SWIM-type domain-containing protein

Overview
NameSWIM-type domain-containing protein
Smed IDSMED30016870
Length (bp)1816
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SWIM-type domain-containing protein (SMED30016870) t-SNE clustered cells

Violin plots show distribution of expression levels for SWIM-type domain-containing protein (SMED30016870) in cells (dots) of each of the 12 neoblast clusters.

 

back to top


 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SWIM-type domain-containing protein (SMED30016870) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SWIM-type domain-containing protein (SMED30016870) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top


 

Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020




SMED30016870

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30016870h1SMcG0001253 SmedASXL_008390SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30016870h1SMcG0001253 dd_Smed_v4_11948_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30016870h1SMcG0001253 dd_Smed_v4_11948_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30016870h1SMcG0001253 dd_Smed_v4_11948_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult colorimetric in situ hybridization evidence
head regionSMED30016870h1SMcG0001253 dd_Smed_v6_11948_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
head regionSMED30016870h1SMcG0001253 OX_Smed_1.0.10996ox_Smed_v2PMID:24238224
Kao et al., 2013
whole organism asexual adult RNA-sequencing evidence
central nervous systemSMED30016870h1SMcG0001253 KU961520smed_ncbi_20240424PMID:28137894
Seebeck et al., 2017
whole organism asexual adult fluorescence in situ hybridization evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SWIM-type domain-containing protein vs. TrEMBL
Match: A0A226EBP5 (MULE domain-containing protein OS=Folsomia candida OX=158441 GN=Fcan01_11709 PE=4 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.855e-32
Identity = 119/395 (30.13%), Postives = 178/395 (45.06%), Query Frame = 2
Query:  617 QPKATIREFRKVQEVPKRNQIVSYLGQHKKKIKGPCRINLTELEEMCKSHSKVRKQLLYH**XXXXXXXCSI*NKFYNNYFFITKRLLKFALTAVNMHADATYKLIWQSFPVLMVGTIDKQNHYITFGIAVTTSETGYDFEFIFNSVISGLKAIDISYKPKPKIIMTDAADSISNGFKQVFEVD--------SRCKR-SNHK------------------------------AAELFIDKWYENEEKFTAYFRKEWLDAHVGGYEGFTPGYTSHNNSLGGTNEDLKSSHTITECLPIKD---FL*QQLKL--------SKSGRLVIIQRKIVP*P*PMHTSSFKKIKK---LHVNDSNESNLIYSISAKDLPAITISKVNSYKKKIKNYDWKDFD 1642
            +P    R  ++   + K+ QI +YL   K++ +GP  I+L EL+     +S++   L                N+ +   F  TKRLL  AL    +H DATYKL W+ FPVL++G  DK  H+   GI+VT SET  DFEF+F S+++      + +   PKI++ DAA++I+N FK VF  D          CK   +HK                              A  LF  K+ E+ + F  YF+ E +    G YEG   GY S NN L  TN  +K   T  ECL + D   F  QQ K+        +   +L I    +      M T++F+ + K   +    S +S +++ ISA   P +    +N + +  +   WK FD
