SMED30016551
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30016551 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 25Note: Hover over icons to view figure legend
Homology
BLAST of SMED30016551 vs. Planmine SMEST
Match: SMESG000020889.1 (SMESG000020889.1) HSP 1 Score: 449.129 bits (1154), Expect = 2.132e-152 Identity = 228/263 (86.69%), Postives = 235/263 (89.35%), Query Frame = 2 Query: 2 FCSFEIIFIFIGLTKASNLAPRRHLQFVACFYNNEVYYVNHLQFSPYLPRLCKYVETHHRVQPGSTICYYNHFAKSNISQDIKRIQTYEYMSDAHCIKYPSVTPNPFIANTISKLLAIILKTRRNRIANSESKENRKQRKITTSSYQSNNNFWRFYETTPIPWSIQPFSRYPYDQENEYPNRYWNRRRSNAFRKDWHYNNQWSNNYSQRQYQTTPIPWNIQSFTXXXXXXXXXXXXXQTDSPITNWNRDRSYGRLNNYWRPNN 790 FCSFEIIFIFIGLTKASNLAPRRHLQFVACFYNNEVYYVNHLQFSPYLPRLCKYVETHHRVQPGSTICYYNHFAKSNISQDIKRIQTYEYMSDAHCIKYPSVTPNPFIANTISKLLAIILKTR NRI NSESKENRKQRKITTSSYQSNNNFWRFYETTPIPWSIQPFSRYPYDQENEYPNRYWNRRRSNAFR DW +NNQWSNNYSQRQYQTTPIPW+IQ F+ Y+++ + P WNR RS N WR NN Sbjct: 3 FCSFEIIFIFIGLTKASNLAPRRHLQFVACFYNNEVYYVNHLQFSPYLPRLCKYVETHHRVQPGSTICYYNHFAKSNISQDIKRIQTYEYMSDAHCIKYPSVTPNPFIANTISKLLAIILKTRGNRIVNSESKENRKQRKITTSSYQSNNNFWRFYETTPIPWSIQPFSRYPYDQENEYPNRYWNRRRSNAFRNDWRFNNQWSNNYSQRQYQTTPIPWSIQPFS-------RYPYDQENEYPNRYWNRRRS-NAFRNDWRFNN 257 HSP 2 Score: 277.33 bits (708), Expect = 8.690e-86 Identity = 155/180 (86.11%), Postives = 162/180 (90.00%), Query Frame = 2 Query: 443 SNNNFWRFYETTPIPWSIQPFSR-------YPYDQENEYPNRYWNRRRSNAFRKDWHYNNQWSNNYSQRQYQTTPIPWNIQSFTXXXXXXXXXXXXXQTDSPITNWNRDRSYGRLNNYWRPNNYIRGPNTRYQKLLAIKSPNHYHKYTAENTNRITTDGSLNTLLRKVYGFHLKDYIKLR 961 SNN R Y+TTPIPW IQPF++ + Y+Q +YPNRYWNRRRSN FR DW YNNQWSNNYSQRQYQTTPIPWNIQSFTRYYYINRNRNYNRQTDSPITNWNRDRSYGRLNNYWRPNNYIRGPNTRYQKLLAIKSPNHYHKYTAENT+RITTDGSLNTLLRKVYGFHLKDYIKLR Sbjct: 384 SNNYSQRQYQTTPIPWKIQPFTKDYYNTRYHNYNQRTDYPNRYWNRRRSNTFRNDWRYNNQWSNNYSQRQYQTTPIPWNIQSFTRYYYINRNRNYNRQTDSPITNWNRDRSYGRLNNYWRPNNYIRGPNTRYQKLLAIKSPNHYHKYTAENTHRITTDGSLNTLLRKVYGFHLKDYIKLR 563 HSP 3 Score: 122.094 bits (305), Expect = 3.268e-29 Identity = 80/123 (65.04%), Postives = 87/123 (70.73%), Query Frame = 2 Query: 443 SNNNFWRFYETTPIPWSIQPFS------RYP-YDQENEYPNRYWNRRRSNAFRKDWHYNNQWSNNYSQRQYQTTPIPWNIQSFTXXXXXXXXXXXXXQTDSPITNWNRDRSYGRLNNYWRPNN 790 SNN R Y+TTPIPW IQPF+ RY Y+Q +YPNRYWNRRRSN FR DW YNNQWSNNYSQRQYQTTPIPW IQ FT+ YY R RNYN++TD P WNR RS N WR NN Sbjct: 260 SNNYSQRQYQTTPIPWKIQPFTKDYYNTRYRNYNQRTDYPNRYWNRRRSNTFRNDWRYNNQWSNNYSQRQYQTTPIPWKIQPFTKDYYNTRYRNYNQRTDYPNRYWNRRRS-NTFRNDWRYNN 