SMED30016933

Overview
NameSMED30016933
Smed IDSMED30016933
Length (bp)1547
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30016933 (SMED30016933) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30016933 (SMED30016933) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top


 

Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020




SMED30016933

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
cephalic gangliaSMED30016933h1SMcG0000318 dd_Smed_v4_8825_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30016933h1SMcG0000318 dd_Smed_v4_8825_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30016933h1SMcG0000318 dd_Smed_v4_8825_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
enteric muscle cellSMED30016933h1SMcG0000318 dd_Smed_v4_8825_0_1dd_Smed_v4PMID:30471994
Scimone et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30016933 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.011855:10502..12048 -7627
Homology
BLAST of SMED30016933 vs. Planmine SMEST
Match: SMESG000065836.1 (SMESG000065836.1)

HSP 1 Score: 848.195 bits (2190), Expect = 0.000e+0
Identity = 478/483 (98.96%), Postives = 480/483 (99.38%), Query Frame = 1
Query:   46 MDISERNYRIQKLRHLKEIYIYNLLVFFISIGLVHSVSWMAMKVDSDIHHLRRFSNTASAFGSLPFSINVFLILXXXXXXXXXXXXXXXSTLESNLTFYIILIPLMIVEFVYGVLLIGSVFSTIECSPKFTIVYCLMCLTNSFCYMVFLIDTNKSIEFGEDWKLNFTNFSTLLFAISNIFMFTFLQFHLDQSRVFMSIMGKSTDLCLNQNITSGDTILGMVNRLFLQMFAVMFKVFLISGIASITFFYQPLLRYYKHLQRFKNNPPSILTLDQSQWPSKVISVFLMLGITSIVTLYIFSPKQWYNIFLATANILSCLMEVLMVFVLIDWPDKGESFKHIEVLLFLGLFGHLTKEISQLQYFIYNARESYRTIKIIKSLSEILNNMLMNIFLSSLLRKRWHNNRKLFWIIVSVLVLIQNFGYVFDELYGKKKEFNGDFKEELSYTILNSIGLGXXXXXXXXXXXXXXXXXXXXXXPATFSKLVL 1494
            MDISERNYRIQKLRHLKEIYIYNLLVFFISIGLVHSVSWMAMKVDSDIHHLRRFSNTASAFGSLPFSINVFLILYNFYNNYKFRNFFFRSTLESNLTFYIILIPLMIVEFVYGVLLIGSVFSTIECSPKFTIVYCLMCLTNSFCYMVFLIDTNKSIEFGEDWKLNFTNFSTLLFAISNIFMFTFLQFHLDQSR+FMSIMGKSTDLCLNQNITSGDTILGMVNRLFLQMFAVMFKVFLISGIASITFFYQPLLRYYKHLQRFKNNPPSILTLDQSQWPSKVISVFLM GITSIVTLYIFSPKQ YNIFLATANILSCLMEVLMVFVLIDWPDKGE FKHIEVLLFLGLFGHLTKEISQLQYFIYNARESY+TIKIIKSLSEILNNMLMNIFLSSLLRKRWHNNRKLFWIIVSVLVLIQNFGYVFDELYGKKKEFNGDFKEELSYTILNSIGLGFFFLYRYIIFIILISFLLFLSFPATFSKLVL
Sbjct:    1 MDISERNYRIQKLRHLKEIYIYNLLVFFISIGLVHSVSWMAMKVDSDIHHLRRFSNTASAFGSLPFSINVFLILYNFYNNYKFRNFFFRSTLESNLTFYIILIPLMIVEFVYGVLLIGSVFSTIECSPKFTIVYCLMCLTNSFCYMVFLIDTNKSIEFGEDWKLNFTNFSTLLFAISNIFMFTFLQFHLDQSRIFMSIMGKSTDLCLNQNITSGDTILGMVNRLFLQMFAVMFKVFLISGIASITFFYQPLLRYYKHLQRFKNNPPSILTLDQSQWPSKVISVFLMFGITSIVTLYIFSPKQSYNIFLATANILSCLMEVLMVFVLIDWPDKGECFKHIEVLLFLGLFGHLTKEISQLQYFIYNARESYKTIKIIKSLSEILNNMLMNIFLSSLLRKRWHNNRKLFWIIVSVLVLIQNFGYVFDELYGKKKEFNGDFKEELSYTILNSIGLGFFFLYRYIIFIILISFLLFLSFPATFSKLVL 483          
BLAST of SMED30016933 vs. Planmine SMEST
Match: SMESG000009259.1 (SMESG000009259.1)

