SMED30016911

Overview
NameSMED30016911
Smed IDSMED30016911
Length (bp)2341
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30016911 (SMED30016911) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30016911 (SMED30016911) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30016911 (SMED30016911) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30016911 (SMED30016911) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30016911

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30016911SMESG000025369.1 Contig5036newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30016911SMESG000025369.1 Contig5036uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30016911SMESG000027670.1 Contig5036newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30016911SMESG000027670.1 Contig5036uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
cephalic gangliaSMED30016911SMESG000025369.1 dd_Smed_v4_11368_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30016911SMESG000025369.1 dd_Smed_v4_11368_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30016911 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000291:43956..46299 +11524
Homology
[Close]
BLAST of SMED30016911 vs. Planmine SMEST
Match: SMESG000025369.1 (SMESG000025369.1)

HSP 1 Score: 963.755 bits (2490), Expect = 0.000e+0
Identity = 528/528 (100.00%), Postives = 528/528 (100.00%), Query Frame = 3 
Query:  270 MTNMKSFNFLFSKIKIYQVLLHNSFVICVKRTMPQDSIVTQSNRNAVIKFMISIKLLIFSIVYLTNYSLFIVRFTPLKDRCIGIPKIITCAMVIVKLTNILLIIYNARINYRFRNLRIRNPVERPMILYXXXXXXXXXXXXXXXXXXXNTTLKWLSDSIDMSVDFGCSILNLIAVILFILDISGCRNTGEEWLMSYVNXXXXXXXXXXXXMEAMKTLTFKMSSIYSNLIYKYFNISFYEENKFSKSFLTSSAINQIRVIEEDSIIMLLVVLFPYLIVCLDQHMKNMFKDVSKGNNPQTLSVRNLTFLSLSGCITVVVFSIFELVLIIYTHGKPYTEWGCEEWIYRGFDGLKFIFVVINIVSMIHEIRLWLTVEENRFYDLKKLFIYFGTFGNIIKAVILVFFNIFQIVSQSVFENTTLSVNCSYIIMHVEDIIQTVLMSSLILLILDKEPKPFLKISWSYEFCSPILLLMNRVNEIIRCSLYMLIPNGKYFEINLILIGSYSFAQPIVIFYNVTCVIILASTVYSMRH 1853
            MTNMKSFNFLFSKIKIYQVLLHNSFVICVKRTMPQDSIVTQSNRNAVIKFMISIKLLIFSIVYLTNYSLFIVRFTPLKDRCIGIPKIITCAMVIVKLTNILLIIYNARINYRFRNLRIRNPVERPMILYLICLPLLVISIISISLSALNTTLKWLSDSIDMSVDFGCSILNLIAVILFILDISGCRNTGEEWLMSYVNFCIIIITICTIFMEAMKTLTFKMSSIYSNLIYKYFNISFYEENKFSKSFLTSSAINQIRVIEEDSIIMLLVVLFPYLIVCLDQHMKNMFKDVSKGNNPQTLSVRNLTFLSLSGCITVVVFSIFELVLIIYTHGKPYTEWGCEEWIYRGFDGLKFIFVVINIVSMIHEIRLWLTVEENRFYDLKKLFIYFGTFGNIIKAVILVFFNIFQIVSQSVFENTTLSVNCSYIIMHVEDIIQTVLMSSLILLILDKEPKPFLKISWSYEFCSPILLLMNRVNEIIRCSLYMLIPNGKYFEINLILIGSYSFAQPIVIFYNVTCVIILASTVYSMRH
