SMED30016784
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30016784 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Homology
BLAST of SMED30016784 vs. TrEMBL
Match: A0A4Z2DD02 (Uncharacterized protein OS=Schistosoma japonicum OX=6182 GN=EWB00_002261 PE=4 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 5.713e-20 Identity = 87/277 (31.41%), Postives = 140/277 (50.54%), Query Frame = 2 Query: 458 NEIPYRINEIVKISE-TKPKINSRDSLQHRLCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRK-RMKICYLMTIACGVXXXXXXXXXXXXXXXXGVHGNWISGHSDNC-------------------LSKDDNNQNDMLL-ACCYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWLLQMTIQRLIQDCSTT-------SQTRSGQPNTD 1201 N + +N++ I T N DS LC + VLLVCM++ +G T TGLG+FL ++ K+CA+ +G PL+ SG FI +R++ ++ ++ + G++SF C I+CL++S+++G G+ I+ + + C ++ + +N N + CCY+I + +TC C S Y NL+CR +FS++KDY+ILQ ALMGVGSGV LW + I+ ++ + S TRS P T Sbjct: 549 NSVDLELNKLDTIQNITDLHTNKGDSFTRCLCSLIVLLVCMQLAVGITSTGLGLFLTWKVPELEPKECAYLSGIPLIISGFIGTFIC-FRHRFPSISPELMNIIQLTSGILSFGCFIICLITSVYAGQKGSEIASYENTCRIVTIKQNEQQSTNKVLYPVTMNYSNTNHYFIEPCCYEI--------VKNTCECFTITGQRIS------CYHNLSCRLLFSSIKDYIILQSALMGVGSGVSLWSWLLVIENKLKYLLNSKYVRMSFSSTRSSVPETS 810
BLAST of SMED30016784 vs. TrEMBL
Match: A0A4E0RIR9 (Uncharacterized protein OS=Fasciola hepatica OX=6192 GN=D915_000341 PE=4 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.619e-19 Identity = 73/216 (33.80%), Postives = 107/216 (49.54%), Query Frame = 2 Query: 545 LCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMTIACGVXXXXXXXXXXXXXXXXGVHGNWISGHSDNCLSKD-------------------DNNQNDMLLA----CCYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWL 1123 C++ VLLV M+I LG TGLG++L + +++C+FWA P+ +GLF + R RK +I + G +S I ILCL++SIFSG G+ I+ + +C+ + + D L CC D G++ C C R + +Y + CRY+FS++KDYLILQ ALM VG+GVCLW Sbjct: 537 FCQLIVLLVSMQISLGLAATGLGLYLRWRVPLLPLEECSFWAALPITITGLFGTYFCFQRRISRKNPQITLAIRRIAGALSLISCILCLVASIFSGQKGSLIATYGTDCIPSNPLYSIHNSSIKNNDNSNNNQEKKTDYDLGFEQQCCID----GVDRMSEPLCQCFNVRNQLM------WSYRGIACRYLFSSVKDYLILQSALMAVGTGVCLWF 742
BLAST of SMED30016784 vs. TrEMBL
Match: A0A504YEC9 (Uncharacterized protein OS=Fasciola gigantica OX=46835 GN=FGIG_08303 PE=4 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 5.895e-18 Identity = 75/225 (33.33%), Postives = 109/225 (48.44%), Query Frame = 2 Query: 518 NSRDSLQHRLCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMTIACGVXXXXXXXXXXXXXXXXGVHGNWISGHSDNCLSKDD-------------------NNQNDMLLA----CCYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWL 1123 N R S C++ VLLV M+I LG TGLG++L + +++C+FWA P+ +G + R RK +I + GV+S I ILCL++SIFSG G+ I+ + +C+ + + D L CC D G++ C C R + +Y + CRY+FS++KDYLILQ ALM VG+GVCLW Sbjct: 529 NRRSSRGLCFCQLIVLLVSMQISLGLAATGLGLYLRWRVPLLPLEECSFWAALPISITGFIGTYFCFQRRISRKNPQITLAIRRIAGVLSLISCILCLVASIFSGQKGSLIATYGTDCIPSNPLYSVHNSSIKNNNNSNNSLERKPDYDLGFEQQCCID----GVDRMSEPLCQCFNVRNQLM------WSYRGIACRYLFSSVKDYLILQSALMAVGTGVCLWF 743
BLAST of SMED30016784 vs. TrEMBL