381 HSP 4 Score: 122.094 bits (305), Expect = 3.360e-29 Identity = 79/123 (64.23%), Postives = 86/123 (69.92%), Query Frame = 2 Query: 443 SNNNFWRFYETTPIPWSIQPFS------RYP-YDQENEYPNRYWNRRRSNAFRKDWHYNNQWSNNYSQRQYQTTPIPWNIQSFTXXXXXXXXXXXXXQTDSPITNWNRDRSYGRLNNYWRPNN 790 SNN R Y+TTPIPW IQPF+ RY Y+Q +YPNRYWNRRRSN FR DW YNNQWSNNYSQRQYQTTPIPW IQ FT+ YY R NYN++TD P WNR RS N WR NN Sbjct: 322 SNNYSQRQYQTTPIPWKIQPFTKDYYNTRYRNYNQRTDYPNRYWNRRRSNTFRNDWRYNNQWSNNYSQRQYQTTPIPWKIQPFTKDYYNTRYHNYNQRTDYPNRYWNRRRS-NTFRNDWRYNN 443
BLAST of SMED30016551 vs. Planmine SMEST
Match: SMESG000020889.1 (SMESG000020889.1) HSP 1 Score: 449.129 bits (1154), Expect = 2.344e-152 Identity = 228/263 (86.69%), Postives = 235/263 (89.35%), Query Frame = 2 Query: 2 FCSFEIIFIFIGLTKASNLAPRRHLQFVACFYNNEVYYVNHLQFSPYLPRLCKYVETHHRVQPGSTICYYNHFAKSNISQDIKRIQTYEYMSDAHCIKYPSVTPNPFIANTISKLLAIILKTRRNRIANSESKENRKQRKITTSSYQSNNNFWRFYETTPIPWSIQPFSRYPYDQENEYPNRYWNRRRSNAFRKDWHYNNQWSNNYSQRQYQTTPIPWNIQSFTXXXXXXXXXXXXXQTDSPITNWNRDRSYGRLNNYWRPNN 790 FCSFEIIFIFIGLTKASNLAPRRHLQFVACFYNNEVYYVNHLQFSPYLPRLCKYVETHHRVQPGSTICYYNHFAKSNISQDIKRIQTYEYMSDAHCIKYPSVTPNPFIANTISKLLAIILKTR NRI NSESKENRKQRKITTSSYQSNNNFWRFYETTPIPWSIQPFSRYPYDQENEYPNRYWNRRRSNAFR DW +NNQWSNNYSQRQYQTTPIPW+IQ F+ Y+++ + P WNR RS N WR NN Sbjct: 3 FCSFEIIFIFIGLTKASNLAPRRHLQFVACFYNNEVYYVNHLQFSPYLPRLCKYVETHHRVQPGSTICYYNHFAKSNISQDIKRIQTYEYMSDAHCIKYPSVTPNPFIANTISKLLAIILKTRGNRIVNSESKENRKQRKITTSSYQSNNNFWRFYETTPIPWSIQPFSRYPYDQENEYPNRYWNRRRSNAFRNDWRFNNQWSNNYSQRQYQTTPIPWSIQPFS-------RYPYDQENEYPNRYWNRRRS-NAFRNDWRFNN 257 HSP 2 Score: 277.33 bits (708), Expect = 9.606e-86 Identity = 155/180 (86.11%), Postives = 162/180 (90.00%), Query Frame = 2 Query: 443 SNNNFWRFYETTPIPWSIQPFSR-------YPYDQENEYPNRYWNRRRSNAFRKDWHYNNQWSNNYSQRQYQTTPIPWNIQSFTXXXXXXXXXXXXXQTDSPITNWNRDRSYGRLNNYWRPNNYIRGPNTRYQKLLAIKSPNHYHKYTAENTNRITTDGSLNTLLRKVYGFHLKDYIKLR 961 SNN R Y+TTPIPW IQPF++ + Y+Q +YPNRYWNRRRSN FR DW YNNQWSNNYSQRQYQTTPIPWNIQSFTRYYYINRNRNYNRQTDSPITNWNRDRSYGRLNNYWRPNNYIRGPNTRYQKLLAIKSPNHYHKYTAENT+RITTDGSLNTLLRKVYGFHLKDYIKLR Sbjct: 384 SNNYSQRQYQTTPIPWKIQPFTKDYYNTRYHNYNQRTDYPNRYWNRRRSNTFRNDWRYNNQWSNNYSQRQYQTTPIPWNIQSFTRYYYINRNRNYNRQTDSPITNWNRDRSYGRLNNYWRPNNYIRGPNTRYQKLLAIKSPNHYHKYTAENTHRITTDGSLNTLLRKVYGFHLKDYIKLR 563 HSP 3 Score: 122.094 bits (305), Expect = 3.297e-29 Identity = 80/123 (65.04%), Postives = 87/123 (70.73%), Query Frame = 2 Query: 443 