Parkin coregulated protein

Overview
NameParkin coregulated protein
Smed IDSMED30016922
Length (bp)858
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Parkin coregulated protein (SMED30016922) t-SNE clustered cells

Violin plots show distribution of expression levels for Parkin coregulated protein (SMED30016922) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Parkin coregulated protein (SMED30016922) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Parkin coregulated protein (SMED30016922) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30016922

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 15

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30016922SMESG000000577.1 SmedASXL_006900SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
pharynxSMED30016922SMESG000000577.1 dd_Smed_v4_3899_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30016922SMESG000000577.1 dd_Smed_v4_3899_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30016922SMESG000000577.1 dd_Smed_v4_3899_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30016922SMESG000000577.1 dd_Smed_v4_3899_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30016922SMESG000000577.1 dd_Smed_v4_3899_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30016922SMESG000000577.1 dd_Smed_v4_3899_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
cilated neuronSMED30016922SMESG000000577.1 dd_Smed_v4_3899_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30016922SMESG000000577.1 Contig19014newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30016922SMESG000000577.1 Contig19014uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30016922SMESG000000577.1 Contig52645newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30016922SMESG000000577.1 Contig52645uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
head regionSMED30016922SMESG000000577.1 dd_Smed_v6_3899_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
epidermisSMED30016922SMESG000000577.1 dd_Smed_v4_3899_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
ciliated epithelial cellSMED30016922SMESG000000577.1 dd_Smed_v4_3899_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Parkin coregulated protein vs. Ensembl Human
Match: PACRG (parkin coregulated [Source:HGNC Symbol;Acc:HGNC:19152])

HSP 1 Score: 305.834 bits (782), Expect = 1.939e-104
Identity = 158/216 (73.15%), Postives = 179/216 (82.87%), Query Frame = 2 
Query:  128 AFTPISLTRQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCML 775
             FT  ++ +   V  PP AGAFKE  T P+ FR FYERGDFPIAL HD+KGNKIAWKVEIEKLDYHHYLPLFFDGL E   PYEFFARQG+HDMLEHGG+KILPV+PQLIIPIK ALN RN +V C  LKVLQHLV+S +++G+ALVPYYRQILP+LN F N N N GDGI YSQQKREN+GDLI ETL+ FE YGGE+A+INIKY+VP YESC+L
Sbjct:   41 GFTVKAMMKNSVVRGPPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAEMVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLL 256
[Close]
BLAST of Parkin coregulated protein vs. Ensembl Human
Match: PACRG (parkin coregulated [Source:HGNC Symbol;Acc:HGNC:19152])

HSP 1 Score: 305.834 bits (782), Expect = 1.939e-104
Identity = 158/216 (73.15%), Postives = 179/216 (82.87%), Query Frame = 2 
Query:  128 AFTPISLTRQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCML 775
             FT  ++ +   V  PP AGAFKE  T P+ FR FYERGDFPIAL HD+KGNKIAWKVEIEKLDYHHYLPLFFDGL E   PYEFFARQG+HDMLEHGG+KILPV+PQLIIPIK ALN RN +V C  LKVLQHLV+S +++G+ALVPYYRQILP+LN F N N N GDGI YSQQKREN+GDLI ETL+ FE YGGE+A+INIKY+VP YESC+L
Sbjct:   41 GFTVKAMMKNSVVRGPPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAEMVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLL 256
[Close]
BLAST of Parkin coregulated protein vs. Ensembl Human
Match: PACRG (parkin coregulated [Source:HGNC Symbol;Acc:HGNC:19152])

HSP 1 Score: 286.96 bits (733), Expect = 2.455e-96
Identity = 158/255 (61.96%), Postives = 179/255 (70.20%), Query Frame = 2 
Query:  128 AFTPISLTRQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNE---------------------------------------NLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCML 775
             FT  ++ +   V  PP AGAFKE  T P+ FR FYERGDFPIAL HD+KGNKIAWKVEIEKLDYHHYLPLFFDGL E   PYEFFARQG+HDMLEHGG+KILPV+PQLIIPIK ALN RN +V C  LKVLQHLV+S +++G+ALVPYYRQILP+LN F N N                                        N GDGI YSQQKREN+GDLI ETL+ FE YGGE+A+INIKY+VP YESC+L
Sbjct:   41 GFTVKAMMKNSVVRGPPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAEMVGKALVPYYRQILPVLNIFKNMNGSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVAEIIVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLL 295
[Close]
BLAST of Parkin coregulated protein vs. Ensembl Human
Match: PACRG (parkin coregulated [Source:HGNC Symbol;Acc:HGNC:19152])

HSP 1 Score: 170.629 bits (431), Expect = 4.522e-53
Identity = 93/118 (78.81%), Postives = 104/118 (88.14%), Query Frame = 2 
Query:  266 HDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKN 619
            HD+KGNKIAWKVEIEKLDYHHYLPLFFDGL E   PYEFFARQG+HDMLEHGG+KILPV+PQLIIPIK ALN RN +V C  LKVLQHLV+S +++G+ALVPYYRQILP+LN F N N
Sbjct:    3 HDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAEMVGKALVPYYRQILPVLNIFKNMN 120
[Close]
BLAST of Parkin coregulated protein vs. Ensembl Human
Match: PACRG (parkin coregulated [Source:HGNC Symbol;Acc:HGNC:19152])

HSP 1 Score: 160.229 bits (404), Expect = 4.327e-49
Identity = 89/120 (74.17%), Postives = 100/120 (83.33%), Query Frame = 2 
Query:  290 AWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYS 649
            +WKVEIEKLDYHHYLPLFFDGL E   PYEFFARQG+HDMLEHGG+KILPV+PQLIIPIK ALN RN +V C  LKVLQHLV+S +++G+ALVPYYRQILP+LN F N N     GI YS
Sbjct:    1 SWKVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAEMVGKALVPYYRQILPVLNIFKNMNGESAPGIDYS 120
[Close]
BLAST of Parkin coregulated protein vs. Ensembl Celegans
Match: pcrg-1 (Parkin Co-Regulated Gene (PACRG) homolog [Source:UniProtKB/TrEMBL;Acc:Q19060])

