SMED30016583

Overview
NameSMED30016583
Smed IDSMED30016583
Length (bp)11455
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30016583 (SMED30016583) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30016583 (SMED30016583) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30016583 (SMED30016583) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30016583 (SMED30016583) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30016583

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30016583h1SMcG0015159 dd_Smed_v4_13527_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30016583h1SMcG0015159 dd_Smed_v4_13527_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30016583h1SMcG0015159 dd_Smed_v4_13527_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30016583h1SMcG0015159 dd_Smed_v4_13527_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30016583h1SMcG0015159 dd_Smed_v4_13527_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
anterior sideSMED30016583h1SMcG0015159 dd_Smed_v4_13527_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30016583h1SMcG0015159 dd_Smed_v4_29455_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30016583 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000550:49434..89239 +56988
Homology
BLAST of SMED30016583 vs. Planmine SMEST
Match: SMESG000020949.1 (SMESG000020949.1)

HSP 1 Score: 7307.99 bits (18960), Expect = 0.000e+0
Identity = 3741/3741 (100.00%), Postives = 3741/3741 (100.00%), Query Frame = 3
Query:  156 MKQIIEIIKDGFISENSLIEINLKLDQFNADLQDVENNDECLLMRRKLIENIVRNNIKMTEINDDELCKENAFLYAIERTSNHLKEEIDCLENDIENISNASHKEFKSYPSDAVKDLIKATESSYSMTLSAIHELTSSMMELPESGKLQDKLTEIKDKNIICLTKLLELHDSTSSLTIANSSNDKFDEQETQEKLNVLKNTFEMNSSGWMDNLEDFLILLERFSYIASDNDSANKPXXXXXXXXXXXXLMGKINSRLDYLIKFIRKNINLNYEDELSLLHQALSQLESNAIDIDKETCGNVNILNMKLKELEGLIQNKDFSSFSSINLIHSEIENNSIFNSTSETFFVETLEHLKNRSDLISVKSSLIEKEILNSILSPDEFLSKEYIENIEMPENEKLNQYHELIQVFQCFIEALKLNIMKSPPVETDNFIHIECEIKIMKNVMIVVMTSISMLENYSRSIFTIESKENDPFTQTMKSEALSLVNEAIEKILDNEKSIKISNIFLEDVEPIIXXXXXXXXXXXTNTAWNVEQYKSLLHKSSWLVNIWQYNSKPVQCSTLSERFQRLITILNSVKKEQYKHLAMTHFHEETTREYWFQILQDWQSRVDTFLANNLSATSDNWTLFSWRMHLICEFEQIDSNIDHYGVNFESDFLDFLHSQKSDLDKINKIFINQLLDKKEPIYKYLQFVSKEIKNLNENQRTDHTIMESLKLVQRSLQTGMQILEYIHSILDQIDENYVEKSQIINDQIRKLRLALHSSKKSFMILSNQIGRLNDELDEMGVSLDRVDESVESIETLMKSEINTLLARGYNEMLNRCEITMKQIKTDIKNVENQLLPYESDKLKSVKEAGNLIKIRVCKIQLKIPKIEQEINDFKVTITSIIDQQNETFPLKNDLEIYLTKIDVYFTGIDMGSITSKESAENYLQHIDQLFAEMESQEETIKRIEIVNYRILENNSQIKVLKPIFDSEVSQLINSFKSVNQLKQVKIDLTEKNKVLCEIDKKFKFCITEIDKTKRLILSESGNTNSRISQNIETVRDLIGQSHLYLHQVVSVIDRDHMTALAKDFEQMDALLDLYDELIKYRKNKEIKKQSFVKSIHDKNERTQRDLIEFNKKLTEIGSDWNRSMNGSDFLYKIEEMLNYLVKMKNKVLNSAIDICTYELTDSKMPVLCQECYTSAVSSINWLLSIITNLLVYKFSLSGEFNEFFCQTCKRWSLLIRNCMEFDGDKFEFHDKLVYIETIQMILDCFVVVSEQRNKLALSAQSIQEMASFRIQASELISSVKMILESSKKLDTKMLDFQILRTTISTCSDKLNFHLILVESLSEDCGVQKHIQMKQQSNFYRAYIKYHHNLYRLFNQIIESILDENVLGFEIEDGIQISLEEMTTSIETINKKHQNALRDIDSSLAEWRKSLQTEISTRRFMNFLHSVLKELNDEGLLNRVHYHMYIEKLSLLIKHLKDKEFQWSNLKIQIGSSSDQAYLQQRIKITQACVSVSQSIVARNSIRSKSLLFLYQELCTEAENIKLNLLTLLNDSHYFYLENELTFGERKQFLTQFKNSLNQTEMTVEIWKMRSYKIYPELINSYCSKIDLKSQSLEQWFGLCLNTMEEISANLNNYESKYNALQIKLHVIGEHLEQIENCDDFLRKILAKFYQYNLADFRNCLKLSEIIIKQMNDIEFQLQQLHNLKEQLYQLILGQNGNCHECDKGKLTDFQQVVELISNSQATIRDELLNIVNQESKRTVKSTLTYSCCEDEIECYDKQISVSGEIESFQFIFSNEISKTNXXXXXXXXXXXXXIAEQIEKRVSNLEDLFKQVISSIDDQEAYLNDKWTNQAFDNPKISRLYCDNKTELKDENLFSCSTPLKSPLKHTDMHHWFPNTSEAAIQTINDLDIESDLANMISPISSESSVTCPNYHLSGLTSSEEIKKSNSDLVIIARERSEETANIMETVQEIVEPRILELSENGSSLSIECINHSDLVPHVQAINEDEKYENVDVIVDNVSTGVLEICIQREEVGKSNIKSNECNAFTSENDSRDKLYKIGNDQVDPNEIDKQNMKNKQPLTIDVLHSILHDIVDNVIKDDLPESDTIFLPTNPXXXXXXXXXXXXXXVLAMERETPTLNGNSEHSALLGIESSTNPCNPFQDRYQDQTENQKTIEDAIYIEVSQVTEEEIEKHEKSPKLENSEDDETDKSNAKENLYDIELENVNKIYPISGDSNENESELPLIHQFXXXXXXXXXXXXXXCKIQSNNDLIVPSVEALYIDRGKGNLFDINNEKDFSIPDEGFNKQHDTPAQGDSLTEVSSENSINESFAKLNADLNDDEKLPEMKTDWNVEVQIEPDCDVFSSVKRENTSYEDPSIVRVSETAEDIQSNENELKSNINSCTIKEIEMKESLVISTPFTIENTNMNVKDDYRPVQNKSKNSDREIFYRKHPNSNKFTKLGSDSQRKDHQNEGNSTPVLNAIEMEPSNSEMNNKCSSKSLMTETAKLCIPNISDDKYVEDIESINALSQFSALETFKHSFNDILINEIDKEIDSETRKCRENEVEKLDCNIHNEAPNKDSKLSEKSSFTSLNVENLNEIEIDYNPSDPGETGGQSEISVHPNDAEMFHSTNDNRNMRVNVNIVDENPQPLSEIRTFNVDSFHDTVEQYNGSKIACVSKTESYSSQTDVTESLDSRNSKHFTLDSKIGDSVQITIESEGQIYPEHLLAKAINYEYPVSSDVHKQSTIMENKSTAETLMNTENYLDQVENIECFTHLPTNSQDVIQFSLPESLELTNTLPGKGYGIFNQNDLNDTPDEFEIENDDKLQIHSFNDNKIDLENEISELTSLQVNPAGTSESFKELNSQVKDSDNEEPLWGKSSSRSESEILPEAILACKNHKXXXXXXXXXXNDLACKSEIKKLEGGNEISVRNILLDHEKTGENFHMTNDEEFECEEIPFRKTDTDQRAETDELNSGLTQEPNDITKLVIKKRDQDISSINDDLVDPRLSTTCENSAGPCTSLSDVKESDVDKERVNSSQQISIFEKTNLCESEPESIGKLENNEIGQSFSTFNSMNSENEMLRKILNTKYDLLVDLSDKSDRCNVNNTSQNSLETYENSLEANYGIHSTSMVNDNSLARGSIVNSTVEFVGSVALLKENDDFIVPDDNANCAHLLSENNGKSKLHFIDGEEHISGDLVRWKVXXXXXXXXXXXSRDEAVSESNGNDINSTNISQSNKNKVSDILKTFPDTELENMESNIGSVENRFKEENXXXXXXXXXXXXXXXXXXXFPSTDERAESNTKVHGQLENVNTFTYNTPMENITDLGRDQNKSNKPQIQRDEIVYDEDHFNEDVIENDKILRESLIDNSKFPCDIEMPSKSSEKSIENDTEKLSESQISDPNVALGSIKSDKMNFQSGEDDYMPNPTTTVSQLNDISPDLSTEFESNLNIIRSNINQEEEPHNFENELDLSKAFDSSVNEDSYENEMSERNTDSYFNIENETNSSLPCIKQDGDLPDNYELQFPKEHVLIVSTDNENHIPRENEEVRETLRYKSELRNYVNVDQLQPQSDPVIFSSGNENDGYNNFDESESRKGQAILTRSTIQRTSLTILPKIDKPVLKKRLSKSLELYSHSLDFNDHSLSNSTSQEMVSFSLKSEEEPRPSFPEQSAKYEKSNKRDLNIGDERDLSGNVAKYEYVHNLSKPSENSPQRCDCGLWKXXXXXXXXXXXXVSFCISHIPISRHCNSFYYNILYNMNPFHIKRFVPV 11378
            MKQIIEIIKDGFISENSLIEINLKLDQFNADLQDVENNDECLLMRRKLIENIVRNNIKMTEINDDELCKENAFLYAIERTSNHLKEEIDCLENDIENISNASHKEFKSYPSDAVKDLIKATESSYSMTLSAIHELTSSMMELPESGKLQDKLTEIKDKNIICLTKLLELHDSTSSLTIANSSNDKFDEQETQEKLNVLKNTFEMNSSGWMDNLEDFLILLERFSYIASDNDSANKPVSTNVSSFSSTTLMGKINSRLDYLIKFIRKNINLNYEDELSLLHQALSQLESNAIDIDKETCGNVNILNMKLKELEGLIQNKDFSSFSSINLIHSEIENNSIFNSTSETFFVETLEHLKNRSDLISVKSSLIEKEILNSILSPDEFLSKEYIENIEMPENEKLNQYHELIQVFQCFIEALKLNIMKSPPVETDNFIHIECEIKIMKNVMIVVMTSISMLENYSRSIFTIESKENDPFTQTMKSEALSLVNEAIEKILDNEKSIKISNIFLEDVEPIIKLLEKELEELLTNTAWNVEQYKSLLHKSSWLVNIWQYNSKPVQCSTLSERFQRLITILNSVKKEQYKHLAMTHFHEETTREYWFQILQDWQSRVDTFLANNLSATSDNWTLFSWRMHLICEFEQIDSNIDHYGVNFESDFLDFLHSQKSDLDKINKIFINQLLDKKEPIYKYLQFVSKEIKNLNENQRTDHTIMESLKLVQRSLQTGMQILEYIHSILDQIDENYVEKSQIINDQIRKLRLALHSSKKSFMILSNQIGRLNDELDEMGVSLDRVDESVESIETLMKSEINTLLARGYNEMLNRCEITMKQIKTDIKNVENQLLPYESDKLKSVKEAGNLIKIRVCKIQLKIPKIEQEINDFKVTITSIIDQQNETFPLKNDLEIYLTKIDVYFTGIDMGSITSKESAENYLQHIDQLFAEMESQEETIKRIEIVNYRILENNSQIKVLKPIFDSEVSQLINSFKSVNQLKQVKIDLTEKNKVLCEIDKKFKFCITEIDKTKRLILSESGNTNSRISQNIETVRDLIGQSHLYLHQVVSVIDRDHMTALAKDFEQMDALLDLYDELIKYRKNKEIKKQSFVKSIHDKNERTQRDLIEFNKKLTEIGSDWNRSMNGSDFLYKIEEMLNYLVKMKNKVLNSAIDICTYELTDSKMPVLCQECYTSAVSSINWLLSIITNLLVYKFSLSGEFNEFFCQTCKRWSLLIRNCMEFDGDKFEFHDKLVYIETIQMILDCFVVVSEQRNKLALSAQSIQEMASFRIQASELISSVKMILESSKKLDTKMLDFQILRTTISTCSDKLNFHLILVESLSEDCGVQKHIQMKQQSNFYRAYIKYHHNLYRLFNQIIESILDENVLGFEIEDGIQISLEEMTTSIETINKKHQNALRDIDSSLAEWRKSLQTEISTRRFMNFLHSVLKELNDEGLLNRVHYHMYIEKLSLLIKHLKDKEFQWSNLKIQIGSSSDQAYLQQRIKITQACVSVSQSIVARNSIRSKSLLFLYQELCTEAENIKLNLLTLLNDSHYFYLENELTFGERKQFLTQFKNSLNQTEMTVEIWKMRSYKIYPELINSYCSKIDLKSQSLEQWFGLCLNTMEEISANLNNYESKYNALQIKLHVIGEHLEQIENCDDFLRKILAKFYQYNLADFRNCLKLSEIIIKQMNDIEFQLQQLHNLKEQLYQLILGQNGNCHECDKGKLTDFQQVVELISNSQATIRDELLNIVNQESKRTVKSTLTYSCCEDEIECYDKQISVSGEIESFQFIFSNEISKTNSSDSPKLKLPPSSIAEQIEKRVSNLEDLFKQVISSIDDQEAYLNDKWTNQAFDNPKISRLYCDNKTELKDENLFSCSTPLKSPLKHTDMHHWFPNTSEAAIQTINDLDIESDLANMISPISSESSVTCPNYHLSGLTSSEEIKKSNSDLVIIARERSEETANIMETVQEIVEPRILELSENGSSLSIECINHSDLVPHVQAINEDEKYENVDVIVDNVSTGVLEICIQREEVGKSNIKSNECNAFTSENDSRDKLYKIGNDQVDPNEIDKQNMKNKQPLTIDVLHSILHDIVDNVIKDDLPESDTIFLPTNPILIEETKENININEVLAMERETPTLNGNSEHSALLGIESSTNPCNPFQDRYQDQTENQKTIEDAIYIEVSQVTEEEIEKHEKSPKLENSEDDETDKSNAKENLYDIELENVNKIYPISGDSNENESELPLIHQFNANNENRNSSINIICKIQSNNDLIVPSVEALYIDRGKGNLFDINNEKDFSIPDEGFNKQHDTPAQGDSLTEVSSENSINESFAKLNADLNDDEKLPEMKTDWNVEVQIEPDCDVFSSVKRENTSYEDPSIVRVSETAEDIQSNENELKSNINSCTIKEIEMKESLVISTPFTIENTNMNVKDDYRPVQNKSKNSDREIFYRKHPNSNKFTKLGSDSQRKDHQNEGNSTPVLNAIEMEPSNSEMNNKCSSKSLMTETAKLCIPNISDDKYVEDIESINALSQFSALETFKHSFNDILINEIDKEIDSETRKCRENEVEKLDCNIHNEAPNKDSKLSEKSSFTSLNVENLNEIEIDYNPSDPGETGGQSEISVHPNDAEMFHSTNDNRNMRVNVNIVDENPQPLSEIRTFNVDSFHDTVEQYNGSKIACVSKTESYSSQTDVTESLDSRNSKHFTLDSKIGDSVQITIESEGQIYPEHLLAKAINYEYPVSSDVHKQSTIMENKSTAETLMNTENYLDQVENIECFTHLPTNSQDVIQFSLPESLELTNTLPGKGYGIFNQNDLNDTPDEFEIENDDKLQIHSFNDNKIDLENEISELTSLQVNPAGTSESFKELNSQVKDSDNEEPLWGKSSSRSESEILPEAILACKNHKEQEEIDIIIINDLACKSEIKKLEGGNEISVRNILLDHEKTGENFHMTNDEEFECEEIPFRKTDTDQRAETDELNSGLTQEPNDITKLVIKKRDQDISSINDDLVDPRLSTTCENSAGPCTSLSDVKESDVDKERVNSSQQISIFEKTNLCESEPESIGKLENNEIGQSFSTFNSMNSENEMLRKILNTKYDLLVDLSDKSDRCNVNNTSQNSLETYENSLEANYGIHSTSMVNDNSLARGSIVNSTVEFVGSVALLKENDDFIVPDDNANCAHLLSENNGKSKLHFIDGEEHISGDLVRWKVLTNLDNTDNLNSRDEAVSESNGNDINSTNISQSNKNKVSDILKTFPDTELENMESNIGSVENRFKEENIKEIDLSKDKKLSKPLSEPFPSTDERAESNTKVHGQLENVNTFTYNTPMENITDLGRDQNKSNKPQIQRDEIVYDEDHFNEDVIENDKILRESLIDNSKFPCDIEMPSKSSEKSIENDTEKLSESQISDPNVALGSIKSDKMNFQSGEDDYMPNPTTTVSQLNDISPDLSTEFESNLNIIRSNINQEEEPHNFENELDLSKAFDSSVNEDSYENEMSERNTDSYFNIENETNSSLPCIKQDGDLPDNYELQFPKEHVLIVSTDNENHIPRENEEVRETLRYKSELRNYVNVDQLQPQSDPVIFSSGNENDGYNNFDESESRKGQAILTRSTIQRTSLTILPKIDKPVLKKRLSKSLELYSHSLDFNDHSLSNSTSQEMVSFSLKSEEEPRPSFPEQSAKYEKSNKRDLNIGDERDLSGNVAKYEYVHNLSKPSENSPQRCDCGLWKFILLGLLFILLIVSFCISHIPISRHCNSFYYNILYNMNPFHIKRFVPV
Sbjct:    1 MKQIIEIIKDGFISENSLIEINLKLDQFNADLQDVENNDECLLMRRKLIENIVRNNIKMTEINDDELCKENAFLYAIERTSNHLKEEIDCLENDIENISNASHKEFKSYPSDAVKDLIKATESSYSMTLSAIHELTSSMMELPESGKLQDKLTEIKDKNIICLTKLLELHDSTSSLTIANSSNDKFDEQETQEKLNVLKNTFEMNSSGWMDNLEDFLILLERFSYIASDNDSANKPVSTNVSSFSSTTLMGKINSRLDYLIKFIRKNINLNYEDELSLLHQALSQLESNAIDIDKETCGNVNILNMKLKELEGLIQNKDFSSFSSINLIHSEIENNSIFNSTSETFFVETLEHLKNRSDLISVKSSLIEKEILNSILSPDEFLSKEYIENIEMPENEKLNQYHELIQVFQCFIEALKLNIMKSPPVETDNFIHIECEIKIMKNVMIVVMTSISMLENYSRSIFTIESKENDPFTQTMKSEALSLVNEAIEKILDNEKSIKISNIFLEDVEPIIKLLEKELEELLTNTAWNVEQYKSLLHKSSWLVNIWQYNSKPVQCSTLSERFQRLITILNSVKKEQYKHLAMTHFHEETTREYWFQILQDWQSRVDTFLANNLSATSDNWTLFSWRMHLICEFEQIDSNIDHYGVNFESDFLDFLHSQKSDLDKINKIFINQLLDKKEPIYKYLQFVSKEIKNLNENQRTDHTIMESLKLVQRSLQTGMQILEYIHSILDQIDENYVEKSQIINDQIRKLRLALHSSKKSFMILSNQIGRLNDELDEMGVSLDRVDESVESIETLMKSEINTLLARGYNEMLNRCEITMKQIKTDIKNVENQLLPYESDKLKSVKEAGNLIKIRVCKIQLKIPKIEQEINDFKVTITSIIDQQNETFPLKNDLEIYLTKIDVYFTGIDMGSITSKESAENYLQHIDQLFAEMESQEETIKRIEIVNYRILENNSQIKVLKPIFDSEVSQLINSFKSVNQLKQVKIDLTEKNKVLCEIDKKFKFCITEIDKTKRLILSESGNTNSRISQNIETVRDLIGQSHLYLHQVVSVIDRDHMTALAKDFEQMDALLDLYDELIKYRKNKEIKKQSFVKSIHDKNERTQRDLIEFNKKLTEIGSDWNRSMNGSDFLYKIEEMLNYLVKMKNKVLNSAIDICTYELTDSKMPVLCQECYTSAVSSINWLLSIITNLLVYKFSLSGEFNEFFCQTCKRWSLLIRNCMEFDGDKFEFHDKLVYIETIQMILDCFVVVSEQRNKLALSAQSIQEMASFRIQASELISSVKMILESSKKLDTKMLDFQILRTTISTCSDKLNFHLILVESLSEDCGVQKHIQMKQQSNFYRAYIKYHHNLYRLFNQIIESILDENVLGFEIEDGIQISLEEMTTSIETINKKHQNALRDIDSSLAEWRKSLQTEISTRRFMNFLHSVLKELNDEGLLNRVHYHMYIEKLSLLIKHLKDKEFQWSNLKIQIGSSSDQAYLQQRIKITQACVSVSQSIVARNSIRSKSLLFLYQELCTEAENIKLNLLTLLNDSHYFYLENELTFGERKQFLTQFKNSLNQTEMTVEIWKMRSYKIYPELINSYCSKIDLKSQSLEQWFGLCLNTMEEISANLNNYESKYNALQIKLHVIGEHLEQIENCDDFLRKILAKFYQYNLADFRNCLKLSEIIIKQMNDIEFQLQQLHNLKEQLYQLILGQNGNCHECDKGKLTDFQQVVELISNSQATIRDELLNIVNQESKRTVKSTLTYSCCEDEIECYDKQISVSGEIESFQFIFSNEISKTNSSDSPKLKLPPSSIAEQIEKRVSNLEDLFKQVISSIDDQEAYLNDKWTNQAFDNPKISRLYCDNKTELKDENLFSCSTPLKSPLKHTDMHHWFPNTSEAAIQTINDLDIESDLANMISPISSESSVTCPNYHLSGLTSSEEIKKSNSDLVIIARERSEETANIMETVQEIVEPRILELSENGSSLSIECINHSDLVPHVQAINEDEKYENVDVIVDNVSTGVLEICIQREEVGKSNIKSNECNAFTSENDSRDKLYKIGNDQVDPNEIDKQNMKNKQPLTIDVLHSILHDIVDNVIKDDLPESDTIFLPTNPILIEETKENININEVLAMERETPTLNGNSEHSALLGIESSTNPCNPFQDRYQDQTENQKTIEDAIYIEVSQVTEEEIEKHEKSPKLENSEDDETDKSNAKENLYDIELENVNKIYPISGDSNENESELPLIHQFNANNENRNSSINIICKIQSNNDLIVPSVEALYIDRGKGNLFDINNEKDFSIPDEGFNKQHDTPAQGDSLTEVSSENSINESFAKLNADLNDDEKLPEMKTDWNVEVQIEPDCDVFSSVKRENTSYEDPSIVRVSETAEDIQSNENELKSNINSCTIKEIEMKESLVISTPFTIENTNMNVKDDYRPVQNKSKNSDREIFYRKHPNSNKFTKLGSDSQRKDHQNEGNSTPVLNAIEMEPSNSEMNNKCSSKSLMTETAKLCIPNISDDKYVEDIESINALSQFSALETFKHSFNDILINEIDKEIDSETRKCRENEVEKLDCNIHNEAPNKDSKLSEKSSFTSLNVENLNEIEIDYNPSDPGETGGQSEISVHPNDAEMFHSTNDNRNMRVNVNIVDENPQPLSEIRTFNVDSFHDTVEQYNGSKIACVSKTESYSSQTDVTESLDSRNSKHFTLDSKIGDSVQITIESEGQIYPEHLLAKAINYEYPVSSDVHKQSTIMENKSTAETLMNTENYLDQVENIECFTHLPTNSQDVIQFSLPESLELTNTLPGKGYGIFNQNDLNDTPDEFEIENDDKLQIHSFNDNKIDLENEISELTSLQVNPAGTSESFKELNSQVKDSDNEEPLWGKSSSRSESEILPEAILACKNHKEQEEIDIIIINDLACKSEIKKLEGGNEISVRNILLDHEKTGENFHMTNDEEFECEEIPFRKTDTDQRAETDELNSGLTQEPNDITKLVIKKRDQDISSINDDLVDPRLSTTCENSAGPCTSLSDVKESDVDKERVNSSQQISIFEKTNLCESEPESIGKLENNEIGQSFSTFNSMNSENEMLRKILNTKYDLLVDLSDKSDRCNVNNTSQNSLETYENSLEANYGIHSTSMVNDNSLARGSIVNSTVEFVGSVALLKENDDFIVPDDNANCAHLLSENNGKSKLHFIDGEEHISGDLVRWKVLTNLDNTDNLNSRDEAVSESNGNDINSTNISQSNKNKVSDILKTFPDTELENMESNIGSVENRFKEENIKEIDLSKDKKLSKPLSEPFPSTDERAESNTKVHGQLENVNTFTYNTPMENITDLGRDQNKSNKPQIQRDEIVYDEDHFNEDVIENDKILRESLIDNSKFPCDIEMPSKSSEKSIENDTEKLSESQISDPNVALGSIKSDKMNFQSGEDDYMPNPTTTVSQLNDISPDLSTEFESNLNIIRSNINQEEEPHNFENELDLSKAFDSSVNEDSYENEMSERNTDSYFNIENETNSSLPCIKQDGDLPDNYELQFPKEHVLIVSTDNENHIPRENEEVRETLRYKSELRNYVNVDQLQPQSDPVIFSSGNENDGYNNFDESESRKGQAILTRSTIQRTSLTILPKIDKPVLKKRLSKSLELYSHSLDFNDHSLSNSTSQEMVSFSLKSEEEPRPSFPEQSAKYEKSNKRDLNIGDERDLSGNVAKYEYVHNLSKPSENSPQRCDCGLWKFILLGLLFILLIVSFCISHIPISRHCNSFYYNILYNMNPFHIKRFVPV 3741          
The following BLAST results are available for this feature:
BLAST of SMED30016583 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016583 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016583 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016583 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016583 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016583 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016583 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016583 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016583 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016583 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016583 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016583 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016583 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016583 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000020949.10.000e+0100.00SMESG000020949.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30016583 ID=SMED30016583|Name=SMED30016583|organism=Schmidtea mediterranea sexual|type=transcript|length=11455bp
GTATTTATTATAATCAGATCAGTGAATTTATCGAAATTGATCCTTCAAAT
ATTTCGATTTTCATTATTTTTTAATTACATTTATTTCTCATTGATTTCTG
AACTACAAATCGAATCCGAAAAATGTCAACAAAATATGCGAATCTCGAGA
ATACAATGAAGCAAATCATAGAAATTATCAAAGATGGATTTATTTCTGAA
AATTCTCTTATCGAGATCAATCTAAAACTGGATCAGTTCAATGCCGACTT
ACAGGATGTGGAAAATAATGATGAATGCCTACTAATGAGAAGGAAACTGA
TTGAGAATATTGTGAGAAATAATATCAAAATGACAGAGATTAATGACGAT
GAGCTGTGCAAAGAAAACGCTTTTCTTTATGCAATTGAAAGGACTTCTAA
TCACCTTAAAGAAGAGATTGATTGTTTAGAGAACGACATAGAAAATATTT
CCAATGCCTCTCATAAAGAATTTAAATCTTATCCCTCAGATGCTGTAAAA
GATCTCATAAAAGCGACAGAGTCATCATATTCAATGACATTATCAGCCAT
ACATGAGTTAACTTCTTCGATGATGGAGTTGCCAGAATCTGGAAAATTAC
AAGACAAACTTACCGAAATAAAAGACAAAAATATAATTTGCCTAACGAAG
TTACTAGAACTTCATGATTCAACATCTTCCCTAACAATAGCCAATAGTTC
TAATGATAAGTTTGATGAGCAAGAAACCCAAGAGAAATTAAATGTTCTGA
AAAACACATTTGAGATGAACAGTTCCGGTTGGATGGACAACCTTGAAGAT
TTCCTAATTCTGCTGGAACGTTTCAGTTATATTGCGTCGGATAATGATTC
TGCAAATAAGCCCGTGTCAACAAATGTCAGTTCCTTCAGTTCCACAACTC
TCATGGGGAAAATAAATTCCAGGCTCGATTATTTAATAAAATTCATTCGC
AAAAATATCAATCTTAACTATGAAGATGAATTGAGTCTTTTGCATCAAGC
ACTTTCACAGCTTGAATCAAATGCCATTGACATTGACAAAGAAACTTGTG
GTAATGTCAACATCTTGAATATGAAATTAAAGGAATTGGAAGGTCTGATC
CAGAATAAAGACTTTTCAAGTTTTTCTTCAATTAATTTAATTCACAGCGA
AATTGAAAATAATTCCATTTTTAACAGCACCTCAGAAACATTTTTTGTAG
AGACTTTGGAACACTTAAAAAACCGCAGCGATTTGATCTCAGTAAAAAGT
TCTCTCATTGAAAAAGAGATCTTGAATTCCATTTTAAGCCCGGACGAATT
TCTGTCTAAAGAATACATTGAGAATATAGAGATGCCGGAAAATGAAAAAC
TGAACCAATATCATGAATTAATACAAGTGTTCCAGTGCTTCATTGAAGCA
TTAAAATTGAACATTATGAAAAGTCCGCCTGTTGAGACAGATAACTTTAT
CCATATTGAATGTGAAATCAAGATAATGAAGAACGTCATGATTGTCGTGA
TGACTTCAATATCAATGCTAGAGAATTACTCTAGATCGATCTTTACAATA
GAATCAAAGGAAAATGACCCCTTCACACAAACGATGAAATCTGAGGCTCT
TTCCTTGGTAAATGAAGCTATAGAAAAAATATTGGATAATGAAAAATCTA
TAAAGATTTCAAACATTTTCCTGGAGGACGTGGAACCTATAATAAAATTA
CTAGAAAAAGAGTTAGAAGAATTACTAACCAATACCGCATGGAATGTAGA
ACAATACAAATCTTTACTACACAAAAGTTCTTGGCTTGTAAATATCTGGC
AATACAACAGTAAACCAGTCCAATGCTCCACATTGTCTGAAAGATTTCAG
CGTTTGATCACAATACTTAACTCTGTAAAGAAAGAGCAATACAAACATTT
GGCAATGACTCATTTCCACGAAGAAACAACCCGAGAATATTGGTTCCAGA
TACTGCAAGACTGGCAAAGTCGTGTTGATACTTTTCTGGCCAACAACTTA
TCAGCAACAAGTGATAACTGGACGCTCTTCAGTTGGAGAATGCACTTAAT
TTGTGAATTTGAGCAAATCGATTCCAACATCGATCATTATGGAGTGAATT
TCGAATCCGATTTCCTCGATTTCCTCCATTCTCAGAAATCTGACTTGGAC
AAAATCAACAAAATATTTATCAATCAGCTTCTTGATAAAAAAGAGCCGAT
TTATAAATATTTGCAATTCGTATCAAAAGAAATCAAAAATTTAAATGAAA
ACCAAAGAACAGACCATACTATAATGGAATCATTAAAGTTGGTTCAAAGG
TCTCTTCAAACTGGGATGCAGATCCTCGAATATATCCACTCAATATTAGA
TCAAATTGATGAAAATTATGTGGAAAAATCTCAAATTATCAATGATCAGA
TAAGAAAGTTGCGGTTGGCTCTGCATTCTAGTAAAAAATCATTTATGATA
CTCAGCAATCAAATTGGCCGGCTCAATGATGAACTAGATGAAATGGGAGT
GAGTTTGGACAGAGTAGACGAATCCGTTGAGTCTATAGAAACATTAATGA
AATCAGAGATAAATACATTGTTGGCCAGAGGCTATAATGAAATGTTAAAT
AGATGTGAAATAACAATGAAACAGATAAAAACCGACATAAAAAATGTTGA
AAATCAGTTATTACCATATGAATCTGACAAATTGAAATCAGTGAAAGAAG
CGGGAAATTTGATTAAAATTCGAGTGTGCAAAATTCAATTGAAAATTCCA
AAAATCGAACAAGAAATCAATGATTTCAAAGTGACAATAACATCAATTAT
TGATCAGCAAAACGAAACATTCCCACTGAAAAATGATCTGGAAATTTATC
TGACAAAAATCGATGTTTATTTCACTGGAATCGACATGGGGTCCATAACC
AGCAAGGAAAGTGCCGAAAATTATTTACAACATATTGATCAATTATTCGC
TGAAATGGAATCCCAGGAGGAAACCATTAAACGAATCGAAATCGTTAATT
ATCGGATTCTGGAGAATAATTCCCAAATAAAGGTTTTGAAACCCATTTTC
GATAGTGAGGTTTCTCAATTAATCAATTCATTCAAATCAGTAAATCAATT
AAAACAAGTGAAAATTGATTTGACGGAGAAAAATAAAGTTTTGTGTGAAA
TTGATAAAAAATTTAAATTCTGTATCACTGAAATTGATAAAACTAAGCGG
CTGATTCTATCTGAATCCGGGAACACGAACAGTCGAATATCGCAAAACAT
AGAAACGGTCAGAGATCTCATTGGTCAGTCTCACCTTTATTTGCATCAGG
TTGTGAGTGTTATCGACAGAGACCACATGACGGCTCTTGCTAAGGATTTT
GAGCAGATGGATGCCTTACTGGATTTGTATGATGAATTAATAAAATATAG
GAAAAATAAAGAGATTAAAAAGCAAAGTTTTGTAAAATCAATCCATGACA
AAAATGAGAGGACTCAGAGAGATTTAATTGAATTTAACAAAAAGCTTACA
GAAATTGGTAGTGATTGGAACCGAAGCATGAATGGGTCAGATTTTCTATA
TAAAATTGAAGAAATGTTAAACTACCTAGTTAAAATGAAAAATAAAGTCC
TCAACAGTGCTATTGATATTTGCACTTACGAATTAACGGATTCCAAAATG
CCGGTACTTTGCCAAGAGTGCTACACAAGTGCCGTGAGTTCAATTAACTG
GCTTTTATCAATAATAACTAACCTGCTTGTCTATAAATTCTCCCTGTCAG
GAGAATTCAATGAATTTTTCTGTCAAACGTGCAAAAGATGGTCACTATTA
ATCAGGAATTGCATGGAATTTGATGGTGATAAATTCGAATTCCATGACAA
ATTGGTTTACATAGAAACAATTCAAATGATTCTTGATTGTTTTGTGGTTG
TAAGTGAGCAGCGTAATAAATTGGCATTATCAGCACAGTCAATACAGGAA
ATGGCTTCATTTCGGATCCAGGCTTCTGAATTGATTTCCAGTGTCAAAAT
GATTCTCGAATCCAGTAAAAAACTGGACACGAAAATGTTGGATTTTCAGA
TTTTACGGACAACGATATCGACATGTAGTGATAAACTGAATTTCCATTTG
ATATTGGTCGAGTCACTATCTGAAGATTGTGGAGTTCAGAAACATATTCA
AATGAAGCAACAATCAAATTTCTATAGAGCTTATATAAAATATCACCACA
ATTTGTATCGTTTGTTTAACCAGATTATTGAGTCCATTTTGGATGAAAAT
GTTCTAGGGTTTGAAATTGAGGATGGTATCCAAATCAGCTTAGAAGAAAT
GACTACAAGTATTGAAACCATTAATAAAAAGCATCAAAATGCCCTACGGG
ATATTGATAGTTCTCTTGCAGAATGGCGAAAGTCGTTGCAAACCGAAATC
AGTACCAGAAGATTTATGAATTTTCTTCATAGTGTTTTAAAAGAATTAAA
TGATGAAGGTTTACTAAACAGAGTCCATTATCATATGTATATTGAGAAAC
TATCCTTACTCATCAAACATTTGAAAGATAAAGAATTTCAGTGGTCTAAT
TTAAAAATTCAAATTGGTTCAAGTTCCGATCAAGCATATTTGCAGCAACG
AATCAAAATCACTCAAGCATGCGTTTCAGTCAGCCAATCAATAGTTGCGC
GTAACTCGATTCGCAGCAAATCGTTATTATTCCTGTACCAAGAGCTATGT
ACCGAAGCGGAAAACATTAAATTAAATCTTTTGACATTGCTCAATGATTC
TCATTACTTTTATTTGGAGAATGAGTTAACGTTCGGTGAAAGGAAACAGT
TTTTAACTCAGTTCAAAAATTCTTTGAATCAGACTGAGATGACGGTTGAA
ATCTGGAAAATGAGATCATATAAAATCTACCCTGAATTGATCAATTCGTA
TTGTTCAAAGATCGATCTGAAATCACAAAGTCTTGAGCAATGGTTTGGAC
TCTGTTTGAATACAATGGAGGAAATATCAGCGAATCTGAATAACTATGAG
TCAAAGTATAACGCACTGCAAATAAAACTTCATGTTATTGGAGAGCATTT
AGAACAAATTGAAAATTGCGACGATTTCCTTAGGAAAATATTAGCAAAAT
TTTATCAATACAATTTAGCAGATTTCAGAAATTGTCTGAAATTGTCAGAA
ATTATTATTAAACAAATGAATGACATCGAATTTCAATTGCAACAACTCCA
CAATTTGAAGGAACAGCTTTACCAATTGATATTGGGTCAGAACGGTAATT
GCCATGAGTGTGACAAGGGCAAACTCACGGACTTTCAGCAAGTTGTTGAG
CTTATTTCAAACTCCCAAGCTACGATTAGAGACGAATTGCTGAATATTGT
AAACCAGGAATCCAAGAGAACAGTTAAGTCAACATTAACATATTCGTGCT
GTGAAGATGAAATAGAGTGTTACGACAAACAAATTTCCGTGTCCGGAGAA
ATTGAATCTTTCCAATTTATATTTTCTAATGAAATCAGTAAAACCAATTC
GTCTGATTCGCCAAAACTCAAATTGCCGCCTTCTTCCATCGCCGAACAAA
TAGAAAAAAGAGTGAGCAATTTAGAAGATTTGTTTAAACAAGTTATTTCG
TCTATTGACGATCAAGAAGCGTACCTTAATGATAAGTGGACAAACCAAGC
ATTTGACAATCCGAAGATTAGCCGGCTTTATTGCGATAATAAAACGGAAT
TAAAGGATGAAAACTTATTTTCTTGCTCGACTCCGCTAAAGAGTCCATTA
AAACATACCGATATGCATCACTGGTTTCCTAACACATCGGAAGCCGCTAT
TCAAACAATAAATGATTTGGATATTGAATCAGATCTAGCGAATATGATTT
CACCAATATCATCAGAATCATCTGTGACTTGTCCAAATTATCATTTATCC
GGATTGACAAGTTCAGAGGAAATTAAGAAATCAAATTCGGATCTGGTGAT
AATTGCCCGTGAGAGGAGTGAAGAAACAGCAAACATAATGGAAACAGTTC
AAGAAATAGTTGAGCCCAGGATTTTAGAATTGTCAGAAAATGGATCCTCT
TTATCTATTGAATGTATTAATCACAGCGACCTTGTTCCTCATGTTCAAGC
AATAAATGAAGATGAAAAATATGAAAACGTAGATGTGATTGTAGATAATG
TTTCCACTGGAGTGCTAGAGATATGTATTCAACGGGAGGAAGTAGGGAAA
TCTAATATAAAGTCTAATGAATGTAATGCTTTCACAAGTGAGAATGATTC
AAGGGATAAACTTTACAAAATTGGTAATGATCAAGTCGACCCCAATGAAA
TTGATAAACAAAATATGAAAAACAAGCAACCATTAACCATAGATGTTCTA
CATAGCATTTTGCATGATATTGTCGATAATGTAATCAAGGATGATCTTCC
TGAATCTGACACAATTTTCCTACCGACAAATCCAATTTTAATTGAAGAAA
CTAAAGAAAACATAAATATTAATGAAGTCTTAGCTATGGAGCGCGAGACG
CCTACTTTAAACGGTAACAGTGAACATAGCGCATTATTAGGAATTGAATC
GAGCACAAATCCATGTAATCCTTTCCAGGACCGTTATCAAGACCAAACGG
AAAATCAAAAAACCATTGAGGATGCGATATATATAGAAGTCAGTCAAGTC
ACCGAAGAAGAGATAGAGAAACATGAAAAAAGTCCAAAATTAGAGAATTC
CGAAGATGACGAAACTGATAAAAGCAACGCGAAAGAGAATCTTTATGACA
TCGAATTGGAAAATGTTAATAAGATTTATCCCATTTCCGGTGACAGCAAT
GAAAATGAAAGTGAACTGCCGCTAATTCATCAATTCAATGCCAATAATGA
AAATAGAAATTCCTCCATAAATATCATTTGTAAAATTCAATCCAACAATG
ATCTTATTGTTCCAAGCGTTGAAGCATTATATATTGACAGAGGAAAAGGA
AATTTATTTGACATAAACAATGAAAAGGATTTTTCAATTCCCGACGAGGG
ATTTAATAAACAACACGACACCCCAGCTCAAGGAGATTCATTAACTGAAG
TTTCTTCTGAAAATTCCATTAACGAAAGCTTTGCAAAATTGAATGCCGAT
CTAAATGATGACGAAAAATTGCCGGAAATGAAAACCGATTGGAACGTTGA
AGTCCAGATTGAACCCGATTGCGATGTATTCAGTAGTGTTAAACGGGAAA
ATACAAGTTATGAAGATCCGTCCATTGTAAGGGTTTCTGAAACTGCCGAA
GACATTCAAAGTAATGAAAATGAATTAAAAAGCAACATCAACAGTTGTAC
AATTAAAGAAATAGAAATGAAGGAAAGTTTAGTCATATCTACTCCATTTA
CCATAGAGAACACCAATATGAATGTGAAAGACGATTACAGACCAGTACAA
AATAAGAGTAAGAATTCTGATAGAGAGATATTCTATAGAAAACATCCAAA
TTCCAATAAATTTACTAAATTGGGCAGTGATTCCCAAAGGAAAGATCATC
AAAACGAAGGTAATTCAACTCCAGTGTTGAATGCAATTGAAATGGAGCCG
TCCAATAGTGAAATGAACAACAAATGTTCTAGCAAATCACTTATGACAGA
GACTGCCAAATTATGCATCCCGAACATTTCCGATGATAAATACGTTGAAG
ATATTGAAAGTATCAACGCCTTATCTCAGTTCAGTGCTTTGGAGACTTTT
AAACACTCATTTAATGATATTCTTATTAATGAAATTGATAAAGAAATTGA
TAGTGAAACAAGAAAGTGTCGAGAAAATGAAGTGGAAAAATTGGACTGTA
ATATTCATAATGAAGCGCCAAATAAGGACTCAAAGCTTTCAGAAAAGTCC
AGTTTCACTAGTTTAAATGTCGAAAACCTTAATGAAATCGAAATCGATTA
CAATCCGTCAGACCCAGGTGAGACTGGTGGCCAATCTGAAATCTCAGTTC
ATCCCAATGACGCGGAAATGTTTCATTCCACCAATGACAACAGAAATATG
AGAGTCAATGTTAATATTGTTGACGAAAATCCTCAACCATTGTCAGAAAT
ACGCACTTTCAACGTTGACTCCTTTCATGACACAGTTGAACAGTATAACG
GCTCCAAAATAGCTTGTGTTTCAAAAACCGAAAGCTACTCTTCACAAACT
GATGTAACGGAATCTTTAGATTCACGAAATTCCAAACACTTCACATTGGA
TAGCAAAATTGGGGACTCGGTTCAAATAACAATCGAATCCGAAGGGCAAA
TTTATCCTGAGCACCTTTTAGCAAAGGCTATTAATTATGAATATCCGGTA
AGTTCGGATGTCCACAAGCAGTCGACAATAATGGAAAATAAATCCACTGC
TGAAACCTTAATGAATACAGAAAACTATTTAGACCAAGTTGAAAACATTG
AATGTTTTACTCATTTGCCAACAAATAGTCAAGACGTAATCCAATTCAGT
TTACCGGAAAGTCTAGAGCTGACAAATACTTTACCCGGAAAAGGTTATGG
AATATTTAATCAGAACGATTTGAATGATACCCCTGATGAATTCGAAATTG
AAAATGATGACAAATTACAAATACATTCATTCAACGACAATAAGATAGAT
TTAGAAAATGAAATTTCAGAACTAACCTCTTTACAAGTAAACCCCGCTGG
TACTTCTGAAAGCTTTAAGGAATTGAATTCACAAGTAAAAGACTCAGATA
ATGAGGAACCATTATGGGGCAAATCCAGTAGCCGTTCGGAATCAGAAATT
CTGCCTGAAGCAATATTAGCATGCAAAAATCACAAAGAACAAGAAGAAAT
TGATATCATAATAATAAATGATTTAGCATGTAAATCTGAAATTAAAAAAC
TTGAAGGTGGCAATGAAATTTCAGTCCGAAATATCTTATTAGACCATGAA
AAGACTGGCGAAAACTTTCACATGACCAATGATGAGGAATTTGAATGTGA
AGAAATTCCGTTCAGAAAAACTGATACTGATCAAAGAGCAGAGACGGATG
AACTCAATTCGGGTCTCACTCAAGAGCCAAATGACATCACGAAACTGGTA
ATAAAAAAACGAGATCAAGATATTTCTTCCATAAATGATGACCTAGTTGA
TCCAAGACTGTCGACAACATGTGAAAATTCAGCTGGACCCTGCACATCTT
TATCTGATGTCAAGGAAAGTGATGTTGATAAAGAAAGAGTAAATTCTTCT
CAACAAATATCTATATTTGAAAAGACGAATCTATGTGAATCGGAGCCTGA
AAGCATTGGAAAGCTGGAGAATAATGAAATTGGACAATCATTCTCAACAT
TTAATTCAATGAATTCTGAAAATGAAATGTTAAGAAAGATCTTGAACACC
AAATATGATTTACTGGTTGATTTATCGGACAAAAGTGACAGGTGTAATGT
CAATAATACATCACAGAATTCCCTAGAAACCTATGAAAATTCTCTAGAAG
CAAACTATGGAATCCATTCAACCTCCATGGTGAATGATAACAGCTTGGCA
AGAGGTAGCATTGTGAATAGTACGGTCGAATTTGTAGGAAGCGTGGCTTT
ATTAAAGGAAAATGACGATTTCATTGTACCAGATGACAATGCTAATTGTG
CTCATTTGTTATCTGAAAACAATGGAAAATCAAAATTACATTTTATAGAC
GGGGAGGAGCATATTTCAGGAGACTTAGTTAGATGGAAAGTTTTGACAAA
CCTAGATAATACCGATAATTTGAATTCTAGAGATGAAGCCGTCAGTGAAT
CTAATGGAAATGACATTAATTCCACAAATATTAGTCAGTCAAATAAGAAC
AAAGTCAGTGACATATTAAAGACCTTTCCAGATACCGAATTGGAGAACAT
GGAATCCAATATTGGCAGTGTTGAAAATCGGTTTAAGGAGGAAAATATCA
AGGAAATTGATTTAAGTAAAGACAAAAAGTTGTCCAAACCTTTGTCAGAA
CCTTTCCCTTCGACCGATGAAAGAGCTGAAAGTAACACAAAGGTTCATGG
ACAGTTAGAAAACGTCAATACATTTACCTATAACACTCCTATGGAAAACA
TCACAGATCTCGGTCGTGATCAAAATAAAAGTAACAAACCTCAAATTCAA
AGAGACGAAATAGTATACGATGAAGATCATTTCAATGAAGATGTAATTGA
AAATGATAAAATTCTTCGGGAATCTCTCATCGATAATTCTAAATTTCCTT
GTGATATAGAAATGCCCAGTAAAAGTTCTGAAAAGTCTATTGAAAATGAC
ACAGAAAAACTATCAGAGTCACAGATTTCAGATCCCAATGTCGCCTTGGG
TAGTATCAAATCTGATAAAATGAATTTCCAGTCAGGCGAGGATGATTACA
TGCCGAATCCTACTACTACAGTGTCACAATTGAATGACATCTCTCCTGAT
CTCTCAACCGAATTCGAATCGAATTTGAATATTATTCGAAGCAATATCAA
TCAAGAAGAAGAGCCTCACAATTTTGAAAATGAACTCGATTTGTCTAAGG
CCTTTGATTCTTCGGTCAATGAGGATTCTTATGAAAATGAAATGTCTGAA
AGGAATACCGATTCTTATTTCAATATTGAGAATGAAACGAACTCGTCATT
GCCTTGTATAAAGCAGGATGGAGACCTACCGGACAACTACGAACTCCAAT
TCCCGAAAGAGCATGTACTCATTGTTAGTACTGATAATGAAAATCATATT
CCGCGGGAAAATGAAGAAGTCAGAGAAACCCTGCGTTACAAATCAGAGTT
ACGTAACTATGTCAATGTCGACCAATTACAACCGCAATCAGATCCTGTAA
TATTTTCAAGTGGAAATGAAAATGATGGCTATAACAATTTTGACGAATCA
GAATCTAGGAAAGGCCAAGCAATATTAACCAGATCAACGATACAGCGGAC
AAGTCTTACAATTTTACCGAAAATCGACAAACCGGTTTTGAAAAAACGTT
TATCAAAATCTTTAGAACTTTATTCTCACTCTTTAGATTTTAATGACCAT
TCTTTATCAAATTCCACTAGTCAGGAAATGGTGAGCTTTTCCCTTAAATC
GGAAGAAGAACCGCGTCCTTCATTTCCTGAACAGAGTGCAAAATATGAAA
AAAGTAACAAACGCGATTTGAATATTGGTGATGAGAGAGATTTATCGGGA
AATGTGGCCAAATATGAATACGTTCACAATTTGTCCAAGCCGTCTGAAAA
CTCTCCACAAAGATGTGATTGTGGTTTATGGAAATTTATCCTCCTTGGTC
TCCTATTTATACTATTAATCGTATCCTTCTGTATTTCTCACATCCCAATC
TCAAGGCATTGCAATAGCTTTTATTACAATATTTTATACAACATGAATCC
TTTCCACATCAAGCGGTTTGTGCCTGTTTAAAGCAGGCGCCTCTCTACTT
TCAATTCAATTCAATAATCATGTATTTATTAATAATAAATATTTATTGAC
TGCGG
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protein sequence of SMED30016583-orf-1

>SMED30016583-orf-1 ID=SMED30016583-orf-1|Name=SMED30016583-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=3753bp
MSTKYANLENTMKQIIEIIKDGFISENSLIEINLKLDQFNADLQDVENND
ECLLMRRKLIENIVRNNIKMTEINDDELCKENAFLYAIERTSNHLKEEID
CLENDIENISNASHKEFKSYPSDAVKDLIKATESSYSMTLSAIHELTSSM
MELPESGKLQDKLTEIKDKNIICLTKLLELHDSTSSLTIANSSNDKFDEQ
ETQEKLNVLKNTFEMNSSGWMDNLEDFLILLERFSYIASDNDSANKPVST
NVSSFSSTTLMGKINSRLDYLIKFIRKNINLNYEDELSLLHQALSQLESN
AIDIDKETCGNVNILNMKLKELEGLIQNKDFSSFSSINLIHSEIENNSIF
NSTSETFFVETLEHLKNRSDLISVKSSLIEKEILNSILSPDEFLSKEYIE
NIEMPENEKLNQYHELIQVFQCFIEALKLNIMKSPPVETDNFIHIECEIK
IMKNVMIVVMTSISMLENYSRSIFTIESKENDPFTQTMKSEALSLVNEAI
EKILDNEKSIKISNIFLEDVEPIIKLLEKELEELLTNTAWNVEQYKSLLH
KSSWLVNIWQYNSKPVQCSTLSERFQRLITILNSVKKEQYKHLAMTHFHE
ETTREYWFQILQDWQSRVDTFLANNLSATSDNWTLFSWRMHLICEFEQID
SNIDHYGVNFESDFLDFLHSQKSDLDKINKIFINQLLDKKEPIYKYLQFV
SKEIKNLNENQRTDHTIMESLKLVQRSLQTGMQILEYIHSILDQIDENYV
EKSQIINDQIRKLRLALHSSKKSFMILSNQIGRLNDELDEMGVSLDRVDE
SVESIETLMKSEINTLLARGYNEMLNRCEITMKQIKTDIKNVENQLLPYE
SDKLKSVKEAGNLIKIRVCKIQLKIPKIEQEINDFKVTITSIIDQQNETF
PLKNDLEIYLTKIDVYFTGIDMGSITSKESAENYLQHIDQLFAEMESQEE
TIKRIEIVNYRILENNSQIKVLKPIFDSEVSQLINSFKSVNQLKQVKIDL
TEKNKVLCEIDKKFKFCITEIDKTKRLILSESGNTNSRISQNIETVRDLI
GQSHLYLHQVVSVIDRDHMTALAKDFEQMDALLDLYDELIKYRKNKEIKK
QSFVKSIHDKNERTQRDLIEFNKKLTEIGSDWNRSMNGSDFLYKIEEMLN
YLVKMKNKVLNSAIDICTYELTDSKMPVLCQECYTSAVSSINWLLSIITN
LLVYKFSLSGEFNEFFCQTCKRWSLLIRNCMEFDGDKFEFHDKLVYIETI
QMILDCFVVVSEQRNKLALSAQSIQEMASFRIQASELISSVKMILESSKK
LDTKMLDFQILRTTISTCSDKLNFHLILVESLSEDCGVQKHIQMKQQSNF
YRAYIKYHHNLYRLFNQIIESILDENVLGFEIEDGIQISLEEMTTSIETI
NKKHQNALRDIDSSLAEWRKSLQTEISTRRFMNFLHSVLKELNDEGLLNR
VHYHMYIEKLSLLIKHLKDKEFQWSNLKIQIGSSSDQAYLQQRIKITQAC
VSVSQSIVARNSIRSKSLLFLYQELCTEAENIKLNLLTLLNDSHYFYLEN
ELTFGERKQFLTQFKNSLNQTEMTVEIWKMRSYKIYPELINSYCSKIDLK
SQSLEQWFGLCLNTMEEISANLNNYESKYNALQIKLHVIGEHLEQIENCD
