SMED30016710

Overview
NameSMED30016710
Smed IDSMED30016710
Length (bp)4160
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30016710 (SMED30016710) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30016710 (SMED30016710) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30016710 (SMED30016710) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30016710 (SMED30016710) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30016710

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 19

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30016710h1SMcG0014752 Contig4121uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30016710h1SMcG0014752 Contig4121newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30016710h1SMcG0020441 Contig4121uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30016710h1SMcG0020441 Contig4121newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
head regionSMED30016710h1SMcG0014752 SmedASXL_010206SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
head regionSMED30016710h1SMcG0014752 SmedASXL_041066SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30016710h1SMcG0014752 dd_Smed_v4_10583_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30016710h1SMcG0014752 dd_Smed_v4_10583_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30016710h1SMcG0014752 dd_Smed_v4_10583_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30016710h1SMcG0014752 dd_Smed_v4_10583_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30016710h1SMcG0014752 dd_Smed_v4_10583_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30016710h1SMcG0014752 dd_Smed_v4_10583_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30016710h1SMcG0014752 dd_Smed_v4_10583_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30016710h1SMcG0014752 Contig4121uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30016710h1SMcG0014752 Contig4121newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30016710h1SMcG0020441 Contig4121uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30016710h1SMcG0020441 Contig4121newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
head regionSMED30016710h1SMcG0014752 dd_Smed_v6_10583_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
head regionSMED30016710h1SMcG0014752 OX_Smed_1.0.16365ox_Smed_v2PMID:24238224
Kao et al., 2013		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30016710 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000258:77177..87408 -16067
Homology
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BLAST of SMED30016710 vs. Planmine SMEST
Match: SMESG000020037.1 (SMESG000020037.1)

HSP 1 Score: 142.51 bits (358), Expect = 4.506e-39
Identity = 73/128 (57.03%), Postives = 92/128 (71.88%), Query Frame = 3 
Query: 3690 MNLIRSMSKELRKYRRENSELSAQLFQVSREIQKVKYTWVKPDRTNKIYQQLTATQRGWAEEKQPVQAQRTQIRGLEVVLSACQEDNAITYPLVFAPAQLAHRETHRPDVSLEAKRSRP-RPGKLERA 4070
            M   +  S+EL K RREN+EL  QL Q+++EI ++K TWV+P +   +YQ++TA QRGWAEEKQ  Q Q+ QIR LEV LSACQE NA+TYPLVFAPAQLA+RE    + +  A +  P RPGK ERA
Sbjct:    1 MGPYKISSRELEKSRRENAELHQQLIQMTKEIHQIKATWVEPGKVKSLYQKMTAAQRGWAEEKQLHQTQKVQIRSLEVALSACQEGNAVTYPLVFAPAQLAYREA--TETTKPATKPTPRRPGKAERA 126
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BLAST of SMED30016710 vs. Planmine SMEST
Match: SMESG000006302.1 (SMESG000006302.1)

HSP 1 Score: 123.635 bits (309), Expect = 1.102e-38
Identity = 66/128 (51.56%), Postives = 88/128 (68.75%), Query Frame = 3 
Query: 3690 MNLIRSMSKELRKYRRENSELSAQLFQVSREIQKVKYTWVKPDRTNKIYQQLTATQRGWAEEKQPVQAQRTQIRGLEVVLSACQEDNAITYPLVFAPAQLAHRE-THRPDVSLEAKRSRPRPGKLERA 4070
            M   R++ +EL   RR N  L AQL Q+S E Q+++ TW++P +   +YQ+LTA Q+GW+EEKQ  Q+ RTQI+ LEV +SACQE  A+TYPLVFAPAQL +RE T  P ++   K S   PG+ ERA
Sbjct:  111 MESARTLQRELDYVRRTNEILRAQLLQLSNETQRIRATWIEPVKMKALYQRLTAAQKGWSEEKQLNQSLRTQIKVLEVAVSACQEGAAVTYPLVFAPAQLVYREATAGPKIT--PKSSGYWPGRKERA 236

