Nuclear nucleic acid-binding protein C1D
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30016460 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Homology
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Human
Match: C1D (C1D nuclear receptor corepressor [Source:HGNC Symbol;Acc:HGNC:29911]) HSP 1 Score: 62.3882 bits (150), Expect = 4.494e-12 Identity = 37/119 (31.09%), Postives = 65/119 (54.62%), Query Frame = 2 Query: 53 FLSGLPEDVIDTVTKLIENIRSVEDIFKESESNNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDVAKVQINKEVCGRIIRHNLWE 409 +LS E+ I V ++++ + SV N LQ + + L+ + DL Y +N++F+VYL GV+ K HP+K+E+ERI + KE +K A ++++ R +++ LWE Sbjct: 17 YLSAF-ENSIGAVDEMLKTMMSVS-------RNELLQ--KLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAG-KLDRGAASRFVKNALWE 124
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Human
Match: C1D (C1D nuclear receptor corepressor [Source:HGNC Symbol;Acc:HGNC:29911]) HSP 1 Score: 62.3882 bits (150), Expect = 4.494e-12 Identity = 37/119 (31.09%), Postives = 65/119 (54.62%), Query Frame = 2 Query: 53 FLSGLPEDVIDTVTKLIENIRSVEDIFKESESNNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDVAKVQINKEVCGRIIRHNLWE 409 +LS E+ I V ++++ + SV N LQ + + L+ + DL Y +N++F+VYL GV+ K HP+K+E+ERI + KE +K A ++++ R +++ LWE Sbjct: 17 YLSAF-ENSIGAVDEMLKTMMSVS-------RNELLQ--KLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAG-KLDRGAASRFVKNALWE 124
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Human
Match: C1D (C1D nuclear receptor corepressor [Source:HGNC Symbol;Acc:HGNC:29911]) HSP 1 Score: 62.3882 bits (150), Expect = 4.494e-12 Identity = 37/119 (31.09%), Postives = 65/119 (54.62%), Query Frame = 2 Query: 53 FLSGLPEDVIDTVTKLIENIRSVEDIFKESESNNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDVAKVQINKEVCGRIIRHNLWE 409 +LS E+ I V ++++ + SV N LQ + + L+ + DL Y +N++F+VYL GV+ K HP+K+E+ERI + KE +K A ++++ R +++ LWE Sbjct: 17 YLSAF-ENSIGAVDEMLKTMMSVS-------RNELLQ--KLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAG-KLDRGAASRFVKNALWE 124
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Human
Match: C1D (C1D nuclear receptor corepressor [Source:HGNC Symbol;Acc:HGNC:29911]) HSP 1 Score: 62.7734 bits (151), Expect = 6.705e-12 Identity = 37/119 (31.09%), Postives = 65/119 (54.62%), Query Frame = 2 Query: 53 FLSGLPEDVIDTVTKLIENIRSVEDIFKESESNNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDVAKVQINKEVCGRIIRHNLWE 409 +LS E+ I V ++++ + SV N LQ + + L+ + DL Y +N++F+VYL GV+ K HP+K+E+ERI + KE +K A ++++ R +++ LWE Sbjct: 56 YLSAF-ENSIGAVDEMLKTMMSVSR-------NELLQ--KLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAG-KLDRGAASRFVKNALWE 163
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Zebrafish
Match: c1d (C1D nuclear receptor corepressor [Source:NCBI gene;Acc:474329]) HSP 1 Score: 68.1662 bits (165), Expect = 2.822e-14 Identity = 36/117 (30.77%), Postives = 67/117 (57.26%), Query Frame = 2 Query: 68 PEDVIDTVTKLIENIRSVEDIFKE----SESNNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDVAKVQINKEVCGRIIRHNLW 406 P ++ D + ++ SV+++ + S S+ L++ + L+ + DL Y +N++F++YL GV+ K+HPIK+E+ERI + + KE ++ A I+KE R +R+ LW Sbjct: 11 PTEIEDNLNDFDSSLSSVQNMVQTLVSVSRSDRLLKL---DPLEQAKLDLMSAYALNSMFWMYLVTQGVNPKDHPIKQELERIRTYMNKVKEITDRRKA-AHIDKEAASRFVRNALW 123
