C2H2-type domain-containing protein

Overview
NameC2H2-type domain-containing protein
Smed IDSMED30016687
Length (bp)597
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of C2H2-type domain-containing protein (SMED30016687) t-SNE clustered cells

Violin plots show distribution of expression levels for C2H2-type domain-containing protein (SMED30016687) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of C2H2-type domain-containing protein (SMED30016687) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for C2H2-type domain-containing protein (SMED30016687) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30016687

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
neoblastSMED30016687SMESG000060519.1 SMESG000049831.1 SMESG000043010.1 dd_Smed_v4_22559_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: D7GXL4 (Rho_N domain-containing protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC006914 PE=4 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.218e-13
Identity = 42/129 (32.56%), Postives = 76/129 (58.91%), Query Frame = 2 
Query:   32 KIERFTQLGSGWTISRIREIHFILTKYSQMNRLTGHGFIETPIALKGKRAIINIKNSDNLCFIYSILALLKHDVLVNNRSNMYSYTNFLNELNYDEIDDCPMRLCNISRFEEKNPGLAINVLSYNPTVI 418
            + +   + GSGWT+  I  +   + KY+    L+G+ ++E P  +K K+A +N+KN+DN CF+YSI++ L       +R N Y+   ++NELN++ I + P+++ +I +FE  N  + + V SY   + 
Sbjct:  306 RCDELQEKGSGWTLKNINHLRININKYTP---LSGNSYVELPKWIKDKKACVNVKNNDNKCFMYSIISCLHQAKEHVDRLNHYNKPEYINELNFEGI-NFPVKIQDIPKFESHN-KINVTVFSYEEQIF 429
[Close]
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A2B4RKZ6 (Uncharacterized transposon-derived protein F54H12.3 OS=Stylophora pistillata OX=50429 GN=F54H12.3 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.814e-13
Identity = 50/133 (37.59%), Postives = 69/133 (51.88%), Query Frame = 2 
Query:    8 EGVRKLNEKIERFTQLGSGWTISRIREIHFILTKYSQMNRLTGHGFIETPIALKGKRAIINIKNSDNLCFIYSILALLKHDVLVNNRSNMYSYTNFLNELNYDEIDDCPMRLCNISRFEEKNPGLAINVLSYN 406
            E V K+ E +  FT+ GSGWT+  +  +     KY+    L G  +I  P  L  K+AIIN+KN D+ CF + I   L        R +       L  LN+D I D PM L +I RFE  NPGL +NV +++
Sbjct:  727 ECVEKMMESLATFTRNGSGWTVDSVDGLDLHTVKYTP---LKGSSYIPLPQHLANKKAIINMKNKDDKCFKWRIARALNPVEKDQERVSKILIKQALR-LNFDGI-DFPMELKSIGRFERLNPGLGVNVYTWS 854
[Close]
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A4Y2I7M8 (Uncharacterized protein (Fragment) OS=Araneus ventricosus OX=182803 GN=AVEN_191623_1 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.093e-13
Identity = 50/131 (38.17%), Postives = 67/131 (51.15%), Query Frame = 2 
Query:   11 GVRKLNEKIERFTQLGSGWTISRIREIHFILTKYSQMNRLTGHGFIETPIALKGKRAIINIKNSDNLCFIYSILALLKHDVLVNNRSNMYSYTNFLNELNYDEIDDCPMRLCNISRFEEKNPGLAINVLSY 403
            G  K+    E F   GSGW I  I  +      Y   + L    FI  P A+  KRAIINIKN+DN CF++ +LA L H    N +  + +Y  F+  LN D+I   P  L  I RFE+ N  ++INV  +
Sbjct:   87 GFVKIQTSCEEFQTRGSGWVIDAILYLEVNTCTY---HPLAASSFIPLPSAIAKKRAIINIKNTDNKCFLWCVLAAL-HPATTNPQ-RVSNYLPFVKSLNLDKITF-PTPLSQIDRFEKLN-NISINVFGF 210
[Close]
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A2B4RAD9 (Uncharacterized protein OS=Stylophora pistillata OX=50429 GN=AWC38_SpisGene21206 PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.003e-13
Identity = 52/146 (35.62%), Postives = 74/146 (50.68%), Query Frame = 2 
Query:    8 EGVRKLNEKIERFTQLGSGWTISRIREIHFILTKYSQMNRLTGHGFIETPIALKGKRAIINIKNSDNLCFIYSILALLKHDVLVNNRSNMYSYTNFLNELNYDEIDDCPMRLCNISRFEEKNPGLAINVLSY----NPTVINNDEN 433
            E V K+ E +  FT+ GSGWT++ +  +     KY+    L G  FI  P  L  K+AIIN+KN D  CF++ +   L        R +       L  L +D I + PM + +ISRFE  NPGL +NV  Y    NP  ++  +N
Sbjct:  328 ECVDKMMESLATFTRNGSGWTVNSVDGLDLHTVKYTP---LKGSSFIPLPQHLANKKAIINMKNGDQQCFMWCVTRALNPVERDQERISKTLRKQALR-LKFDGI-NFPMEVKDISRFERLNPGLGVNVYMYEGGLNPLRVSEAQN 468
[Close]
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A2B4SJP5 (Uncharacterized protein OS=Stylophora pistillata OX=50429 GN=AWC38_SpisGene5933 PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.036e-13
Identity = 41/128 (32.03%), Postives = 75/128 (58.59%), Query Frame = 2 
Query:   20 KLNEKIERFTQLGSGWTISRIREIHFILTKYSQMNRLTGHGFIETPIALKGKRAIINIKNSDNLCFIYSILALLKHDVLVNNRSNMYSYTNFLNELNYDEIDDCPMRLCNISRFEEKNPGLAINVLSY 403
            +L +++  FTQL SGW + R   +   + KY+      G+ +++   ++  K+AIIN+KN D+ CF ++ L+ L    +   R N  +Y  F  ELN+  +   PM++ NIS+FE++NP ++++ + Y
Sbjct:  256 RLEDQMSNFTQLASGWVLERNNNVALQMVKYAPRK---GNSYLQLHPSIADKKAIINVKNKDDHCFKWATLSALHPMEIHPERVN--NYIPFEEELNFSGL-TLPMKINNISQFEKQNPSISVSFIGY 377
[Close]
BLAST of C2H2-type domain-containing protein vs. Ensembl Nematostella
Match: EDO44110 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RWZ0])

