SMED30016666
Overview
Neoblast Clusters
Zeng et. al., 2018
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny AppEmbryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30016666 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 9
Homology
BLAST of SMED30016666 vs. TrEMBL
Match: A0A3R7DBL8 (Uncharacterized protein (Fragment) OS=Clonorchis sinensis OX=79923 GN=CSKR_5664s PE=4 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.782e-32 Identity = 105/383 (27.42%), Postives = 176/383 (45.95%), Query Frame = 3 Query: 111 KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRC----ASHFKSIDSYD-------------------------YENCCQFIAQCLLQPSCIDYYSPTC-YYVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQVKIKVSI-----------------------------PHWMK-LEFHLSENVTRPNIKGKLTTTPVYTYESTLMKMQHRFRINEYFQDAILHFKS--NKFHLYKLK--ERFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLKLEKNNF-QAFNYYVNNIDQSHDINIAF--PEKSSILKSAIC 1058 KA++LP + FYCT NSP++N +F+E+ITE+ C R+ C+ C R C A+ S D++D + CC C PSC++Y+SPTC Y ++H +C++G T +FTLNP+F N SFMCH++ + +Y + + + P MK L + +E+ N++G V + ++++H+ + ++ IL K+ +F++Y+LK E F P +KH + KY +Q + PF N+ +W SC NI ++++Q +Y+E+ I I L + N AF Y +N I + + S+L+SA+C Sbjct: 1 KASFLPPQRNSFYCTTNSPLVNIVFNERITERQSYLKDSHCDTQRRLCQTCLRRSCWRESAALNSSSDTWDQTLGDDLAQKWDLLGDASADFKRAKAKECCS--VDCYSIPSCLEYFSPTCQAYTIHSQHVQEVCLQGKTLKFTLNPEFDLANGSFMCHLTRVPPENLYTINAWLVVNGTWKTDPVSHVVSLRPPNGIRDSRGAHSPQSMKHLRYRRAESSLNRNLRG------VVLLWNDKLRVEHQSSAS-LWEQLILKRKNAPGQFYVYRLKSFEEFGLAPPQYEKHREEKYATVQFTTPFLHNTESWGNESCQLNISHMHKSQPIYDETSEIPIVLASPTRRNANGAFQYTLNEAQLGTKIQVTMEVENQDSLLRSALC 374
BLAST of SMED30016666 vs. TrEMBL
Match: A0A074ZJI3 (Uncharacterized protein (Fragment) OS=Opisthorchis viverrini OX=6198 GN=T265_14627 PE=4 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.323e-31 Identity = 110/383 (28.72%), Postives = 177/383 (46.21%), Query Frame = 3 Query: 111 KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRC----ASHFKSIDSYD-------------------------YENCCQFIAQCLLQPSCIDYYSPTC-YYVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQVK-----------------IKVSIPHWMK--LEFHLSENVTRP-----------NIKGKLTTTPVYTYESTLMKMQHRFRINEYFQDAILHFKS--NKFHLYKLK--ERFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLK-LEKNNFQAFNYYVNNIDQSHDINIAFPEKS--SILKSAIC 1058 KA++LP + FYCT NSP++N +F+E+ITE+ C R+ C+ C R C A+ S D++D + CC C PSCI+Y+S TC Y ++H +C++G T +FTLNP+F N SFMCH++ + +Y + + + P+ ++ E H S+ V N++G V + L +++H+ N + Q IL K+ +F++Y+LK + F P +KH + KY +Q + PF N+ +W SC NI ++++Q LY+E+ I I L KN AF Y +N I + +S S+L+SA+C Sbjct: 1 KASFLPPQRNSFYCTTNSPLVNIVFNERITERQSYLRDSHCDTQRRLCQTCLRRSCWRESAAMNSSSDTWDQTLGDELAQKWELLGDASANFKRAKVKECCG--VDCYSIPSCIEYFSATCQAYTIHSQHIQEVCLQGKTLKFTLNPEFDLANGSFMCHLTHVPPENLYTINTWLVVNGTWKTDPVSHVVSLRPPNGIRDTREAHSSKAVKHSRYRRAESSWSRNMRGM-----VLLWNDKL-RVEHQSSANLWGQ-LILKRKNALGQFYVYRLKSFDEFGLALPQYEKHREEKYATVQFTTPFLHNTESWGNESCQLNISHMHKSQPLYDETSEIPIVLASPTRKNANGAFQYTLNGAQLGPKIQVTMEAESKHSLLRSALC 374