Match: A0A4S2MH70 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_000928 PE=4 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.378e-17 Identity = 77/214 (35.98%), Postives = 114/214 (53.27%), Query Frame = 2 Query: 545 LCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLF-EVFIYNWRNKLRKRMKICYLMTIACGVXXXXXXXXXXXXXXXXGVHGNWISGHSDNCLS------KDDNNQNDMLL----ACCYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWL-LQMTIQRLI 1150 C++ VLLV M+I+LG + T LG +L + +++CAFWA PL F+G+ +F + R + R M A G++S I +LCL++SIFSG GN I+ C S + Q+ L CC D T G++ ++ C C R + +Y + CRY+ S++KDYLILQ ALM V +GVCLW + +T QR + Sbjct: 470 FCQLHVLLVIMQIVLGVSTTALGFYLHWKIPLLPLEECAFWAAIPLSFTGMIGSLFCFENRCQ-RFNRSYSVSMRRATGILSLISCVLCLVASIFSGQKGNVIATSGHPCQSIRLTTQTKNATQSSGLPEYEHQCCSD--TSGLDG--HNVCQCLNMRNQV------IWSYHKITCRYLISSVKDYLILQSALMAVAAGVCLWFWVVLTEQRYV 672
BLAST of SMED30016784 vs. TrEMBL
Match: A0A419Q0G8 (Uncharacterized protein OS=Clonorchis sinensis OX=79923 GN=CSKR_3134s PE=4 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.378e-17 Identity = 76/214 (35.51%), Postives = 114/214 (53.27%), Query Frame = 2 Query: 545 LCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLF-EVFIYNWRNKLRKRMKICYLMTIACGVXXXXXXXXXXXXXXXXGVHGNWI--SGHSDNCLSKDDNNQN--------DMLLACCYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWL-LQMTIQRLI 1150 C++ VLLV M+I+LG + T LG +L + +++CAFWA PL F+G+ +F + R +L R M A G+++ I +LCL++SIFSG GN I SGH + +N + CC D T ++ ++ C C R + +Y + CRY+ S++KDYLILQ ALM V +GVCLW + +T QR + Sbjct: 470 FCQLHVLLVIMQIVLGMSTTALGFYLHWKIPLLPLEECAFWAAIPLSFTGIIGSLFCFENRCQLFNR-SYSVSMRRATGILTLISCVLCLVASIFSGQKGNVIASSGHPCQIVRPTTQTKNATQSSGLPEYEHQCCSD--TSSLDG--HNVCQCLNMRNQV------IWSYHKITCRYLISSVKDYLILQSALMAVAAGVCLWFWVVLTEQRYV 672
BLAST of SMED30016784 vs. Planmine SMEST
Match: SMESG000033408.1 (SMESG000033408.1) HSP 1 Score: 873.233 bits (2255), Expect = 0.000e+0 Identity = 451/451 (100.00%), Postives = 451/451 (100.00%), Query Frame = 2 Query: 17 MMYNQSSDKVEWGHMKMPEIIIDSDNESTTKNYDNESYNNCFLKANREESNHLTCKSNLDDADSGIHESNDIFLPGISSVLHPNRLSLRDMKKRSNLSEVRSYSTNCLSVDTNRYKEGLGMIDPRLCRNCSTKSHSKKQFDSIKREPNEIPYRINEIVKISETKPKINSRDSLQHRLCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMTIACGVXXXXXXXXXXXXXXXXGVHGNWISGHSDNCLSKDDNNQNDMLLACCYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWLLQMTIQRLIQDCSTTSQTRSGQPNTDDQNSVGQSPVIPLKIRCIQVNEKSQILNDYIREKSXXXXXXXXXRFHSELYKPNPE 1369 MMYNQSSDKVEWGHMKMPEIIIDSDNESTTKNYDNESYNNCFLKANREESNHLTCKSNLDDADSGIHESNDIFLPGISSVLHPNRLSLRDMKKRSNLSEVRSYSTNCLSVDTNRYKEGLGMIDPRLCRNCSTKSHSKKQFDSIKREPNEIPYRINEIVKISETKPKINSRDSLQHRLCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMTIACGVISFICSILCLLSSIFSGVHGNWISGHSDNCLSKDDNNQNDMLLACCYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWLLQMTIQRLIQDCSTTSQTRSGQPNTDDQNSVGQSPVIPLKIRCIQVNEKSQILNDYIREKSNNFNYINNNRFHSELYKPNPE Sbjct: 1 MMYNQSSDKVEWGHMKMPEIIIDSDNESTTKNYDNESYNNCFLKANREESNHLTCKSNLDDADSGIHESNDIFLPGISSVLHPNRLSLRDMKKRSNLSEVRSYSTNCLSVDTNRYKEGLGMIDPRLCRNCSTKSHSKKQFDSIKREPNEIPYRINEIVKISETKPKINSRDSLQHRLCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMTIACGVISFICSILCLLSSIFSGVHGNWISGHSDNCLSKDDNNQNDMLLACCYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWLLQMTIQRLIQDCSTTSQTRSGQPNTDDQNSVGQSPVIPLKIRCIQVNEKSQILNDYIREKSNNFNYINNNRFHSELYKPNPE 451