HSP 2 Score: 58.151 bits (139), Expect = 1.102e-38
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1 
Query: 3358 DDSRITIQISXXXXXXXXQVLWDSGYTISTDRNSDWPIDPRRRNDEIELPAGIIKREPSRNPA*EARQKAELKLASLEAKCKEVQQETATH*STLVKLNGNV 3663
            D+SR+TI+  A AA R RQ +WD+G+T+S  R+S   I   R+ +++ELP   IKREP  N A E R  AE  LA LE   ++   + A     L  +N ++
Sbjct:    8 DESRVTIRFPAHAADRWRQAMWDAGFTVSQVRDSKSGI--LRQMEDVELPFVAIKREPGPNTAREIRGHAEFLLAHLEEHQRQTGLQVARARLYLANVNEDI 107
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BLAST of SMED30016710 vs. Planmine SMEST
Match: SMESG000047732.1 (SMESG000047732.1)

HSP 1 Score: 141.739 bits (356), Expect = 1.103e-38
Identity = 67/106 (63.21%), Postives = 85/106 (80.19%), Query Frame = 3 
Query: 3684 IKMNLIRSMSKELRKYRRENSELSAQLFQVSREIQKVKYTWVKPDRTNKIYQQLTATQRGWAEEKQPVQAQRTQIRGLEVVLSACQEDNAITYPLVFAPAQLAHRE 4001
            I ++  +++SKEL K RREN+EL  QL Q++REIQK+K +W++P +   + Q+ TATQRGWAEEKQ  QAQ+TQIR LEV LSACQE NA+TYPLVF PAQLA+RE
Sbjct:    6 IDLDPFKTLSKELVKSRRENAELHRQLLQMTREIQKIKASWMEPTKVKTLSQRFTATQRGWAEEKQLGQAQKTQIRNLEVALSACQEGNAVTYPLVFEPAQLAYRE 111
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BLAST of SMED30016710 vs. Planmine SMEST
Match: SMESG000013207.1 (SMESG000013207.1)

HSP 1 Score: 140.198 bits (352), Expect = 3.264e-38
Identity = 71/126 (56.35%), Postives = 91/126 (72.22%), Query Frame = 3 
Query: 3690 MNLIRSMSKELRKYRRENSELSAQLFQVSREIQKVKYTWVKPDRTNKIYQQLTATQRGWAEEKQPVQAQRTQIRGLEVVLSACQEDNAITYPLVFAPAQLAHRETHRPDVSLEAKRSRPRPGKLER 4067
            M  +R++S++L K R+EN+EL +QLFQ+SREIQK++ T  +P R    YQ+LTA QRGW EEKQ  Q Q+TQIR LEV LSA QE NA TYPLVFAP Q+A+R+       + + RS+ RPGK ER
Sbjct:    1 MESLRTLSRKLVKSRKENTELHSQLFQMSREIQKIRSTSGEPTRMKTTYQRLTAAQRGWTEEKQLAQNQKTQIRSLEVALSASQESNAGTYPLVFAPVQIAYRDAISTTKLVASLRSQRRPGKAER 126
[Close]
BLAST of SMED30016710 vs. Planmine SMEST
Match: SMESG000036641.1 (SMESG000036641.1)