HSP 1 Score: 58.5362 bits (140), Expect = 1.869e-10
Identity = 40/128 (31.25%), Postives = 63/128 (49.22%), Query Frame = 2 
Query:   35 IERFTQLGSGWTISRIREIHFILTKYSQMNRLTGHGFIETPIALKGKRAIINIKN-SDNLCFIYSILALLKHDVLVNNRSNMYSYTNFLNELNYDEIDDCPMRLCNISRFEEKNPGLAINVLSYNPTV 415
            +E+F + GSGW   R  ++ +          L+G  +I  P  L  K+AIIN+KN SD+ CF +++ + +        R N    T      N+  I + P+ L  I  FE++NP  A+NV  Y  +V
Sbjct:    9 VEKFQKQGSGW---RFDQVEYFDINIDPXKPLSGSSYIPLPSELASKKAIINVKNESDHECFKWAVTSAIYPKETHPERLNK-QMTESSKNFNWSGI-EFPISLKQIDEFEKQNPH-AVNVYGYEGSV 130
[Close]
BLAST of C2H2-type domain-containing protein vs. Ensembl Nematostella
Match: EDO48021 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RKP4])

HSP 1 Score: 56.6102 bits (135), Expect = 9.625e-10
Identity = 42/137 (30.66%), Postives = 67/137 (48.91%), Query Frame = 2 
Query:   23 LNEKIERFTQLGSGWTISRIREIHFILTKYSQMNRLTGHGFIETPIALKGKRAIINIKNS-DNLCFIYSILALL----KHDVLVNNRSNMYSYTNFLNELNYDEIDDCPMRLCNISRFEEKNPGLAINVLSYNPTVI 418
            L E IERF   GSGW   R  ++ +          L+G  +I+ P  L  K+AIIN+KN  D+ CF +++ + +    K    +N +    S      + ++  I + P+ L  I +FE++NP   +NV  YN  V 
Sbjct:  201 LLELIERFQNKGSGW---RFDQVEYFDINIDPFEPLSGSSYIQLPSKLASKQAIINVKNKNDHECFKWAVTSAMYPRGKDPQRLNEQIRESS-----KKFDWAGI-EFPVSLKQIDKFEKQNP-YTVNVFGYNGEVF 327
[Close]
BLAST of C2H2-type domain-containing protein vs. Ensembl Nematostella
Match: EDO46109 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RR56])

