SMED30016784

Overview
NameSMED30016784
Smed IDSMED30016784
Length (bp)1369
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30016784 (SMED30016784) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30016784 (SMED30016784) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30016784 (SMED30016784) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30016784 (SMED30016784) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30016784

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30016784SMESG000033408.1 dd_Smed_v4_14494_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30016784SMESG000033408.1 dd_Smed_v4_14494_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SMED30016784 vs. TrEMBL
Match: A0A4Z2DD02 (Uncharacterized protein OS=Schistosoma japonicum OX=6182 GN=EWB00_002261 PE=4 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.713e-20
Identity = 87/277 (31.41%), Postives = 140/277 (50.54%), Query Frame = 2
Query:  458 NEIPYRINEIVKISE-TKPKINSRDSLQHRLCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRK-RMKICYLMTIACGVXXXXXXXXXXXXXXXXGVHGNWISGHSDNC-------------------LSKDDNNQNDMLL-ACCYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWLLQMTIQRLIQDCSTT-------SQTRSGQPNTD 1201
            N +   +N++  I   T    N  DS    LC + VLLVCM++ +G T TGLG+FL      ++ K+CA+ +G PL+ SG    FI  +R++      ++  ++ +  G++SF C I+CL++S+++G  G+ I+ + + C                   ++ + +N N   +  CCY+I        + +TC C        S       Y NL+CR +FS++KDY+ILQ ALMGVGSGV LW   + I+  ++    +       S TRS  P T 
Sbjct:  549 NSVDLELNKLDTIQNITDLHTNKGDSFTRCLCSLIVLLVCMQLAVGITSTGLGLFLTWKVPELEPKECAYLSGIPLIISGFIGTFIC-FRHRFPSISPELMNIIQLTSGILSFGCFIICLITSVYAGQKGSEIASYENTCRIVTIKQNEQQSTNKVLYPVTMNYSNTNHYFIEPCCYEI--------VKNTCECFTITGQRIS------CYHNLSCRLLFSSIKDYIILQSALMGVGSGVSLWSWLLVIENKLKYLLNSKYVRMSFSSTRSSVPETS 810          
BLAST of SMED30016784 vs. TrEMBL
Match: A0A4E0RIR9 (Uncharacterized protein OS=Fasciola hepatica OX=6192 GN=D915_000341 PE=4 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.619e-19
Identity = 73/216 (33.80%), Postives = 107/216 (49.54%), Query Frame = 2
Query:  545 LCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMTIACGVXXXXXXXXXXXXXXXXGVHGNWISGHSDNCLSKD-------------------DNNQNDMLLA----CCYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWL 1123
             C++ VLLV M+I LG   TGLG++L      + +++C+FWA  P+  +GLF  +    R   RK  +I   +    G +S I  ILCL++SIFSG  G+ I+ +  +C+  +                      + D  L     CC D    G++      C C   R  +        +Y  + CRY+FS++KDYLILQ ALM VG+GVCLW 
Sbjct:  537 FCQLIVLLVSMQISLGLAATGLGLYLRWRVPLLPLEECSFWAALPITITGLFGTYFCFQRRISRKNPQITLAIRRIAGALSLISCILCLVASIFSGQKGSLIATYGTDCIPSNPLYSIHNSSIKNNDNSNNNQEKKTDYDLGFEQQCCID----GVDRMSEPLCQCFNVRNQLM------WSYRGIACRYLFSSVKDYLILQSALMAVGTGVCLWF 742          
BLAST of SMED30016784 vs. TrEMBL