HSP 1 Score: 83.5741 bits (205), Expect = 1.636e-18
Identity = 62/197 (31.47%), Postives = 95/197 (48.22%), Query Frame = 2 
Query:  215 SQFRLFYERGDFPIALMHD----TKGNKIAWKVEIEKLDYH---HYLPLFFDGLSETEHPYEFFARQGVHDML-----EHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESC 769
            SQFR  + RGD  + ++H      K  ++ W  +  ++      + L  F  G+S  +HPY F A  G+ D+L           +LP + + I     + +    K C   LK L  +      IG  LVP+YRQ+LP L T + ++ +  D + Y   K   + ++I  TL   E  GG +A INIKY++P YESC
Sbjct:  102 SQFRALFSRGDLHVRIIHSGGAGEKPRELRWAKDPSQMKNETICNLLAKFSTGMSLLDHPYRFVAETGITDLLIALRNHQSIVTVLPQLVRGIRAGLYSFDIEKKKFC---LKTLSRITAMQG-IGAQLVPFYRQLLPPLRT-VRQSRSRSDRVHY--DKGRQIEEIITSTLNDLERSGGPNALINIKYLLPHYESC 291
[Close]
BLAST of Parkin coregulated protein vs. Ensembl Fly
Match: CG15120 (gene:FBgn0034454 transcript:FBtr0086463)

HSP 1 Score: 223.787 bits (569), Expect = 8.704e-72
Identity = 117/185 (63.24%), Postives = 146/185 (78.92%), Query Frame = 2 
Query:  221 FRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCML 775
            FR++++RGD PI + +   G+KI W V+IEKLDY  YLPLFFDGL+ET+HPY+ +ARQGV D+L  GG KI PVIPQLI+P+K AL+ RN +V CT LK++Q LV+S+DL+G ALVP+YRQ+LP+ N F  KN N GD I Y+Q+   NLGDLI ETLQV E +GGEDA+INIKYMVP YESC L
Sbjct:  123 FRMYFDRGDLPIKMEYLCGGDKIGWTVDIEKLDYSLYLPLFFDGLAETKHPYKTYARQGVTDLLLAGGEKIHPVIPQLILPLKNALSTRNLEVMCTTLKIIQQLVMSSDLVGPALVPFYRQLLPMFNAFKVKNLNCGDEIDYAQKNNLNLGDLIDETLQVLELHGGEDAFINIKYMVPTYESCYL 307
[Close]
BLAST of Parkin coregulated protein vs. Ensembl Fly
Match: CG17349 (gene:FBgn0032771 transcript:FBtr0081198)

HSP 1 Score: 142.51 bits (358), Expect = 1.119e-40
Identity = 85/219 (38.81%), Postives = 129/219 (58.90%), Query Frame = 2 
Query:  128 AFTPISLTRQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIAL------MHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYES 766
            AFT  +L     V  PPK   FK      + F++++ RGD P  +         TK   + W    E LDY +YLP+F DGL++ ++     A  G  D++     K+LPV+P+LI+P+K+A   R+ ++  + L+V+Q +V     +G+ALVP+YRQ+L + N + N N NLG+GI   +  R  +GD+I +TL++ E  GG +A+INIKYMVP YES
Sbjct:   36 AFTFQALQPNTVVKPPPKIDIFKRKPVKETVFKIYFNRGDIPCVMSGRSSKQDPTKERPVKWHCVPENLDYCYYLPIFVDGLADMDYDTRLLAVNGAIDLIMRSPKKVLPVLPKLILPLKRAFQTRDKRIIISALQVIQLMVRLGPCVGQALVPFYRQLLAVCNLYKNINVNLGEGIDPDRNCR--IGDVIEDTLKLLEYCGGPNAFINIKYMVPTYES 252
[Close]
BLAST of Parkin coregulated protein vs. Ensembl Zebrafish
Match: pacrg (PARK2 co-regulated [Source:ZFIN;Acc:ZDB-GENE-041114-100])

HSP 1 Score: 318.931 bits (816), Expect = 4.586e-110
Identity = 167/231 (72.29%), Postives = 189/231 (81.82%), Query Frame = 2 
Query:   83 KDFSKIKKQRGKSDFAFTPISLTRQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCML 775
            + F  + K   K+   FT +S  +   V  PP AGAF+E    P+ FR FYERGDFPIAL HD+KGN+IAWKVEIEKLDYHHYLPLFFDGL ET HPYEFFARQG+HDMLEHGG+K+LPVIPQLIIPIK ALN RN +V CT LKVLQHLV+S +++GEALVPYYRQILPILN F N N+N GDGI YSQQKREN+GDLI ETL+VFE YGGEDA+INIKYMVP YESC+L
Sbjct:    6 RTFEPLAKGELKTQ-GFTVMSTMKNSVVVGPPAAGAFRERPAKPTAFRKFYERGDFPIALEHDSKGNRIAWKVEIEKLDYHHYLPLFFDGLCETVHPYEFFARQGIHDMLEHGGNKVLPVIPQLIIPIKNALNTRNRQVICTTLKVLQHLVVSAEMVGEALVPYYRQILPILNIFKNMNKNSGDGIDYSQQKRENIGDLIQETLEVFERYGGEDAFINIKYMVPTYESCLL 235
[Close]
BLAST of Parkin coregulated protein vs. Ensembl Xenopus
Match: ikzf3 (IKAROS family zinc finger 3 [Source:Xenbase;Acc:XB-GENE-994462])

HSP 1 Score: 315.849 bits (808), Expect = 1.154e-108
Identity = 169/228 (74.12%), Postives = 185/228 (81.14%), Query Frame = 2 
Query:   92 SKIKKQRGKSDFAFTPISLTRQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCML 775
            S  K ++  S+  FT  ++ +   V  PP AGAFKE    P+ FR FYERGDFPIAL HDTKGNKIAWKVEIEKLDYHHYLPLFFDGL ET HPYEFFARQGVHDMLEHGG KILPVIPQLIIPIK ALN RN +V CT LKVLQHLV+S D++GEALVPYYRQILPI N F N N N GDGI YSQQKREN+GDLI ETL+ FE +GGEDA+INIKYMVP YESC+L
Sbjct:   13 SNSKGKKSDSE-GFTVKAMMKNSIVRGPPAAGAFKERPAKPTAFRKFYERGDFPIALEHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLCETTHPYEFFARQGVHDMLEHGGPKILPVIPQLIIPIKNALNIRNRQVICTTLKVLQHLVVSADMVGEALVPYYRQILPIFNIFKNVNINSGDGIDYSQQKRENIGDLIQETLEAFERHGGEDAFINIKYMVPTYESCLL 239
[Close]
BLAST of Parkin coregulated protein vs. Ensembl Xenopus
Match: pacrgl (parkin coregulated like [Source:NCBI gene;Acc:100037918])

HSP 1 Score: 60.4622 bits (145), Expect = 2.473e-10
Identity = 48/192 (25.00%), Postives = 82/192 (42.71%), Query Frame = 2 
Query:  191 FKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYES 766
            F E    PS F   Y RG  P  L+H +  + + W+   E + +   L    +GL ET HPY F +++G  ++L   G+K   +     +          H       + L  LV  + ++G +L  + +Q+L  ++  + +        +Y +Q        I   LQ  E YGG+++   IK  +P Y S
Sbjct:   50 FAEPRRSPSAFSAVYSRGGIPCRLVHGSVKHNLQWERLPETIPFDPLLITLAEGLKETRHPYTFVSQEGFKELLMVPGAKEKVLPILPKVTAALK-GALAHSDGSVFERGLNALVQLSAIVGPSLNIHLKQLLTSISKRLMEK-------TYKEQ--------ITAALQELEQYGGKESLGIIKSKIPTYCS 225
[Close]
BLAST of Parkin coregulated protein vs. Ensembl Xenopus
Match: pacrgl (parkin coregulated like [Source:NCBI gene;Acc:100037918])