HSP 1 Score: 54.299 bits (129), Expect = 7.767e-9
Identity = 36/128 (28.12%), Postives = 64/128 (50.00%), Query Frame = 2 
Query:   35 IERFTQLGSGWTISRIREIHFILTKYSQMNRLTGHGFIETPIALKGKRAIINIKNS-DNLCFIYSILALLKHDVLVNNRSNMYSYTNFLNELNYDEID----DCPMRLCNISRFEEKNPGLAINVLSY 403
            +E+F + GSGW   R+      +  +   + L+G  ++E P  L  K+AIIN++N  D+ CF +++ +      +   R N    +  + E N +  D    + P+ L  I +FE +NP   +NV +Y
Sbjct:  585 VEKFQKQGSGWQFDRVEYFDINIDPF---DPLSGSSYVELPKELAVKKAIINVRNENDHKCFKWAVTS-----AVYPKRDNPQRLSRKMME-NSERFDWSGIEFPVSLRQIDKFERQNPH-TVNVFTY 702
[Close]
BLAST of C2H2-type domain-containing protein vs. Ensembl Nematostella
Match: EDO34977 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SMS5])

HSP 1 Score: 53.9138 bits (128), Expect = 9.888e-9
Identity = 36/128 (28.12%), Postives = 64/128 (50.00%), Query Frame = 2 
Query:   35 IERFTQLGSGWTISRIREIHFILTKYSQMNRLTGHGFIETPIALKGKRAIINIKNS-DNLCFIYSILALLKHDVLVNNRSNMYSYTNFLNELNYDEID----DCPMRLCNISRFEEKNPGLAINVLSY 403
            +E+F + GSGW   R+      +  +   + L+G  ++E P  L  K+AIIN++N  D+ CF +++ +      +   R N    +  + E N +  D    + P+ L  I +FE +NP   +NV +Y
Sbjct:  158 VEKFQKQGSGWQFDRVEYFDINIDPF---DPLSGSSYVELPKELAVKKAIINVRNENDHKCFKWAVTS-----AVYPKRDNPQRLSRKMME-NSERFDWSGIEFPVSLRQIDKFERQNPH-TVNVFTY 275
[Close]
BLAST of C2H2-type domain-containing protein vs. Ensembl Nematostella
Match: EDO34080 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SQD5])

HSP 1 Score: 52.7582 bits (125), Expect = 2.217e-8
Identity = 38/128 (29.69%), Postives = 61/128 (47.66%), Query Frame = 2 
Query:   35 IERFTQLGSGWTISRIREIHFILTKYSQMNRLTGHGFIETPIALKGKRAIINIKNS-DNLCFIYSILALLKHDVLVNNRSNMYSYTNFLNELNYDEIDDCPMRLCNISRFEEKNPGLAINVLSYNPTV 415
            +E+F + GSGW   R  ++ +          L+G  +I     L  K+AIIN+KN  D+ CF +++ + +        R N    T      N+  I + P+ L  I  FE++NP  A+NV  Y  +V
Sbjct:  362 VEKFQKQGSGW---RFDQVEYFDINIDPFKPLSGSSYIPLLSELASKKAIINVKNENDHECFKWAVTSAIYPKETHPERLNK-QMTESSKNFNWSGI-EFPISLKQIDEFEKQNPH-AVNVYGYEGSV 483
[Close]
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000007603.1 (SMESG000007603.1)

