SMED30016440
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30016440 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Homology
BLAST of SMED30016440 vs. TrEMBL
Match: K7JS43 (C2H2-type domain-containing protein OS=Nasonia vitripennis OX=7425 PE=4 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 8.677e-17 Identity = 61/219 (27.85%), Postives = 108/219 (49.32%), Query Frame = -1 Query: 201 GENKILLSENKISSFGNLDAMLRARNNILNLNYSAYHLKNNIGTKYRLCHIDEETQAYVFNHCQAKPNARRIKHENVLISIVAYLEKIGFEIDVEKSPKYLPNP-TKLKPDMTIRSRRNKDIHVLDLKVPYDSR-EGFDKAR-GNYVKYKDLALEIGQAFNEKATVSAIVIGCLGSWDKKNNAPLAKIGLTKAEIQSLARIACAKAVTACYHIYREHVS 848 G++ L + F + + RAR ++L LN +A + + + R C D ET +V +HC AR+ +H N+ +V + I V ++ + P L+PD+ +R N+ + ++D+ VP+++R E FD R KY LA ++ + TV A V+G LG+WD +N L+ + +++ + R+ + + IY EHVS Sbjct: 136 GQSNHFLRSGSFTRFCDWRFIHRARLDVLPLN-AAKRWQRGMDKRCRRCGSDLETLPHVLSHCGPHSAARQKRHNNIQDRLVKAASRCPGTISVNQTVVGVRGPDAALRPDIVVRDDVNRRVTIVDVAVPFENRLEAFDGVREAKIAKYTPLARQLTDS-GYTVTVEAFVVGALGAWDPRNERVLSLLSISRYYAILMRRLMVSDTIRWSRDIYVEHVS 352
BLAST of SMED30016440 vs. TrEMBL
Match: K7JS44 (C2H2-type domain-containing protein OS=Nasonia vitripennis OX=7425 PE=4 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 9.003e-17 Identity = 61/219 (27.85%), Postives = 108/219 (49.32%), Query Frame = -1 Query: 201 GENKILLSENKISSFGNLDAMLRARNNILNLNYSAYHLKNNIGTKYRLCHIDEETQAYVFNHCQAKPNARRIKHENVLISIVAYLEKIGFEIDVEKSPKYLPNP-TKLKPDMTIRSRRNKDIHVLDLKVPYDSR-EGFDKAR-GNYVKYKDLALEIGQAFNEKATVSAIVIGCLGSWDKKNNAPLAKIGLTKAEIQSLARIACAKAVTACYHIYREHVS 848 G++ L + F + + RAR ++L LN +A + + + R C D ET +V +HC AR+ +H N+ +V + I V ++ + P L+PD+ +R N+ + ++D+ VP+++R E FD R KY LA ++ + TV A V+G LG+WD +N L+ + +++ + R+ + + IY EHVS Sbjct: 136 GQSNHFLRSGSFTRFCDWRFIHRARLDVLPLN-AAKRWQRGMDKRCRRCGSDLETLPHVLSHCGPHSAARQKRHNNIQDRLVKAASRCPGTISVNQTVVGVRGPDAALRPDIVVRDDVNRRVTIVDVAVPFENRLEAFDGVREAKIAKYTPLARQLTDS-GYTVTVEAFVVGALGAWDPRNERVLSLLSISRYYAILMRRLMVSDTIRWSRDIYVEHVS 352
BLAST of SMED30016440 vs. TrEMBL