HSP 1 Score: 132.494 bits (332), Expect = 2.452e-33
Identity = 129/439 (29.38%), Postives = 218/439 (49.66%), Query Frame = 1
Query:   76 QKLRHLKEIYIYNLLVFFISIGLVHSVSWMAMKVDSDIHHLRRFSNTASAFGSLPFSINVFLILXXXXXXXXXXXXXXXSTLESNLTFYIILIPLMIVEFVYGVLLIGSVFSTIECSPKFTIVYCLMCLTNSFCYMVFLIDTNKSIEFGEDWKLNFTNFSTLLFAISNIFMFTFLQFHLDQSRVFMSIMGKSTDLCLNQNITSGDT--ILGMVNRLFLQMF----AVMFKVFLISGIASITFFYQPLLRYYKHLQRF-KNNPPSILTLDQSQWPSKVISVFLMLGITSIVTLYI------FSPKQWYNIFLATANILSCLMEVLMVFVLIDWPDKGESFKHIEVLLFLGLFGHLTKEISQLQYFIYNARESYRTIKIIKS---LSEILNNMLMNIFLSSLLRKRWHNNRKLFW---IIVSVLVLIQNFGYVFDELYGKK 1335
            Q  RHL EI  YNL V+ + IG++    + ++ ++    +  RFSNT S FG     IN+F + YN+Y N + RNFF    L+S L FY+I +P +I+  +Y + +   +F +  C  +  + Y + C   +   ++ L + +   + GE W + + NF+TLL    N+ +F   QF L+Q    +SI     D  ++ N  S D+    G   R FL  F     +M K  ++ G +S  FF  PL+R Y++L++F K + PSI  +  S++ SKV+++  ++   ++ +++I      FS K  Y I +   +     M +  +  L+ WP  G+S   +EVLL++G+ G   K  +  + F++        I +I     L  I  + L+  F+  L+ KRW      FW   I+  VL+ I N    F + Y + 
Sbjct:    6 QGKRHLLEICSYNLGVYTLVIGILFMYGYNSVFLEQPPLYEPRFSNTVSIFGVTSHIINIFFLFYNWYINIRNRNFFSPIKLDSVLIFYLICVPFLILAILYSIFVTMKLFFSPWCMARADVAYSVSCNILALLILIHLAELSFYRDTGEKWIITYVNFTTLLITFINVMVFVIFQFSLEQINTLISIY----DFNISYNPCSMDSRNFTGSFMRNFLFFFKDWEKLMLKGIIVFGTSSSVFFIGPLMRQYRNLKKFNKASIPSI-AVRNSRF-SKVLAIPFIIIALAVFSVFIFINITQFSTKN-YEIMMVIQHAFGSCMIIWQIKTLLHWPSNGKSISSLEVLLYVGVCGQSLKNTALFEQFLHQIVFYSDYIYLINDFHFLLSIFYSFLITSFICLLIGKRWEVTNGNFWFITILCLVLISINNAISSFQDFYKRN 437          
BLAST of SMED30016933 vs. Planmine SMEST
Match: SMESG000062817.1 (SMESG000062817.1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.742e-16
Identity = 101/418 (24.16%), Postives = 187/418 (44.74%), Query Frame = 1
Query:   76 QKLRHLKEIYIYNLLVFFISIGLVHSVSWMAMKVDSDIHHLRRFSNTASAFGSLPFSINV-FLILXXXXXXXXXXXXXXXSTLESNLTFYIILIPLMIVEFVYGVL-LIGSVFSTIECSPKFTIVYCLMCLTNSFCYMVFLIDTNKSIEFGEDWKLNFTNFSTLLFAISNIFMFTFLQFHLDQSRVFMSIMGKSTD--LCLNQNITSGDTILGMVNRLFLQMFAVMFKVFLISGIASITFFYQPLLRYYKHLQRFKNNPPSILTLDQSQWPSKVISVFLMLGITSIVTLYIFSPKQWYNIFLATAN--ILSCLMEVLMVFVLIDWPDKGESFKHIEVLLFLGLFGHLTKEISQLQYF---IYNARESYRTIKIIKSLSEILNNMLMNIFLSSLLRKRWHNNRKLFWIIVSVLVLIQNF 1302
            Q+ R+ KE+  Y+      S  L    SW+A+ +   I       N  +   SL +S+NV FL L  + +     +F+     +   +FY I IPL I   +  +L L+ SV++ ++C     I+Y +         MVF+I  N      ++W++NF     +L  I N+F   ++ +      +F           +CL  N+T G+     +NR ++    +   V +I G+ S+ F+ +P LR    L+ +K     +  L +    S    +   LG+  +V+ +IF       I L   +  +L C M       L   P K      +E+L +LG  G +   IS L+ +   +    +S   ++I+ ++   +N+M  NIF+  L+ K+W+    + + + ++ +L++NF
Sbjct:   15 QENRNFKEVVFYSFGCVLFSTALTQVSSWIALYLSRTIKPSESSLNFITGSESLLYSLNVTFLCLSLYKSYEYRNHFYSILNEQGKPSFYCIYIPLTIAVVLKCILNLMISVYN-LKCYSIGVIIYSVSLFLLVVGNMVFVIMVNMYQVNADEWEINFFLLLAILPTIINMFCVCYMNYVFSNILLFYKSFSLKNQGYVCLFVNLTDGNYFKEKLNRFYISTLEITPNVLMIYGLLSVIFYLKPFLRNLALLEIYK-KKTDLNNLTEISGKSWRFLICFSLGLILLVSNFIFRLDDLSIIILYILSIFVLICQM-----INLKKVPSKPRRLVLLEILFYLGYCGIVLLRISSLRVYYSLVIALNDSKYIMQIVHTILSFVNSMFTNIFIVLLISKKWNYILGVNFKVANLFLLVENF 425          
BLAST of SMED30016933 vs. Planmine SMEST
Match: SMESG000051898.1 (SMESG000051898.1)