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Zebrafish
Match: c1d (C1D nuclear receptor corepressor [Source:NCBI gene;Acc:474329]) HSP 1 Score: 68.1662 bits (165), Expect = 2.822e-14 Identity = 36/117 (30.77%), Postives = 67/117 (57.26%), Query Frame = 2 Query: 68 PEDVIDTVTKLIENIRSVEDIFKE----SESNNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDVAKVQINKEVCGRIIRHNLW 406 P ++ D + ++ SV+++ + S S+ L++ + L+ + DL Y +N++F++YL GV+ K+HPIK+E+ERI + + KE ++ A I+KE R +R+ LW Sbjct: 11 PTEIEDNLNDFDSSLSSVQNMVQTLVSVSRSDRLLKL---DPLEQAKLDLMSAYALNSMFWMYLVTQGVNPKDHPIKQELERIRTYMNKVKEITDRRKA-AHIDKEAASRFVRNALW 123
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Xenopus
Match: msmb.3 (microseminoprotein beta, gene 3 [Source:Xenbase;Acc:XB-GENE-1018396]) HSP 1 Score: 61.6178 bits (148), Expect = 7.985e-12 Identity = 33/113 (29.20%), Postives = 65/113 (57.52%), Query Frame = 2 Query: 68 PEDVIDTVTKLIENIRSVEDIFKESESNNFLQIAQE-NNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDVAKVQINKEVCGRIIRHNL 403 P ++ + + +++ SV+++ + S + ++ Q+ L+ + DL Y +N+LF++YL G++ K HP+KEE+ERI S + KE ++ A +++K R I+H L Sbjct: 12 PTEIHEYLMAFDKSVGSVDEMLNKMMSVSRSELLQKIEPLEQAKLDLVSAYTLNSLFWIYLTTQGINPKEHPVKEELERIRSYMNRVKEITDRKKA-AKLDKGAARRFIKHAL 123
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Xenopus
Match: msmb.3 (microseminoprotein beta, gene 3 [Source:Xenbase;Acc:XB-GENE-1018396]) HSP 1 Score: 61.2326 bits (147), Expect = 1.880e-11 Identity = 33/113 (29.20%), Postives = 65/113 (57.52%), Query Frame = 2 Query: 68 PEDVIDTVTKLIENIRSVEDIFKESESNNFLQIAQE-NNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDVAKVQINKEVCGRIIRHNL 403 P ++ + + +++ SV+++ + S + ++ Q+ L+ + DL Y +N+LF++YL G++ K HP+KEE+ERI S + KE ++ A +++K R I+H L Sbjct: 23 PTEIHEYLMAFDKSVGSVDEMLNKMMSVSRSELLQKIEPLEQAKLDLVSAYTLNSLFWIYLTTQGINPKEHPVKEELERIRSYMNRVKEITDRKKA-AKLDKGAARRFIKHAL 134
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Mouse
Match: C1d (C1D nuclear receptor co-repressor [Source:MGI Symbol;Acc:MGI:1927354]) HSP 1 Score: 68.1662 bits (165), Expect = 2.452e-14 Identity = 36/117 (30.77%), Postives = 68/117 (58.12%), Query Frame = 2 Query: 68 PEDVIDTVTKLIENIRSVEDIFKESES---NNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDVAKVQINKEVCGRIIRHNLWE 409 P ++ +++T L ++ +V+D+ K + N LQ + + L+ + DL Y +N++F+VYL GV+ K HP+K+E+ERI + KE +K A ++++ R +++ LWE Sbjct: 11 PVEIHESLTALESSLGAVDDMLKTMMAVSRNELLQ--KLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKA-AKLDRGAASRFVKNALWE 124
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Mouse
Match: C1d (C1D nuclear receptor co-repressor [Source:MGI Symbol;Acc:MGI:1927354]) HSP 1 Score: 59.3066 bits (142), Expect = 2.811e-11 Identity = 33/111 (29.73%), Postives = 63/111 (56.76%), Query Frame = 2 Query: 68 PEDVIDTVTKLIENIRSVEDIFKESES---NNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDVAKVQINKEVCGRII 391 P ++ +++T L ++ +V+D+ K + N LQ + + L+ + DL Y +N++F+VYL GV+ K HP+K+E+ERI + KE +K A ++++ R + Sbjct: 11 PVEIHESLTALESSLGAVDDMLKTMMAVSRNELLQ--KLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKA-AKLDRGAASRFV 118