Match: A0A504YEC9 (Uncharacterized protein OS=Fasciola gigantica OX=46835 GN=FGIG_08303 PE=4 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.895e-18
Identity = 75/225 (33.33%), Postives = 109/225 (48.44%), Query Frame = 2
Query:  518 NSRDSLQHRLCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMTIACGVXXXXXXXXXXXXXXXXGVHGNWISGHSDNCLSKDD-------------------NNQNDMLLA----CCYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWL 1123
            N R S     C++ VLLV M+I LG   TGLG++L      + +++C+FWA  P+  +G    +    R   RK  +I   +    GV+S I  ILCL++SIFSG  G+ I+ +  +C+  +                      + D  L     CC D    G++      C C   R  +        +Y  + CRY+FS++KDYLILQ ALM VG+GVCLW 
Sbjct:  529 NRRSSRGLCFCQLIVLLVSMQISLGLAATGLGLYLRWRVPLLPLEECSFWAALPISITGFIGTYFCFQRRISRKNPQITLAIRRIAGVLSLISCILCLVASIFSGQKGSLIATYGTDCIPSNPLYSVHNSSIKNNNNSNNSLERKPDYDLGFEQQCCID----GVDRMSEPLCQCFNVRNQLM------WSYRGIACRYLFSSVKDYLILQSALMAVGTGVCLWF 743          
BLAST of SMED30016784 vs. TrEMBL
Match: A0A4S2MH70 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_000928 PE=4 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.378e-17
Identity = 77/214 (35.98%), Postives = 114/214 (53.27%), Query Frame = 2
Query:  545 LCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLF-EVFIYNWRNKLRKRMKICYLMTIACGVXXXXXXXXXXXXXXXXGVHGNWISGHSDNCLS------KDDNNQNDMLL----ACCYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWL-LQMTIQRLI 1150
             C++ VLLV M+I+LG + T LG +L      + +++CAFWA  PL F+G+   +F +  R + R        M  A G++S I  +LCL++SIFSG  GN I+     C S        +  Q+  L      CC D  T G++   ++ C C   R  +        +Y  + CRY+ S++KDYLILQ ALM V +GVCLW  + +T QR +
Sbjct:  470 FCQLHVLLVIMQIVLGVSTTALGFYLHWKIPLLPLEECAFWAAIPLSFTGMIGSLFCFENRCQ-RFNRSYSVSMRRATGILSLISCVLCLVASIFSGQKGNVIATSGHPCQSIRLTTQTKNATQSSGLPEYEHQCCSD--TSGLDG--HNVCQCLNMRNQV------IWSYHKITCRYLISSVKDYLILQSALMAVAAGVCLWFWVVLTEQRYV 672          
BLAST of SMED30016784 vs. TrEMBL
Match: A0A419Q0G8 (Uncharacterized protein OS=Clonorchis sinensis OX=79923 GN=CSKR_3134s PE=4 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.378e-17
Identity = 76/214 (35.51%), Postives = 114/214 (53.27%), Query Frame = 2
Query:  545 LCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLF-EVFIYNWRNKLRKRMKICYLMTIACGVXXXXXXXXXXXXXXXXGVHGNWI--SGHSDNCLSKDDNNQN--------DMLLACCYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWL-LQMTIQRLI 1150
             C++ VLLV M+I+LG + T LG +L      + +++CAFWA  PL F+G+   +F +  R +L  R      M  A G+++ I  +LCL++SIFSG  GN I  SGH    +      +N        +    CC D  T  ++   ++ C C   R  +        +Y  + CRY+ S++KDYLILQ ALM V +GVCLW  + +T QR +
Sbjct:  470 FCQLHVLLVIMQIVLGMSTTALGFYLHWKIPLLPLEECAFWAAIPLSFTGIIGSLFCFENRCQLFNR-SYSVSMRRATGILTLISCVLCLVASIFSGQKGNVIASSGHPCQIVRPTTQTKNATQSSGLPEYEHQCCSD--TSSLDG--HNVCQCLNMRNQV------IWSYHKITCRYLISSVKDYLILQSALMAVAAGVCLWFWVVLTEQRYV 672          