HSP 1 Score: 56.225 bits (134), Expect = 9.486e-9
Identity = 45/195 (23.08%), Postives = 83/195 (42.56%), Query Frame = 2 
Query:  191 FKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCML 775
            F E    PS F   Y RG  P  L+H +  + + W+   E + +   L    +GL ET HPY F +++G  ++L   G+K   +     +          H       + L  LV  + ++G +L  + +Q+L  ++  + +        +Y +Q        I   LQ  E YGG+     + Y++  ++ C++
Sbjct:   50 FAEPRRSPSAFSAVYSRGGIPCRLVHGSVKHNLQWERLPETIPFDPLLITLAEGLKETRHPYTFVSQEGFKELLMVPGAKEKVLPILPKVTAALK-GALAHSDGSVFERGLNALVQLSAIVGPSLNIHLKQLLTSISKRLMEK-------TYKEQ--------ITAALQELEQYGGK--VCKLHYLLSAFQWCVV 226
[Close]
BLAST of Parkin coregulated protein vs. Ensembl Mouse
Match: Pacrg (PARK2 co-regulated [Source:MGI Symbol;Acc:MGI:1916560])

HSP 1 Score: 305.834 bits (782), Expect = 8.790e-105
Identity = 160/227 (70.48%), Postives = 183/227 (80.62%), Query Frame = 2 
Query:   95 KIKKQRGKSDFAFTPISLTRQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCML 775
            ++ + R      FT  ++ +   V  PP AGAFKE    P+ FR  YERGDFPIAL HD+KGNKIAWKVEIEKLDYHHYLPLFFDGLSE   PYEFFAR+G+HDMLEHGG+KILPVIPQLIIPIK ALN RN ++ C  LKVLQHLV+S++++GEAL+PYYRQILPILN F N N N GDGI YSQQKREN+GDLI ETL+ FE YGGEDA+INIKYMVP YESC+L
Sbjct:   14 QVHQPRSLVSEGFTVKAMMKNSVVRGPPVAGAFKERPAKPTTFRKCYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLSEMTFPYEFFARRGIHDMLEHGGNKILPVIPQLIIPIKNALNLRNRQIICVTLKVLQHLVVSSEMVGEALLPYYRQILPILNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGEDAFINIKYMVPTYESCLL 240
[Close]
BLAST of Parkin coregulated protein vs. Ensembl Mouse
Match: 5730480H06Rik (RIKEN cDNA 5730480H06 gene [Source:MGI Symbol;Acc:MGI:1917842])

HSP 1 Score: 59.6918 bits (143), Expect = 4.447e-10
Identity = 49/206 (23.79%), Postives = 86/206 (41.75%), Query Frame = 2 
Query:  152 RQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQ-HLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYES 766
            R  D   P     F E    P+ F   Y +G  P  L+H +  +++ W+   E L +   L    +GL ET+HPY F +++G  ++L   G+                  ++   +   ++ VL+  LV S+D + E  +    Q+  ++   +N +  L       +   +   + I   LQ  E +GG  + I IK  +P Y S
Sbjct:   57 RPSDKLNPKTINPFGEQPRAPTAFAAIYSQGGIPCRLVHGSVKHRLQWECPPEILPFDPLLITLAEGLRETKHPYTFVSKEGFRELLLVKGAP-----------------EKAIPLLPRLIPVLKAALVHSDDEVFERGLSALVQLSVVVGPSLNGHLKLLLTSLSKRLMDKKFKEPITSALQKLEQHGGNASLIIIKSKIPTYCS 245
[Close]
BLAST of Parkin coregulated protein vs. Ensembl Mouse
Match: 5730480H06Rik (RIKEN cDNA 5730480H06 gene [Source:MGI Symbol;Acc:MGI:1917842])

HSP 1 Score: 59.6918 bits (143), Expect = 4.447e-10
Identity = 49/206 (23.79%), Postives = 86/206 (41.75%), Query Frame = 2 
Query:  152 RQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQ-HLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYES 766
            R  D   P     F E    P+ F   Y +G  P  L+H +  +++ W+   E L +   L    +GL ET+HPY F +++G  ++L   G+                  ++   +   ++ VL+  LV S+D + E  +    Q+  ++   +N +  L       +   +   + I   LQ  E +GG  + I IK  +P Y S
Sbjct:   57 RPSDKLNPKTINPFGEQPRAPTAFAAIYSQGGIPCRLVHGSVKHRLQWECPPEILPFDPLLITLAEGLRETKHPYTFVSKEGFRELLLVKGAP-----------------EKAIPLLPRLIPVLKAALVHSDDEVFERGLSALVQLSVVVGPSLNGHLKLLLTSLSKRLMDKKFKEPITSALQKLEQHGGNASLIIIKSKIPTYCS 245
[Close]
BLAST of Parkin coregulated protein vs. UniProt/SwissProt
Match: sp|Q9DAK2|PACRG_MOUSE (Parkin coregulated gene protein homolog OS=Mus musculus OX=10090 GN=Pacrg PE=1 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 6.149e-104
Identity = 160/227 (70.48%), Postives = 183/227 (80.62%), Query Frame = 2 
Query:   95 KIKKQRGKSDFAFTPISLTRQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCML 775
            ++ + R      FT  ++ +   V  PP AGAFKE    P+ FR  YERGDFPIAL HD+KGNKIAWKVEIEKLDYHHYLPLFFDGLSE   PYEFFAR+G+HDMLEHGG+KILPVIPQLIIPIK ALN RN ++ C  LKVLQHLV+S++++GEAL+PYYRQILPILN F N N N GDGI YSQQKREN+GDLI ETL+ FE YGGEDA+INIKYMVP YESC+L
Sbjct:   14 QVHQPRSLVSEGFTVKAMMKNSVVRGPPVAGAFKERPAKPTTFRKCYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLSEMTFPYEFFARRGIHDMLEHGGNKILPVIPQLIIPIKNALNLRNRQIICVTLKVLQHLVVSSEMVGEALLPYYRQILPILNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGEDAFINIKYMVPTYESCLL 240
[Close]
BLAST of Parkin coregulated protein vs. UniProt/SwissProt
Match: sp|Q96M98|PACRG_HUMAN (Parkin coregulated gene protein OS=Homo sapiens OX=9606 GN=PACRG PE=1 SV=2)