Sbjct:    1 MTNMKSFNFLFSKIKIYQVLLHNSFVICVKRTMPQDSIVTQSNRNAVIKFMISIKLLIFSIVYLTNYSLFIVRFTPLKDRCIGIPKIITCAMVIVKLTNILLIIYNARINYRFRNLRIRNPVERPMILYLICLPLLVISIISISLSALNTTLKWLSDSIDMSVDFGCSILNLIAVILFILDISGCRNTGEEWLMSYVNFCIIIITICTIFMEAMKTLTFKMSSIYSNLIYKYFNISFYEENKFSKSFLTSSAINQIRVIEEDSIIMLLVVLFPYLIVCLDQHMKNMFKDVSKGNNPQTLSVRNLTFLSLSGCITVVVFSIFELVLIIYTHGKPYTEWGCEEWIYRGFDGLKFIFVVINIVSMIHEIRLWLTVEENRFYDLKKLFIYFGTFGNIIKAVILVFFNIFQIVSQSVFENTTLSVNCSYIIMHVEDIIQTVLMSSLILLILDKEPKPFLKISWSYEFCSPILLLMNRVNEIIRCSLYMLIPNGKYFEINLILIGSYSFAQPIVIFYNVTCVIILASTVYSMRH 528
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BLAST of SMED30016911 vs. Planmine SMEST
Match: SMESG000027122.1 (SMESG000027122.1)

HSP 1 Score: 160.229 bits (404), Expect = 4.972e-42
Identity = 136/485 (28.04%), Postives = 265/485 (54.64%), Query Frame = 3 
Query:  399 RNAVIKFMISIKLLIFSIVYLTNYSLFIVRFTPLKDRCIGIPKIITCAMVIVKLTNILLIIYNARINYRFRNLRIRNPVERPMILYXXXXXXXXXXXXXXXXXXXNTTLKWLSDSIDMSVDFGCSILNLIAVILFILDISGCRNTGEEWLMSYVNXXXXXXXXXXXXMEAMKTLTFKMSSIYSNLIYKYFNISFYEENKFSKSFLTSSAINQIRVIEEDSIIMLLVVLFPYLIVCLDQHMKNMFKDVSKGNNPQTLSVRNLTFLSLSGCITVVVFSIFELVLIIYTHGKPYTEWGCEEWIYRGFDGLKFIFVVINIVS-------MIHEIRLWLTVEENRFYDLKKLFIYFGTFGNIIKAVILVFFNIFQIVSQSVFENTTLSVNCSYIIMHVEDIIQTVLMSSLILLILDKEPKPFLKISWSYEFCSPILLLMNRVNEIIRCSLYMLIPNGKYFEINLILIGSYSFAQPIVIFYNVTCVIILAS 1832
            +  V K +    L   S+  L  YS FI+  T +++RC    + I   + I+ + N+LLI+YN ++NY++RNLR    +E+P++ YLICLPLL++ +++++L  +N+  +W +  I   ++ G +     AVI+ ILDISG  +TGEE  ++ VN   II+T+ ++     K    K  +I+ N     +N S Y++++  +S L+  +   +  ++E SI++LL+VL PY+++ L ++++ ++K +S   + + +  +  ++L++SG I V V+SI  +V  I  +   + +           + + F  +V+  VS       M+ E  LW  +    FY++  +F++FGT G  ++ +  + F++     +S  + +T +++      H+  +++T + S L+L ++++  K  L+  W+  F SP+L+ +N+   +I+  L   +     F+ N IL G  S A P  I Y++ C ++ AS
Sbjct:    2 KEIVEKLIACAYLFTVSLSILLTYSTFIILNTQVQERCSYCFEFIQWPVNILMMVNVLLIVYNTKMNYKYRNLRFSLQIEQPLVFYLICLPLLLVILVALTLLTINSISRWFATRIGFVIEIGLAATEFFAVIILILDISGFSDTGEEPFINSVNSVTIIVTLISMGFLFSKNFILKSRNIFKN----SYNNSIYDKSRDDRSILSYKSNLFLNRLKETSILLLLIVLIPYMMIPLRENLRKLWKSLSISKHKEHIGKKYTSYLTVSGIIIVTVYSIVSIV--IGVNRNNFIK-----------NPIYFFLMVVQEVSVFPIFYLMLQETNLWTRLMNVNFYNITNIFLHFGTIGQYLQTLNGILFHVI----ESQMKASTNNIDYFMFGFHLIKLLKTTITSLLVLAMVERNFKKPLRTFWNCFFSSPVLIFINQWANLIQ-ELMQQVDYKNGFQANAILQGVTSLASPFCILYHLYCSMMFAS 464
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BLAST of SMED30016911 vs. Planmine SMEST