BLAST of SMED30016784 vs. Planmine SMEST
Match: SMESG000033408.1 (SMESG000033408.1)

HSP 1 Score: 873.233 bits (2255), Expect = 0.000e+0
Identity = 451/451 (100.00%), Postives = 451/451 (100.00%), Query Frame = 2
Query:   17 MMYNQSSDKVEWGHMKMPEIIIDSDNESTTKNYDNESYNNCFLKANREESNHLTCKSNLDDADSGIHESNDIFLPGISSVLHPNRLSLRDMKKRSNLSEVRSYSTNCLSVDTNRYKEGLGMIDPRLCRNCSTKSHSKKQFDSIKREPNEIPYRINEIVKISETKPKINSRDSLQHRLCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMTIACGVXXXXXXXXXXXXXXXXGVHGNWISGHSDNCLSKDDNNQNDMLLACCYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWLLQMTIQRLIQDCSTTSQTRSGQPNTDDQNSVGQSPVIPLKIRCIQVNEKSQILNDYIREKSXXXXXXXXXRFHSELYKPNPE 1369
            MMYNQSSDKVEWGHMKMPEIIIDSDNESTTKNYDNESYNNCFLKANREESNHLTCKSNLDDADSGIHESNDIFLPGISSVLHPNRLSLRDMKKRSNLSEVRSYSTNCLSVDTNRYKEGLGMIDPRLCRNCSTKSHSKKQFDSIKREPNEIPYRINEIVKISETKPKINSRDSLQHRLCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMTIACGVISFICSILCLLSSIFSGVHGNWISGHSDNCLSKDDNNQNDMLLACCYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWLLQMTIQRLIQDCSTTSQTRSGQPNTDDQNSVGQSPVIPLKIRCIQVNEKSQILNDYIREKSNNFNYINNNRFHSELYKPNPE
Sbjct:    1 MMYNQSSDKVEWGHMKMPEIIIDSDNESTTKNYDNESYNNCFLKANREESNHLTCKSNLDDADSGIHESNDIFLPGISSVLHPNRLSLRDMKKRSNLSEVRSYSTNCLSVDTNRYKEGLGMIDPRLCRNCSTKSHSKKQFDSIKREPNEIPYRINEIVKISETKPKINSRDSLQHRLCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMTIACGVISFICSILCLLSSIFSGVHGNWISGHSDNCLSKDDNNQNDMLLACCYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWLLQMTIQRLIQDCSTTSQTRSGQPNTDDQNSVGQSPVIPLKIRCIQVNEKSQILNDYIREKSNNFNYINNNRFHSELYKPNPE 451          
BLAST of SMED30016784 vs. Planmine SMEST
Match: SMESG000033408.1 (SMESG000033408.1)

HSP 1 Score: 869.766 bits (2246), Expect = 0.000e+0
Identity = 450/450 (100.00%), Postives = 450/450 (100.00%), Query Frame = 2
Query:   20 MYNQSSDKVEWGHMKMPEIIIDSDNESTTKNYDNESYNNCFLKANREESNHLTCKSNLDDADSGIHESNDIFLPGISSVLHPNRLSLRDMKKRSNLSEVRSYSTNCLSVDTNRYKEGLGMIDPRLCRNCSTKSHSKKQFDSIKREPNEIPYRINEIVKISETKPKINSRDSLQHRLCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMTIACGVXXXXXXXXXXXXXXXXGVHGNWISGHSDNCLSKDDNNQNDMLLACCYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWLLQMTIQRLIQDCSTTSQTRSGQPNTDDQNSVGQSPVIPLKIRCIQVNEKSQILNDYIREKSXXXXXXXXXRFHSELYKPNPE 1369
            MYNQSSDKVEWGHMKMPEIIIDSDNESTTKNYDNESYNNCFLKANREESNHLTCKSNLDDADSGIHESNDIFLPGISSVLHPNRLSLRDMKKRSNLSEVRSYSTNCLSVDTNRYKEGLGMIDPRLCRNCSTKSHSKKQFDSIKREPNEIPYRINEIVKISETKPKINSRDSLQHRLCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMTIACGVISFICSILCLLSSIFSGVHGNWISGHSDNCLSKDDNNQNDMLLACCYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWLLQMTIQRLIQDCSTTSQTRSGQPNTDDQNSVGQSPVIPLKIRCIQVNEKSQILNDYIREKSNNFNYINNNRFHSELYKPNPE