HSP 1 Score: 275.789 bits (704), Expect = 1.161e-86
Identity = 135/145 (93.10%), Postives = 137/145 (94.48%), Query Frame = 2 
Query:    2 LVEGVRKLNEKIERFTQLGSGWTISRIREIHFILTKYSQMNRLTGHGFIETPIALKGKRAIINIKNSDNLCFIYSILALLKHDVLVNNRSNMYSYTNFLNELNYDEIDDCPMRLCNISRFEEKNPGLAINVLSYNPTVINNDENE 436
            L EGVRKLNEKIERFTQLGSGWTISRIREIHFI TKY Q+NRLT HG IETP+ALKGK AIINIKNSDNLCFIYSILALLKHDVLVNNRS MYSYTNFLNELNYDEIDDCPMRLCNISRFEEKNP LAINVLSYNPTVINNDENE
Sbjct:  184 LDEGVRKLNEKIERFTQLGSGWTISRIREIHFIFTKYFQINRLTDHGLIETPLALKGKIAIINIKNSDNLCFIYSILALLKHDVLVNNRSKMYSYTNFLNELNYDEIDDCPMRLCNISRFEEKNPCLAINVLSYNPTVINNDENE 328
[Close]
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000060519.1 (SMESG000060519.1)

HSP 1 Score: 262.692 bits (670), Expect = 5.566e-82
Identity = 130/145 (89.66%), Postives = 136/145 (93.79%), Query Frame = 2 
Query:    2 LVEGVRKLNEKIERFTQLGSGWTISRIREIHFILTKYSQMNRLTGHGFIETPIALKGKRAIINIKNSDNLCFIYSILALLKHDVLVNNRSNMYSYTNFLNELNYDEIDDCPMRLCNISRFEEKNPGLAINVLSYNPTVINNDENE 436
            LVEGVRKLNEKIERFTQL S WTISRIREIHFIL KYSQ+NRLTGH FIETP+ LKGK AIINIKNS+NLCFIYSILALLKHDVL NNRSNMYSYTNFLN LNY+EIDDCPMRLCNISRFEE+NPGLAINVLS NPTVINNDEN+
Sbjct:  339 LVEGVRKLNEKIERFTQLCSEWTISRIREIHFILNKYSQINRLTGHRFIETPLNLKGKGAIINIKNSENLCFIYSILALLKHDVLGNNRSNMYSYTNFLNGLNYEEIDDCPMRLCNISRFEERNPGLAINVLSCNPTVINNDENK 483
[Close]
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000035558.1 (SMESG000035558.1)

HSP 1 Score: 223.787 bits (569), Expect = 2.103e-67
Identity = 115/144 (79.86%), Postives = 120/144 (83.33%), Query Frame = 2 
Query:    5 VEGVRKLNEKIERFTQLGSGWTISRIREIHFILTKYSQMNRLTGHGFIETPIALKGKRAIINIKNSDNLCFIYSILALLKHDVLVNNRSNMYSYTNFLNELNYDEIDDCPMRLCNISRFEEKNPGLAINVLSYNPTVINNDENE 436
            VEGVRKLNEKIERFTQLGSGWTISRI+EIHFILTKYSQ+NRLT HGFIET + LKGKRAIINIKNSDNLC IYSILALLKHDVLVNNR                  +DC MRLCNIS FEEKNPGLAINVLSYNPTVINNDEN+
Sbjct:  986 VEGVRKLNEKIERFTQLGSGWTISRIKEIHFILTKYSQINRLTNHGFIETTLNLKGKRAIINIKNSDNLCVIYSILALLKHDVLVNNR------------------NDCLMRLCNISMFEEKNPGLAINVLSYNPTVINNDENK 1111
[Close]
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000054673.1 (SMESG000054673.1)

HSP 1 Score: 199.904 bits (507), Expect = 8.008e-61
Identity = 102/118 (86.44%), Postives = 105/118 (88.98%), Query Frame = 2 
Query:    2 LVEGVRKLNEKIERFTQLGSGWTISRIREIHFILTKYSQMNRLTGHGFIETPIALKGKRAIINIKNSDNLCFIYSILALLKHDVLVNNRSNMYSYTNFLNELNYDEIDDCPMRLCNIS 355
             VEGVRKLNEKIERFTQ GSGWTISRI EIHFILTKYSQ+NRLTGHGFIET + LKGKRAIINIKNSDNLCFIYSILAL KHDVLVNNR     YTNF NELNY EI+DCPMRLCNIS
Sbjct:   35 FVEGVRKLNEKIERFTQFGSGWTISRILEIHFILTKYSQINRLTGHGFIETLLVLKGKRAIINIKNSDNLCFIYSILALSKHDVLVNNR-----YTNFQNELNY-EINDCPMRLCNIS 146
[Close]
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000023611.1 (SMESG000023611.1)

