            L GMN E      E VA R L   GCDKFWNT+NPLDFMD ICIDGKTNFF KR GE SMSS E + +FDDV+
Sbjct:  244 LIGMNAESMCEYIEFVADRLLVELGCDKFWNTENPLDFMDNICIDGKTNFFEKRVGEYSMSSVEDKHKFDDVN 316          

HSP 2 Score: 56.6102 bits (135), Expect = 1.264e-9
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = -3
Query:  120 FVEKICLDGETNCF*RRVSEYSLSSGEGKPQFDDVHFDIDF 242
            F++ IC+DG+TN F +RV EYS+SS E K +FDDV+FDIDF
Sbjct:  281 FMDNICIDGKTNFFEKRVGEYSMSSVEDKHKFDDVNFDIDF 321          
BLAST of SMED30017008 vs. Planmine SMEST
Match: SMESG000044184.1 (SMESG000044184.1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.065e-23
Identity = 48/73 (65.75%), Postives = 52/73 (71.23%), Query Frame = -3
Query:  324 LXGMNPEXXXXDXEXVAXRXLG*XGCDKFWNTKNPLDFMDKICIDGKTNFF*KRGGENSMSSGEGQPQFDDVH 542
            L GMN E      E VA R L   GCDKFWNT+NPLDFMD ICIDGKTNFF KR GE SMSS E + +FDDV+
Sbjct:  190 LIGMNAESMCEYIEFVADRLLVELGCDKFWNTENPLDFMDNICIDGKTNFFEKRCGEYSMSSVEDKHKFDDVN 262          

HSP 2 Score: 53.5286 bits (127), Expect = 1.246e-8
Identity = 25/41 (60.98%), Postives = 33/41 (80.49%), Query Frame = -3
Query:  120 FVEKICLDGETNCF*RRVSEYSLSSGEGKPQFDDVHFDIDF 242
            F++ IC+DG+TN F +R  EYS+SS E K +FDDV+FDIDF
Sbjct:  227 FMDNICIDGKTNFFEKRCGEYSMSSVEDKHKFDDVNFDIDF 267          
The following BLAST results are available for this feature:
BLAST of SMED30017008 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RRM2B1.047e-645.61ribonucleotide reductase regulatory TP53 inducible... [more]
RRM21.515e-645.61ribonucleotide reductase regulatory subunit M2 [So... [more]
RRM21.515e-645.61ribonucleotide reductase regulatory subunit M2 [So... [more]
RRM22.038e-645.61ribonucleotide reductase regulatory subunit M2 [So... [more]
RRM22.038e-645.61ribonucleotide reductase regulatory subunit M2 [So... [more]
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BLAST of SMED30017008 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rnr-21.147e-1045.21Ribonucleoside-diphosphate reductase small chain ... [more]
F19G12.26.377e-845.21pep chromosome:WBcel235:X:1427774:1430871:1 gene:W... [more]
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BLAST of SMED30017008 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
RnrS3.063e-950.88gene:FBgn0011704 transcript:FBtr0088046[more]
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BLAST of SMED30017008 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rrm22.550e-849.12ribonucleotide reductase M2 polypeptide [Source:NC... [more]
rrm22.550e-849.12ribonucleotide reductase regulatory subunit M2 [So... [more]
rrm22.593e-849.12ribonucleotide reductase M2 polypeptide [Source:NC... [more]
rrm22.593e-849.12ribonucleotide reductase regulatory subunit M2 [So... [more]
rrm22.779e-849.12ribonucleotide reductase M2 polypeptide [Source:NC... [more]
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BLAST of SMED30017008 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rrm2b1.184e-747.37ribonucleotide reductase M2 B (TP53 inducible) [So... [more]
rrm2b1.509e-747.37ribonucleotide reductase M2 B (TP53 inducible) [So... [more]
rrm2b1.733e-747.37ribonucleotide reductase M2 B (TP53 inducible) [So... [more]
rrm2b1.993e-747.37ribonucleotide reductase M2 B (TP53 inducible) [So... [more]
rrm2b2.128e-747.37ribonucleotide reductase M2 B (TP53 inducible) [So... [more]
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BLAST of SMED30017008 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rrm2b5.568e-847.37ribonucleotide reductase M2 B (TP53 inducible) [So... [more]
Rrm2b2.099e-747.37ribonucleotide reductase M2 B (TP53 inducible) [So... [more]
Rrm2b2.265e-747.37ribonucleotide reductase M2 B (TP53 inducible) [So... [more]
Rrm25.194e-745.61ribonucleotide reductase M2 [Source:MGI Symbol;Acc... [more]
Rrm27.568e-650.00ribonucleotide reductase M2 [Source:MGI Symbol;Acc... [more]