Sbjct:    1 MYNQSSDKVEWGHMKMPEIIIDSDNESTTKNYDNESYNNCFLKANREESNHLTCKSNLDDADSGIHESNDIFLPGISSVLHPNRLSLRDMKKRSNLSEVRSYSTNCLSVDTNRYKEGLGMIDPRLCRNCSTKSHSKKQFDSIKREPNEIPYRINEIVKISETKPKINSRDSLQHRLCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMTIACGVISFICSILCLLSSIFSGVHGNWISGHSDNCLSKDDNNQNDMLLACCYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWLLQMTIQRLIQDCSTTSQTRSGQPNTDDQNSVGQSPVIPLKIRCIQVNEKSQILNDYIREKSNNFNYINNNRFHSELYKPNPE 450          
BLAST of SMED30016784 vs. Planmine SMEST
Match: SMESG000063964.1 (SMESG000063964.1)

HSP 1 Score: 142.895 bits (359), Expect = 4.296e-38
Identity = 86/241 (35.68%), Postives = 130/241 (53.94%), Query Frame = 2
Query:  524 RDSLQHRLCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMTIACGVXXXXXXXXXXXXXXXXGVHGNWISGHSDNC---LSKDDNNQNDMLLACCYDIHTKGINS----SINST-CFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWLLQMTIQRLIQDCSTTSQTRSGQPNTDDQNSVGQ 1222
            ++  + + C+I VLL+ M++ LG +M+GLG++L   S S+  KDC +WAG PLL SG F ++     +++ KR  +  L+ I C  +S + + L L +SI SG HG WIS  S  C     ++ +  +     CC D HT  +       +N T C C+ A    +S       Y  + CRYVFSALKDY ILQ +LMGV +GVC+W++ +             Q +  QPN  DQ ++ +
Sbjct:   94 KEKFEIQFCRINVLLISMQLGLGFSMSGLGVYLRSVSPSLTWKDCTYWAGLPLLCSGAFGLYFCLSDHEIYKRSHLSRLVKIVCACMSVVTAALTLSASIMSGTHGKWISDFSSTCDLHFIREHSETDSYPDKCCEDKHTHPMPRHKLLPMNDTMCVCKTAPFGNFSLLKFEREYAAVTCRYVFSALKDYFILQSSLMGVATGVCIWIVIL-------------QIKDEQPNMIDQENISR 321          
BLAST of SMED30016784 vs. Planmine SMEST
Match: SMESG000061752.1 (SMESG000061752.1)

HSP 1 Score: 119.783 bits (299), Expect = 2.399e-29
Identity = 124/417 (29.74%), Postives = 198/417 (47.48%), Query Frame = 2
Query:   59 MKMPEIIIDSDNESTTKNYDNESYNNCFLKANR----EESNHLTCKSNLDDADSGIHESNDIFLPG--------ISSVL--HPN-----------RLSLRDMKKRSNLSEVRSYSTNCLSVDTNRYKEGLGMIDPRLCRNCSTKSHSKKQF------DSIKREPNEIPYRINEIVK--ISETKPKINSRDSLQHRLCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMTIACGVXXXXXXXXXXXXXXXXGVHGNWISGHSDNCLSKDDNNQNDML-----LACCY---------DIHTKGI------NSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWLLQMTIQRLI 1150
            M  P I+IDS++ S   + +   Y    +K +     + S  +  KSN DD DSGIH S+++F P         I + L  HP              SL + K+    S ++       S+DT R         P   +      H +  +      DS+K     I  R + + K  +  T+P   + +     LC+I++LL+ MKI+LGS++T  G+ L   SKS+++KDC +WA   L+ SGL  ++ +   N      K+ ++ T    + S   SI+CL++SI+SGVHGNWIS H++ C  K      D +     L CC+         +I   GI      N + +++C C ++      KP     Y  L+C+Y+FS+LKD+ +L C+LMGVG G  +W +   I+ + 
Sbjct:    1 MDFPVIVIDSNSNSIKDSEEGIDYLRPSVKDDYNFLVKNSLQIQSKSN-DDGDSGIHGSSEVFGPSPVPSHKMLIENDLMDHPTGTLKKTQLSLSASSLLERKRSFTRSFIKQTKNRNYSMDTGRPSSMPKRFSPY--KLMIVDEHGQPFYVQKINRDSVK----TIISRPDSLTKDNLVLTRPHDRNTEKFVSNLCQIQLLLIIMKIVLGSSITIFGLNLHGFSKSLQMKDCGYWASSILMVSGLISIY-FASENLYVLSQKMHHIYTFLVILFSGTSSIICLMASIYSGVHGNWISFHANECHLKAIMKSRDYMPMTNELNCCFNFPGKDKQKEIFNYGIIRNLIDNQTDSNSCGCFDSAL----KP--ERIYVGLSCKYLFSSLKDHFVLICSLMGVGCGCEIWFVLYLIKYVF 403          