BLAST of SMED30016666 vs. TrEMBL
Match: A0A5K4F598 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 3.140e-26 Identity = 99/390 (25.38%), Postives = 165/390 (42.31%), Query Frame = 3 Query: 111 KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRC---------------------ASHFKSIDSYDY------------------------ENCCQFIAQCLLQPSCIDYYSPTC-YYVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQV------------KIKVSIPHWMKLEFHLSENVTRPNIKGKLTTTPVYTYESTLMK------------MQHRFRINEYFQDAILHFKSNK-FHLYKLK--ERFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLKL-EKNNFQAFNYYVNNIDQSHDINIAFPEKSSILKSAIC 1058 KA+YLP + FYCT NSP++N +F E I E C R+ C+ C + C ++H + +++D+ +CC +C PSC+DY+ C Y + +C++G T +FTLNP+F F N ++ CH+ KIIY + K+ S P +K L N P K + T E +K ++H+ + + DAI+H +K L++LK + F P +++H + KY +Q S PF ++ NW ++C NI ++ Q +Y E+ +S++ + ++ AF Y + N + I I S+L +A C Sbjct: 314 KASYLPPQLNSFYCTINSPLVNKLFQENIIESQSYLKDMHCDTQRRICQTCLKQSCLKSKTELFSEMNLKKAQHNLLSNHGEIENNHDFNEEIFYGNLLRVNTIEQNIWQANDPDCCGI--KCYSNPSCLDYFGSRCETYTSRHSNATEICLQGKTLKFTLNPEFDFTNGTYTCHVQHRPPKIIYTIETWLTLEIQGLPKLVWSSPR-LKYNIQLMSNGRPPRRKSNKVDYDIQTLEQQFLKHGILLLWNENIYLEHKTGL-PIWDDAIVHRSVDKEISLFQLKFLKDFGTEPPPLQRHKEEKYIVVQFSRPFQYSTSNWGNQTCQINISHIHRAQPIYAENTKVSVETTSIPQRTTSNAFLYTLKNSQKRSTIEIKSHINHSLLYTAAC 699
BLAST of SMED30016666 vs. TrEMBL
Match: A0A4Z2DMR9 (Uncharacterized protein OS=Schistosoma japonicum OX=6182 GN=EWB00_010804 PE=4 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 3.171e-26 Identity = 101/389 (25.96%), Postives = 172/389 (44.22%), Query Frame = 3 Query: 111 KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRC---------------------ASHFKSI------DSYDYEN------------------CCQFIAQCLLQPSCIDYYSPTC-YYVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQVKIKV-----SIPH--W----MKLEFHLSE------------NVTRPNIKGKLTTTPVYTYESTLMKMQHRFRINEYFQDAILHFKSNK-FHLYKLK--ERFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLL-KLEKNNFQAFNYYVNNIDQSHDINIAFPEKSSILKSAIC 1058 KA+YLP + FYCT NSP++N++F E I E C R+ C+ C + C ++H ++I D YEN CC +C PSC+DY+S C Y + +C++G T +FTLNP+F F+N ++ CH+ KI+Y ++ + S+P W +K + +L N + N++ +L V + ++H+ + + DAI+H + K LY+LK F P + +H + KY +Q + PF ++ NW ++C NI ++ Q +Y E + ++++ ++K AF Y + N + I I S+L +A+C Sbjct: 327 KASYLPPQLNSFYCTVNSPLVNNLFQENIVESQSYLKDLHCDTQRRICQTCLKQSCLQSKTEMNFEVSMKQTQSSIISNHVETITDSNFDDGIFYENLLRVNAIEQNIWQANDPDCCGI--KCYSTPSCLDYFSFRCEAYTSRHSNATEICLQGKTLKFTLNPEFDFSNGTYTCHVRYSPPKILYTIETWLTLKTQSLPKLIWSSSRLKYDIYLKNSGRYLGSRLSKLNNSSHNLERQLQKHGVLLLWDGSIYLEHQTDL-PIWNDAIVHRSAEKEISLYQLKVLTDFGSEPPTLHRHREEKYVVVQFTKPFQYSTANWGNQTCLINISHIHRAQPIYAEHTKVPMEIISGVQKTTSNAFLYILKNSQKRSTIEIRSHMNHSLLYTAVC 712