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BLAST of SMED30017008 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P0DKH3|RI2BL_ARATH5.423e-1045.45Ribonucleoside-diphosphate reductase small chain B... [more]
sp|P42170|RIR2_CAEEL1.459e-945.21Ribonucleoside-diphosphate reductase small chain O... [more]
sp|P07201|RIR2_SPISO7.819e-950.82Ribonucleoside-diphosphate reductase small chain O... [more]
sp|Q9DHU2|RIR2_YLDV8.406e-950.88Ribonucleoside-diphosphate reductase small chain O... [more]
sp|O15910|RIR2_TRYBB1.040e-850.88Ribonucleoside-diphosphate reductase small chain O... [more]
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BLAST of SMED30017008 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
I1ZI908.853e-2065.75Ribonucleoside diphosphate reductase subunit M2-2 ... [more]
A0A1J5L0255.720e-1052.86Ribonucleoside-diphosphate reductase OS=Crocinitom... [more]
E3M8C78.469e-1047.95Uncharacterized protein OS=Caenorhabditis remanei ... [more]
A0A1I7BDU32.858e-952.11Ribonucleoside-diphosphate reductase beta chain OS... [more]
A0A261C7344.169e-946.58Uncharacterized protein (Fragment) OS=Caenorhabdit... [more]
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BLAST of SMED30017008 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
rrm21.808e-745.61ribonucleotide reductase regulatory subunit M2 [So... [more]
rrm21.808e-745.61ribonucleotide reductase regulatory subunit M2 [So... [more]
rrm2b4.595e-642.11ribonucleoside-diphosphate reductase subunit M2 B-... [more]
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BLAST of SMED30017008 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rrm22.285e-947.37ribonucleotide reductase regulatory subunit M2 [So... [more]
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BLAST of SMED30017008 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
RNR28.449e-846.30Ribonucleotide-diphosphate reductase (RNR), small ... [more]
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BLAST of SMED30017008 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 3
Match NameE-valueIdentityDescription
EDO421172.072e-947.54Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO421162.892e-947.54Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO420874.820e-945.90Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of SMED30017008 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3
Match NameE-valueIdentityDescription
ENSORLT00000040809.18.610e-949.12ribonucleoside-diphosphate reductase subunit M2 [S... [more]
ENSORLT00000025443.22.519e-849.12ribonucleoside-diphosphate reductase subunit M2 [S... [more]
RRM22.778e-849.12ribonucleoside-diphosphate reductase subunit M2-li... [more]
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BLAST of SMED30017008 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000044184.12.766e-2465.75SMESG000044184.1[more]
SMESG000079368.12.462e-2365.75SMESG000079368.1[more]
SMESG000044188.12.462e-2365.75SMESG000044188.1[more]
SMESG000044184.17.065e-2365.75SMESG000044184.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30017008 ID=SMED30017008|Name=SMED30017008|organism=Schmidtea mediterranea sexual|type=transcript|length=580bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAATGG
CCGTTTATTAAAACATTTCCACCCAAAACACATTAAAGGCCCCCGGGGGC
CAAAAGCCGGAATCCCTCAAAAGTCAATATCGAAATGGACATCATCAAAT
TGGGGTTTGCCCTCACCGCTCGACAGGGAATACTCACTGACTCGACGCTA
AAAACAATTAGTTTCCCCATCGAGGCAAATTTTTTCAACAAACAAAAATA
GCCATTTCCACCCAAAACACTTTAATTGCCCCCTGGCCCCAAAAAACGGA
ATCCCTCAAAAATCAATATCGAAATGGACATCATCAAATTGGGGTTGGCC
CTCACCGCTCGACATGGAATTTTCCCCGCCTCGTTTTTAAAAAAAATTAG
TTTTCCCATCGATGCAAATTTTATCCATGAAATCCAACGGGTTCTTTGTG
TTCCAAAACTTGTCACAGCCCANTTAACCCAGCANCCGGNGGGCCACAAN
TTCANTATCCNCNCACNTCGNTTCAGGGTTCATGCCANTCAANTNAAACC
GGCANTGCGTNGGGGANAAATTCCTTTTCG
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000429neoblast
PLANA:0002013Category 1 cell