Match: K7JWY8 (C2H2-type domain-containing protein OS=Nasonia vitripennis OX=7425 PE=4 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.006e-16 Identity = 61/219 (27.85%), Postives = 108/219 (49.32%), Query Frame = -1 Query: 201 GENKILLSENKISSFGNLDAMLRARNNILNLNYSAYHLKNNIGTKYRLCHIDEETQAYVFNHCQAKPNARRIKHENVLISIVAYLEKIGFEIDVEKSPKYLPNP-TKLKPDMTIRSRRNKDIHVLDLKVPYDSR-EGFDKAR-GNYVKYKDLALEIGQAFNEKATVSAIVIGCLGSWDKKNNAPLAKIGLTKAEIQSLARIACAKAVTACYHIYREHVS 848 G++ L + F + + RAR ++L LN +A + + + R C D ET +V +HC AR+ +H N+ +V + I V ++ + P L+PD+ +R N+ + ++D+ VP+++R E FD R KY LA ++ + TV A V+G LG+WD +N L+ + +++ + R+ + + IY EHVS Sbjct: 136 GQSNHFLRSGSFTRFCDWRFIHRARLDVLPLN-AAKRWQRGMDKRCRRCGSDLETLPHVLSHCGPHSAARQKRHNNIQDRLVKAASRCPGTISVNQTVVGVRGPDAALRPDIVVRDDVNRRVTIVDVAVPFENRLEAFDGVREAKIAKYTPLARQLTDS-GYTVTVEAFVVGALGAWDPRNERVLSLLSISRYYAILMRRLMVSDTIRWSRDIYVEHVS 352
BLAST of SMED30016440 vs. TrEMBL
Match: B4P1Z7 (Uncharacterized protein OS=Drosophila yakuba OX=7245 GN=Dyak\GE12380 PE=4 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 2.888e-15 Identity = 64/223 (28.70%), Postives = 106/223 (47.53%), Query Frame = -1 Query: 174 LLSENKISSFGNLDAMLRARNNILNLNYSAYHLKNNIGTKY-RLCHIDEETQAYVFNHCQAKPNARRIKHENVLISIVAYLEKIGFEIDVEKSPKYLPNPTKLKPDMTIRSRRNKDIHVLDLKVPYD-SREGFDKARGN-YVKYKDLALEIGQAFNEKATVSAIVIGCLGSWDKKNNAPLAKIGLTKAEIQSLARIACAKAVTACYHIYREHVSYNISGFALP 833 + + + F + + RAR +L LN + ++ G K R+C E+ +V HC NA + +H V+ + ++G + + L+PD+ R R++ I ++D+ VP++ E FD ARG KY+ LA E +A + + A ++G LGSWD KN L +G+++ + R+ A + IY EHVS I F LP Sbjct: 141 FIRDGSFTRFADWRFIHRARLGVLPLNGA---IRWGSGDKRCRVCGYQLESVPHVLCHCMHHSNAMQQRHNAVMDRLAKAGSRLGTPRVNCRVEGVAEDMAALRPDLVWRDERSRKIVIVDVTVPFENGAEAFDNARGEKEEKYRPLA-EALRAMGYQVKLEAFIVGALGSWDPKNERVLKTLGVSRFYAGLMRRLMVADTIRWSRDIYVEHVS-GIRQFTLP 358
BLAST of SMED30016440 vs. TrEMBL
Match: B4NX04 (Uncharacterized protein OS=Drosophila yakuba OX=7245 GN=Dyak\GE18776 PE=4 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.405e-14 Identity = 63/223 (28.25%), Postives = 106/223 (47.53%), Query Frame = -1 Query: 174 LLSENKISSFGNLDAMLRARNNILNLNYSAYHLKNNIGTKY-RLCHIDEETQAYVFNHCQAKPNARRIKHENVLISIVAYLEKIGFEIDVEKSPKYLPNPTKLKPDMTIRSRRNKDIHVLDLKVPYD-SREGFDKARGN-YVKYKDLALEIGQAFNEKATVSAIVIGCLGSWDKKNNAPLAKIGLTKAEIQSLARIACAKAVTACYHIYREHVSYNISGFALP 833 + + + F + + RAR +L +N + ++ G K R+C E+ +V HC NA + +H V+ + ++G + + L+PD+ R R++ I ++D+ VP++ E FD ARG KY+ LA E +A + + A ++G LGSWD KN L +G+++ + R+ A + IY EHVS I F LP Sbjct: 242 FMRDGSFTRFADWRFIHRARLGVLPVNGA---IRWGSGDKRCRVCGYQLESVPHVLCHCMHHSNAMQQRHNAVMDRLAKAGSRLGTPRVNCRVEGVAEDMAALRPDLVWRDERSRKIVIVDVTVPFENGAEAFDNARGEKEEKYRPLA-EALRAMGYQVKLEAFIVGALGSWDPKNERVLKTLGVSRFYAGLMRRLMVADTIRWSRDIYVEHVS-GIRQFTLP 459