Match: SMESG000025336.1 (SMESG000025336.1)

HSP 1 Score: 157.532 bits (397), Expect = 6.625e-41
Identity = 142/496 (28.63%), Postives = 271/496 (54.64%), Query Frame = 3 
Query:  366 MPQDSIVTQSNRNAVIKFMISIKLLIFSIVYLTNYSLFIVRFTPLKDRCIGIPKIITCAMVIVKLTNILLIIYNARINYRFRNLRIRNPVERPMILYXXXXXXXXXXXXXXXXXXXNTTLKWLSDSIDMSVDFGCSILNLIAVILFILDISGCRNTGEEWLMSYVNXXXXXXXXXXXXMEAMKTLTFKMSSIYSNLIYKYFNISFYEENKFSKSFLTSSAINQIRVIEEDSIIMLLVVLFPYLIVCLDQHMKNMFKDVSKGNNPQTLSVRNLTFL-SLSGCITVVVFSIFELVLIIYTHGKPYTEWGCEEWIY---RGFDGLKFIFVVINIVSMIHEIRLWLTVEENRFYDLKKLFIYFGTFGNIIKAVILVFFNIF--QIVSQSVFENTTLSVNCSYIIMHVEDIIQTVLMSSLILLILDKEPKPFLKISWSYEFCSPILLLMNRVNEIIRCSLYMLIP-NGK--YFEINLILIGSYSFAQPIVIFYNVTCVIIL 1826
            M          +   +KF+IS+ L +F +VY+TNY  ++ R TP ++R  G  + I  ++  VK+ +I+LI YN +IN+RFRNLRI++ +E+P+I YLICLP+L++S+I + +  L  T +    +          I      I+ ++DI+G  +TGEEW M+Y N   IIIT+ ++ M+    +   ++  +SN + +  + + Y  + F  +F   ++ N+I  +++ ++I L +   P+L++ L +++ ++F+  +K + P+   + ++  + S++G +TV V+    L+ I+        E G   +IY   R       +F +  +  MI EI++   +  +++ ++K + IY G FG    ++  +  +I+  +I    +FE   L  N   ++   E +I+T+L+++L+L +LD E   FL+ SW++ F +PI +L+ +++     S Y+  P  GK   F+I +I  G+  FA  +V  Y   C +I+
Sbjct:    1 MESGGYFLNQRKEICLKFLISVPLFLFGMVYVTNYGFYVYRITPNENRNDGYIEKINYSISFVKVVSIILICYNTKINHRFRNLRIKHKLEQPLIFYLICLPILLMSLIGVFVVILYYTFERSVKNPSHITYCSLVIFEYFLFIVLVIDINGFSDTGEEWFMNYFNSMTIIITMTSVIMQICLNIIMILTEEFSNSLNQVLHFNLYSNHSF--TFFDKTSYNKIIFLKKRTVITLSLAFIPFLVIPLKRNLNHLFQFKTKDDLPEDQPILSMNKVSSITGSLTVGVY--ITLIFIVDLCNFVIHERG--NYIYLTSRIIKAFLILFSIGLLAIMITEIKVSARLNSSQYLNVKNILIYLGAFGQFSISIAYIVVDIYNLEINGIGLFE---LIQNILLLVSSFEYLIETMLLTTLMLFVLDGETIFFLENSWTFFFHTPINILILQLSIF---SEYLTKPVYGKENSFQIRIIEQGTLDFAIYLVYLYRSICFMII 484
[Close]
BLAST of SMED30016911 vs. Planmine SMEST
Match: SMESG000025344.1 (SMESG000025344.1)

HSP 1 Score: 155.992 bits (393), Expect = 2.363e-40
Identity = 142/495 (28.69%), Postives = 259/495 (52.32%), Query Frame = 3 
Query:  366 MPQDSIVTQSNRNAVIKFMISIKLLIFSIVYLTNYSLFIVRFTPLKDRCIGIPKIITCAMVIVKLTNILLIIYNARINYRFRNLRIRNPVERPMILYXXXXXXXXXXXXXXXXXXXNTTLKWLSDSIDMSVDFGCSILNLIAVILFILDISGCRNTGEEWLMSYVNXXXXXXXXXXXXMEAMKTLTFKMSSIYSNLIYKYFNISFYEENKFSKSFLTSSAINQIRVIEEDSIIMLLVVLFPYLIVCLDQHMKNMFKDVSKGNNPQTLSVRNLTFL-SLSGCITVVVFSIFELVLIIYTHGKPYTEWGCEEWI--YRGFDGLKFIFVVINIVSMIHEIRLWLTVEENRFYDLKKLFIYFGTFGNIIKAVILVFFNIF--QIVSQSVFENTT----LSVNCSYIIMHVEDIIQTVLMSSLILLILDKEPKPFLKISWSYEFCSPILLLMNRVN---EIIRCSLYMLIPNGKYFEINLILIGSYSFAQPIVIFYNVTC 1814
            M          +   +KF+IS+ L +F +VY+TNY  ++ + +P  DR       I  ++  VK+ +I+LI YN +IN+RFRNLRI++ +E+P+I YLICLP+L IS++ + +   + T +    S ++ + F   I      I+ ++DI+G  +TGEEW M+Y N   IIIT+ ++ ++    +   ++  ++N + +   +S +  + F  +    +    +  +++ ++I L +V  P+L++ L +++ ++F+   K + P+  +V ++  + S++G  TV VF    L  I+  H   Y      + I   R    L   F+   +  MI EI++   +  +++ ++K + IY G FG     +  +  NI+  Q     +FE+T     L+ N  Y       +I+T+LM++L+L +LD +   F K SWS  F SPI +L+ ++    E +  S Y        F+I ++ IG+  FA P+VI Y   C
Sbjct:    1 MESGGYFLNQRKEICLKFLISVPLFLFGMVYVTNYGFYVYQISPRGDRKDEYLDKINYSISFVKIVSIILICYNTQINHRFRNLRIKHKLEQPLIFYLICLPMLFISLMGLFVIIFHYTFEKSGTSTNI-LYFALVIFEYFLFIILVIDINGFSDTGEEWFMNYFNSMTIIITMTSVMIQICLNIIMILTDDFTNTMNRTTFVSLFSNHNF--TIFDKTCYRTLVFLKKRAVITLSLVFIPFLVIPLKRNLTHLFRFKPKEDLPEDKTVLSMNKVSSITGGFTVGVF----LTFIVIVH-LLYVMQNVPQVIIASRIIKLLVSFFISCLLGIMITEIKISARLNSSQYLNVKNILIYLGAFGQFSVQITNIVVNIYNLQTNGNGLFESTKDILILTSNFVY-------LIETILMTTLMLFVLDGKAVSFPKNSWSIFFYSPINILILQIGVFTEYLTKSFY---DEQNSFQIRMMEIGTMYFAIPLVILYRAIC 477
[Close]
BLAST of SMED30016911 vs. Planmine SMEST
Match: SMESG000025342.1 (SMESG000025342.1)

HSP 1 Score: 114.775 bits (286), Expect = 1.587e-27
Identity = 83/287 (28.92%), Postives = 167/287 (58.19%), Query Frame = 3 
Query:  366 MPQDSIVTQSNRNAVIKFMISIKLLIFSIVYLTNYSLFIVRFTPLKDRCIGIPKIITCAMVIVKLTNILLIIYNARINYRFRNLRIRNPVERPMILYXXXXXXXXXXXXXXXXXXXNTTLKWLSDSIDMSVDFGCSILNLIAVILFILDISGCRNTGEEWLMSYVNXXXXXXXXXXXXMEAMKTLTFKMSSIYSNLIYKYFNISFYEENKFSKSFLTSSAINQIRVIEEDSIIMLLVVLFPYLIVCLDQHMKNMFKDVSKGNNPQTLSVRNLTFL-SLSGCITVVVF 1223
            M          +   +KF+IS+ L +F +VY+TNY  ++ R +P+++R  G  + I  ++  VK+ +I+LI YN +IN+RFRNLRI++ +++P+I YLICLP+L++S+I + +  L  T +    +          I      I+ ++DI+G  +TGEEW M+Y N   IIIT+ ++ M+    +   ++  + N + +  + + Y  + F  +F   ++ N+I  +++ ++I L +   P+L++ L +++ ++F+  +K + P+   + ++  + S++G +TV V+
Sbjct:    1 MESGGYFLNQRKEICLKFLISVPLFLFGMVYVTNYGFYVYRISPMENRNDGYIEKINYSISFVKVVSIILICYNTKINHRFRNLRIKHKLKQPLIFYLICLPILLMSLIGVFVVILYYTFERSVKNPSHITYCSLVIFEYFLFIVLVIDINGFSDTGEEWFMNYFNSMTIIITMTSVIMQICLNIIMILTDEFFNSLNQVLHFNLYSNHSF--TFFDKTSYNKIIFLKKRTVITLSLAFIPFLVIPLKRNLNHLFQFKTKDDLPEDQPILSMNKVSSITGSLTVGVY 285
The following BLAST results are available for this feature:
BLAST of SMED30016911 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016911 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016911 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016911 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016911 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016911 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016911 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016911 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016911 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016911 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016911 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016911 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016911 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016911 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000025369.10.000e+0100.00SMESG000025369.1[more]
SMESG000027122.14.972e-4228.04SMESG000027122.1[more]
SMESG000025336.16.625e-4128.63SMESG000025336.1[more]
SMESG000025344.12.363e-4028.69SMESG000025344.1[more]
SMESG000025342.11.587e-2728.92SMESG000025342.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30016911 ID=SMED30016911|Name=SMED30016911|organism=Schmidtea mediterranea sexual|type=transcript|length=2341bp
GAGAAGTATAAAGACCAGTATCAGCTGGTTTTCTATAAATCAGTCTGTTC
GAATAGTGCTTTCTTGTAATAAAATTACTGCCATGTTATTAACGAAATAT
AAAGTCTGTATTGCAAGATAATCAAAGTTATAAATTATGATCTTAATGAT
TGCAATAACTTTCCAGGGTTTCCGTTTTCAAGACAGCAAATAGATGTAGA
ATTCACCGATGCATTTTATCCATGATAAATAAATTTCATCGACAAAATAA
GCGAAATTATTTAATAACAATGACAAACATGAAATCATTCAATTTCCTGT
TTTCCAAAATTAAAATCTATCAAGTATTACTTCATAATTCATTCGTAATT
TGTGTGAAACGGACAATGCCGCAGGATTCAATTGTCACTCAGTCAAATAG
AAATGCCGTTATCAAATTTATGATTTCGATAAAACTCCTAATATTTAGCA
TAGTATATTTGACGAATTACAGTTTATTTATCGTGAGGTTCACCCCTCTC
AAAGATCGATGTATAGGAATTCCTAAAATAATTACATGTGCAATGGTGAT
TGTGAAATTGACGAATATTTTATTAATCATTTACAATGCAAGGATCAATT
ACAGATTCAGAAATTTGAGGATCAGAAATCCAGTTGAGCGGCCAATGATC
TTGTATTTGATTTGCTTGCCATTATTGGTGATTTCTATCATTTCTATATC
TTTAAGTGCACTCAATACGACTTTAAAGTGGCTGTCAGACAGTATAGATA
TGTCGGTTGATTTTGGGTGTTCAATCCTAAATCTGATAGCAGTAATTCTG
TTCATTCTCGATATTAGTGGATGTAGAAATACCGGAGAAGAATGGTTAAT
GAGTTATGTCAATTTTTGTATTATAATAATTACGATTTGTACGATTTTCA
TGGAAGCCATGAAAACTCTTACTTTTAAAATGTCAAGTATTTATTCAAAT
TTAATTTACAAATATTTTAATATTTCTTTCTATGAAGAAAACAAATTCAG
TAAATCATTTTTGACATCTTCCGCTATCAATCAAATACGCGTTATTGAAG
AAGATTCAATAATTATGCTTCTTGTGGTTCTCTTTCCTTATTTAATCGTT
TGTTTAGATCAACATATGAAAAATATGTTTAAAGATGTATCCAAAGGAAA
CAATCCGCAGACACTTAGTGTGAGAAATCTAACATTTCTTTCTTTATCTG
GGTGCATTACTGTCGTAGTGTTTTCTATATTTGAGCTAGTCCTAATAATA
TATACTCACGGTAAACCATATACTGAATGGGGTTGTGAGGAATGGATTTA