Sbjct:  132 KPTTIKRALQQQNIIIKKTQIANYLAS-KRRNRGPKIISLGELQAEANKYSQLPHDLDEPYVDNSGLEFEE--NQKWFGVFLSTKRLLDIALQTQVIHCDATYKLSWEGFPVLVIGVSDKDRHFHPLGISVTASETTRDFEFLFRSMVTS-----VGHNYSPKILIADAAEAITNAFKTVFGDDFIRVFCWFHLCKNIDSHKSLVKDKNLWAGIKKNMSQLQLAKSVEEFNVAQTLFCQKYKESAKDFIEYFKNEHIAQRCGWYEGLALGYPSTNNGLESTNGWIKKQGTFRECLSMGDLFRFFMQQCKVWSDERNPATPDAKLFIHTPTLTL---QMQTNAFQWMTKKPDIKYRTSGDS-ILHFISASGKPKLKEDDINKFLRMNEKLSWKSFD 514          
BLAST of SWIM-type domain-containing protein vs. TrEMBL
Match: A0A226DW34 (MULE domain-containing protein OS=Folsomia candida OX=158441 GN=Fcan01_15770 PE=4 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.614e-28
Identity = 101/316 (31.96%), Postives = 148/316 (46.84%), Query Frame = 2
Query:  857 FFITKRLLKFALTAVNMHADATYKLIWQSFPVLMVGTIDKQNHYITFGIAVTTSETGYDFEFIFNSVISGLKAIDISYKPKPKIIMTDAADSISNGFKQVFEVD--------SRCKRSNHK-------------------------------AAELFIDKWYENEE--KFTAYFRKEWLDAHVGGYEGFTPGYTSHNNSLGGTNEDLKSSHTITECLPIKDFL---*QQLKLSKSGRLVIIQRKIVP*P*P-----MHTSSFKKIK-----KLHVNDSNESNLIYSISAKDLPAITISKVNSYKKKIKNYDWKDFD 1642
            +  T+RLL+ A  +  +H+DATYKL WQ +PV++ G  D+   +   G+AVT++ET  DF+FIF S+  G      S K KP I++ DAA+SI+NGFK+VF  D          CK  + +                               A ELF+ K+    +  +F AYF++E LD   G YEG   G+ S NN + GTN  +K   T  E L I   L     Q ++    R+  I+   +    P     + TS+F  ++     K H  D N +   Y ISA + P +    +N Y +  +   WK FD
Sbjct:  206 YITTRRLLQIAELSTAVHSDATYKLCWQGYPVILTGVSDQDRTFHPTGMAVTSAETSADFKFIFESLKMG-----TSEKYKPTILIADAAESITNGFKEVFGCDITRIYCWFHLCKNIDARQSTIKNKELWRKLRGDVNELQLARSPEDFLAAKELFLKKYRTEADLTQFMAYFKQEHLDTRDGWYEGHCMGFPSTNNGIEGTNAWIKRQGTFRERLSIGQLLQYMTNQTEIWSKERIPGIRDAKLFHEEPSLSLALQTSAFNWVQNKPDIKYHTCDDNITT--YFISAANQPKLKEDDINKYLRLRERRSWKTFD 514          
BLAST of SWIM-type domain-containing protein vs. TrEMBL
Match: A0A226D5N1 (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Folsomia candida OX=158441 GN=Fcan01_25381 PE=4 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.390e-26
Identity = 117/424 (27.59%), Postives = 178/424 (41.98%), Query Frame = 2
Query:  584 LITTWYSQNIKQPKATIREFRKVQ-EVPKRNQI---VSYL-GQHKKKIKGPCRINLTELEEMCKSHSKVRKQLLYH**XXXXXXXCSI*NKFYNNY-----------FFITKRLLKFALTAVNMHADATYKLIWQSFPVLMVGTIDKQNHYITFGIAVTTSETGYDFEFIFNSVISGLKAIDISYKPKPKIIMTDAADSISNGFKQVFEVD--------------------SRCKRSNHK--------------------AAELFIDKWYENEEK-FTAYFRKEWLDAHVGGYEGFTPGYTSHNNSLGGTNEDLKSSHTITECLPIKDFL*QQLKLSKSGRL----VIIQRKIVP*P*P-----MHTSSF-----KKIKKLHVNDSNESNLIYSISAKDLPAITISKVNSYKKKIKNYDWKDFD 1642
            +I +     I QPK      R+   + P R QI   ++YL  + + +I     ++L ++ ++C+  S++  Q+                + F   Y           F  TKRLL        + ADATYKL W+ FPVL+VGT DK +H+  FGIA+T+ ET  D    F+SV   LK  D ++  +P++++ D A++I+N F+ VF V+                    S+   S  K                    A +LFI KW   + K F  YF  E+L+   G YEG+ PGY   NN     N  +K+ +T  + LP+ +      K+     L    V +  KI     P     + T SF     KK   L         ++Y I+   LPA+    +  Y  K+    W  FD