BLAST of SMED30016784 vs. Planmine SMEST
Match: SMESG000071184.1 (SMESG000071184.1)

HSP 1 Score: 117.472 bits (293), Expect = 4.584e-29
Identity = 78/225 (34.67%), Postives = 122/225 (54.22%), Query Frame = 2
Query:  521 SRDSLQHRLCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMTIACGVXXXXXXXXXXXXXXXXGVHGNWISGHSDNC------LSKDDNNQNDMLLACCYDIHTKGINSSINSTCFCREARENI-------YSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWLLQMTIQRLIQD 1156
            S++ L+  +C+I VLLV M++ LGS+M  LG++L   S ++ +KDC +WA  PLL +G   ++  +   K+ K+  +  ++       S +CS+LC L+S FSG HGNW++ +   C       S+  +  N    +CC  +    +       C C   RE         Y+K    ++Y N+NC YVFS+LKDYLILQCAL  V +GV +WL  +   + + D
Sbjct:   95 SKEKLELHICRINVLLVMMQLGLGSSMAALGLYLHNLSPALTLKDCPYWAAFPLLLTGFLGLYFCSAEQKVFKKDLVSMIVRNTSAAFSIVCSLLCSLASGFSGHHGNWLAYYCKVCPANLHETSEKHSIHNHPTTSCCQTLQIPKL------ICECGYYREITNHSISISYNKWNPLISYHNVNCYYVFSSLKDYLILQCALYAVAAGVSIWLSVLIWSQRVHD 313          
The following BLAST results are available for this feature:
BLAST of SMED30016784 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016784 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016784 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016784 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016784 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016784 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016784 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016784 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4Z2DD025.713e-2031.41Uncharacterized protein OS=Schistosoma japonicum O... [more]
A0A4E0RIR94.619e-1933.80Uncharacterized protein OS=Fasciola hepatica OX=61... [more]
A0A504YEC95.895e-1833.33Uncharacterized protein OS=Fasciola gigantica OX=4... [more]
A0A4S2MH701.378e-1735.98Uncharacterized protein OS=Opisthorchis felineus O... [more]
A0A419Q0G81.378e-1735.51Uncharacterized protein OS=Clonorchis sinensis OX=... [more]
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BLAST of SMED30016784 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016784 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016784 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016784 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016784 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016784 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000033408.10.000e+0100.00SMESG000033408.1[more]
SMESG000033408.10.000e+0100.00SMESG000033408.1[more]
SMESG000063964.14.296e-3835.68SMESG000063964.1[more]
SMESG000061752.12.399e-2929.74SMESG000061752.1[more]
SMESG000071184.14.584e-2934.67SMESG000071184.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30016784 ID=SMED30016784|Name=SMED30016784|organism=Schmidtea mediterranea sexual|type=transcript|length=1369bp