SNNNFWRFYETTPIPWSIQPFS------RYP-YDQENEYPNRYWNRRRSNAFRKDWHYNNQWSNNYSQRQYQTTPIPWNIQSFTXXXXXXXXXXXXXQTDSPITNWNRDRSYGRLNNYWRPNN 790 SNN R Y+TTPIPW IQPF+ RY Y+Q +YPNRYWNRRRSN FR DW YNNQWSNNYSQRQYQTTPIPW IQ FT+ YY R RNYN++TD P WNR RS N WR NN Sbjct: 260 SNNYSQRQYQTTPIPWKIQPFTKDYYNTRYRNYNQRTDYPNRYWNRRRSNTFRNDWRYNNQWSNNYSQRQYQTTPIPWKIQPFTKDYYNTRYRNYNQRTDYPNRYWNRRRS-NTFRNDWRYNN 381 HSP 4 Score: 122.094 bits (305), Expect = 3.390e-29 Identity = 79/123 (64.23%), Postives = 86/123 (69.92%), Query Frame = 2 Query: 443 SNNNFWRFYETTPIPWSIQPFS------RYP-YDQENEYPNRYWNRRRSNAFRKDWHYNNQWSNNYSQRQYQTTPIPWNIQSFTXXXXXXXXXXXXXQTDSPITNWNRDRSYGRLNNYWRPNN 790 SNN R Y+TTPIPW IQPF+ RY Y+Q +YPNRYWNRRRSN FR DW YNNQWSNNYSQRQYQTTPIPW IQ FT+ YY R NYN++TD P WNR RS N WR NN Sbjct: 322 SNNYSQRQYQTTPIPWKIQPFTKDYYNTRYRNYNQRTDYPNRYWNRRRSNTFRNDWRYNNQWSNNYSQRQYQTTPIPWKIQPFTKDYYNTRYHNYNQRTDYPNRYWNRRRS-NTFRNDWRYNN 443
BLAST of SMED30016551 vs. Planmine SMEST
Match: SMESG000020889.1 (SMESG000020889.1) HSP 1 Score: 276.559 bits (706), Expect = 1.518e-86 Identity = 155/180 (86.11%), Postives = 162/180 (90.00%), Query Frame = 2 Query: 443 SNNNFWRFYETTPIPWSIQPFSR-------YPYDQENEYPNRYWNRRRSNAFRKDWHYNNQWSNNYSQRQYQTTPIPWNIQSFTXXXXXXXXXXXXXQTDSPITNWNRDRSYGRLNNYWRPNNYIRGPNTRYQKLLAIKSPNHYHKYTAENTNRITTDGSLNTLLRKVYGFHLKDYIKLR 961 SNN R Y+TTPIPW IQPF++ + Y+Q +YPNRYWNRRRSN FR DW YNNQWSNNYSQRQYQTTPIPWNIQSFTRYYYINRNRNYNRQTDSPITNWNRDRSYGRLNNYWRPNNYIRGPNTRYQKLLAIKSPNHYHKYTAENT+RITTDGSLNTLLRKVYGFHLKDYIKLR Sbjct: 292 SNNYSQRQYQTTPIPWKIQPFTKDYYNTRYHNYNQRTDYPNRYWNRRRSNTFRNDWRYNNQWSNNYSQRQYQTTPIPWNIQSFTRYYYINRNRNYNRQTDSPITNWNRDRSYGRLNNYWRPNNYIRGPNTRYQKLLAIKSPNHYHKYTAENTHRITTDGSLNTLLRKVYGFHLKDYIKLR 471 HSP 2 Score: 259.61 bits (662), Expect = 5.612e-80 Identity = 138/173 (79.77%), Postives = 145/173 (83.82%), Query Frame = 2 Query: 272 MSDAHCIKYPSVTPNPFIANTISKLLAIILKTRRNRIANSESKENRKQRKITTSSYQSNNNFWRFYETTPIPWSIQPFSRYPYDQENEYPNRYWNRRRSNAFRKDWHYNNQWSNNYSQRQYQTTPIPWNIQSFTXXXXXXXXXXXXXQTDSPITNWNRDRSYGRLNNYWRPNN 790 MSDAHCIKYPSVTPNPFIANTISKLLAIILKTR NRI NSESKENRKQRKITTSSYQSNNNFWRFYETTPIPWSIQPFSRYPYDQENEYPNRYWNRRRSNAFR DW +NNQWSNNYSQRQYQTTPIPW+IQ F+ Y+++ + P WNR RS N WR NN Sbjct: 1 MSDAHCIKYPSVTPNPFIANTISKLLAIILKTRGNRIVNSESKENRKQRKITTSSYQSNNNFWRFYETTPIPWSIQPFSRYPYDQENEYPNRYWNRRRSNAFRNDWRFNNQWSNNYSQRQYQTTPIPWSIQPFS-------RYPYDQENEYPNRYWNRRRS-NAFRNDWRFNN 165 HSP 3 Score: 120.168 bits (300), Expect = 6.805e-29 Identity = 80/123 (65.04%), Postives = 87/123 (70.73%), Query Frame = 2 Query: 443 SNNNFWRFYETTPIPWSIQPFS------RYP-YDQENEYPNRYWNRRRSNAFRKDWHYNNQWSNNYSQRQYQTTPIPWNIQSFTXXXXXXXXXXXXXQTDSPITNWNRDRSYGRLNNYWRPNN 790 SNN R Y+TTPIPW IQPF+ RY Y+Q +YPNRYWNRRRSN FR DW YNNQWSNNYSQRQYQTTPIPW IQ FT+ YY R RNYN++TD P WNR RS N WR NN Sbjct: 168 SNNYSQRQYQTTPIPWKIQPFTKDYYNTRYRNYNQRTDYPNRYWNRRRSNTFRNDWRYNNQWSNNYSQRQYQTTPIPWKIQPFTKDYYNTRYRNYNQRTDYPNRYWNRRRS-NTFRNDWRYNN 289 HSP 4 Score: 120.168 bits (300), Expect = 7.199e-29 Identity = 79/123 (64.23%), Postives = 86/123 (69.92%), Query Frame = 2 Query: 443 SNNNFWRFYETTPIPWSIQPFS------RYP-YDQENEYPNRYWNRRRSNAFRKDWHYNNQWSNNYSQRQYQTTPIPWNIQSFTXXXXXXXXXXXXXQTDSPITNWNRDRSYGRLNNYWRPNN 790 SNN R Y+TTPIPW IQPF+ RY Y+Q +YPNRYWNRRRSN FR DW YNNQWSNNYSQRQYQTTPIPW IQ FT+ YY R NYN++TD P WNR RS N WR NN Sbjct: 230 SNNYSQRQYQTTPIPWKIQPFTKDYYNTRYRNYNQRTDYPNRYWNRRRSNTFRNDWRYNNQWSNNYSQRQYQTTPIPWKIQPFTKDYYNTRYHNYNQRTDYPNRYWNRRRS-NTFRNDWRYNN 351
BLAST of SMED30016551 vs. Planmine SMEST
Match: SMESG000020887.1 (SMESG000020887.1) HSP 1 Score: 121.324 bits (303), Expect = 3.491e-30 Identity = 86/105 (81.90%), Postives = 90/105 (85.71%), Query Frame = 3 Query: 471 KQRQYLGAFNHSVAIPTT-------KKMNIQIDIGTGDVQMPFAKTXXXXXXXXXXXHNDNTKQRQYRGTFNHSLGXXXXXXXXXXXGKLIPQLQIGIETAHMAV 764 KQRQY G FNHS+ I TT ++ IQ DIGTGDVQMPFAKTGIIIISGQIIIHNDNTKQRQYRGTFNHSLGIITSTEIETTIGKLIPQL+IG ETAHMAV Sbjct: 243 KQRQYRGTFNHSLGIITTPDIVTTINELTIQRDIGTGDVQMPFAKTGIIIISGQIIIHNDNTKQRQYRGTFNHSLGIITSTEIETTIGKLIPQLRIGTETAHMAV 347 HSP 2 Score: 117.857 bits (294), Expect = 5.577e-29 Identity = 76/91 (83.52%), Postives = 81/91 (89.01%), Query Frame = 3 Query: 468 MKQRQYLGAFNHSVAIPTTKKMNIQIDIGTGDVQMPFAKTXXXXXXXXXXXHNDNTKQRQYRGTFNHSLGXXXXXXXXXXXGKLIPQLQIG 740 MKQRQYLGAFNHSVAIPTTKKMNIQIDIGTGDVQMPFA TG+IIISGQIIIHNDNTKQRQYRG FNHSL IT+ +I TTI +L Q+ IG Sbjct: 1 MKQRQYLGAFNHSVAIPTTKKMNIQIDIGTGDVQMPFAMTGVIIISGQIIIHNDNTKQRQYRGKFNHSLRTITTPDIVTTINELTIQIDIG 91 HSP 3 Score: 93.2041 bits (230), Expect = 1.660e-20 Identity = 72/113 (63.72%), Postives = 80/113 (70.80%), Query Frame = 3 Query: 441 SQIIISGGFMKQRQYLGAFNHSVAIPTT-------KKMNIQIDIGTGDVQMPFAKTXXXXXXXXXXXHNDNTKQRQYRGTFNHSLGXXXXXXXXXXXGKLIPQLQIGIETAHM 758 +QIII KQRQY G FNHS+ TT ++ IQ DIGTGDVQMPFA TG+IIISGQIIIHNDNTKQRQYRGTFNHSLGIIT+ +I TTI +L Q IG M Sbjct: 171 AQIIIHNDNTKQRQYRGKFNHSLRTITTPDIVTTINELTIQRDIGTGDVQMPFAMTGVIIISGQIIIHNDNTKQRQYRGTFNHSLGIITTPDIVTTINELTIQRDIGTGDVQM 