HSP 1 Score: 144.05 bits (362), Expect = 1.125e-37
Identity = 74/127 (58.27%), Postives = 92/127 (72.44%), Query Frame = 3 
Query: 3690 MNLIRSMSKELRKYRRENSELSAQLFQVSREIQKVKYTWVKPDRTNKIYQQLTATQRGWAEEKQPVQAQRTQIRGLEVVLSACQEDNAITYPLVFAPAQLAHRETHRPDVSLEAKRSRPRPGKLERA 4070
            M  +R++SK+L   R+EN+EL  QL Q+SREIQK++ TW++P R   I Q+LTA QRGWAEEKQ VQ QRTQ R LEV L ACQE NA+TY LV APAQ+A+R+       + AKR + RPGK ERA
Sbjct:  157 MQSLRTLSKKLMNSRKENTELHNQLIQMSREIQKIRATWIEPARAKAINQRLTAAQRGWAEEKQLVQNQRTQNRSLEVALLACQEGNAVTYQLVIAPAQIAYRDASSTTKPVTAKRPQQRPGKTERA 283

HSP 2 Score: 58.5362 bits (140), Expect = 1.080e-8
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 1 
Query: 3418 LWDSGYTISTDRNSDWPIDPRR-RNDEIELPAGIIKREPSRNPA*EARQKAELKLASLEAKCKEVQQETATH*STLVKLNGNV 3663
            +WD+GY+IS  R S    + R   NDE+ELP   IK+EP RNPA EARQ+AE  L  LE   K+   + A     L K+N ++
Sbjct:    1 MWDAGYSISPVRESR---ESRHFNNDEVELPYVAIKQEPGRNPAREARQRAESTLDCLEIHQKQTNWQVAMARQWLDKVNADI 80
The following BLAST results are available for this feature:
BLAST of SMED30016710 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016710 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016710 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016710 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016710 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016710 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016710 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016710 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016710 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016710 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016710 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016710 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016710 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016710 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000020037.14.506e-3957.03SMESG000020037.1[more]
SMESG000006302.11.102e-3851.56SMESG000006302.1[more]
SMESG000047732.11.103e-3863.21SMESG000047732.1[more]
SMESG000013207.13.264e-3856.35SMESG000013207.1[more]
SMESG000036641.11.125e-3758.27SMESG000036641.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30016710 ID=SMED30016710|Name=SMED30016710|organism=Schmidtea mediterranea sexual|type=transcript|length=4160bp
TTTAGGTCTTTCGGTTTCGTCAGTGCTTTCATCACTACTTGACAAAGTCG