BLAST of SMED30016666 vs. TrEMBL
Match: A0A5K4F6N1 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 3.264e-26 Identity = 99/390 (25.38%), Postives = 165/390 (42.31%), Query Frame = 3 Query: 111 KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRC---------------------ASHFKSIDSYDY------------------------ENCCQFIAQCLLQPSCIDYYSPTC-YYVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQV------------KIKVSIPHWMKLEFHLSENVTRPNIKGKLTTTPVYTYESTLMK------------MQHRFRINEYFQDAILHFKSNK-FHLYKLK--ERFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLKL-EKNNFQAFNYYVNNIDQSHDINIAFPEKSSILKSAIC 1058 KA+YLP + FYCT NSP++N +F E I E C R+ C+ C + C ++H + +++D+ +CC +C PSC+DY+ C Y + +C++G T +FTLNP+F F N ++ CH+ KIIY + K+ S P +K L N P K + T E +K ++H+ + + DAI+H +K L++LK + F P +++H + KY +Q S PF ++ NW ++C NI ++ Q +Y E+ +S++ + ++ AF Y + N + I I S+L +A C Sbjct: 323 KASYLPPQLNSFYCTINSPLVNKLFQENIIESQSYLKDMHCDTQRRICQTCLKQSCLKSKTELFSEMNLKKAQHNLLSNHGEIENNHDFNEEIFYGNLLRVNTIEQNIWQANDPDCCGI--KCYSNPSCLDYFGSRCETYTSRHSNATEICLQGKTLKFTLNPEFDFTNGTYTCHVQHRPPKIIYTIETWLTLEIQGLPKLVWSSPR-LKYNIQLMSNGRPPRRKSNKVDYDIQTLEQQFLKHGILLLWNENIYLEHKTGL-PIWDDAIVHRSVDKEISLFQLKFLKDFGTEPPPLQRHKEEKYIVVQFSRPFQYSTSNWGNQTCQINISHIHRAQPIYAENTKVSVETTSIPQRTTSNAFLYTLKNSQKRSTIEIKSHINHSLLYTAAC 708
BLAST of SMED30016666 vs. Planmine SMEST
Match: SMESG000016698.1 (SMESG000016698.1) HSP 1 Score: 1996.86 bits (5172), Expect = 0.000e+0 Identity = 1132/1132 (100.00%), Postives = 1132/1132 (100.00%), Query Frame = 3 Query: 111 KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRCASHFKSIDSYDYENCCQFIAQCLLQPSCIDYYSPTCYYVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQVKIKVSIPHWMKLEFHLSENVTRPNIKGKLTTTPVYTYESTLMKMQHRFRINEYFQDAILHFKSNKFHLYKLKERFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLKLEKNNFQAFNYYVNNIDQSHDINIAFPEKSSILKSAICXXXXXXXXXXXXXXKINFALKSQFNWTWFLEIKGEVESSYEYLNVKLLEKSKSKIVFNKDILIVELPVSEKNVFSVNHNLQFFPDSIDYFSKLELILILSDCHQSISYRMYIEQKFNQTFTSFSKNNTKFERLYETMFTNRYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHINKFYNKGCLRVKCQSWSWIVRSDKKRKFIIIVYVTLRIMYXXXXXXXXXXXXXXXXXXXXXXQSKSISLISLPMSTKDNLLKIEIEKNHEKCDLITKLQLKKFLNDLIENRNDTIQFWYQSNVSIPKTSAELFQMNLTXXXXXXXXXXXXXXXXXLKLRLADQIGPMKEIVDETVKLKWLSIISSGTKDKENFNFNILPIFGVSQMQSIILSKLNGTTKGLSKSKNFQRIFKNQINLIKINLVRGRFKRYFNLNEREKQILSKAHRVNRNANNLKFIVGNEMFSIIKIRISXXXXXXXXXXFRCYNIYRDFQIIWFGSERLLPYSYFHQITELQSNSELDQFLMERKNINTRLDSNDSKKSFVISSLDRLKFFKNNYYITLLTIWIRSLFNLQIKQFPNENVDRLQKKIFSLFSVYSKRRKHQLEVEFKLSLNNQKIQFXXXXXXXXXXXXXXXXEFCTILRIFSNSKNNGILKMKMQSEFLFIPLQIVEECLKNENVSNNVNRFQQQHCYVTNSSVRIHPDSLTSGRRQNKIELFIILQIRDFLLIFTSAXXXXXXXXXXXXXXXXSKNHLLEKRISGVKILHFQSFLSNEPPTPPCNITSSSYPILRSSNSDDNDLYFNIDSRSPMKYLLIRLNDNRETDI 3506 KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRCASHFKSIDSYDYENCCQFIAQCLLQPSCIDYYSPTCYYVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQVKIKVSIPHWMKLEFHLSENVTRPNIKGKLTTTPVYTYESTLMKMQHRFRINEYFQDAILHFKSNKFHLYKLKERFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLKLEKNNFQAFNYYVNNIDQSHDINIAFPEKSSILKSAICSLHHLNSRSNLSELKINFALKSQFNWTWFLEIKGEVESSYEYLNVKLLEKSKSKIVFNKDILIVELPVSEKNVFSVNHNLQFFPDSIDYFSKLELILILSDCHQSISYRMYIEQKFNQTFTSFSKNNTKFERLYETMFTNRYLFSILRMLFLLFIMISIIILVIVSMKVLLHINKFYNKGCLRVKCQSWSWIVRSDKKRKFIIIVYVTLRIMYTFIFTSTCIISIILTININSITQSKSISLISLPMSTKDNLLKIEIEKNHEKCDLITKLQLKKFLNDLIENRNDTIQFWYQSNVSIPKTSAELFQMNLTKINSKIYKYIQKKIMKNLKLRLADQIGPMKEIVDETVKLKWLSIISSGTKDKENFNFNILPIFGVSQMQSIILSKLNGTTKGLSKSKNFQRIFKNQINLIKINLVRGRFKRYFNLNEREKQILSKAHRVNRNANNLKFIVGNEMFSIIKIRISLLVLDLMLILFRCYNIYRDFQIIWFGSERLLPYSYFHQITELQSNSELDQFLMERKNINTRLDSNDSKKSFVISSLDRLKFFKNNYYITLLTIWIRSLFNLQIKQFPNENVDRLQKKIFSLFSVYSKRRKHQLEVEFKLSLNNQKIQFKSYKHYQKYQQNYQSHEFCTILRIFSNSKNNGILKMKMQSEFLFIPLQIVEECLKNENVSNNVNRFQQQHCYVTNSSVRIHPDSLTSGRRQNKIELFIILQIRDFLLIFTSAFLISLLSMNLLQLIFNSKNHLLEKRISGVKILHFQSFLSNEPPTPPCNITSSSYPILRSSNSDDNDLYFNIDSRSPMKYLLIRLNDNRETDI Sbjct: 223 KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRCASHFKSIDSYDYENCCQFIAQCLLQPSCIDYYSPTCYYVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQVKIKVSIPHWMKLEFHLSENVTRPNIKGKLTTTPVYTYESTLMKMQHRFRINEYFQDAILHFKSNKFHLYKLKERFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLKLEKNNFQAFNYYVNNIDQSHDINIAFPEKSSILKSAICSLHHLNSRSNLSELKINFALKSQFNWTWFLEIKGEVESSYEYLNVKLLEKSKSKIVFNKDILIVELPVSEKNVFSVNHNLQFFPDSIDYFSKLELILILSDCHQSISYRMYIEQKFNQTFTSFSKNNTKFERLYETMFTNRYLFSILRMLFLLFIMISIIILVIVSMKVLLHINKFYNKGCLRVKCQSWSWIVRSDKKRKFIIIVYVTLRIMYTFIFTSTCIISIILTININSITQSKSISLISLPMSTKDNLLKIEIEKNHEKCDLITKLQLKKFLNDLIENRNDTIQFWYQSNVSIPKTSAELFQMNLTKINSKIYKYIQKKIMKNLKLRLADQIGPMKEIVDETVKLKWLSIISSGTKDKENFNFNILPIFGVSQMQSIILSKLNGTTKGLSKSKNFQRIFKNQINLIKINLVRGRFKRYFNLNEREKQILSKAHRVNRNANNLKFIVGNEMFSIIKIRISLLVLDLMLILFRCYNIYRDFQIIWFGSERLLPYSYFHQITELQSNSELDQFLMERKNINTRLDSNDSKKSFVISSLDRLKFFKNNYYITLLTIWIRSLFNLQIKQFPNENVDRLQKKIFSLFSVYSKRRKHQLEVEFKLSLNNQKIQFKSYKHYQKYQQNYQSHEFCTILRIFSNSKNNGILKMKMQSEFLFIPLQIVEECLKNENVSNNVNRFQQQHCYVTNSSVRIHPDSLTSGRRQNKIELFIILQIRDFLLIFTSAFLISLLSMNLLQLIFNSKNHLLEKRISGVKILHFQSFLSNEPPTPPCNITSSSYPILRSSNSDDNDLYFNIDSRSPMKYLLIRLNDNRETDI 1354