HSP 1 Score: 65.4698 bits (158), Expect = 4.791e-11
Identity = 115/432 (26.62%), Postives = 199/432 (46.06%), Query Frame = 1
Query:  133 SIGLVHSVSWMAMKVDSDIHHLRRFSNTASAFGSLPFSINVFLILXXXXXXXXXXXXXXXSTLESNLTFYIILIPLMIVEFVYGVLLIGSVFS--TIECSPKFTIVYCLMCLTNSFCYMVFLIDTNKSIEFGEDWKLNFTNFSTLLFAISNIFMFTFLQFHLDQSRVFMSIMGKSTDLCLNQN-ITSGDTILGMVNRLFLQMFAVMFKVFLISGIASITFFYQPLLRYYKHLQRF---------KNNPPSILTLDQSQWPSKV-ISVF--LMLGITSI---VTLYIFSPKQWYNIFLATANILSCLMEVLMVFVLIDWPDKGESFKHI----EVLLFLGLFG---HLTKEISQLQYFIYNARESYRTIKIIKSLSEILNNMLMNIFLSSLLRKRWHNN-RKLFWIIV--SVLVLIQNFGYVFDELYGKKKEF 1344
            SIGL+ +  W  + + S+   L          GS+   + VFLIL+  Y N+K+RN F +  +E+    Y   IP  I  FV   L+I  V S    EC+ K  +++    +      +VF+ +TN   +FGE W LNF N    L  +S++         L+Q   F +++ KS    +NQ+ I +   I      L++ +   ++K  ++ G+ S  F ++ L R Y +LQ +         K+N   +    Q     K+ + +F  L+ GI  +   + +YI S +   +I +         M  L +F++ +      S   I    EV+++LGL G   H    I+   Y +YN   +     +IK + +IL+N++ ++F + L+ K W+N   K F  +   +  + + NF Y+F +L    KEF
Sbjct:   25 SIGLLITYGWNTLTLASN-SFLEFVWAPLYICGSVFNLLVVFLILFALYMNHKYRNLFNKCPMENQDILYYFCIPATI--FVISTLIITLVKSLYIAECNGKMIVLFIFTSVIYFVVIVVFIAETNSVFDFGESWALNFVNMMVSLIIVSSLVFNIVFNTSLEQMDYFAAVINKS---LINQSCIDNLPFIAQRTYYLWVSVRIFLYKSIVLFGLFSTVFIFKSLYRNYLYLQFYKYDGKTNDLKSNDEDVNRNSQKNNLKKLYLKIFSTLLFGILFLAINIAVYIRSKEYLEHILIGMEMFSYISMIGLTIFMMKNLIFTDFSISRIYVFNEVIIWLGLCGQLVHCFAVIAAYIYLMYNEVNAIYIAILIKYVLQILSNIVQSVFEAILVEKLWNNKIGKNFSTMAFGAFYIAVNNFVYIFTDLILVYKEF 450          
BLAST of SMED30016933 vs. Planmine SMEST
Match: SMESG000025344.1 (SMESG000025344.1)