BLAST of SMED30016784 vs. Planmine SMEST
Match: SMESG000033408.1 (SMESG000033408.1) HSP 1 Score: 869.766 bits (2246), Expect = 0.000e+0 Identity = 450/450 (100.00%), Postives = 450/450 (100.00%), Query Frame = 2 Query: 20 MYNQSSDKVEWGHMKMPEIIIDSDNESTTKNYDNESYNNCFLKANREESNHLTCKSNLDDADSGIHESNDIFLPGISSVLHPNRLSLRDMKKRSNLSEVRSYSTNCLSVDTNRYKEGLGMIDPRLCRNCSTKSHSKKQFDSIKREPNEIPYRINEIVKISETKPKINSRDSLQHRLCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMTIACGVXXXXXXXXXXXXXXXXGVHGNWISGHSDNCLSKDDNNQNDMLLACCYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWLLQMTIQRLIQDCSTTSQTRSGQPNTDDQNSVGQSPVIPLKIRCIQVNEKSQILNDYIREKSXXXXXXXXXRFHSELYKPNPE 1369 MYNQSSDKVEWGHMKMPEIIIDSDNESTTKNYDNESYNNCFLKANREESNHLTCKSNLDDADSGIHESNDIFLPGISSVLHPNRLSLRDMKKRSNLSEVRSYSTNCLSVDTNRYKEGLGMIDPRLCRNCSTKSHSKKQFDSIKREPNEIPYRINEIVKISETKPKINSRDSLQHRLCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMTIACGVISFICSILCLLSSIFSGVHGNWISGHSDNCLSKDDNNQNDMLLACCYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWLLQMTIQRLIQDCSTTSQTRSGQPNTDDQNSVGQSPVIPLKIRCIQVNEKSQILNDYIREKSNNFNYINNNRFHSELYKPNPE Sbjct: 1 MYNQSSDKVEWGHMKMPEIIIDSDNESTTKNYDNESYNNCFLKANREESNHLTCKSNLDDADSGIHESNDIFLPGISSVLHPNRLSLRDMKKRSNLSEVRSYSTNCLSVDTNRYKEGLGMIDPRLCRNCSTKSHSKKQFDSIKREPNEIPYRINEIVKISETKPKINSRDSLQHRLCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMTIACGVISFICSILCLLSSIFSGVHGNWISGHSDNCLSKDDNNQNDMLLACCYDIHTKGINSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWLLQMTIQRLIQDCSTTSQTRSGQPNTDDQNSVGQSPVIPLKIRCIQVNEKSQILNDYIREKSNNFNYINNNRFHSELYKPNPE 450
BLAST of SMED30016784 vs. Planmine SMEST
Match: SMESG000063964.1 (SMESG000063964.1) HSP 1 Score: 142.895 bits (359), Expect = 4.296e-38 Identity = 86/241 (35.68%), Postives = 130/241 (53.94%), Query Frame = 2 Query: 524 RDSLQHRLCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMTIACGVXXXXXXXXXXXXXXXXGVHGNWISGHSDNC---LSKDDNNQNDMLLACCYDIHTKGINS----SINST-CFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWLLQMTIQRLIQDCSTTSQTRSGQPNTDDQNSVGQ 1222 ++ + + C+I VLL+ M++ LG +M+GLG++L S S+ KDC +WAG PLL SG F ++ +++ KR + L+ I C +S + + L L +SI SG HG WIS S C ++ + + CC D HT + +N T C C+ A +S Y + CRYVFSALKDY ILQ +LMGV +GVC+W++ + Q + QPN DQ ++ + Sbjct: 94 KEKFEIQFCRINVLLISMQLGLGFSMSGLGVYLRSVSPSLTWKDCTYWAGLPLLCSGAFGLYFCLSDHEIYKRSHLSRLVKIVCACMSVVTAALTLSASIMSGTHGKWISDFSSTCDLHFIREHSETDSYPDKCCEDKHTHPMPRHKLLPMNDTMCVCKTAPFGNFSLLKFEREYAAVTCRYVFSALKDYFILQSSLMGVATGVCIWIVIL-------------QIKDEQPNMIDQENISR 321
BLAST of SMED30016784 vs. Planmine SMEST
Match: SMESG000061752.1 (SMESG000061752.1) HSP 1 Score: 119.783 bits (299), Expect = 2.399e-29 Identity = 124/417 (29.74%), Postives = 198/417 (47.48%), Query Frame = 2 Query: 59 MKMPEIIIDSDNESTTKNYDNESYNNCFLKANR----EESNHLTCKSNLDDADSGIHESNDIFLPG--------ISSVL--HPN-----------RLSLRDMKKRSNLSEVRSYSTNCLSVDTNRYKEGLGMIDPRLCRNCSTKSHSKKQF------DSIKREPNEIPYRINEIVK--ISETKPKINSRDSLQHRLCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMTIACGVXXXXXXXXXXXXXXXXGVHGNWISGHSDNCLSKDDNNQNDML-----LACCY---------DIHTKGI------NSSINSTCFCREARENIYSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWLLQMTIQRLI 1150 M P I+IDS++ S + + Y +K + + S + KSN DD DSGIH S+++F P I + L HP SL + K+ S ++ S+DT R P + H + + DS+K I R + + K + T+P + + LC+I++LL+ MKI+LGS++T G+ L SKS+++KDC +WA L+ SGL ++ + N K+ ++ T + S SI+CL++SI+SGVHGNWIS H++ C K D + L CC+ +I GI N + +++C C ++ KP Y L+C+Y+FS+LKD+ +L C+LMGVG G +W + I+ + Sbjct: 1 MDFPVIVIDSNSNSIKDSEEGIDYLRPSVKDDYNFLVKNSLQIQSKSN-DDGDSGIHGSSEVFGPSPVPSHKMLIENDLMDHPTGTLKKTQLSLSASSLLERKRSFTRSFIKQTKNRNYSMDTGRPSSMPKRFSPY--KLMIVDEHGQPFYVQKINRDSVK----TIISRPDSLTKDNLVLTRPHDRNTEKFVSNLCQIQLLLIIMKIVLGSSITIFGLNLHGFSKSLQMKDCGYWASSILMVSGLISIY-FASENLYVLSQKMHHIYTFLVILFSGTSSIICLMASIYSGVHGNWISFHANECHLKAIMKSRDYMPMTNELNCCFNFPGKDKQKEIFNYGIIRNLIDNQTDSNSCGCFDSAL----KP--ERIYVGLSCKYLFSSLKDHFVLICSLMGVGCGCEIWFVLYLIKYVF 403
BLAST of SMED30016784 vs. Planmine SMEST
Match: SMESG000071184.1 (SMESG000071184.1) HSP 1 Score: 117.472 bits (293), Expect = 4.584e-29 Identity = 78/225 (34.67%), Postives = 122/225 (54.22%), Query Frame = 2 Query: 521 SRDSLQHRLCKIRVLLVCMKILLGSTMTGLGIFLLMASKSIKVKDCAFWAGGPLLFSGLFEVFIYNWRNKLRKRMKICYLMTIACGVXXXXXXXXXXXXXXXXGVHGNWISGHSDNC------LSKDDNNQNDMLLACCYDIHTKGINSSINSTCFCREARENI-------YSKPIITMTYENLNCRYVFSALKDYLILQCALMGVGSGVCLWLLQMTIQRLIQD 1156 S++ L+ +C+I VLLV M++ LGS+M LG++L S ++ +KDC +WA PLL +G ++ + K+ K+ + ++ S +CS+LC L+S FSG HGNW++ + C S+ + N +CC + + C C RE Y+K ++Y N+NC YVFS+LKDYLILQCAL V +GV +WL + + + D Sbjct: 95 SKEKLELHICRINVLLVMMQLGLGSSMAALGLYLHNLSPALTLKDCPYWAAFPLLLTGFLGLYFCSAEQKVFKKDLVSMIVRNTSAAFSIVCSLLCSLASGFSGHHGNWLAYYCKVCPANLHETSEKHSIHNHPTTSCCQTLQIPKL------ICECGYYREITNHSISISYNKWNPLISYHNVNCYYVFSSLKDYLILQCALYAVAAGVSIWLSVLIWSQRVHD 313 The following BLAST results are available for this feature:
BLAST of SMED30016784 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30016784 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30016784 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30016784 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30016784 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30016784 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30016784 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30016784 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30016784 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30016784 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30016784 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30016784 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30016784 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30016784 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30016784 ID=SMED30016784|Name=SMED30016784|organism=Schmidtea mediterranea sexual|type=transcript|length=1369bpback to top protein sequence of SMED30016784-orf-1 >SMED30016784-orf-1 ID=SMED30016784-orf-1|Name=SMED30016784-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=451bp MMYNQSSDKVEWGHMKMPEIIIDSDNESTTKNYDNESYNNCFLKANREESback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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