BLAST of SMED30016440 vs. Planmine SMEST
Match: SMESG000052713.1 (SMESG000052713.1) HSP 1 Score: 394.815 bits (1013), Expect = 5.266e-131 Identity = 248/285 (87.02%), Postives = 255/285 (89.47%), Query Frame = -1 Query: 1410 MSGLSNLPRIPRLSPSVIAASQRLESLEREFATLREIYQRVKSTWSSPESTKSLFQKISRLTRARDDLIIENRGQRLTIAEQSDALRKIFTENELRARLSSRSWTREIDIIPAQRLTNNPETVPSIAPTVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQESVRTNDPPPAYSEFEFQTTDPDILYAPTITINQAPPQVYIDLVADEIELPDVARALESLLLTPEEIAVLTGRLPSTTCPEEHSMSASGAINPNPPSSNPRQLKRRRFPVDIDSNN 2264 MSGLSNLPRIPRLSPSVIAASQRLESLEREFATLRE YQRVKSTWSSPESTKSLFQKISRLTRARDDLIIENRGQRLTIAEQSDALRKIFTENELRARLSSRSWTREIDIIPAQRLTNNPETVPSIAPTVSATTANPTNPTRRRPNPNRRRCERRRAEANLL P YSEFEFQTTDPDILYAPTITIN+ PP VYIDLVADEIELPDV+RALESLLLTPEEIA+LT +LPST+ PEE S SAS AI+P PSSN RQ KRRR PVDIDS+N Sbjct: 1 MSGLSNLPRIPRLSPSVIAASQRLESLEREFATLREKYQRVKSTWSSPESTKSLFQKISRLTRARDDLIIENRGQRLTIAEQSDALRKIFTENELRARLSSRSWTREIDIIPAQRLTNNPETVPSIAPTVSATTANPTNPTRRRPNPNRRRCERRRAEANLL----------------PIYSEFEFQTTDPDILYAPTITINRVPPPVYIDLVADEIELPDVSRALESLLLTPEEIAILTRQLPSTSRPEEPSTSASRAISPALPSSNSRQPKRRRLPVDIDSDN 269
BLAST of SMED30016440 vs. Planmine SMEST
Match: SMESG000069750.1 (SMESG000069750.1) HSP 1 Score: 391.734 bits (1005), Expect = 1.573e-129 Identity = 238/285 (83.51%), Postives = 250/285 (87.72%), Query Frame = -1 Query: 1410 MSGLSNLPRIPRLSPSVIAASQRLESLEREFATLREIYQRVKSTWSSPESTKSLFQKISRLTRARDDLIIENRGQRLTIAEQSDALRKIFTENELRARLSSRSWTREIDIIPAQRLTNNPETVPSIAPTVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQESVRTNDPPPAYSEFEFQTTDPDILYAPTITINQAPPQVYIDLVADEIELPDVARALESLLLTPEEIAVLTGRLPSTTCPEEHSMSASGAINPNPPSSNPRQLKRRRFPVDIDSNN 2264 M GLSNLPRIPRLSPSV A SQRLESLEREFATL E YQRVKSTWSSPE+TK LFQKI+RLTRARDDLIIENRGQRLTIAEQS ALRKIFTENELRARLSSRSW R+IDIIPA+RLTN+ E+ SI P VS TT PTNP+RRRPN N R ERRRAEANLLRANER Q S ND PPAY+EFEFQTTDPDILYAPTITIN+APPQVYIDLVADEIELPDV RALE LLLTPEEIAVLTGRLPSTT PEE SMSASG I+P P +SNPRQ KRRR PVDIDS+N Sbjct: 1 MLGLSNLPRIPRLSPSVTAVSQRLESLEREFATLWEKYQRVKSTWSSPETTKGLFQKITRLTRARDDLIIENRGQRLTIAEQSVALRKIFTENELRARLSSRSWARDIDIIPAKRLTNDSESTSSIVPPVSVTTVTPTNPSRRRPNRNSRHRERRRAEANLLRANERVQGSSPMNDLPPAYTEFEFQTTDPDILYAPTITINRAPPQVYIDLVADEIELPDVGRALERLLLTPEEIAVLTGRLPSTTGPEEPSMSASGEISPTPSNSNPRQPKRRRLPVDIDSDN 285