BLAST of Nuclear nucleic acid-binding protein C1D vs. UniProt/SwissProt
Match: sp|Q5ZHS3|C1D_CHICK (Nuclear nucleic acid-binding protein C1D OS=Gallus gallus OX=9031 GN=C1D PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.417e-14 Identity = 36/116 (31.03%), Postives = 68/116 (58.62%), Query Frame = 2 Query: 68 PEDVIDTVTKLIENIRSVEDIFKESESNNFLQIAQE-NNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDVAKVQINKEVCGRIIRHNLWES 412 P ++ D +T +++ SV+++ K S + ++ Q+ L+ + DL Y +N++F+VYL G++ K HP+K+E+ERI + + KE +K A +++K R +R+ LWE Sbjct: 11 PTEIHDYLTTFEKSLTSVDEMLKTMMSVSRSELLQKLEPLEQAKLDLVSAYTLNSMFWVYLATQGINPKEHPVKQELERIRTYMNKVKEIADKKKAS-KLDKGAASRFVRNALWEP 125
BLAST of Nuclear nucleic acid-binding protein C1D vs. UniProt/SwissProt
Match: sp|Q7TSU0|C1D_CRIGR (Nuclear nucleic acid-binding protein C1D OS=Cricetulus griseus OX=10029 GN=C1D PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.027e-13 Identity = 37/120 (30.83%), Postives = 69/120 (57.50%), Query Frame = 2 Query: 68 PEDVIDTVTKLIENIRSVEDIFKESES---NNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDVAKVQINKEVCGRIIRHNLWESMQ 418 P ++ ++++ L ++ +V+D+ K S N LQ + + L+ + DL Y +N++F+VYL GV+ K HP+K+E+ERI + KE +K A ++++ R +++ LWE Q Sbjct: 11 PVEIHESLSALESSLGAVDDMLKTMMSVSRNELLQ--KLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKA-AKLDRGAASRFVKNALWEPKQ 127
BLAST of Nuclear nucleic acid-binding protein C1D vs. UniProt/SwissProt
Match: sp|O35473|C1D_MOUSE (Nuclear nucleic acid-binding protein C1D OS=Mus musculus OX=10090 GN=C1d PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.715e-13 Identity = 36/117 (30.77%), Postives = 68/117 (58.12%), Query Frame = 2 Query: 68 PEDVIDTVTKLIENIRSVEDIFKESES---NNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDVAKVQINKEVCGRIIRHNLWE 409 P ++ +++T L ++ +V+D+ K + N LQ + + L+ + DL Y +N++F+VYL GV+ K HP+K+E+ERI + KE +K A ++++ R +++ LWE Sbjct: 11 PVEIHESLTALESSLGAVDDMLKTMMAVSRNELLQ--KLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKA-AKLDRGAASRFVKNALWE 124
BLAST of Nuclear nucleic acid-binding protein C1D vs. UniProt/SwissProt
Match: sp|Q5XJ97|C1D_DANRE (Nuclear nucleic acid-binding protein C1D OS=Danio rerio OX=7955 GN=c1d PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.803e-13 Identity = 36/117 (30.77%), Postives = 67/117 (57.26%), Query Frame = 2 Query: 68 PEDVIDTVTKLIENIRSVEDIFKE----SESNNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDVAKVQINKEVCGRIIRHNLW 406 P ++ D + ++ SV+++ + S S+ L++ + L+ + DL Y +N++F++YL GV+ K+HPIK+E+ERI + + KE ++ A I+KE R +R+ LW Sbjct: 11 PTEIEDNLNDFDSSLSSVQNMVQTLVSVSRSDRLLKL---DPLEQAKLDLMSAYALNSMFWMYLVTQGVNPKDHPIKQELERIRTYMNKVKEITDRRKA-AHIDKEAASRFVRNALW 123
BLAST of Nuclear nucleic acid-binding protein C1D vs. UniProt/SwissProt
Match: sp|Q5RBU4|C1D_PONAB (Nuclear nucleic acid-binding protein C1D OS=Pongo abelii OX=9601 GN=C1D PE=2 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 1.867e-11 Identity = 37/119 (31.09%), Postives = 65/119 (54.62%), Query Frame = 2 Query: 53 FLSGLPEDVIDTVTKLIENIRSVEDIFKESESNNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDVAKVQINKEVCGRIIRHNLWE 409 +LS E+ I V ++++ + SV N LQ + + L+ + DL Y +N++F+VYL GV+ K HP+K+E+ERI + KE +K A ++++ R +++ LWE Sbjct: 17 YLSAF-ENSIGAVDEMLKTMMSVS-------RNELLQ--KLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAG-KLDRGAASRFVKNALWE 124