BLAST of SMED30016666 vs. Planmine SMEST
Match: SMESG000016698.1 (SMESG000016698.1) HSP 1 Score: 1154.04 bits (2984), Expect = 0.000e+0 Identity = 707/707 (100.00%), Postives = 707/707 (100.00%), Query Frame = 3 Query: 1386 MYIEQKFNQTFTSFSKNNTKFERLYETMFTNRYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHINKFYNKGCLRVKCQSWSWIVRSDKKRKFIIIVYVTLRIMYXXXXXXXXXXXXXXXXXXXXXXQSKSISLISLPMSTKDNLLKIEIEKNHEKCDLITKLQLKKFLNDLIENRNDTIQFWYQSNVSIPKTSAELFQMNLTXXXXXXXXXXXXXXXXXLKLRLADQIGPMKEIVDETVKLKWLSIISSGTKDKENFNFNILPIFGVSQMQSIILSKLNGTTKGLSKSKNFQRIFKNQINLIKINLVRGRFKRYFNLNEREKQILSKAHRVNRNANNLKFIVGNEMFSIIKIRISXXXXXXXXXXFRCYNIYRDFQIIWFGSERLLPYSYFHQITELQSNSELDQFLMERKNINTRLDSNDSKKSFVISSLDRLKFFKNNYYITLLTIWIRSLFNLQIKQFPNENVDRLQKKIFSLFSVYSKRRKHQLEVEFKLSLNNQKIQFXXXXXXXXXXXXXXXXEFCTILRIFSNSKNNGILKMKMQSEFLFIPLQIVEECLKNENVSNNVNRFQQQHCYVTNSSVRIHPDSLTSGRRQNKIELFIILQIRDFLLIFTSAXXXXXXXXXXXXXXXXSKNHLLEKRISGVKILHFQSFLSNEPPTPPCNITSSSYPILRSSNSDDNDLYFNIDSRSPMKYLLIRLNDNRETDI 3506 MYIEQKFNQTFTSFSKNNTKFERLYETMFTNRYLFSILRMLFLLFIMISIIILVIVSMKVLLHINKFYNKGCLRVKCQSWSWIVRSDKKRKFIIIVYVTLRIMYTFIFTSTCIISIILTININSITQSKSISLISLPMSTKDNLLKIEIEKNHEKCDLITKLQLKKFLNDLIENRNDTIQFWYQSNVSIPKTSAELFQMNLTKINSKIYKYIQKKIMKNLKLRLADQIGPMKEIVDETVKLKWLSIISSGTKDKENFNFNILPIFGVSQMQSIILSKLNGTTKGLSKSKNFQRIFKNQINLIKINLVRGRFKRYFNLNEREKQILSKAHRVNRNANNLKFIVGNEMFSIIKIRISLLVLDLMLILFRCYNIYRDFQIIWFGSERLLPYSYFHQITELQSNSELDQFLMERKNINTRLDSNDSKKSFVISSLDRLKFFKNNYYITLLTIWIRSLFNLQIKQFPNENVDRLQKKIFSLFSVYSKRRKHQLEVEFKLSLNNQKIQFKSYKHYQKYQQNYQSHEFCTILRIFSNSKNNGILKMKMQSEFLFIPLQIVEECLKNENVSNNVNRFQQQHCYVTNSSVRIHPDSLTSGRRQNKIELFIILQIRDFLLIFTSAFLISLLSMNLLQLIFNSKNHLLEKRISGVKILHFQSFLSNEPPTPPCNITSSSYPILRSSNSDDNDLYFNIDSRSPMKYLLIRLNDNRETDI Sbjct: 1 MYIEQKFNQTFTSFSKNNTKFERLYETMFTNRYLFSILRMLFLLFIMISIIILVIVSMKVLLHINKFYNKGCLRVKCQSWSWIVRSDKKRKFIIIVYVTLRIMYTFIFTSTCIISIILTININSITQSKSISLISLPMSTKDNLLKIEIEKNHEKCDLITKLQLKKFLNDLIENRNDTIQFWYQSNVSIPKTSAELFQMNLTKINSKIYKYIQKKIMKNLKLRLADQIGPMKEIVDETVKLKWLSIISSGTKDKENFNFNILPIFGVSQMQSIILSKLNGTTKGLSKSKNFQRIFKNQINLIKINLVRGRFKRYFNLNEREKQILSKAHRVNRNANNLKFIVGNEMFSIIKIRISLLVLDLMLILFRCYNIYRDFQIIWFGSERLLPYSYFHQITELQSNSELDQFLMERKNINTRLDSNDSKKSFVISSLDRLKFFKNNYYITLLTIWIRSLFNLQIKQFPNENVDRLQKKIFSLFSVYSKRRKHQLEVEFKLSLNNQKIQFKSYKHYQKYQQNYQSHEFCTILRIFSNSKNNGILKMKMQSEFLFIPLQIVEECLKNENVSNNVNRFQQQHCYVTNSSVRIHPDSLTSGRRQNKIELFIILQIRDFLLIFTSAFLISLLSMNLLQLIFNSKNHLLEKRISGVKILHFQSFLSNEPPTPPCNITSSSYPILRSSNSDDNDLYFNIDSRSPMKYLLIRLNDNRETDI 707