HSP 1 Score: 181.03 bits (458), Expect = 1.427e-52
Identity = 91/141 (64.54%), Postives = 108/141 (76.60%), Query Frame = 2 
Query:    2 LVEGVRKLNEKIERFTQLGSGWTISRIREIHFILTKYSQMNRLTGHGFIETPIALKGKRAIINIKNSDNLCFIYSILALLKHDVLVNNRSNMYSYTNFLNELNYDEIDDCPMRLCNISRFEEKNP--GLAINVLSYNPTVI 418
            L EGV KLNEKIE+FT LGSGW I  I EIHFILTKY+ +NRL+GH +I+TP ALK K AI+NIKN+D+ CF+YSIL LLK D++  N   +  YT FL+EL YDEI DCPM+L NI +FE+KN    LAINV SY PTVI
Sbjct:  772 LSEGVNKLNEKIEQFTHLGSGWRIINIMEIHFILTKYAPINRLSGHKYIKTPSALKNKGAIVNIKNNDDKCFLYSILYLLKKDIIGENPQRVSKYTEFLDELEYDEITDCPMKLINIPKFEKKNSTLKLAINVFSYTPTVI 912
The following BLAST results are available for this feature:
BLAST of C2H2-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
D7GXL41.218e-1332.56Rho_N domain-containing protein OS=Tribolium casta... [more]
A0A2B4RKZ61.814e-1337.59Uncharacterized transposon-derived protein F54H12.... [more]
A0A4Y2I7M85.093e-1338.17Uncharacterized protein (Fragment) OS=Araneus vent... [more]
A0A2B4RAD96.003e-1335.62Uncharacterized protein OS=Stylophora pistillata O... [more]
A0A2B4SJP56.036e-1332.03Uncharacterized protein OS=Stylophora pistillata O... [more]
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BLAST of C2H2-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO441101.869e-1031.25Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO480219.625e-1030.66Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO461097.767e-928.13Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO349779.888e-928.13Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO340802.217e-829.69Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of C2H2-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000007603.11.161e-8693.10SMESG000007603.1[more]
SMESG000060519.15.566e-8289.66SMESG000060519.1[more]
SMESG000035558.12.103e-6779.86SMESG000035558.1[more]
SMESG000054673.18.008e-6186.44SMESG000054673.1[more]
SMESG000023611.11.427e-5264.54SMESG000023611.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30016687 ID=SMED30016687|Name=C2H2-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=597bp
TCTTGTTGAAGGAGTTAGAAAATTAAATGAAAAAATAGAAAGATTTACTC
AATTAGGTAGTGGATGGACTATTTCTAGAATTCGAGAAATTCATTTTATC
TTGACTAAATATTCCCAAATGAATAGGTTAACTGGTCACGGTTTTATTGA
AACTCCTATTGCGCTTAAAGGAAAAAGAGCAATTATTAATATTAAGAATA
GTGACAATCTTTGTTTTATATATAGTATCTTGGCTTTATTGAAGCATGAC
GTTCTTGTAAATAATCGTAGTAATATGTATAGCTATACTAACTTCCTGAA
TGAATTAAATTATGATGAGATAGATGACTGTCCTATGAGATTGTGCAATA
TAAGTAGGTTTGAGGAAAAGAATCCAGGTCTTGCAATTAATGTCTTGTCT
TATAACCCAACTGTTATTAATAATGATGAAAATGAAAATGACGATTTTGT
TCCTCATCACCCTCATCCCTTCCCGAACCGCCCTGTCTAACTACTCCACC
TCTCCATAACCTCCGATTTTTAATTTCCTTTTCTTTCCTTTTTAGCATGA
ACGGCAATAATACGTCCGAGTTGAACAATCTGCCAAGGATTCCCCGA
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protein sequence of SMED30016687-orf-1

>SMED30016687-orf-1 ID=SMED30016687-orf-1|Name=SMED30016687-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=163bp
LVEGVRKLNEKIERFTQLGSGWTISRIREIHFILTKYSQMNRLTGHGFIE
TPIALKGKRAIINIKNSDNLCFIYSILALLKHDVLVNNRSNMYSYTNFLN
ELNYDEIDDCPMRLCNISRFEEKNPGLAINVLSYNPTVINNDENENDDFV
PHHPHPFPNRPV*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding