Transcription factor ETV6
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30016899 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 9
Homology
BLAST of Transcription factor ETV6 vs. Ensembl Celegans
Match: ets-7 (ETS class transcription factor [Source:UniProtKB/TrEMBL;Acc:O01519]) HSP 1 Score: 50.447 bits (119), Expect = 4.120e-7 Identity = 25/70 (35.71%), Postives = 36/70 (51.43%), Query Frame = 2 Query: 632 KRKSPRDQVLLHIFILDLLMHPYYGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRF 841 KR SP + L F+ LL + ITWSNK+ F++ VA +W GN NY+ +RG+R+ Sbjct: 4 KRTSPNGKQRLLNFLRGLLEDDSHSDLITWSNKDTLEFQMLKPHKVAELWGAATGNPGMNYDKMSRGLRY 73
BLAST of Transcription factor ETV6 vs. Ensembl Celegans
Match: ets-4 (Transcription factor ets-4 [Source:UniProtKB/Swiss-Prot;Acc:A8WFJ9]) HSP 1 Score: 49.6766 bits (117), Expect = 1.928e-6 Identity = 30/103 (29.13%), Postives = 52/103 (50.49%), Query Frame = 2 Query: 605 CKLTEKEDYKRKSPRDQVLLHI--FILDLLMHP-YYGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQL 904 C +E +D +R R Q +H+ FI +LL P Y C+ W ++++ TF+I++S +A W K NY+ +R +R + + + K R VY+ Sbjct: 269 CNGSEGDDDERAYTRHQGTVHLWQFIRELLDQPKQYSACVRWVDRDEGTFKIESSLLLARYWGQRKNRSQMNYDKLSRSLR-QYYKKGIIQKPEKKQRLVYKF 370
BLAST of Transcription factor ETV6 vs. Ensembl Celegans
Match: ets-4 (Transcription factor ets-4 [Source:UniProtKB/Swiss-Prot;Acc:A8WFJ9]) HSP 1 Score: 49.6766 bits (117), Expect = 1.928e-6 Identity = 30/103 (29.13%), Postives = 52/103 (50.49%), Query Frame = 2 Query: 605 CKLTEKEDYKRKSPRDQVLLHI--FILDLLMHP-YYGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQL 904 C +E +D +R R Q +H+ FI +LL P Y C+ W ++++ TF+I++S +A W K NY+ +R +R + + + K R VY+ Sbjct: 269 CNGSEGDDDERAYTRHQGTVHLWQFIRELLDQPKQYSACVRWVDRDEGTFKIESSLLLARYWGQRKNRSQMNYDKLSRSLR-QYYKKGIIQKPEKKQRLVYKF 370
BLAST of Transcription factor ETV6 vs. Ensembl Celegans
Match: ets-4 (Transcription factor ets-4 [Source:UniProtKB/Swiss-Prot;Acc:A8WFJ9]) HSP 1 Score: 49.6766 bits (117), Expect = 1.928e-6 Identity = 30/103 (29.13%), Postives = 52/103 (50.49%), Query Frame = 2 Query: 605 CKLTEKEDYKRKSPRDQVLLHI--FILDLLMHP-YYGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQL 904 C +E +D +R R Q +H+ FI +LL P Y C+ W ++++ TF+I++S +A W K NY+ +R +R + + + K R VY+ Sbjct: 269 CNGSEGDDDERAYTRHQGTVHLWQFIRELLDQPKQYSACVRWVDRDEGTFKIESSLLLARYWGQRKNRSQMNYDKLSRSLR-QYYKKGIIQKPEKKQRLVYKF 370
BLAST of Transcription factor ETV6 vs. Ensembl Celegans
Match: ets-4 (Transcription factor ets-4 [Source:UniProtKB/Swiss-Prot;Acc:A8WFJ9]) HSP 1 Score: 49.2914 bits (116), Expect = 2.223e-6 Identity = 30/103 (29.13%), Postives = 52/103 (50.49%), Query Frame = 2 Query: 605 CKLTEKEDYKRKSPRDQVLLHI--FILDLLMHP-YYGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQL 904 C +E +D +R R Q +H+ FI +LL P Y C+ W ++++ TF+I++S +A W K NY+ +R +R + + + K R VY+ Sbjct: 330 CNGSEGDDDERAYTRHQGTVHLWQFIRELLDQPKQYSACVRWVDRDEGTFKIESSLLLARYWGQRKNRSQMNYDKLSRSLR-QYYKKGIIQKPEKKQRLVYKF 431