Sbjct:  122 IIDSLRKDGITQPKLIQTNLRRQGIDPPSRTQISNRINYLNSKDENRI-----VSLGQISDLCRRSSEIPTQMD---------------DAFVAGYSIEFEIKRFSLFMSTKRLLSMTSQCKLLQADATYKLNWEGFPVLVVGTSDKDSHFHPFGIAITSGETVED----FSSVFQVLKGYDENF--EPEVLVADCAEAITNAFQTVFRVEFKRVYCWFHVKQNVKKFLKSSKIPESQKKGISFDIDCLQLADNEEEFNIAKKLFIKKWKTGDTKDFYDYFETEYLNQRNGWYEGYAPGYPCTNNGPEAINATIKNENTFRKRLPLGELFVTLKKIVSGWSLDRNPVSLDCKIFATS-PTYSLQLQTKSFNWSIDKKRAPLKSKKGCPGTVVYYITPSGLPALKSEDIIQYNNKMCKKTWTKFD 518          
BLAST of SWIM-type domain-containing protein vs. TrEMBL
Match: A0A4Y2WAS5 (SWIM-type domain-containing protein OS=Araneus ventricosus OX=182803 GN=AVEN_1295_1 PE=4 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.925e-22
Identity = 75/219 (34.25%), Postives = 102/219 (46.58%), Query Frame = 2
Query:  866 TKRLLKFALTAVNMHADATYKLIWQSFPVLMVGTIDKQNHYITFGIAVTTSETGYDFEFIFNSVISGLKAIDISYKPKPKIIMTDAADSISNGFKQVF---------------EVDSRCKRSNHK---------------------AAELFIDKWYE----NEEKFTAYFRKEWLDAHVGGYEGFTPGYTSHNNSLGGTNEDLKSSHTITECLPIKDFL 1402
            TKRLL+  +    +  DATYKLIWQ +PVL+VG+ D    +  F IAV  +ET  DF FIF  V      I+ + +  PKI++ DA+ +I+NGFK VF                +D + +    K                      +ELF+ KW E    N   FT YF+  WL ++   Y G    +   NN L  TN  +K  HT  E LP+  FL
Sbjct:  220 TKRLLRLMIKTEGVQTDATYKLIWQGYPVLIVGSSDMNRTFHPFAIAVCNNETESDFAFIFKCVKDSCYKINET-EWNPKILLADASSAITNGFKAVFGFPFRRLMCYFHAVKNIDGKLRGIQDKDEIRNDIECLHLCPDDETFNIVSELFLKKWKEKNDVNITTFTEYFKSVWLTSNRHWYIGSRNYFPITNNGLEATNAVIKKEHTFRERLPVGQFL 437          
BLAST of SWIM-type domain-containing protein vs. TrEMBL
Match: A0A4C1WBL2 (MULE domain-containing protein OS=Eumeta variegata OX=151549 GN=EVAR_32812_1 PE=4 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.299e-21
Identity = 67/218 (30.73%), Postives = 103/218 (47.25%), Query Frame = 2
Query:  866 TKRLLKFALTAVNMHADATYKLIWQSFPVLMVGTIDKQNHYITFGIAVTTSETGYDFEFIFNSVISGLKAIDISYKPKPKIIMTDAADSISNGFKQVF---------------EVDSRCKRSNHK------------------------AAELFIDKWYENEEKFTAYFRKEWLDAHVGGYEGFTPGYTSHNNSLGGTNEDLKSSHTITECLPIKDFL 1402
            TK L++ +  A  +HADATYKLIWQ FPVL+ GT D+   +    + + ++E   DF+ +F  +   ++ I       PK+++ DAA SI N F +VF               +   R +R  +K                        A+E F+ K YE+E +F  YFR +WL  ++  + G      S NN+L   N  +K S+T+ E  P+  FL
Sbjct:    3 TKYLIEISKDASVVHADATYKLIWQGFPVLVCGTTDQSRKFHPLCVTIPSNEQKEDFKLMFQGLKDKIQEI-FESSWNPKVLVCDAAKSIQNAFLEVFGEHVVVRMCWAHAKRKFQERIERIKNKELRDNILNDVDSLHSITDANIFDAASEAFVQK-YEDEIEFVTYFRAQWLVQNLNWFLGAASNSPSTNNALESFNRVIKDSNTLRERFPLSRFL 218          
BLAST of SWIM-type domain-containing protein vs. Planmine SMEST
Match: SMESG000018926.1 (SMESG000018926.1)