HSP 1 Score: 286.96 bits (733), Expect = 1.179e-95
Identity = 158/255 (61.96%), Postives = 179/255 (70.20%), Query Frame = 2 
Query:  128 AFTPISLTRQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNE---------------------------------------NLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCML 775
             FT  ++ +   V  PP AGAFKE  T P+ FR FYERGDFPIAL HD+KGNKIAWKVEIEKLDYHHYLPLFFDGL E   PYEFFARQG+HDMLEHGG+KILPV+PQLIIPIK ALN RN +V C  LKVLQHLV+S +++G+ALVPYYRQILP+LN F N N                                        N GDGI YSQQKREN+GDLI ETL+ FE YGGE+A+INIKY+VP YESC+L
Sbjct:   41 GFTVKAMMKNSVVRGPPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAEMVGKALVPYYRQILPVLNIFKNMNGSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVAEIIVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLL 295
[Close]
BLAST of Parkin coregulated protein vs. UniProt/SwissProt
Match: sp|Q9D3X5|PACRL_MOUSE (PACRG-like protein OS=Mus musculus OX=10090 GN=Pacrgl PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 3.110e-9
Identity = 49/206 (23.79%), Postives = 86/206 (41.75%), Query Frame = 2 
Query:  152 RQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQ-HLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYES 766
            R  D   P     F E    P+ F   Y +G  P  L+H +  +++ W+   E L +   L    +GL ET+HPY F +++G  ++L   G+                  ++   +   ++ VL+  LV S+D + E  +    Q+  ++   +N +  L       +   +   + I   LQ  E +GG  + I IK  +P Y S
Sbjct:   57 RPSDKLNPKTINPFGEQPRAPTAFAAIYSQGGIPCRLVHGSVKHRLQWECPPEILPFDPLLITLAEGLRETKHPYTFVSKEGFRELLLVKGAP-----------------EKAIPLLPRLIPVLKAALVHSDDEVFERGLSALVQLSVVVGPSLNGHLKLLLTSLSKRLMDKKFKEPITSALQKLEQHGGNASLIIIKSKIPTYCS 245
[Close]
BLAST of Parkin coregulated protein vs. UniProt/SwissProt
Match: sp|Q8N7B6|PACRL_HUMAN (PACRG-like protein OS=Homo sapiens OX=9606 GN=PACRGL PE=1 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 5.007e-9
Identity = 54/210 (25.71%), Postives = 90/210 (42.86%), Query Frame = 2 
Query:  152 RQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQ-HLVLSNDLIGE----ALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYES 766
            R  D   P     F E +  PS F   Y +G  P  L+H +  +++ W+   E L +   L    +GL ET+HPY F +++G  ++L   G+                  ++   +   ++ VL+  LV S+D + E    ALV     + P LN  +   ++L   +S     ++   + I   LQ  E +GG  +   IK  +P Y S
Sbjct:   57 RPSDKLNPKTINPFGEQSRVPSAFAAIYSKGGIPCRLVHGSVKHRLQWECPPESLSFDPLLITLAEGLRETKHPYTFVSKEGFRELLLVKGAP-----------------EKAIPLLPRLIPVLKAALVHSDDEVFERGLNALVQLSVVVGPSLNDHL---KHLLTSLSKRLMDKK-FKEPITSALQKLEQHGGSGSLSIIKSKIPTYCS 245
[Close]
BLAST of Parkin coregulated protein vs. TrEMBL
Match: A0A1I8HRC5 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig025142g1 PE=4 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 5.215e-119
Identity = 182/218 (83.49%), Postives = 196/218 (89.91%), Query Frame = 2 
Query:  128 AFTPISLTRQIDVGAPPKAGAFKETT-TPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCMLQ 778
            AFT  +L R ++VGAPP++GAF+E   + P+QFR FYERGDFPIAL  DTKGNKIAWKVEIEKLDYHHYLPLFF+GL+ETEHPYEFFARQGVHDMLEHGGSKILPVIPQLIIPIK ALN RN KVCCTVLK LQHLV+S D+IGEALVPYYRQILPILN FINKNENLGDGI YSQQKRENLGDLIHETL  FE +GGEDA+INIKYMVP YESCMLQ
Sbjct:   16 AFTTQALQRNVNVGAPPRSGAFQEKCRSQPTQFRKFYERGDFPIALEFDTKGNKIAWKVEIEKLDYHHYLPLFFEGLAETEHPYEFFARQGVHDMLEHGGSKILPVIPQLIIPIKNALNTRNQKVCCTVLKALQHLVVSADMIGEALVPYYRQILPILNAFINKNENLGDGIDYSQQKRENLGDLIHETLNAFEIHGGEDAFINIKYMVPTYESCMLQ 233
[Close]
BLAST of Parkin coregulated protein vs. TrEMBL
Match: A0A4Z2CWM5 (Parkin coregulated protein OS=Schistosoma japonicum OX=6182 GN=EWB00_006967 PE=4 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 4.274e-118
Identity = 179/235 (76.17%), Postives = 206/235 (87.66%), Query Frame = 2 
Query:   80 RKDFSKIK-KQRGKSDFAFTPISLTRQIDVGAPPKAGAFKETTTP-PSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCMLQ 778
            R +++K K K     +FAF P++ TRQIDVG+PPKAGAF   T    +QFR+FY RGDFPIAL HD+KGNKIAWKVEIEKLDYHHYLPLFF+GL+ETEHPYEFFARQGVHD+LEHGG+KILPVIPQLIIPIK ALN R HKVCCTVLK +QHL +S ++IGEALVPYYRQ+LP++NTFINKN+NLGDGI YSQQKRENLGDL+HETLQ+ E +GGE+A+INIKYMVP YESCMLQ
Sbjct:   10 RDNYAKRKVKDHCCPEFAFKPVAFTRQIDVGSPPKAGAFTHRTLKCDTQFRIFYNRGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFEGLAETEHPYEFFARQGVHDLLEHGGNKILPVIPQLIIPIKSALNLRQHKVCCTVLKAIQHLAVSGEMIGEALVPYYRQLLPVMNTFINKNKNLGDGIDYSQQKRENLGDLVHETLQILEMHGGENAFINIKYMVPTYESCMLQ 244
[Close]
BLAST of Parkin coregulated protein vs. TrEMBL
Match: A0A5J4N7H8 (Uncharacterized protein OS=Paragonimus westermani OX=34504 GN=DEA37_0003781 PE=4 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 6.842e-117
Identity = 171/230 (74.35%), Postives = 200/230 (86.96%), Query Frame = 2 
Query:   92 SKIKKQRGKSDFAFTPISLTRQIDVGAPPKAGAFKETTTP-PSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCMLQ 778
             +I+ QR    FAF+P+S  + ++VG PP +GAF E      +QFR+FYERGDFP AL HD+KGNKIAWKVEIEKLDYH+YLPLFF+GL+ETEHPYEFFARQGVHD+LEHGG +IL V+PQLIIPIK+ALN RNHKVCCTVLK LQHL++S D+IGEALVPYYRQILP+LNTFINKN NLGDGI YSQQKRENLGDL+HETLQ+ E +GGE+A+INIKYM+P YESC+LQ
Sbjct:    7 QRIRNQRDPQRFAFSPVSFYKYVNVGGPPNSGAFAEKPLKHMTQFRIFYERGDFPFALEHDSKGNKIAWKVEIEKLDYHYYLPLFFEGLAETEHPYEFFARQGVHDLLEHGGGRILSVVPQLIIPIKRALNLRNHKVCCTVLKALQHLIVSEDMIGEALVPYYRQILPVLNTFINKNRNLGDGIDYSQQKRENLGDLVHETLQLMEKHGGENAFINIKYMIPTYESCILQ 236
[Close]
BLAST of Parkin coregulated protein vs. TrEMBL
Match: A0A183P1D6 (Uncharacterized protein OS=Schistosoma mattheei OX=31246 GN=SMTD_LOCUS8172 PE=4 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 1.990e-116
Identity = 175/244 (71.72%), Postives = 209/244 (85.66%), Query Frame = 2 
Query:   50 NMALVENNHSRKDFSKIKKQRGKSDFAFTPISLTRQIDVGAPPKAGAFKETTTP-PSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCMLQ 778
             ++ V +NH+++       +    +FAF P++ TR+IDVG+PPKAGAF        +QF++FY RGDFPIAL HD+KGNKIAWKVEIEKLDYHHYLPLFF+GL+ETEHPYEFFARQGVHD+LEHGG+KILPVIPQLIIPIK ALN R HKVCCTVLK +QHLV+S ++IGEALVPYYRQ+LP++NTFINKN+NLGDGI YSQQKRENLGDL+HETL++ E +GGE+A+INIKYMVP YESCMLQ
Sbjct:    5 TLSPVRDNHAKRKLV----EHCCPEFAFKPVAFTRKIDVGSPPKAGAFMHRLLKYDTQFKIFYNRGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFEGLAETEHPYEFFARQGVHDLLEHGGNKILPVIPQLIIPIKSALNLRQHKVCCTVLKAIQHLVVSGEMIGEALVPYYRQLLPVMNTFINKNKNLGDGIDYSQQKRENLGDLVHETLEILEMHGGENAFINIKYMVPTYESCMLQ 244
[Close]
BLAST of Parkin coregulated protein vs. TrEMBL
Match: A0A094ZVU8 (Parkin coregulated gene protein-like protein OS=Schistosoma haematobium OX=6185 GN=MS3_07449 PE=4 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 6.276e-116
Identity = 175/244 (71.72%), Postives = 208/244 (85.25%), Query Frame = 2 
Query:   50 NMALVENNHSRKDFSKIKKQRGKSDFAFTPISLTRQIDVGAPPKAGAFKETTTP-PSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCMLQ 778
             ++ V +NH+++            +FAF P++ TR+IDVG+PPKAGAF        +QF++FY RGDFPIAL HD+KGNKIAWKVEIEKLDYHHYLPLFF+GL+ETEHPYEFFARQGVHD+LEHGG+KILPVIPQLIIPIK ALN R HKVCCTVLK +QHLV+S ++IGEALVPYYRQ+LP++NTFINKN+NLGDGI YSQQKRENLGDL+HETL++ E +GGE+A+INIKYMVP YESCMLQ
Sbjct:    5 TLSPVRDNHAKRKLV----DHCCPEFAFKPVAFTRKIDVGSPPKAGAFMHRLLKCDTQFKIFYNRGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFEGLAETEHPYEFFARQGVHDLLEHGGNKILPVIPQLIIPIKSALNLRQHKVCCTVLKAIQHLVVSGEMIGEALVPYYRQLLPVMNTFINKNKNLGDGIDYSQQKRENLGDLVHETLEILEMHGGENAFINIKYMVPTYESCMLQ 244
[Close]
BLAST of Parkin coregulated protein vs. Ensembl Cavefish
Match: pacrg (parkin coregulated [Source:NCBI gene;Acc:103030614])

HSP 1 Score: 311.612 bits (797), Expect = 3.647e-107
Identity = 166/216 (76.85%), Postives = 180/216 (83.33%), Query Frame = 2 
Query:  128 AFTPISLTRQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCML 775
             FT  S  +   V  PP AGAF+E    P+ FR FYERGDFPIAL HDTKGN+IAWK+EIEKLDY HYLPLFFDGL ET HP EFFARQGVHDMLEHGG+KILPVIPQLIIPIK ALN RN +V CT LKVLQHLV+S +L+GEALVPYYRQILPILN F NKN N GDGI YSQQKREN+GDLI ETL+VFE YGGEDA+INIKYMVP YESC+L
Sbjct:   20 GFTVKSTMKNSVVVGPPAAGAFRERPYKPTSFRKFYERGDFPIALEHDTKGNRIAWKMEIEKLDYFHYLPLFFDGLCETVHPCEFFARQGVHDMLEHGGTKILPVIPQLIIPIKNALNTRNLQVICTTLKVLQHLVISGELVGEALVPYYRQILPILNIFKNKNLNSGDGIDYSQQKRENVGDLIQETLEVFERYGGEDAFINIKYMVPTYESCLL 235
[Close]
BLAST of Parkin coregulated protein vs. Ensembl Sea Lamprey
Match: PACRGL (parkin coregulated like [Source:HGNC Symbol;Acc:HGNC:28442])

HSP 1 Score: 56.9954 bits (136), Expect = 4.995e-10
Identity = 51/191 (26.70%), Postives = 88/191 (46.07%), Query Frame = 2 
Query:  173 PPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGS--XXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINI 739
            P     F + T P S F   Y +   P  L+H +  +K+ W    E + +   L    +GL ET HPY F +R+G  ++L+  GS  K LP++P+L   +K AL+  + +V    L+ L+ L   + ++G A+  + + +L  L               Y +   + L + +   LQ  E  GG+  ++ I
Sbjct:   27 PKTIDPFSDRTRPISAFATIYAKAGIPCRLVHGSVKHKLHWDTPPEDIPFDPLLITLAEGLRETCHPYTFVSREGFRELLQTQGSNEKALPLLPRLAPILKSALSHSDPEVFLRGLEALEQL---SAVVGPAINDHLKLLLTSL---------------YKRMMDKKLREQVTSVLQRLEENGGKYGFLTI 199
[Close]
BLAST of Parkin coregulated protein vs. Ensembl Nematostella
Match: EDO44660 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RV02])