TAGAGGATTCGATGGGCTGAAATTTATATTTGTGGTGATAAATATTGTAT
CAATGATTCATGAAATTCGTCTTTGGTTAACTGTTGAAGAAAATAGATTT
TATGATTTGAAAAAACTTTTTATCTATTTCGGAACATTTGGAAATATAAT
AAAAGCGGTCATTCTTGTATTTTTTAATATTTTTCAGATTGTTAGTCAAA
GCGTTTTCGAAAACACGACATTGTCAGTAAATTGTTCCTACATTATAATG
CATGTCGAAGATATCATACAGACTGTTTTAATGAGCTCACTAATTCTGTT
GATTCTAGATAAGGAACCTAAACCATTTCTGAAAATTTCGTGGAGTTATG
AATTTTGTTCACCAATTTTGTTACTAATGAATCGAGTTAATGAAATAATT
CGATGCAGCTTATATATGCTTATACCGAATGGGAAATATTTTGAGATCAA
CCTTATTTTGATTGGTAGTTATTCTTTTGCCCAGCCAATCGTAATATTTT
ATAACGTAACTTGCGTCATTATTCTAGCTTCAACAGTATACTCTATGAGA
CATTGAATAATTAATATTTATTTCAAACGGATTTTAAAGTACGTTTCTCC
ATTTCCTTGGCTGAATAAACTCTATAATGGTACTGAATGATTTGAATATT
AAAGTTTATTAGATGTATCAAAATTTTGATTGTTGTATTAAAGTTTTATT
TGATTTCGAAATTTATTGAAGATTCAGAAACATGTTTTAAAATGATTATT
TAAAAATTATTTATCAAAAAAGAAGGATAATGAATGACTTTGAACGTAGC
AATTATTTTTCTCACTAATTTGGAAGCGTTCTTTATTATAGTAATTTGGT
GATGAAAGGAAATTTAATTCTCTGGCCATCTGTGGACATTTTGGTTGCAT
TGGTACTTAAAAATGGATATTTTAAATCTTTTCTTGAGAGTATGACAAAA
AAGACTGTAGATAAGTGTGTGTTGAATTTTCATGATTGTGGTACTGATTT
GCCTAAAGGTAATATTTTTATTGACTCTGAAATTGGTAAGT
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protein sequence of SMED30016911-orf-1

>SMED30016911-orf-1 ID=SMED30016911-orf-1|Name=SMED30016911-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=545bp
MINKFHRQNKRNYLITMTNMKSFNFLFSKIKIYQVLLHNSFVICVKRTMP
QDSIVTQSNRNAVIKFMISIKLLIFSIVYLTNYSLFIVRFTPLKDRCIGI
PKIITCAMVIVKLTNILLIIYNARINYRFRNLRIRNPVERPMILYLICLP
LLVISIISISLSALNTTLKWLSDSIDMSVDFGCSILNLIAVILFILDISG
CRNTGEEWLMSYVNFCIIIITICTIFMEAMKTLTFKMSSIYSNLIYKYFN
ISFYEENKFSKSFLTSSAINQIRVIEEDSIIMLLVVLFPYLIVCLDQHMK
NMFKDVSKGNNPQTLSVRNLTFLSLSGCITVVVFSIFELVLIIYTHGKPY
TEWGCEEWIYRGFDGLKFIFVVINIVSMIHEIRLWLTVEENRFYDLKKLF
IYFGTFGNIIKAVILVFFNIFQIVSQSVFENTTLSVNCSYIIMHVEDIIQ
TVLMSSLILLILDKEPKPFLKISWSYEFCSPILLLMNRVNEIIRCSLYML
IPNGKYFEINLILIGSYSFAQPIVIFYNVTCVIILASTVYSMRH*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000070intestinal phagocyte
PLANA:0003116parenchymal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 272..294
NoneNo IPR availableTMHMMTMhelixcoord: 399..421
NoneNo IPR availableTMHMMTMhelixcoord: 368..387
NoneNo IPR availableTMHMMTMhelixcoord: 208..230
NoneNo IPR availableTMHMMTMhelixcoord: 103..121
NoneNo IPR availableTMHMMTMhelixcoord: 174..196
NoneNo IPR availableTMHMMTMhelixcoord: 142..164
NoneNo IPR availableTMHMMTMhelixcoord: 66..88
NoneNo IPR availableTMHMMTMhelixcoord: 322..344
NoneNo IPR availableTMHMMTMhelixcoord: 519..541