HSP 1 Score: 214.927 bits (546), Expect = 3.261e-59
Identity = 103/106 (97.17%), Postives = 104/106 (98.11%), Query Frame = 2
Query:  914 DATYKLIWQSFPVLMVGTIDKQNHYITFGIAVTTSETGYDFEFIFNSVISGLKAIDISYKPKPKIIMTDAADSISNGFKQVFEVDSRCKRSNHKAAELFIDKWYEN 1231
            DATYKLIWQSFPVLMVGTIDKQNHYITFGIAVTTSETGYDFEFIFNSVISGLKAIDISYKPKPKIIMTDAADSISNGFKQVFEVDSRCKRSNHKAAELFIDK  +N
Sbjct:  881 DATYKLIWQSFPVLMVGTIDKQNHYITFGIAVTTSETGYDFEFIFNSVISGLKAIDISYKPKPKIIMTDAADSISNGFKQVFEVDSRCKRSNHKAAELFIDKCLQN 986          
BLAST of SWIM-type domain-containing protein vs. Planmine SMEST
Match: SMESG000040512.1 (SMESG000040512.1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.140e-16
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 2
Query:  854 YFFITKRLLKFALTAVNMHADATYKLIWQSFPVLMVGTIDKQNHYITFGIAVTTSETGYDFEFIFNSVISGLK 1072
            +F  T RLLK A  +  ++ADATYKL+WQ +P+L++GT D   H+ +FG+ + T+E   DF FIF+S+  GLK
Sbjct:   89 FFISTIRLLKLASASTILNADATYKLVWQGYPILIIGTTDLDRHFHSFGLGICTNEKTADFNFIFSSINIGLK 161          
BLAST of SWIM-type domain-containing protein vs. Planmine SMEST
Match: SMESG000041932.1 (SMESG000041932.1)