HSP 1 Score: 309.686 bits (792), Expect = 1.332e-106
Identity = 165/216 (76.39%), Postives = 177/216 (81.94%), Query Frame = 2 
Query:  128 AFTPISLTRQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCML 775
            AFT  S      V +PP AGAF E +  P+ FR FYERGDFPIAL HDTKGNKIAWKVEIEKLDYHHYLPLF DGLSET HPYEFFARQGVHDMLEHGG+KILPVIPQLIIP+K+AL  R  KV CT LKVLQHLV+S DLIGEALVPYYRQILP+LN F N N N GD I YSQ KREN+GDLIHETL+ FE  GG DA+INIKYM+P YESCML
Sbjct:   40 AFTTKSRQPFSKVKSPPAAGAFAERSVAPTAFRKFYERGDFPIALEHDTKGNKIAWKVEIEKLDYHHYLPLFADGLSETTHPYEFFARQGVHDMLEHGGNKILPVIPQLIIPVKQALATRQPKVLCTTLKVLQHLVVSGDLIGEALVPYYRQILPVLNIFKNCNLNSGDKIDYSQHKRENIGDLIHETLEQFERTGGPDAFINIKYMIPTYESCML 255
[Close]
BLAST of Parkin coregulated protein vs. Ensembl Nematostella
Match: EDO44659 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RV01])

HSP 1 Score: 307.76 bits (787), Expect = 8.131e-106
Identity = 164/216 (75.93%), Postives = 176/216 (81.48%), Query Frame = 2 
Query:  128 AFTPISLTRQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCML 775
            AFT  S  +   V   P AGAFKE   P + FR  Y+RGDFPIAL HDTKGNKIAWKVEIEKLDYHHYLPLF +GL ET HPYEFFARQGVHDMLEHGGSK+LPVIPQLIIP K+ALN RN KV CT LK LQHLV+S DL+GEALVPYYRQILPILN F NKN N GDGI YSQQ+REN+GDLI ETL+ FE  GG DA+INIKYMVP YESCML
Sbjct:   45 AFTSKSRLQNSIVKPAPPAGAFKERQAPQTNFRKCYDRGDFPIALEHDTKGNKIAWKVEIEKLDYHHYLPLFVEGLCETSHPYEFFARQGVHDMLEHGGSKVLPVIPQLIIPFKQALNTRNPKVVCTTLKALQHLVVSADLVGEALVPYYRQILPILNIFKNKNLNSGDGIDYSQQRRENIGDLITETLEGFERRGGPDAFINIKYMVPTYESCML 260
[Close]
BLAST of Parkin coregulated protein vs. Ensembl Nematostella
Match: EDO38477 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SCX1])

HSP 1 Score: 62.3882 bits (150), Expect = 7.907e-12
Identity = 56/189 (29.63%), Postives = 90/189 (47.62%), Query Frame = 2 
Query:  215 SQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDML--EHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCML 775
            S F   Y  G  P  L+H +  +K+ W    + L +   L    +GL ET+HPY F AR+G  +ML  E    +  P++P+L+ P++ AL+  + +V    L  L  L     ++ EAL P+ + +LP      + +  L D         ++L + I  +LQ  E   G ++   IK  VP Y+S  L
Sbjct:   21 SSFAAVYASGGVPCRLIHGSVKHKLQWDTPPDNLPFDPILITLAEGLRETKHPYTFVAREGFREMLDVEDSPERTTPILPKLVFPLRAALSAPDLEVFQNSLDALVQLSF---VVREALNPHLKTLLP------HVSRRLMD---------KSLKEKIISSLQHIERNCGRESLPIIKLKVPTYQSVCL 191
[Close]
BLAST of Parkin coregulated protein vs. Ensembl Medaka
Match: pacrg (parkin coregulated [Source:NCBI gene;Acc:101172037])

HSP 1 Score: 210.69 bits (535), Expect = 9.293e-68
Identity = 116/215 (53.95%), Postives = 149/215 (69.30%), Query Frame = 2 
Query:  128 AFTPISLTRQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCM 772
            AFT  +      V  P K   F+E    P+ FR  Y+R D PIAL +  + N I W+V+IE++DYHHYLPLFF+GL ET +PYE  A QG +DML+HGG KILPVIP L+ PI++ALN RNH+V CT+LKVLQ LV+S D  GEALVPYYR ILP+ N        L D  S + +K +N+G L+ ETL+V E  GG+DA+I+IKYM+P Y+SC+
Sbjct:   13 AFTVRASMENAVVEPPAKTDVFQEQAYRPTAFRKHYDRRDLPIALDYGGRPNSIKWQVDIERIDYHHYLPLFFEGLRETAYPYETLACQGAYDMLDHGGQKILPVIPLLVQPIREALNTRNHRVVCTMLKVLQRLVMSADGAGEALVPYYRNILPMFNI-------LKDKKSLNSEKGDNIGHLVGETLKVMEQQGGQDAFIHIKYMIPTYQSCI 220
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BLAST of Parkin coregulated protein vs. Ensembl Medaka
Match: pacrg (parkin coregulated [Source:NCBI gene;Acc:101172037])

HSP 1 Score: 166.777 bits (421), Expect = 1.493e-50
Identity = 95/183 (51.91%), Postives = 120/183 (65.57%), Query Frame = 2 
Query:  128 AFTPISLTRQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGD 676
            AFT  +      V  P K   F+E    P+ FR  Y+R D PIAL +  + N I W+V+IE++DYHHYLPLFF+GL ET +PYE  A QG +DML+HGG KILPVIP L+ PI++ALN RNH+V CT+LKVLQ LV+S D  GEALVPYYR ILP+ N   +K  ++   I     K   + D
Sbjct:   13 AFTVRASMENAVVEPPAKTDVFQEQAYRPTAFRKHYDRRDLPIALDYGGRPNSIKWQVDIERIDYHHYLPLFFEGLRETAYPYETLACQGAYDMLDHGGQKILPVIPLLVQPIREALNTRNHRVVCTMLKVLQRLVMSADGAGEALVPYYRNILPMFNILKDKRRSVVFAIPGRALKPSTVWD 195
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BLAST of Parkin coregulated protein vs. Planmine SMEST
Match: SMESG000000577.1 (SMESG000000577.1)

HSP 1 Score: 466.848 bits (1200), Expect = 1.214e-168
Identity = 241/242 (99.59%), Postives = 241/242 (99.59%), Query Frame = 2 
Query:   53 MALVENNHSRKDFSKIKKQRGKSDFAFTPISLTRQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCMLQ 778
            MALVEN HSRKDFSKIKKQRGKSDFAFTPISLTRQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSKILPVIPQLIIPIKKALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCMLQ
Sbjct:    1 MALVENIHSRKDFSKIKKQRGKSDFAFTPISLTRQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSKILPVIPQLIIPIKKALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQQKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCMLQ 242
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BLAST of Parkin coregulated protein vs. Planmine SMEST
Match: SMESG000073619.1 (SMESG000073619.1)