TTTAATTTGAAAAAAAATGATGTACAATCAATCATCAGACAAAGTTGAAT
GGGGCCACATGAAAATGCCGGAGATAATTATTGACTCCGACAATGAGAGT
ACCACAAAGAATTATGACAATGAATCATACAATAATTGCTTCCTTAAAGC
AAATCGAGAAGAGTCCAATCATTTGACTTGCAAATCAAATTTGGACGACG
CAGACTCGGGAATTCATGAGTCGAACGATATTTTTCTCCCAGGAATATCA
TCAGTATTGCATCCCAATAGATTGAGTCTTCGGGACATGAAAAAACGTTC
GAATTTATCGGAGGTCAGGTCATATTCAACAAATTGTTTATCAGTCGACA
CCAACCGATACAAAGAAGGATTGGGGATGATTGACCCTCGGTTATGTAGA
AATTGCTCGACAAAATCTCATTCGAAAAAACAATTCGATTCTATAAAGCG
AGAACCAAATGAAATTCCTTACCGAATAAATGAAATTGTCAAAATATCAG
AAACCAAACCAAAAATCAACAGCCGAGACAGTCTTCAACATAGATTGTGC
AAAATACGAGTTTTACTAGTTTGCATGAAGATTCTCCTCGGTTCAACCAT
GACAGGTCTTGGAATTTTTCTTCTTATGGCATCTAAATCAATAAAAGTAA
AAGATTGTGCTTTTTGGGCAGGAGGACCGTTACTCTTTTCGGGATTGTTT
GAAGTATTCATTTATAATTGGAGGAATAAATTGAGGAAACGAATGAAAAT
TTGCTATTTGATGACGATAGCTTGTGGAGTTATCTCATTCATTTGTTCAA
TTCTGTGCCTATTATCAAGTATATTCTCCGGTGTTCACGGAAACTGGATT
TCTGGACACAGTGATAATTGTCTTTCGAAAGACGATAATAATCAGAATGA
TATGTTACTCGCTTGCTGTTACGATATCCACACTAAAGGAATAAATTCCA
GCATAAATTCGACATGCTTTTGTCGAGAAGCACGAGAAAATATATATTCA
AAGCCAATTATAACTATGACATATGAAAACCTCAATTGTAGATATGTATT
TTCAGCCCTGAAAGATTATTTAATACTTCAATGTGCTCTCATGGGCGTCG
GCTCGGGGGTTTGTTTGTGGCTTTTACAAATGACAATTCAGAGGCTAATT
CAAGATTGTTCCACAACTAGTCAAACGCGATCCGGTCAACCAAACACAGA
TGATCAAAACTCTGTCGGACAGAGTCCAGTTATTCCATTGAAAATTCGAT
GCATTCAGGTGAACGAAAAGTCTCAAATTTTAAATGATTATATACGAGAA
AAGTCCAATAATTTTAATTATATCAATAATAACAGATTTCACAGTGAACT
TTACAAACCGAATCCAGAA
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protein sequence of SMED30016784-orf-1

>SMED30016784-orf-1 ID=SMED30016784-orf-1|Name=SMED30016784-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=451bp
MMYNQSSDKVEWGHMKMPEIIIDSDNESTTKNYDNESYNNCFLKANREES
NHLTCKSNLDDADSGIHESNDIFLPGISSVLHPNRLSLRDMKKRSNLSEV
RSYSTNCLSVDTNRYKEGLGMIDPRLCRNCSTKSHSKKQFDSIKREPNEI
PYRINEIVKISETKPKINSRDSLQHRLCKIRVLLVCMKILLGSTMTGLGI
FLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMT
IACGVISFICSILCLLSSIFSGVHGNWISGHSDNCLSKDDNNQNDMLLAC
CYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKD
YLILQCALMGVGSGVCLWLLQMTIQRLIQDCSTTSQTRSGQPNTDDQNSV
GQSPVIPLKIRCIQVNEKSQILNDYIREKSNNFNYINNNRFHSELYKPNP
E
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
Vocabulary: INTERPRO
TermDefinition
IPR030429Sarcospan
IPR007237CD20-like
Vocabulary: cellular component
TermDefinition
GO:0016010dystrophin-associated glycoprotein complex
GO:0005887integral component of plasma membrane
GO:0016021integral component of membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007237CD20-like familyPFAMPF04103CD20coord: 184..298
e-value: 1.6E-7
score: 31.5
IPR030429SarcospanPANTHERPTHR15260FAMILY NOT NAMEDcoord: 157..384
NoneNo IPR availableTMHMMTMhelixcoord: 248..270
NoneNo IPR availableTMHMMTMhelixcoord: 214..235
NoneNo IPR availableTMHMMTMhelixcoord: 182..204
NoneNo IPR availableTMHMMTMhelixcoord: 351..370