HSP 1 Score: 51.9878 bits (123), Expect = 7.035e-7
Identity = 70/308 (22.73%), Postives = 144/308 (46.75%), Query Frame = 1
Query:  319 LESNLTFYIILIPLMIVEFVYGVLLIGSVFSTIECSPKFTIVYCLMCLTNSFCYMVFLIDTNKSIEFGEDWKLNFTNFSTLLFAISNIFMFTFLQFHLDQSRVFMSIMGKSTDLCL--NQNITSGDTILGMVNRLFLQMFAVMFKVFLISGIASITFFYQPLLRYYKHLQRFKNNP-----PSILTLDQSQWPSKVISVFLMLGITSIVTLYIFSPKQWYNIFLATANI-------LSCLMEVLMVFVLIDWPDKGESFKHIE-VLLFLGLFGHLTKEISQLQYFIYNAR-------ESYRTIKIIKS 1176
            LE  L FY+I +P++ +  + G+ +I   ++  +      I+Y  + +   F +++ +ID N   + GE+W +N+ N  T++  ++++ +   L   +  +  F + M ++T + L  N N T  D        +FL+  AV     +   +  I F   PL R   HL RFK         ++L++++    +   +V + L    IV L ++  +    + +A+  I       +SCL+ +++  + I        + +++ +L++LG FG  + +I+ +   IYN +       ES + I I+ S
Sbjct:   90 LEQPLIFYLICLPMLFISLM-GLFVIIFHYTFEKSGTSTNILYFALVIFEYFLFIILVIDINGFSDTGEEWFMNYFNSMTIIITMTSVMIQICLNIIMILTDDFTNTMNRTTFVSLFSNHNFTIFDKTCYR-TLVFLKKRAV-----ITLSLVFIPFLVIPLKRNLTHLFRFKPKEDLPEDKTVLSMNKVSSITGGFTVGVFLTFIVIVHL-LYVMQNVPQVIIASRIIKLLVSFFISCLLGIMITEIKISARLNSSQYLNVKNILIYLGAFGQFSVQITNIVVNIYNLQTNGNGLFESTKDILILTS 389          
The following BLAST results are available for this feature:
BLAST of SMED30016933 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016933 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016933 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016933 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016933 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016933 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016933 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016933 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016933 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016933 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016933 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016933 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016933 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016933 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000065836.10.000e+098.96SMESG000065836.1[more]
SMESG000009259.12.452e-3329.38SMESG000009259.1[more]
SMESG000062817.17.742e-1624.16SMESG000062817.1[more]
SMESG000051898.14.791e-1126.62SMESG000051898.1[more]
SMESG000025344.17.035e-722.73SMESG000025344.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30016933 ID=SMED30016933|Name=SMED30016933|organism=Schmidtea mediterranea sexual|type=transcript|length=1547bp
TATATTTATAATTATTATTCATTTCAATCGAGATTCTGGATGTAAATGGA
TATCAGTGAAAGAAACTATCGAATTCAAAAGCTTCGACATTTGAAAGAGA
TTTACATTTATAACTTGCTTGTATTTTTCATATCCATTGGACTGGTCCAT
TCGGTGAGTTGGATGGCGATGAAAGTCGACTCAGATATTCATCATCTTCG
CCGCTTCAGCAACACTGCCTCTGCTTTCGGCAGTTTGCCTTTTTCCATAA
ATGTGTTTCTAATATTGTACAATTTCTACAACAATTATAAATTTAGGAAT
TTCTTCTTCCGATCAACCCTTGAAAGTAATTTGACGTTTTACATTATCCT
CATTCCTCTAATGATTGTTGAATTTGTCTACGGGGTCCTGTTGATTGGTT
CGGTGTTTTCCACAATAGAATGCAGTCCAAAATTTACAATTGTATATTGT
CTAATGTGCTTGACAAATTCCTTCTGTTATATGGTCTTCCTCATAGATAC
AAACAAGTCCATAGAATTTGGGGAAGACTGGAAACTGAATTTCACCAATT
TCTCCACACTTCTGTTTGCGATATCGAATATTTTCATGTTTACATTTCTA
CAGTTTCATCTCGATCAGAGTCGAGTCTTTATGAGTATCATGGGCAAGTC
AACGGATCTATGCTTGAATCAAAACATCACGTCGGGGGATACGATTTTGG
GAATGGTGAATAGACTATTTCTTCAAATGTTTGCTGTTATGTTTAAAGTA
TTTCTAATTTCAGGAATCGCTTCTATTACGTTCTTTTATCAACCCCTGCT
AAGGTATTACAAGCATTTGCAAAGGTTTAAAAACAATCCTCCATCCATTC
TCACACTGGATCAGTCACAATGGCCTTCAAAGGTTATTTCAGTCTTTTTA
ATGCTTGGAATTACTTCAATAGTGACATTATATATCTTCTCTCCAAAACA
GTGGTATAATATATTTTTGGCCACTGCCAACATTTTGTCCTGTCTCATGG
AGGTGCTAATGGTTTTTGTTTTAATTGACTGGCCAGATAAGGGGGAATCT
TTCAAGCATATAGAAGTTTTATTATTTCTAGGACTTTTTGGCCATTTAAC
TAAGGAAATTAGCCAGCTTCAATATTTCATCTACAATGCTAGAGAATCTT
ACAGAACCATAAAGATCATAAAATCCCTTTCAGAAATCTTGAATAATATG
TTGATGAATATTTTCTTGTCGTCATTGTTGAGGAAACGATGGCATAACAA
TAGGAAATTATTTTGGATAATTGTGTCAGTTCTGGTACTGATTCAGAATT
TCGGGTACGTCTTTGATGAATTATATGGAAAGAAAAAGGAATTTAATGGA
GATTTTAAAGAAGAATTATCCTATACCATTTTGAATTCGATTGGACTTGG
GTTTTTCTTTTTATATCGATACATTATTTTTATAATTTTGATAAGTTTCC
TTTTATTTCTATCTTTTCCTGCAACGTTTTCAAAATTAGTGCTGTAATAA
GGTTTGATTTAATAAAAGCCTTAACTTCTTGTTTTGCAATATAATTC
back to top