283 HSP 4 Score: 83.5741 bits (205), Expect = 3.259e-17 Identity = 63/103 (61.17%), Postives = 72/103 (69.90%), Query Frame = 3 Query: 471 KQRQYLGAFNHSVAIPTT-------KKMNIQIDIGTGDVQMPFAKTXXXXXXXXXXXHNDNTKQRQYRGTFNHSLGXXXXXXXXXXXGKLIPQLQIGIETAHM 758 KQRQY G FN+S+ TT ++ IQIDIGTGDVQMPFA TG++IIS QIIIHNDNTKQRQYRG FNHSL IT+ +I TTI +L Q IG M Sbjct: 119 KQRQYRGKFNNSLRTITTPDIVTTINELTIQIDIGTGDVQMPFAMTGVLIISAQIIIHNDNTKQRQYRGKFNHSLRTITTPDIVTTINELTIQRDIGTGDVQM 221 HSP 5 Score: 81.2629 bits (199), Expect = 1.742e-16 Identity = 63/103 (61.17%), Postives = 72/103 (69.90%), Query Frame = 3 Query: 471 KQRQYLGAFNHSVAIPTT-------KKMNIQIDIGTGDVQMPFAKTXXXXXXXXXXXHNDNTKQRQYRGTFNHSLGXXXXXXXXXXXGKLIPQLQIGIETAHM 758 KQRQY G FNHS+ TT ++ IQIDIGTGDVQ+PF TG IIISGQIIIHNDNTKQRQYRG FN+SL IT+ +I TTI +L Q+ IG M Sbjct: 57 KQRQYRGKFNHSLRTITTPDIVTTINELTIQIDIGTGDVQIPFEMTGFIIISGQIIIHNDNTKQRQYRGKFNNSLRTITTPDIVTTINELTIQIDIGTGDVQM 159 The following BLAST results are available for this feature:
BLAST of SMED30016551 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30016551 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30016551 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30016551 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30016551 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30016551 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30016551 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30016551 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 0
BLAST of SMED30016551 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30016551 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30016551 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30016551 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30016551 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30016551 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 4
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30016551 ID=SMED30016551|Name=SMED30016551|organism=Schmidtea mediterranea sexual|type=transcript|length=1549bpback to top protein sequence of SMED30016551-orf-1 >SMED30016551-orf-1 ID=SMED30016551-orf-1|Name=SMED30016551-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=394bp FCSFEIIFIFIGLTKASNLAPRRHLQFVACFYNNEVYYVNHLQFSPYLPRback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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