BLAST of Transcription factor ETV6 vs. Ensembl Zebrafish
Match: SPDEF (SAM pointed domain containing ETS transcription factor [Source:NCBI gene;Acc:100003543]) HSP 1 Score: 50.447 bits (119), Expect = 1.239e-6 Identity = 27/78 (34.62%), Postives = 41/78 (52.56%), Query Frame = 2 Query: 671 FILDLLMHPY-YGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQ 901 F+ +LL+ P+ YG CI W NK F+I++S VA +W K NY+ +R IR + + + + R VYQ Sbjct: 244 FLRELLLKPHSYGRCIRWLNKEKGIFKIEDSAHVARLWGLRKNRPAMNYDKLSRSIR-QYYKKGIIRKPDVSQRLVYQ 320
BLAST of Transcription factor ETV6 vs. TrEMBL
Match: A0A267FM46 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig022108g1 PE=3 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 1.201e-7 Identity = 36/110 (32.73%), Postives = 55/110 (50.00%), Query Frame = 2 Query: 617 EKEDYKRKSPR------DQVLLHIFILDLLMHPYYGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQLTKTAIHDY 928 E ++R +P + ++H+F+L LL + I W +K + F++ A+A +W IKGN T NYE FARGIR R F + +Y+ + AI DY Sbjct: 574 EIRQFQRLAPELFCWHGQKPMIHLFLLKLLDNSRCRANIEWVDKYNRLFKVVTPSAIAKLWKHIKGNKTDNYECFARGIRHSRDIGRYFEPHGFRQKKIYKFSPKAIEDY 683
BLAST of Transcription factor ETV6 vs. TrEMBL
Match: A0A267FLW3 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig005521g2 PE=3 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 1.203e-7 Identity = 36/110 (32.73%), Postives = 55/110 (50.00%), Query Frame = 2 Query: 617 EKEDYKRKSPR------DQVLLHIFILDLLMHPYYGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQLTKTAIHDY 928 E ++R +P + ++H+F+L LL + I W +K + F++ A+A +W IKGN T NYE FARGIR R F + +Y+ + AI DY Sbjct: 582 EIRQFQRLAPELFCWHGQKPMIHLFLLKLLDNSRCRANIEWVDKYNRLFKVVTPSAIAKLWKHIKGNKTDNYECFARGIRHSRDIGRYFEPHGFRQKKIYKFSPKAIEDY 691
BLAST of Transcription factor ETV6 vs. TrEMBL
Match: A0A267GSY8 (ETS domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig005521g1 PE=3 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 1.204e-7 Identity = 36/110 (32.73%), Postives = 55/110 (50.00%), Query Frame = 2 Query: 617 EKEDYKRKSPR------DQVLLHIFILDLLMHPYYGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQLTKTAIHDY 928 E ++R +P + ++H+F+L LL + I W +K + F++ A+A +W IKGN T NYE FARGIR R F + +Y+ + AI DY Sbjct: 582 EIRQFQRLAPELFCWHGQKPMIHLFLLKLLDNSRCRANIEWVDKYNRLFKVVTPSAIAKLWKHIKGNKTDNYECFARGIRHSRDIGRYFEPHGFRQKKIYKFSPKAIEDY 691
BLAST of Transcription factor ETV6 vs. TrEMBL
Match: A0A1I8HT79 (ETS domain-containing protein OS=Macrostomum lignano OX=282301 PE=3 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 5.338e-7 Identity = 33/90 (36.67%), Postives = 48/90 (53.33%), Query Frame = 2 Query: 659 LLHIFILDLLMHPYYGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQLTKTAIHDY 928 ++H+F+L LL + I W +K + F++ A+A +W IKGN T NYE FARGIR R F + +Y+ + AI DY Sbjct: 1 MIHLFLLKLLDNSRCRANIEWVDKYNRLFKVVTPSAIAKLWKHIKGNKTDNYECFARGIRHSRDIGRYFEPHGFRQKKIYKFSPKAIEDY 90
BLAST of Transcription factor ETV6 vs. TrEMBL
Match: A0A1I8ITS7 (ETS domain-containing protein OS=Macrostomum lignano OX=282301 PE=3 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 1.086e-6 Identity = 33/90 (36.67%), Postives = 48/90 (53.33%), Query Frame = 2 Query: 659 LLHIFILDLLMHPYYGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQLTKTAIHDY 928 ++H+F+L LL + I W +K + F++ A+A +W IKGN T NYE FARGIR R F + +Y+ + AI DY Sbjct: 244 MIHLFLLKLLDNSRCRANIEWVDKYNRLFKVVTPSAIAKLWKHIKGNKTDNYECFARGIRHSRDIGRYFEPHGFRQKKIYKFSPKAIEDY 333
BLAST of Transcription factor ETV6 vs. Ensembl Cavefish
Match: SPDEF (SAM pointed domain containing ETS transcription factor [Source:NCBI gene;Acc:103037006]) HSP 1 Score: 50.8322 bits (120), Expect = 1.005e-6 Identity = 27/78 (34.62%), Postives = 41/78 (52.56%), Query Frame = 2 Query: 671 FILDLLMHPY-YGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQ 901 F+ +LL+ P+ YG CI W NK F+I++S VA +W K NY+ +R IR + + + + R VYQ Sbjct: 258 FLRELLLKPHSYGRCIRWLNKEKGIFKIEDSAHVARLWGLRKNRPAMNYDKLSRSIR-QYYKKGIIRKPDVSQRLVYQ 334
BLAST of Transcription factor ETV6 vs. Ensembl Cavefish
Match: SPDEF (SAM pointed domain containing ETS transcription factor [Source:NCBI gene;Acc:103037006]) HSP 1 Score: 50.8322 bits (120), Expect = 1.005e-6 Identity = 27/78 (34.62%), Postives = 41/78 (52.56%), Query Frame = 2 Query: 671 FILDLLMHPY-YGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQ 901 F+ +LL+ P+ YG CI W NK F+I++S VA +W K NY+ +R IR + + + + R VYQ Sbjct: 258 FLRELLLKPHSYGRCIRWLNKEKGIFKIEDSAHVARLWGLRKNRPAMNYDKLSRSIR-QYYKKGIIRKPDVSQRLVYQ 334
BLAST of Transcription factor ETV6 vs. Ensembl Cavefish
Match: SPDEF (SAM pointed domain containing ETS transcription factor [Source:NCBI gene;Acc:103037006]) HSP 1 Score: 50.8322 bits (120), Expect = 1.005e-6 Identity = 27/78 (34.62%), Postives = 41/78 (52.56%), Query Frame = 2 Query: 671 FILDLLMHPY-YGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQ 901 F+ +LL+ P+ YG CI W NK F+I++S VA +W K NY+ +R IR + + + + R VYQ Sbjct: 258 FLRELLLKPHSYGRCIRWLNKEKGIFKIEDSAHVARLWGLRKNRPAMNYDKLSRSIR-QYYKKGIIRKPDVSQRLVYQ 334
BLAST of Transcription factor ETV6 vs. Ensembl Nematostella
Match: EDO45361 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RSZ8]) HSP 1 Score: 47.3654 bits (111), Expect = 3.056e-7 Identity = 26/70 (37.14%), Postives = 36/70 (51.43%), Query Frame = 2 Query: 638 KSPRDQVLLHI--FILDLLMHPYYGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRF 841 K PR + +H+ F+L+LL Y I WS K F++KN VA W +K NYE +R IR+ Sbjct: 5 KRPRYKNTIHLWEFLLELLADERYSSLIAWSRKEYGEFKLKNQEEVAKRWGILKHRAGMNYEKLSRAIRY 74