HSP 1 Score: 71.633 bits (174), Expect = 2.248e-14
Identity = 61/226 (26.99%), Postives = 99/226 (43.81%), Query Frame = 2 
Query:  116 KSDFAFTPISLTRQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCT----VLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINK--NENLGDGISYSQQKRENLGDLIHETLQVFENYGGE---DAYINIKYMVPIYES 766
            K   AF PIS +R+ DVG PP+    +   T  S FR  + +G  PI +      +  +W + ++ L   +  P   +G+S++    EF+ R  +  +     +     + +    I  +L K    + C+     L  L+ +V  +D+     +PY   I   +N F  K  N+NL     YS +  ENL   I E  + FE        +AY  IK ++P YES
Sbjct:   32 KRKLAFKPISFSRKFDVGKPPEIMIGENNIT--SNFRRLFIKGTIPIRMTILPNRDIASWTLPLDTLPLQNLFPYLVEGISDSN---EFYQRLALSALKSIINNSNKNNLLKWTPNIVASLKKCIRTLKCSTISRTLVFLKAIVHMDDIAAVLFLPYIYTIFRPINFFFRKDCNQNLEKS-QYSCESIENLKKNIREFFEDFELQCCPFELEAYFEIKNVLPTYES 251
[Close]
BLAST of Parkin coregulated protein vs. Planmine SMEST
Match: SMESG000039534.1 (SMESG000039534.1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.230e-13
Identity = 65/227 (28.63%), Postives = 101/227 (44.49%), Query Frame = 2 
Query:  116 KSDFAFTPISLTRQIDVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGN--KIAWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXX-XXXXXXXXALNKRNHKVCCTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFI---NKNE-NLGDGISYSQQKRENLGDLIHETLQVFENYGGED---AYINIKYMVPIYES 766
            K + +FT  +     D+G P K    +E     S+FR   E G+FPI+  H    +  ++AW  E+++LD+    P   +G  +    Y   A   + D ++HG    +       I  + K L   N      VL  L+ L+L     G AL PY  +I    N ++   +KN  N+ D I Y Q K   + + I E +Q+ E   G D   A I +K  +P Y+S
Sbjct:   16 KQNRSFTVQAEQTIWDIGNPVKGVEKRELII--SEFRSRLEGGEFPISQDHSGSLSEPRLAWTTEVQELDFKDMFPKLIEGFLDNMSQYRKIALLTLKDSIKHGDPHAIADSIPYFITMLGKVLKYYNETAARLVLVFLKILLLHCVPAGPALAPYLGKIFMFFNVYMIDSSKNLCNMEDYIFYYQYKEPCMTEYIEEVMQLAEMKAGNDGMLAAIKLKEAIPSYQS 240
[Close]
BLAST of Parkin coregulated protein vs. Planmine SMEST
Match: SMESG000068580.1 (SMESG000068580.1)