BLAST of SMED30016666 vs. Planmine SMEST
Match: SMESG000016698.1 (SMESG000016698.1) HSP 1 Score: 637.106 bits (1642), Expect = 0.000e+0 Identity = 306/307 (99.67%), Postives = 306/307 (99.67%), Query Frame = 3 Query: 111 KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRCASHFKSIDSYDYENCCQFIAQCLLQPSCIDYYSPTCYYVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQVKIKVSIPHWMKLEFHLSENVTRPNIKGKLTTTPVYTYESTLMKMQHRFRINEYFQDAILHFKSNKFHLYKLKERFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLKLEKNNFQAFNYYVNNIDQSHDINIAFPEK 1031 KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRCASHFKSIDSYDYENCCQFIAQCLLQPSCIDYYSPTCYYVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQVKIKVSIPHWMKLEFHLSENVTRPNIKGKLTTTPVYTYESTLMKMQHRFRINEYFQDAILHFKSNKFHLYKLKERFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLKLEKNNFQAFNYYVNNIDQSHDINIAFP K Sbjct: 223 KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRCASHFKSIDSYDYENCCQFIAQCLLQPSCIDYYSPTCYYVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQVKIKVSIPHWMKLEFHLSENVTRPNIKGKLTTTPVYTYESTLMKMQHRFRINEYFQDAILHFKSNKFHLYKLKERFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLKLEKNNFQAFNYYVNNIDQSHDINIAFPGK 529
BLAST of SMED30016666 vs. Planmine SMEST
Match: SMESG000077687.1 (SMESG000077687.1) HSP 1 Score: 122.094 bits (305), Expect = 1.514e-27 Identity = 122/426 (28.64%), Postives = 195/426 (45.77%), Query Frame = 3 Query: 111 KATYLPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRCASHFKSIDSYDYENCCQFIAQCLLQPSCIDYYSPTCY--YVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQVKIKVSIPHWMKLEFHLSENVTRPNIKGKLTTTPVYTYESTLMKMQ-HRF--------------RINEYFQDAILHF-KSNKFHLYKLKERFSETKPIIK--KHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLK----LEKNNFQAFNYYVNNIDQSHDINIAFPEKSSILKSAICXXXXXXXXXXXXXXKINFALKSQFNW--TWFLEIKGEVESSYEYLNVKLLEKSKSKIVFNKDILIVELPVSEKNVFSVNHNLQFFP 1310 KA+ LP + + FYCTQNS +N+IF+ +I EKI + C ++ K C+ C R S S ++CC+ +C SC+ +Y+ CY +D + H N+C+KG T +FTL P+F F N+SF+CH+ KI S P M + F+L N K T+ P+ E L K H+F Y + H KS + LYK+K++ TK +K KH KY + Q PF NS NW+ SC + ++ Y Q LY + +K+L + + AF Y +++ + + K SI++S +CS +F W W + +G V ++NVK+++ + ++F++D I+ + N F ++ N Q P Sbjct: 648 KASLLPFERNGFYCTQNSEFVNNIFNHQIDEKISVSQKSICDVYYKKCKTCLRSSVKVCQNS--SKKSKSCCE--TKCYRNLSCMAFYTSKCYDGKLDKSLHAENICLKGDTLKFTLLPKFDFENESFLCHLK----------KIDDSKPR-MTISFNLH---IIDNDKPLWTSKPI-VQEIMLDKFSGHKFIDFISLNWTNFIDSEKEMYLKGFQEHGTKSISYRLYKMKKKKDFTKGPMKVYKHQNSKYLQFQNWQPFYFNSENWYNFSCRLSTKNFYPIQDLY-LPDYQRVKVLSKNHDSKGESKSAFKYTIDSFHNPSQVKVELLNK-SIIRSFVCSEKSGKLIIPTGNFDSHFLQLISVRWPTVWKIYFEGTVSDIPTFINVKIIDITSQSVLFHQD-QIIHKSYYDTNQFFISENFQEKP 1051