BLAST of Transcription factor ETV6 vs. Ensembl Medaka
Match: SPDEF (SAM pointed domain containing ETS transcription factor [Source:NCBI gene;Acc:101167865]) HSP 1 Score: 50.0618 bits (118), Expect = 1.531e-6 Identity = 27/78 (34.62%), Postives = 41/78 (52.56%), Query Frame = 2 Query: 671 FILDLLMHPY-YGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQ 901 F+ +LL+ P+ YG CI W NK F+I++S VA +W K NY+ +R IR + + + + R VYQ Sbjct: 251 FLRELLLKPHNYGRCIRWLNKEKGIFKIEDSAHVARLWGLRKNRPAMNYDKLSRSIR-QYYKKGIIRKPDVSQRLVYQ 327
BLAST of Transcription factor ETV6 vs. Planmine SMEST
Match: SMESG000035130.1 (SMESG000035130.1) HSP 1 Score: 274.633 bits (701), Expect = 2.876e-158 Identity = 132/138 (95.65%), Postives = 133/138 (96.38%), Query Frame = 2 Query: 581 KDPTN---LKNCKLTEKEDYKRKSPRDQVLLHIFILDLLMHPYYGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQLTKTAIHDYKVKRSKNELAKQLMEEALL 985 KDP +KNCKLTEKEDYKRKSPRDQVLLHIFILDLLMHPYYGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQLTKTAIHDYKVKRSKNELAKQLMEEALL Sbjct: 168 KDPIYDELIKNCKLTEKEDYKRKSPRDQVLLHIFILDLLMHPYYGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQLTKTAIHDYKVKRSKNELAKQLMEEALL 305 HSP 2 Score: 265.003 bits (676), Expect = 2.876e-158 Identity = 131/137 (95.62%), Postives = 133/137 (97.08%), Query Frame = 1 Query: 190 ELKEFFSVYSKILVTYDDEDENNLESFDMSNDCMELCRPLIDSSILSKFIRYMCSKENEFFSETFCHKYFKRSRFSEYPEELINLNRVDAWNIDWAYGLVYQAFIAQEYNLELPCLKKRNRKIPIIGEKLKRSYKSK 600 E++EFF YSKILV YDDEDEN LESFDMSNDCMELCRPLIDSSILSKFIRYMCSKENEFFSETFCHKYFKRSRFSEYPEELINLNRVDAWNIDWAYGLVYQAFIAQEYNLELPCLKKRNRKIPIIGEKLKRSYKSK Sbjct: 29 EVEEFF--YSKILVAYDDEDENYLESFDMSNDCMELCRPLIDSSILSKFIRYMCSKENEFFSETFCHKYFKRSRFSEYPEELINLNRVDAWNIDWAYGLVYQAFIAQEYNLELPCLKKRNRKIPIIGEKLKRSYKSK 163 HSP 3 Score: 61.2326 bits (147), Expect = 2.876e-158 Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 3 Query: 51 MKINITMAFDPLLINVTSYDLFYGDDYSEV 140 MKINITMAFDPLLINVTS DLFYGDDYSEV Sbjct: 1 MKINITMAFDPLLINVTSSDLFYGDDYSEV 30
BLAST of Transcription factor ETV6 vs. Planmine SMEST
Match: SMESG000035130.1 (SMESG000035130.1) HSP 1 Score: 274.633 bits (701), Expect = 1.022e-154 Identity = 132/138 (95.65%), Postives = 133/138 (96.38%), Query Frame = 2 Query: 581 KDPTN---LKNCKLTEKEDYKRKSPRDQVLLHIFILDLLMHPYYGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQLTKTAIHDYKVKRSKNELAKQLMEEALL 985 KDP +KNCKLTEKEDYKRKSPRDQVLLHIFILDLLMHPYYGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQLTKTAIHDYKVKRSKNELAKQLMEEALL Sbjct: 162 KDPIYDELIKNCKLTEKEDYKRKSPRDQVLLHIFILDLLMHPYYGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQLTKTAIHDYKVKRSKNELAKQLMEEALL 299 HSP 2 Score: 264.618 bits (675), Expect = 1.022e-154 Identity = 131/137 (95.62%), Postives = 133/137 (97.08%), Query Frame = 1 Query: 190 ELKEFFSVYSKILVTYDDEDENNLESFDMSNDCMELCRPLIDSSILSKFIRYMCSKENEFFSETFCHKYFKRSRFSEYPEELINLNRVDAWNIDWAYGLVYQAFIAQEYNLELPCLKKRNRKIPIIGEKLKRSYKSK 600 E++EFF YSKILV YDDEDEN LESFDMSNDCMELCRPLIDSSILSKFIRYMCSKENEFFSETFCHKYFKRSRFSEYPEELINLNRVDAWNIDWAYGLVYQAFIAQEYNLELPCLKKRNRKIPIIGEKLKRSYKSK Sbjct: 23 EVEEFF--YSKILVAYDDEDENYLESFDMSNDCMELCRPLIDSSILSKFIRYMCSKENEFFSETFCHKYFKRSRFSEYPEELINLNRVDAWNIDWAYGLVYQAFIAQEYNLELPCLKKRNRKIPIIGEKLKRSYKSK 157 HSP 3 Score: 49.2914 bits (116), Expect = 1.022e-154 Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 3 Query: 69 MAFDPLLINVTSYDLFYGDDYSEV 140 MAFDPLLINVTS DLFYGDDYSEV Sbjct: 1 MAFDPLLINVTSSDLFYGDDYSEV 24
BLAST of Transcription factor ETV6 vs. Planmine SMEST
Match: SMESG000069597.1 (SMESG000069597.1) HSP 1 Score: 112.849 bits (281), Expect = 3.419e-35 Identity = 55/102 (53.92%), Postives = 69/102 (67.65%), Query Frame = 2 Query: 635 RKSPRDQVLLHIFILDLLMHPYYGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQLTKTAIHDYKVKR 940 R +PR+Q+ L IFILDLL HPYY CI W +K F+I NS+ VA+ WM +K NDTCN+ENFARGIR+ RR F + NK + YQ K AI +Y+ KR Sbjct: 175 RDAPRNQIGLLIFILDLLNHPYYKGCIRWVDKGSLIFKIINSKLVAYYWMVVKENDTCNFENFARGIRYLRR-VGFFKQINKKAQRTYQFNKKAIKEYEKKR 275 HSP 2 Score: 54.6842 bits (130), Expect = 3.419e-35 Identity = 34/109 (31.19%), Postives = 56/109 (51.38%), Query Frame = 1 Query: 256 NLES--FDMSNDCMELCRPLIDSSILSKFIRYMCSKENEFFSETFCHKYFKRSRFSEYPEELINLNRVDAWNIDWAYGLVYQAFIAQEYNLELPCLKKRNRKIPIIGEK 576 NLE D ++ C++ P I + F+ +M S+E + ETF KYF + + + ++ R W + YGL QA+I ++ LP + +RNRK PI+ +K Sbjct: 35 NLEETLIDETDICVDYICPEDSIIIQNNFVNFMKSQELHLYKETFIEKYF--TSYKCPTDHIVQRTRTQLWMENCIYGLQLQAYICMVKDIPLPIVPQRNRKQPILKKK 141
BLAST of Transcription factor ETV6 vs. Planmine SMEST
Match: SMESG000069596.1 (SMESG000069596.1) HSP 1 Score: 107.457 bits (267), Expect = 1.540e-29 Identity = 52/113 (46.02%), Postives = 73/113 (64.60%), Query Frame = 2 Query: 635 RKSPRDQVLLHIFILDLLMHPYYGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQLTKTAIHDYKVKRSKNELAKQLME 973 R +PR+Q+ + FILDLL HPY+ CI W +K TF+I NS+ VA+ WM +K NDTC++ENFARGIR+ R+ F + + + YQ K +I YK KR N L + L++ Sbjct: 207 RDAPRNQIGMLTFILDLLNHPYFEPCIKWEDKKSLTFKIINSKLVAYYWMIVKENDTCSFENFARGIRY-LRHWGYFKQIDMKKQRTYQFNKKSIQTYKSKRQNNNLTRVLID 318 HSP 2 Score: 40.817 bits (94), Expect = 1.540e-29 Identity = 26/83 (31.33%), Postives = 45/83 (54.22%), Query Frame = 1 Query: 316 SSILSKFIRYMCSKENEFFSETFCHKYFKRSRFSEYPEELINLNRVDAWNIDWAYGLVYQAFIAQEYNLELPCLKKRNRKIPI 564 SSI FI + + E + F++TF KYF ++ ++++ +R W + YGL Q +I + +P ++ RNRK+PI Sbjct: 90 SSIQKDFINLVKNYELKEFNKTFVEKYF--ILYNCPLDDILKKSRSQLWMDNCIYGLQLQVYICMVNDYPIPTVQHRNRKVPI 170
BLAST of Transcription factor ETV6 vs. Planmine SMEST
Match: SMESG000069596.1 (SMESG000069596.1) HSP 1 Score: 107.842 bits (268), Expect = 1.751e-29 Identity = 52/113 (46.02%), Postives = 73/113 (64.60%), Query Frame = 2 Query: 635 RKSPRDQVLLHIFILDLLMHPYYGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRFKRRNSNMFTRTNKHNRCVYQLTKTAIHDYKVKRSKNELAKQLME 973 R +PR+Q+ + FILDLL HPY+ CI W +K TF+I NS+ VA+ WM +K NDTC++ENFARGIR+ R+ F + + + YQ K +I YK KR N L + L++ Sbjct: 136 RDAPRNQIGMLTFILDLLNHPYFEPCIKWEDKKSLTFKIINSKLVAYYWMIVKENDTCSFENFARGIRY-LRHWGYFKQIDMKKQRTYQFNKKSIQTYKSKRQNNNLTRVLID 247 HSP 2 Score: 40.4318 bits (93), Expect = 1.751e-29 Identity = 26/83 (31.33%), Postives = 45/83 (54.22%), Query Frame = 1 Query: 316 SSILSKFIRYMCSKENEFFSETFCHKYFKRSRFSEYPEELINLNRVDAWNIDWAYGLVYQAFIAQEYNLELPCLKKRNRKIPI 564 SSI FI + + E + F++TF KYF ++ ++++ +R W + YGL Q +I + +P ++ RNRK+PI Sbjct: 19 SSIQKDFINLVKNYELKEFNKTFVEKYF--ILYNCPLDDILKKSRSQLWMDNCIYGLQLQVYICMVNDYPIPTVQHRNRKVPI 99 The following BLAST results are available for this feature:
BLAST of Transcription factor ETV6 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Transcription factor ETV6 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of Transcription factor ETV6 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Transcription factor ETV6 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of Transcription factor ETV6 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Transcription factor ETV6 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Transcription factor ETV6 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of Transcription factor ETV6 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Transcription factor ETV6 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 3
BLAST of Transcription factor ETV6 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Transcription factor ETV6 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Transcription factor ETV6 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Transcription factor ETV6 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of Transcription factor ETV6 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30016899 ID=SMED30016899|Name=Transcription factor ETV6|organism=Schmidtea mediterranea sexual|type=transcript|length=1052bpback to top protein sequence of SMED30016899-orf-1 >SMED30016899-orf-1 ID=SMED30016899-orf-1|Name=SMED30016899-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=164bp MEMTIVKLRNSVIRFCFYFVFLSIELKEFFSVYSKILVTYDDEDENNLESback to top protein sequence of SMED30016899-orf-2 >SMED30016899-orf-2 ID=SMED30016899-orf-2|Name=SMED30016899-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=100bp MHPYYGFCITWSNKNDFTFEIKNSRAVAHIWMTIKGNDTCNYENFARGIRback to top Annotated Terms
The following terms have been associated with this transcript:
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