DFLRKILAKFYQYNLADFRNCLKLSEIIIKQMNDIEFQLQQLHNLKEQLY
QLILGQNGNCHECDKGKLTDFQQVVELISNSQATIRDELLNIVNQESKRT
VKSTLTYSCCEDEIECYDKQISVSGEIESFQFIFSNEISKTNSSDSPKLK
LPPSSIAEQIEKRVSNLEDLFKQVISSIDDQEAYLNDKWTNQAFDNPKIS
RLYCDNKTELKDENLFSCSTPLKSPLKHTDMHHWFPNTSEAAIQTINDLD
IESDLANMISPISSESSVTCPNYHLSGLTSSEEIKKSNSDLVIIARERSE
ETANIMETVQEIVEPRILELSENGSSLSIECINHSDLVPHVQAINEDEKY
ENVDVIVDNVSTGVLEICIQREEVGKSNIKSNECNAFTSENDSRDKLYKI
GNDQVDPNEIDKQNMKNKQPLTIDVLHSILHDIVDNVIKDDLPESDTIFL
PTNPILIEETKENININEVLAMERETPTLNGNSEHSALLGIESSTNPCNP
FQDRYQDQTENQKTIEDAIYIEVSQVTEEEIEKHEKSPKLENSEDDETDK
SNAKENLYDIELENVNKIYPISGDSNENESELPLIHQFNANNENRNSSIN
IICKIQSNNDLIVPSVEALYIDRGKGNLFDINNEKDFSIPDEGFNKQHDT
PAQGDSLTEVSSENSINESFAKLNADLNDDEKLPEMKTDWNVEVQIEPDC
DVFSSVKRENTSYEDPSIVRVSETAEDIQSNENELKSNINSCTIKEIEMK
ESLVISTPFTIENTNMNVKDDYRPVQNKSKNSDREIFYRKHPNSNKFTKL
GSDSQRKDHQNEGNSTPVLNAIEMEPSNSEMNNKCSSKSLMTETAKLCIP
NISDDKYVEDIESINALSQFSALETFKHSFNDILINEIDKEIDSETRKCR
ENEVEKLDCNIHNEAPNKDSKLSEKSSFTSLNVENLNEIEIDYNPSDPGE
TGGQSEISVHPNDAEMFHSTNDNRNMRVNVNIVDENPQPLSEIRTFNVDS
FHDTVEQYNGSKIACVSKTESYSSQTDVTESLDSRNSKHFTLDSKIGDSV
QITIESEGQIYPEHLLAKAINYEYPVSSDVHKQSTIMENKSTAETLMNTE
NYLDQVENIECFTHLPTNSQDVIQFSLPESLELTNTLPGKGYGIFNQNDL
NDTPDEFEIENDDKLQIHSFNDNKIDLENEISELTSLQVNPAGTSESFKE
LNSQVKDSDNEEPLWGKSSSRSESEILPEAILACKNHKEQEEIDIIIIND
LACKSEIKKLEGGNEISVRNILLDHEKTGENFHMTNDEEFECEEIPFRKT
DTDQRAETDELNSGLTQEPNDITKLVIKKRDQDISSINDDLVDPRLSTTC
ENSAGPCTSLSDVKESDVDKERVNSSQQISIFEKTNLCESEPESIGKLEN
NEIGQSFSTFNSMNSENEMLRKILNTKYDLLVDLSDKSDRCNVNNTSQNS
LETYENSLEANYGIHSTSMVNDNSLARGSIVNSTVEFVGSVALLKENDDF
IVPDDNANCAHLLSENNGKSKLHFIDGEEHISGDLVRWKVLTNLDNTDNL
NSRDEAVSESNGNDINSTNISQSNKNKVSDILKTFPDTELENMESNIGSV
ENRFKEENIKEIDLSKDKKLSKPLSEPFPSTDERAESNTKVHGQLENVNT
FTYNTPMENITDLGRDQNKSNKPQIQRDEIVYDEDHFNEDVIENDKILRE
SLIDNSKFPCDIEMPSKSSEKSIENDTEKLSESQISDPNVALGSIKSDKM
NFQSGEDDYMPNPTTTVSQLNDISPDLSTEFESNLNIIRSNINQEEEPHN
FENELDLSKAFDSSVNEDSYENEMSERNTDSYFNIENETNSSLPCIKQDG
DLPDNYELQFPKEHVLIVSTDNENHIPRENEEVRETLRYKSELRNYVNVD
QLQPQSDPVIFSSGNENDGYNNFDESESRKGQAILTRSTIQRTSLTILPK
IDKPVLKKRLSKSLELYSHSLDFNDHSLSNSTSQEMVSFSLKSEEEPRPS
FPEQSAKYEKSNKRDLNIGDERDLSGNVAKYEYVHNLSKPSENSPQRCDC
GLWKFILLGLLFILLIVSFCISHIPISRHCNSFYYNILYNMNPFHIKRFV
PV*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000101muscle cell
PLANA:0000140anterior region of the whole animal
Vocabulary: INTERPRO
TermDefinition
IPR006588Peptide_N_glycanase_PAW_dom
Vocabulary: cellular component
TermDefinition
GO:0005737cytoplasm
Vocabulary: biological process
TermDefinition
GO:0006516glycoprotein catabolic process
GO:0006281DNA repair
GO:0006974cellular response to DNA damage stimulus
Vocabulary: molecular function
TermDefinition
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0016787hydrolase activity
GO:0046872metal ion binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 29..49
NoneNo IPR availableCOILSCoilCoilcoord: 1678..1698
NoneNo IPR availableCOILSCoilCoilcoord: 85..112
NoneNo IPR availableCOILSCoilCoilcoord: 2535..2555
NoneNo IPR availableCOILSCoilCoilcoord: 2817..2837
NoneNo IPR availableCOILSCoilCoilcoord: 1615..1635
NoneNo IPR availableCOILSCoilCoilcoord: 931..958
NoneNo IPR availableCOILSCoilCoilcoord: 3240..3260
NoneNo IPR availableCOILSCoilCoilcoord: 825..845
NoneNo IPR availableCOILSCoilCoilcoord: 1390..1410
NoneNo IPR availableCOILSCoilCoilcoord: 280..300
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2852..2868
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 3646..3663
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 3364..3383
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2447..2466
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2178..2202
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 3367..3381
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 3266..3289
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 3636..3663
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2852..2871
NoneNo IPR availableTMHMMTMhelixcoord: 3705..3727