BLAST of SMED30016666 vs. Planmine SMEST
Match: SMESG000010387.1 (SMESG000010387.1) HSP 1 Score: 119.013 bits (297), Expect = 1.005e-26 Identity = 89/321 (27.73%), Postives = 151/321 (47.04%), Query Frame = 3 Query: 123 LPQDTDKFYCTQNSPILNSIFHEKITEKIELQSFGECQLHRKNCEKCFRPRCASHFKSIDSYDYENCCQFIAQCLLQPSCIDYYSPTCY--YVDLAEHQHNLCIKGSTYQFTLNPQFSFNNKSFMCHMSLEKEKIIYQVKIKVSIPHWMKLEFHLSENVTRPNIKGKLTTTPVYTYESTLMKMQHRFRINEYFQDAILHFKSNKFHLYKLKE--RFSETKPIIKKHHQIKYTKIQASYPFAVNSRNWHKRSCYTNIEDLYENQLLYNESENISIKLLKLEKNNF----QAFNY-YVNNIDQSHDINIAFPEKSSILKSAIC 1058 L + + YC++NSP+L +F E + E S +C+ R C C +C ++ CCQ + CLLQ SC+ YY+ +CY Y + + + CIKG TY+FTL P+F FN F C+ L+KE + +V + + + K + L + + G+ + V + + +++ + + + I K + +Y LK +F ++KP I K Y K+Q PF N+ W C NI +Y+ Q ++ S + I+L+K +K F+Y ++ ++ I EKSS+L C Sbjct: 190 LDESLNSLYCSENSPLLTELFGETVEEIETFVSRPKCESARARCTDCQIFKCKTN----------KCCQLKSNCLLQDSCLTYYNTSCYRSYEEALYNNKSRCIKGKTYKFTLIPEFDFNTDKFQCY--LKKENLRPKVSVTLDFIN-RKSKLKLQKRSVK--FGGRFPDSNVLQFNN--LQLVFHPSLIDSMDEVIFGKKGFEHFIYPLKPVLKFDQSKPKIHKLFSKSYIKVQMYRPFLHNTETWSNEKCQVNISGIYKEQEIFEPSSKMPIELVKKQKMAVTKTKTVFSYQFLPKGLETQKILFQISEKSSLLSLYFC 493 The following BLAST results are available for this feature:
BLAST of SMED30016666 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30016666 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30016666 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30016666 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30016666 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30016666 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30016666 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30016666 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30016666 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30016666 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30016666 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30016666 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30016666 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30016666 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30016666 ID=SMED30016666|Name=SMED30016666|organism=Schmidtea mediterranea sexual|type=transcript|length=3624bpback to top protein sequence of SMED30016666-orf-1 >SMED30016666-orf-1 ID=SMED30016666-orf-1|Name=SMED30016666-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1007bp MCHMSLEKEKIIYQVKIKVSIPHWMKLEFHLSENVTRPNIKGKLTTTPVYback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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