protein sequence of SMED30016933-orf-1

>SMED30016933-orf-1 ID=SMED30016933-orf-1|Name=SMED30016933-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=484bp
MDISERNYRIQKLRHLKEIYIYNLLVFFISIGLVHSVSWMAMKVDSDIHH
LRRFSNTASAFGSLPFSINVFLILYNFYNNYKFRNFFFRSTLESNLTFYI
ILIPLMIVEFVYGVLLIGSVFSTIECSPKFTIVYCLMCLTNSFCYMVFLI
DTNKSIEFGEDWKLNFTNFSTLLFAISNIFMFTFLQFHLDQSRVFMSIMG
KSTDLCLNQNITSGDTILGMVNRLFLQMFAVMFKVFLISGIASITFFYQP
LLRYYKHLQRFKNNPPSILTLDQSQWPSKVISVFLMLGITSIVTLYIFSP
KQWYNIFLATANILSCLMEVLMVFVLIDWPDKGESFKHIEVLLFLGLFGH
LTKEISQLQYFIYNARESYRTIKIIKSLSEILNNMLMNIFLSSLLRKRWH
NNRKLFWIIVSVLVLIQNFGYVFDELYGKKKEFNGDFKEELSYTILNSIG
LGFFFLYRYIIFIILISFLLFLSFPATFSKLVL*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0003104enteric muscle cell
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR001627Semap_dom
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 57..79
NoneNo IPR availableTMHMMTMhelixcoord: 305..327
NoneNo IPR availableTMHMMTMhelixcoord: 280..299
NoneNo IPR availableTMHMMTMhelixcoord: 130..152
NoneNo IPR availableTMHMMTMhelixcoord: 98..120
NoneNo IPR availableTMHMMTMhelixcoord: 454..476
NoneNo IPR availableTMHMMTMhelixcoord: 225..247
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
NoneNo IPR availableTMHMMTMhelixcoord: 165..187
NoneNo IPR availableTMHMMTMhelixcoord: 405..423