HSP 1 Score: 60.4622 bits (145), Expect = 4.794e-10
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 2
Query: 1190 HKAAELFIDKWYENEEKFTAYFRKEWLDAHVGGYEGFTPGYTS 1318
            ++A++LFIDKWYE EEKFTAYFRK+ LDAHV  YE     + S
Sbjct:   42 NEASKLFIDKWYEKEEKFTAYFRKKCLDAHVRWYEDVNSQFKS 84          
The following BLAST results are available for this feature:
BLAST of SWIM-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SWIM-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SWIM-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SWIM-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SWIM-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SWIM-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SWIM-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SWIM-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A226EBP52.855e-3230.13MULE domain-containing protein OS=Folsomia candida... [more]
A0A226DW349.614e-2831.96MULE domain-containing protein OS=Folsomia candida... [more]
A0A226D5N15.390e-2627.59Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Fo... [more]
A0A4Y2WAS56.925e-2234.25SWIM-type domain-containing protein OS=Araneus ven... [more]
A0A4C1WBL25.299e-2130.73MULE domain-containing protein OS=Eumeta variegata... [more]
back to top
BLAST of SWIM-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SWIM-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SWIM-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SWIM-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SWIM-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SWIM-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000018926.13.261e-5997.17SMESG000018926.1[more]
SMESG000040512.11.140e-1647.95SMESG000040512.1[more]
SMESG000041932.14.794e-1062.79SMESG000041932.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30016870 ID=SMED30016870|Name=SWIM-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1816bp
ATCAAATTAAAATTTATTTCGCAATTTTGATTCAATAAAAATGTTAAAAT
TTTTTGTGAAATAAAAAACACTGCGTGTCATATTTAGTTGACGGAGAACT
TACTTAGTGTGTTATAAAATTATAAAATTTCCATGCGAATTTGCGTAACT
GATACAATGAACTTGTTGGGATTGTTTACAGTGTGCAGCACAGGAGATAA
TGCACTGAGAATAGAAAGCGGATCAATAAAAAGAGTAAATATTGGAATAT
TTACCACTAATAAAAACATGCAAAGAAATTTATTAAAAATTGATATATTG
CGAGAGATACCGATACAAAGTCCTCAGAAAATGATGTTCAATAACATAAA
ATGTAAAAACCTCAAACCATATGAGAAACACGAGGCATGTGGAAAACCTG
AAAAGATAATTAGTTCAATTCTCTTATAAAATCAATAAACAGAACTAGTT
TCAAAGTTAGTAGAGTTAAGAAGCCGTCTAACTAATTAGGGTAGCGAAAA
ACAAAATAATTATTTGGTTGAAACTTAATCTGATAGGTATTACTCATGAC
AATAAGAAAACGAAGTTTAACAAAAAAAGAAAGCTAATAACCACATGGTA
CAGTCAAAACATCAAACAACCAAAAGCAACCATTCGTGAATTTCGTAAAG
TTCAAGAAGTTCCAAAGCGAAATCAAATCGTAAGTTATTTAGGTCAACAT
AAAAAGAAAATTAAAGGTCCATGCCGAATCAATTTGACTGAGCTTGAAGA
AATGTGCAAATCTCACTCTAAAGTACGTAAGCAGTTATTATATCACTGAT
GAAGAATTAGAAGATGAAGAAGATGCAGTATATGAAATAAATTTTACAAT
AATTATTTTTTTATAACTAAAAGATTACTCAAATTTGCATTAACAGCTGT
AAATATGCATGCAGACGCAACCTACAAATTAATTTGGCAAAGCTTTCCAG
TTCTAATGGTTGGAACTATAGACAAGCAAAATCACTATATTACATTTGGC
ATTGCGGTTACAACATCAGAAACAGGTTATGATTTTGAATTTATATTCAA
TAGTGTAATTTCAGGTCTCAAAGCAATCGATATAAGTTATAAACCAAAAC
CAAAGATAATAATGACTGATGCAGCTGATTCAATTTCAAATGGATTCAAA
CAAGTATTTGAAGTAGACAGTCGATGCAAACGAAGCAATCACAAGGCAGC
TGAATTATTTATTGATAAGTGGTATGAAAACGAAGAAAAATTTACAGCAT
ATTTTAGAAAAGAGTGGTTAGATGCACATGTTGGAGGGTATGAAGGTTTT
ACACCTGGCTACACCTCACACAACAATTCTCTTGGAGGTACAAATGAAGA
TTTAAAATCAAGTCACACTATCACAGAATGTTTACCAATCAAAGATTTTT
TATAGCAGCAATTAAAATTGTCAAAGAGTGGTCGATTGGTAATAATCCAA
AGAAAAATTGTACCATAACCTTAGCCAATGCATACCAGTAGTTTCAAAAA
GATAAAAAAACTGCATGTGAATGACTCAAATGAATCAAATTTGATTTATT
CCATATCTGCAAAGGATTTGCCAGCAATTACAATATCAAAAGTCAACTCT
TACAAAAAGAAAATAAAAAATTATGATTGGAAAGATTTCGATGATAATGC
AAAAGTGTTACAAATTTATGGCAAATTCCAATTACTAAAGAAGCTATTTT
AGAAAATCAAAAATAGATAAATGGATCTTGTACATGTCCAGAGTTTTCCA
AAAAGCATGCATGCAAGTATTTAATTGGATTAGCATTTAGAATAGGGTTG
CCATAATTCTCGGACT
back to top

protein sequence of SMED30016870-orf-1

>SMED30016870-orf-1 ID=SMED30016870-orf-1|Name=SMED30016870-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=167bp
MHADATYKLIWQSFPVLMVGTIDKQNHYITFGIAVTTSETGYDFEFIFNS
VISGLKAIDISYKPKPKIIMTDAADSISNGFKQVFEVDSRCKRSNHKAAE
LFIDKWYENEEKFTAYFRKEWLDAHVGGYEGFTPGYTSHNNSLGGTNEDL
KSSHTITECLPIKDFL*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR018289MULE_transposase_dom