HSP 1 Score: 63.929 bits (154), Expect = 1.287e-11
Identity = 60/221 (27.15%), Postives = 97/221 (43.89%), Query Frame = 2 
Query:  161 DVGAPPKAGAFKETTTPPSQFRLFYERGDFPIALMHDTKGNKI---AWKVEIEKLDYHHYLPLFFDGLSETEHPYEFFARQGVHDMLEHGGSXXXXXXXXXXXXXXXALNKRNHKVCCTV-LKVLQHLVLSNDLIGEALVPYYRQILPILNTFINK-NENLGDGISYSQQKRENLGDLIHETLQVFENYGGE-----DAYINIKYMVPIYESCMLQ*KFLH 793
            ++G PPK  A K      SQF+  Y  G  P  + +     KI   AWKV I+ LD    LP+   GL+++ H +   A   +  +LEH   + +      I+   K + +  +K   T  LK L+ ++      G  ++  Y +I+  LN ++N   E L D I Y Q     L   I   L+  E          + ++ IK  +P YES +   K+++
Sbjct:   43 EIGKPPKILARKPIQYN-SQFKRDYVNGKLPFEIDYTANSGKIVRLAWKVSIQTLDLSDLLPIVIYGLADSNHRFADLAELVLVYILEHAHRRQIYQCLMDIVKPFKFVFRSYNKYAITTGLKALEKIISGLYYAGHVMMREYERIICPLNLYLNDPEEKLCDDIFYGQWHNNYLTSTIETALRAIERSAKGPLEQYNTFVEIKKAIPRYESEVFPLKYIN 262
The following BLAST results are available for this feature:
BLAST of Parkin coregulated protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
PACRG1.939e-10473.15parkin coregulated [Source:HGNC Symbol;Acc:HGNC:19... [more]
PACRG1.939e-10473.15parkin coregulated [Source:HGNC Symbol;Acc:HGNC:19... [more]
PACRG2.455e-9661.96parkin coregulated [Source:HGNC Symbol;Acc:HGNC:19... [more]
PACRG4.522e-5378.81parkin coregulated [Source:HGNC Symbol;Acc:HGNC:19... [more]
PACRG4.327e-4974.17parkin coregulated [Source:HGNC Symbol;Acc:HGNC:19... [more]
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BLAST of Parkin coregulated protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
pcrg-11.636e-1831.47Parkin Co-Regulated Gene (PACRG) homolog [Source:... [more]
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BLAST of Parkin coregulated protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
CG151208.704e-7263.24gene:FBgn0034454 transcript:FBtr0086463[more]
CG173491.119e-4038.81gene:FBgn0032771 transcript:FBtr0081198[more]
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BLAST of Parkin coregulated protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
pacrg4.586e-11072.29PARK2 co-regulated [Source:ZFIN;Acc:ZDB-GENE-04111... [more]
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BLAST of Parkin coregulated protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3
Match NameE-valueIdentityDescription
ikzf31.154e-10874.12IKAROS family zinc finger 3 [Source:Xenbase;Acc:XB... [more]
pacrgl2.473e-1025.00parkin coregulated like [Source:NCBI gene;Acc:1000... [more]
pacrgl9.486e-923.08parkin coregulated like [Source:NCBI gene;Acc:1000... [more]
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BLAST of Parkin coregulated protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Pacrg8.790e-10570.48PARK2 co-regulated [Source:MGI Symbol;Acc:MGI:1916... [more]
5730480H06Rik4.447e-1023.79RIKEN cDNA 5730480H06 gene [Source:MGI Symbol;Acc:... [more]
5730480H06Rik4.447e-1023.79RIKEN cDNA 5730480H06 gene [Source:MGI Symbol;Acc:... [more]
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BLAST of Parkin coregulated protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 4
Match NameE-valueIdentityDescription
sp|Q9DAK2|PACRG_MOUSE6.149e-10470.48Parkin coregulated gene protein homolog OS=Mus mus... [more]
sp|Q96M98|PACRG_HUMAN1.179e-9561.96Parkin coregulated gene protein OS=Homo sapiens OX... [more]
sp|Q9D3X5|PACRL_MOUSE3.110e-923.79PACRG-like protein OS=Mus musculus OX=10090 GN=Pac... [more]
sp|Q8N7B6|PACRL_HUMAN5.007e-925.71PACRG-like protein OS=Homo sapiens OX=9606 GN=PACR... [more]
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BLAST of Parkin coregulated protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1I8HRC55.215e-11983.49Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A4Z2CWM54.274e-11876.17Parkin coregulated protein OS=Schistosoma japonicu... [more]
A0A5J4N7H86.842e-11774.35Uncharacterized protein OS=Paragonimus westermani ... [more]
A0A183P1D61.990e-11671.72Uncharacterized protein OS=Schistosoma mattheei OX... [more]
A0A094ZVU86.276e-11671.72Parkin coregulated gene protein-like protein OS=Sc... [more]
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BLAST of Parkin coregulated protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
pacrg3.647e-10776.85parkin coregulated [Source:NCBI gene;Acc:103030614... [more]
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BLAST of Parkin coregulated protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
PACRGL4.995e-1026.70parkin coregulated like [Source:HGNC Symbol;Acc:HG... [more]
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BLAST of Parkin coregulated protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Parkin coregulated protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 3
Match NameE-valueIdentityDescription
EDO446601.332e-10676.39Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO446598.131e-10675.93Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO384777.907e-1229.63Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Parkin coregulated protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
pacrg9.293e-6853.95parkin coregulated [Source:NCBI gene;Acc:101172037... [more]
pacrg1.493e-5051.91parkin coregulated [Source:NCBI gene;Acc:101172037... [more]
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BLAST of Parkin coregulated protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000000577.11.214e-16899.59SMESG000000577.1[more]
SMESG000073619.12.248e-1426.99SMESG000073619.1[more]
SMESG000039534.11.230e-1328.63SMESG000039534.1[more]
SMESG000068580.11.287e-1127.15SMESG000068580.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30016922 ID=SMED30016922|Name=Parkin coregulated protein|organism=Schmidtea mediterranea sexual|type=transcript|length=858bp
AAGTTGTCACTTAGTAACTGCAATACAGTTCATTTTGAATAATTAAATTA
ATATGGCTCTGGTTGAAAATAATCACAGTAGAAAAGACTTTTCCAAAATT
AAAAAGCAAAGAGGAAAATCAGATTTTGCCTTTACTCCAATTTCATTAAC
TAGGCAAATTGATGTTGGCGCTCCACCAAAAGCCGGGGCTTTTAAGGAAA
CAACAACTCCACCATCTCAGTTTAGACTGTTTTATGAAAGAGGTGATTTT
CCAATCGCATTAATGCATGATACTAAAGGAAACAAAATTGCTTGGAAAGT
TGAAATTGAAAAATTAGATTACCACCACTATTTACCATTATTTTTCGACG
GATTATCGGAAACAGAACATCCATACGAATTTTTTGCAAGACAAGGAGTT
CATGACATGCTGGAACATGGAGGATCTAAAATATTGCCTGTTATACCACA
ATTAATAATTCCAATAAAAAAGGCATTAAACAAGAGAAATCATAAAGTGT
GTTGCACAGTTCTTAAAGTTCTTCAACATTTAGTACTTTCAAATGATCTA
ATTGGAGAAGCTCTTGTTCCATATTACAGACAAATATTACCAATACTTAA
CACTTTTATTAATAAAAATGAAAATCTTGGTGATGGAATATCATATAGTC
AACAAAAACGAGAAAATCTTGGAGATTTAATTCATGAAACGTTGCAGGTT
TTTGAAAACTATGGTGGGGAAGACGCATATATTAATATAAAATATATGGT
TCCAATTTATGAATCTTGCATGTTACAATAAAAATTTTTACATTTTTTAT
CGGATTTCATAAATGTTTACATTATTAGATTGTTTATGCACATCTGTACT
TTTAATAG
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protein sequence of SMED30016922-orf-1

>SMED30016922-orf-1 ID=SMED30016922-orf-1|Name=SMED30016922-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=243bp
MALVENNHSRKDFSKIKKQRGKSDFAFTPISLTRQIDVGAPPKAGAFKET
TTPPSQFRLFYERGDFPIALMHDTKGNKIAWKVEIEKLDYHHYLPLFFDG
LSETEHPYEFFARQGVHDMLEHGGSKILPVIPQLIIPIKKALNKRNHKVC
CTVLKVLQHLVLSNDLIGEALVPYYRQILPILNTFINKNENLGDGISYSQ
QKRENLGDLIHETLQVFENYGGEDAYINIKYMVPIYESCMLQ*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000020protonephridia
PLANA:0000034epidermis
PLANA:0000099neuron
PLANA:0000106ciliated epithelial cell
PLANA:0000418head
PLANA:0002032epidermal cell
Vocabulary: INTERPRO
TermDefinition
IPR019399Parkin_co-regulated_protein
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: molecular function
TermDefinition
GO:0005488binding
GO:0001664G-protein coupled receptor binding
GO:0003779actin binding
GO:0030544Hsp70 protein binding
GO:0031072heat shock protein binding
GO:0031625ubiquitin protein ligase binding
GO:0043014alpha-tubulin binding
GO:0048487beta-tubulin binding
GO:0051087chaperone binding
GO:0051879Hsp90 protein binding
Vocabulary: cellular component
TermDefinition
GO:0005634nucleus
GO:0005739mitochondrion
GO:0005829cytosol
GO:0005929cilium
GO:0031982vesicle
GO:0043005neuron projection
GO:0044297cell body
GO:0097225sperm midpiece
Vocabulary: biological process
TermDefinition
GO:0007286spermatid development
GO:0034620cellular response to unfolded protein
GO:0060548negative regulation of cell death
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019399Parkin co-regulated proteinPFAMPF10274ParcGcoord: 55..238
e-value: 9.3E-82
score: 273.6
IPR019399Parkin co-regulated proteinPANTHERPTHR21207PARKIN COREGULATED GENE PROTEIN PARK2 COREGULATEDcoord: 37..240
NoneNo IPR availablePANTHERPTHR21207:SF2PARKIN COREGULATED GENE PROTEINcoord: 37..240
IPR016024Armadillo-type foldSUPERFAMILYSSF48371ARM repeatcoord: 92..215