BLAST of Nuclear nucleic acid-binding protein C1D vs. TrEMBL
Match: A0A068W8J1 (Nuclear nucleic acid binding protein C1D OS=Echinococcus granulosus OX=6210 GN=EgrG_000829800 PE=4 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.432e-20 Identity = 44/135 (32.59%), Postives = 83/135 (61.48%), Query Frame = 2 Query: 47 MSFLSGLPEDVIDTVTKLIENIRSVEDI---FKESESNNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDVAKV---QINKEVCGRIIRHNLWESMQDKKRK 433 M+ +P ++ + + ++I+ + DI +KE+ N +++ + +Q +L+ Y +NALFFVYL+C+GVDAK+HPI +E+ER+++ LK C+ K +++ +++KE R ++ LW+S Q K R+ Sbjct: 4 MALFDCIPNEISELLVSFSDSIQGISDIIESYKEAMKTNAIELPP---MQRVQTELSLAYAMNALFFVYLRCHGVDAKDHPILKELERLTACLKRCQNICSKQSSELNHSRLDKEASKRFVKRALWQSAQSKTRR 135
BLAST of Nuclear nucleic acid-binding protein C1D vs. TrEMBL
Match: A0A4S2M906 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_001779 PE=4 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.251e-19 Identity = 47/140 (33.57%), Postives = 80/140 (57.14%), Query Frame = 2 Query: 50 SFLSGLPEDVIDTVTKLIENIRSVEDIFKE--SESNNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDV-AKVQINKEVCGRIIRHNLWESMQDKKRKNDDSIDENT 460 S +PE++ + E+I V+ K + N+ +I+ NL+ ++ +L+ Y NALFF+YL+CNGVD NHPI +E+ R+ + LK C+ EK+ ++++ +KE R I+H LW+S K +K + + T Sbjct: 11 SIFDEIPEEISQHLVTFSESIDDVDSYIKGYLASQNSRTEIS---NLEQIKEELSLCYAFNALFFIYLRCNGVDTGNHPIMQELNRVMTALKRCRMLTEKESNSRLKCDKEAASRFIKHALWQSAHSKAKKRRPNQESGT 147
BLAST of Nuclear nucleic acid-binding protein C1D vs. TrEMBL
Match: W6UPZ3 (Nuclear nucleic acid-binding protein C1D OS=Echinococcus granulosus OX=6210 GN=EGR_01358 PE=4 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.583e-19 Identity = 44/135 (32.59%), Postives = 82/135 (60.74%), Query Frame = 2 Query: 47 MSFLSGLPEDVIDTVTKLIENIRSVEDI---FKESESNNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEK---DVAKVQINKEVCGRIIRHNLWESMQDKKRK 433 M+ +P ++ + + +I+ + DI +KE+ N +++ + +Q +L+ Y +NALFFVYL+C+GVDAK+HPI +E+ER+++ LK C+ K +++ +++KE R ++ LW+S Q K R+ Sbjct: 4 MALFDCIPNEINELLVSFSGSIQGISDIIESYKEAMKTNAIELPP---MQRVQTELSLAYAMNALFFVYLRCHGVDAKDHPILKELERLTACLKRCQNICSKQSSELSHSRLDKEASKRFVKRALWQSAQSKTRR 135
BLAST of Nuclear nucleic acid-binding protein C1D vs. TrEMBL
Match: A0A430QA71 (Exosome complex protein LRP1 OS=Schistosoma bovis OX=6184 GN=DC041_0011372 PE=4 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.538e-19 Identity = 42/129 (32.56%), Postives = 78/129 (60.47%), Query Frame = 2 Query: 50 SFLSGLPEDVIDTVTKLIENIRSVEDIFKESESNNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKD-VAKVQINKEVCGRIIRHNLWESMQDKKRK 433 S +PE++ + E VE + K+ + + + ++LD ++ DL+ Y NALFF+YL+CNGV+ ++HPI +E++R+ + LK C+ E++ A+++++KE R ++H LW+S K +K Sbjct: 5 SIFDEIPEEISAQLVSFSEATDDVEQLVKKISNFSNDSNTEVSDLDTIKTDLSLCYAFNALFFMYLRCNGVETQSHPIMQELDRVMNALKRCRSLVEREGSARLKLDKEATTRFVKHALWKSAHTKTKK 133
BLAST of Nuclear nucleic acid-binding protein C1D vs. TrEMBL
Match: A0A183KLB8 (Uncharacterized protein OS=Schistosoma curassoni OX=6186 GN=SCUD_LOCUS15832 PE=4 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.538e-19 Identity = 42/129 (32.56%), Postives = 78/129 (60.47%), Query Frame = 2 Query: 50 SFLSGLPEDVIDTVTKLIENIRSVEDIFKESESNNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKD-VAKVQINKEVCGRIIRHNLWESMQDKKRK 433 S +PE++ + E VE + K+ + + + ++LD ++ DL+ Y NALFF+YL+CNGV+ ++HPI +E++R+ + LK C+ E++ A+++++KE R ++H LW+S K +K Sbjct: 5 SIFDEIPEEISAQLVSFSEATDDVEQLVKKISNFSNDSNTEVSDLDTIKTDLSLCYAFNALFFMYLRCNGVETQSHPIMQELDRVMNALKRCRSLVEREGSARLKLDKEATTRFVKHALWKSAHTKTKK 133
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Cavefish
Match: c1d (C1D nuclear receptor corepressor [Source:NCBI gene;Acc:103040635]) HSP 1 Score: 62.7734 bits (151), Expect = 2.140e-12 Identity = 37/126 (29.37%), Postives = 71/126 (56.35%), Query Frame = 2 Query: 53 FLSGLPEDVIDTVTKLIENIRSVEDIFKESESNNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDVAKVQINKEVCGRIIRHNLWESMQDKKR 430 FL+G + ++ V +I+ + SV S+S + + + L+ + DL Y +N+LF++YL G++ K H IK+E+ERI + + KE +K A +++K+ R +R+ LW++ + K + Sbjct: 17 FLTGF-QSSVNNVQSVIQTLMSV------SKSEHL----KLDPLEQAKLDLMSAYTLNSLFWMYLVTQGINPKEHGIKQELERIRTYMNRVKEITDKKKA-ARLDKDAASRFVRNALWDAEESKAK 130
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Cavefish
Match: c1d (C1D nuclear receptor corepressor [Source:NCBI gene;Acc:103040635]) HSP 1 Score: 62.7734 bits (151), Expect = 2.140e-12 Identity = 37/126 (29.37%), Postives = 71/126 (56.35%), Query Frame = 2 Query: 53 FLSGLPEDVIDTVTKLIENIRSVEDIFKESESNNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDVAKVQINKEVCGRIIRHNLWESMQDKKR 430 FL+G + ++ V +I+ + SV S+S + + + L+ + DL Y +N+LF++YL G++ K H IK+E+ERI + + KE +K A +++K+ R +R+ LW++ + K + Sbjct: 17 FLTGF-QSSVNNVQSVIQTLMSV------SKSEHL----KLDPLEQAKLDLMSAYTLNSLFWMYLVTQGINPKEHGIKQELERIRTYMNRVKEITDKKKA-ARLDKDAASRFVRNALWDAEESKAK 130
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Cavefish
Match: c1d (C1D nuclear receptor corepressor [Source:NCBI gene;Acc:103040635]) HSP 1 Score: 62.7734 bits (151), Expect = 2.140e-12 Identity = 37/126 (29.37%), Postives = 71/126 (56.35%), Query Frame = 2 Query: 53 FLSGLPEDVIDTVTKLIENIRSVEDIFKESESNNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDVAKVQINKEVCGRIIRHNLWESMQDKKR 430 FL+G + ++ V +I+ + SV S+S + + + L+ + DL Y +N+LF++YL G++ K H IK+E+ERI + + KE +K A +++K+ R +R+ LW++ + K + Sbjct: 17 FLTGF-QSSVNNVQSVIQTLMSV------SKSEHL----KLDPLEQAKLDLMSAYTLNSLFWMYLVTQGINPKEHGIKQELERIRTYMNRVKEITDKKKA-ARLDKDAASRFVRNALWDAEESKAK 130
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007823.1 (pep scaffold:Pmarinus_7.0:GL477731:266322:270054:-1 gene:ENSPMAG00000007078.1 transcript:ENSPMAT00000007823.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 53.9138 bits (128), Expect = 5.421e-10 Identity = 29/72 (40.28%), Postives = 45/72 (62.50%), Query Frame = 2 Query: 221 INALFF---VYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKE-KDVAKVQINKEVCGRIIRHNLWESMQDK 424 ++ LF VYL C GV+ K HPIK+EM+RI + ++ KE + K +AK ++K V R +R+ LW + D+ Sbjct: 56 LSKLFLSTPVYLVCQGVNPKMHPIKQEMDRIKTHMQRLKEITDRKKMAK--LDKGVASRFVRNALWTAEPDR 125