CTTTACTCATTTCTTCATATGGTCTTCATTTCTGTGCCAGTTGAATTCGT
TTTTCTAAGATTGAATTTCAAAATAAAAATTGATTTCAAATTGAAACGCA
TTTTAAATAAAATAAATAAACTCTTCTGGTAACAGTCGCAGCCCAATTTA
TTGAATGAGCTGAACATACACAACCGATTGATAGGAGTCTGAAGAGTTCA
CCATTATAAATACATGCACATTTGCTGCATAGAGTTTTCGCTCAGCTGGT
GTTGTGTTGCCATCTGCGTCATCATATTCATCTGCAAGCTATTGGCTGCA
CACAGACTTAGCGGAAGCGAATAAATTTATGTATGTCAATTGGTTTGTCG
GTCTGTCTGTAACAATCCAAAATACCCACCAATATTCGATGAACAAAATA
TTAGAAATTAAAGTTAACTCCAAACAATTATATGTTGCTCCAAATTTTTG
TTGAATTCTAGAAAAACAGTTTATAGATCAGGAAAAATGGCGCCGGAATT
TTATAAATATGTACTTAGTTATTCCGGAACGTTCTTATTTTGGTAGCTGT
ACCTATGTGGCAATTCCTTGCTTTCCATGGGTTCTTTATGATTCACAGCA
ATGAGCTGAATGTTGAGTAATATTGGAGATCTGGCAGTACGCTACGTACG
TTTACATGGAATGCCGATTTTTATCAATTCTTGTCAAATCCGCCGAAAGG
TATCCTTGGCATTTCATAAATTTTTTGGTGGAAATCTGTGATATTAAACT
AGGCAGTGTCGGCTATGGGATTTACGAGGCGGTTTTGTTATAAGCTTTAA
ATTGAGTCTCAAACTGGCAGTCTGCAAACCGAATCTAGTCACTGATTTCT
ATTTTAGATTTAAGACAATAACTTTTCAAATTAATCAAAGAATTTTTTAC
TGATTTAGAGATTTGATAAAATATTTAGACATTTGGGAAAAAATTAATTA
AATTGTCTTATTACTAGTCTTATTATTTTCTTACTGAAGTTACTTTTAGA
GTCCTAACGCAAACGACACAACAAAATAAAAATAACCCTTAACTGGTAAT
AACTAGTATTACTAAAATGTTACATAAACATTAAATAAAACGTTAATAAT
TCAATTGTGTGATAGGTGCCCGGAGGGAAGCAAGAGTGGGCACTGCCCCC
CCACCACTTCTATAAAAAACTGGTTAAAATATATCCGTTGTATTGATAGA
TTTTGTTTCTCTCTTACGCTTTGTGAACCGTTTTGGTGGCCGGATTTATA
TTCATATTTGGTGGTCTTCCAAATTCCATTTAAAAATGCATGCCCGGGCT
AATAATTCAAAAAGTTTAAAAATAACGAAATGTAAACTAATTTAATATGA
GCAAACATTATGCTTACAATCGAATTTTATTTTAAATATCAATCGTTTTT
GCTTTTCAATTATTTTCCTCGTCTGTTATCGTTTTACTTTTAAACAAAAT
TTTTTAACATACTCAATTTGCAAAATAATAAAACTCATGGGGAAAATAAA
CAATATTTAAAATTTACAAACAATGAGTTTGTTTTTTTTATAATTGAGAG
GCTCAAAAATGGTCACTACATCATCCACCATCGGAAGACGGGGAGCGCAT
ATGGTATACAATACGATAAATAAAATATTAATCTTAATTATTTCCGAAGG
TAAGGAGATAATTGATTGACAGTGATCGATGAAGGTGACTCAAACAACTT
TGGTAATTTACTCGAACCTGAAATTTTAATATGCTCCAAGAAGTCTGGTT
GGTTTGTGAATCGCACGTGAACCCAATTTGCAAATGTGATGTTCTTTTTT
TACAGATAATTTGTTTTGTTTTATTAAGAATAGGTTGTAGAGCGATCTTT
TTAGGTGTTTAACGGTTGTGTCAGGAATTGGTTCAACCCTACCTATCTTT
AAAAGGTACTGATGTTTGTTCTATGTCTGAATTTGGGTTTTCGGAAAATG
TATTCTTTGGAGTACCATAATCGTCATCAAAAGAGTTGTCTTCGAGCAAA
ATAAACGCGGGTTTCAAGCGGCAGATGTTAAAGGTCTGTGTTGAATCATT
TACGATTACTATACCGTGTTTGTATAACCGATTTTATGAGACTTTCGTCT
GCAGAAGTATAAATTCCTACTTCAGAATTTCAGATTCGTGGAAACCGTAA
TAGTCCGGATAAATAGAGGTAGATTCAATTTCTATTTTCACGATAAAAAT
CTGAAATCGATATGAAACAGTCAATCACAAAAATCGATTTTTAAGTAAAC
TTACGTAGTAATAAAGTAGAGTAGGCAATTGGCATCATCCGTAGAATTTC
TAAAAGCCAACTTAAATTTTCTGTATTTGCGAGGAGATATGACCGGTCCG
CATAATAAAATCAAATCAATTGTTACTCAAGTAGGAATGGTGACAGTGCA
GAATAAATACAAAAACACTGAAGAAAAAACAAAATAAAGTCAGAACGATC
ATGATGATGAATTTTTCGTAGCGTGAGTCAGAGATTGCTCGATGCTATAT
ATATAGTAAGTAATCGGAGAGTCATTAGTTATGAATCAAGCGAACTCGAC
CAAAAGTCAAAAAGATATGAAATCACGAATTCAGTGACGGTAAGAAGCCG
GAGTCGAGCCACACGCCCAGTGGATCGCCATGATTCCAGACAGATGCATG
GAATCGGAGAAACGCCTTTCTTGGGAAGAGTCGAGCTAAGATAGAGAACA
TCAGAAATGAAGGCGAGAAGTGAAAACTGCTATGATAGGCGCCTACAATT
ATGAAATACACTACTCTCATCCATTACATTTTTATGAAATAATTATGCCT
GCTGATAATAAATAATAAATTTTCATTTTTAGGTATTACTTCACTTTATG
AATTACATAACCCGAAATTCAGTTGATAAGTTAAAACAGCCTTTTAATTT
CTAATGTCTGGTGAAGTACGATAATGGTCAGATGAAATCGATAGTTACTT
GTCTCAGTGATGGTTACCATACCTGATATCAATGTTTGGGAACAGCTGAC
ATTAGTCCTTGACCAAATAAAAGTAAGGTTACATGAAATTAGACTAGCTA
ATAACTAAAAAAGATGATCGTTTTATCTACCCAAACACCAACTCACCTTT
ACACCACATTCATAATAGGCTGAATTCAAGTGAAAGACTCGAATAAGTAA
ACGTACACTGAAAATTCTAAGAGTCATAACAAGAGAATGAAAGGAAATTA
TTTCCATACGATATGAGAACGACGGAGAAGTAATCCCTGACAGAAAATCA
AGATTAGATTATGAACCCGTTTCATACCAAGCACGAAGAACCAACGTATC
CTGACAGGACGATTCCAGAATCACGATACAGATCTCAGCCCGAGCAGCGG
CCCGCTGACGACAAGTGCTCTGGGACTCGGGTTACACGATATCTACAGAC
AGAAATTCGGACTGGCCAATAGATCCCAGGAGAAGGAATGATGAAATAGA
GCTACCGGCAGGAATAATCAAACGGGAACCGAGTCGGAACCCGGCATGAG
AGGCCCGTCAGAAAGCCGAACTCAAATTGGCCAGCTTAGAAGCGAAATGC
AAAGAAGTACAACAAGAAACTGCCACTCATTGATCTACATTAGTAAAGTT
AAACGGAAATGTAAATTAAGCGAATACTGAAACATAAAAATGAACCTTAT
TCGTTCAATGAGCAAAGAACTGAGAAAGTATCGACGGGAGAATTCAGAGT
TGAGTGCTCAACTCTTTCAGGTGAGTCGTGAAATTCAGAAGGTCAAATAT
ACATGGGTCAAGCCAGATCGGACAAATAAAATCTACCAGCAACTAACGGC
TACACAGCGAGGGTGGGCCGAAGAAAAACAGCCGGTACAAGCACAACGAA
CACAGATCCGTGGACTAGAAGTGGTTTTATCGGCTTGTCAGGAGGACAAT
GCTATAACTTACCCGTTGGTCTTTGCCCCAGCGCAACTGGCACATCGAGA
GACACACCGACCAGATGTTTCATTGGAAGCCAAACGATCCCGTCCCCGAC
CCGGAAAATTAGAACGTGCCCGTCGTCGGCAATTACAATTGCTTACAACT
ACCAACTGAACTGTTAAATCTTGATGTTTAAGTGCTCACAAAAGCTTATC
TTAATTGTCG
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protein sequence of SMED30016710-orf-1

>SMED30016710-orf-1 ID=SMED30016710-orf-1|Name=SMED30016710-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=140bp
MNLIRSMSKELRKYRRENSELSAQLFQVSREIQKVKYTWVKPDRTNKIYQ
QLTATQRGWAEEKQPVQAQRTQIRGLEVVLSACQEDNAITYPLVFAPAQL
AHRETHRPDVSLEAKRSRPRPGKLERARRRQLQLLTTTN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000418head
PLANA:0003116parenchymal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 4..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..127