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Nematostella
Match: EDO38176 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SDV0]) HSP 1 Score: 78.1814 bits (191), Expect = 1.708e-18 Identity = 44/136 (32.35%), Postives = 72/136 (52.94%), Query Frame = 2 Query: 65 LPEDVIDTVTKLIENIRSVEDIFKE---------SESNNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDVAKVQINKEVCGRIIRHNLWESMQDKKRKNDDS 445 LPE+V+D++ E++ ++ED K ES LQ+A+ N L Y IN+LF++YL G+D K HPIK+E++RI + KE + K ++I+K R ++ LW+ ++ + DDS Sbjct: 11 LPEEVVDSMESFHESLGNIEDALKPLLENSTDDMKESMGPLQLAKLN--------LVVAYSINSLFWMYLITQGMDPKEHPIKQELDRIKKYMVKVKEVQHKQEVSMRIDKGAAKRFVKSALWQPTSNEDKGKDDS 138
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Medaka
Match: c1d (C1D nuclear receptor corepressor [Source:NCBI gene;Acc:101167066]) HSP 1 Score: 60.4622 bits (145), Expect = 1.659e-11 Identity = 33/100 (33.00%), Postives = 56/100 (56.00%), Query Frame = 2 Query: 182 LDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDVAKVQINKEVCGRIIRHNLWES-MQDKKRKNDDSIDENTANSQIP 478 LD + DL Y +N+LF+VYL G++ + H IK+E+ERI + + KE +K A +++K R IR L+E +D +KN+ ++ ++ P Sbjct: 50 LDQAKLDLMSAYTLNSLFWVYLVTRGINPREHGIKQELERIRAYMNRVKEITDKKKA-ARLDKGAASRFIRSALYEPDDKDSGKKNESKKQADSTAAEPP 148
BLAST of Nuclear nucleic acid-binding protein C1D vs. Planmine SMEST
Match: SMESG000066583.1 (SMESG000066583.1) HSP 1 Score: 299.286 bits (765), Expect = 4.401e-105 Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 2 Query: 47 MSFLSGLPEDVIDTVTKLIENIRSVEDIFKESESNNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDVAKVQINKEVCGRIIRHNLWESMQDKKRKNDDSIDENTANSQIPXXXXXXXXSVRK 514 MSFLSGLPEDVIDTVTKLIENIRSVEDIFKESESNNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKD+AKVQINKEVCGRIIRHNLWESMQDKKRKNDDSIDENTANSQIPKKKKKNKKSVRK Sbjct: 1 MSFLSGLPEDVIDTVTKLIENIRSVEDIFKESESNNFLQIAQENNLDNLQYDLTYLYGINALFFVYLQCNGVDAKNHPIKEEMERISSKLKFCKEYKEKDLAKVQINKEVCGRIIRHNLWESMQDKKRKNDDSIDENTANSQIPKKKKKNKKSVRK 156 The following BLAST results are available for this feature:
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 4
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 2
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of Nuclear nucleic acid-binding protein C1D vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Nuclear nucleic acid-binding protein C1D vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 3
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Nuclear nucleic acid-binding protein C1D vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of Nuclear nucleic acid-binding protein C1D vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30016460 ID=SMED30016460|Name=Nuclear nucleic acid-binding protein C1D|organism=Schmidtea mediterranea sexual|type=transcript|length=608bpback to top protein sequence of SMED30016460-orf-1 >SMED30016460-orf-1 ID=SMED30016460-orf-1|Name=SMED30016460-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=157bp MSFLSGLPEDVIDTVTKLIENIRSVEDIFKESESNNFLQIAQENNLDNLQback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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