BLAST of SMED30016440 vs. Planmine SMEST
Match: SMESG000061002.1 (SMESG000061002.1) HSP 1 Score: 334.724 bits (857), Expect = 3.191e-107 Identity = 204/310 (65.81%), Postives = 233/310 (75.16%), Query Frame = -1 Query: 1419 SEFA*QFEISRLSSVTFYQSNISIPKAMSGLSNLPRIPRLSPSVIAASQRLESLEREFATLREIYQRVKSTWSSPESTKSLFQKISRLTRARDDLIIENRGQRLTIAEQSDALRKIFTENELRARLSSRSWTREIDIIPAQRLTNNPETV-PSIAPTVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQESVRTNDPPPAYSEFEFQTTDPDILYAPTITINQAPPQVYIDLVADEIELPDVARALESLLLTPEEIAVLTGRLPSTTCPEEHSMSASGAINPNPPSSNPRQLKRRRFPVDID 2345 SE +FEI L V + +S K M GLS+LPRIPRL PS SQRLE LER+FATL+E YQRVKSTWSSPE+TKSLFQKISRL+RA+DDL+IEN+GQR+TIAEQS ALR+IFTENELRARL SRS REID+IPAQRLTN+P ++ P I P +A T P R RR AEANLLRANER Q V T+DP PAY+EF+F T DPDILYAP+ITIN+APPQVYIDLV DE ELPDV+R LE+ LLTPEEIAVLTG+LPSTT PEE S S A++PN PR+ KRR PVDID Sbjct: 11 SEVTQRFEILLLLFVISLKLIVSSSKMMPGLSSLPRIPRLLPSATVTSQRLEILERDFATLKEKYQRVKSTWSSPEATKSLFQKISRLSRAKDDLVIENQGQRITIAEQSAALRRIFTENELRARLPSRSCAREIDVIPAQRLTNDPGSISPIILPANTA-----TKNQTGAPRRRPNRNRRRLAEANLLRANERIQGLVPTSDPSPAYTEFDFPTADPDILYAPSITINRAPPQVYIDLVTDETELPDVSRVLETQLLTPEEIAVLTGQLPSTTHPEEPSTSIQEAVHPNSSDPIPRRPKRRCLPVDID 315
BLAST of SMED30016440 vs. Planmine SMEST
Match: SMESG000002079.1 (SMESG000002079.1) HSP 1 Score: 333.954 bits (855), Expect = 3.860e-105 Identity = 168/196 (85.71%), Postives = 176/196 (89.80%), Query Frame = -1 Query: 192 NNILN-LNYSAYHLKNNIGTKYRLCHIDEETQAYVFNHCQAKPNARRIKHENVLISIVAYLEKIGFEIDVEKSPKYLPNPTKLKPDMTIRSRRNKDIHVLDLKVPYDSREGFDKAR-GNYVKYKDLALEIGQAFNEKATVSAIVIGCLGSWDKKNNAPLAKIGLTKAEIQSLARIACAKAVTACYHIYREHVSYNI 773 ++ILN Y+ LKNNI TK RLCH+DEETQA+VFNH AKPNARRIKHENVLISIV YLEKIGFEID+EKS KYL N TKLKPDMTIRS+RNKDIHVLDLKVPYDS EGFDKAR GNYVKYKDLALEIGQAFNEKATVSAIVIGCLG+WDKKNNAPLAKIGL KAEIQSLA IAC KAV ACYHIYREHVSYNI Sbjct: 23 SDILNDAQYNFLRLKNNISTKCRLCHLDEETQAHVFNHWLAKPNARRIKHENVLISIVTYLEKIGFEIDLEKSLKYLSNTTKLKPDMTIRSKRNKDIHVLDLKVPYDSGEGFDKAREGNYVKYKDLALEIGQAFNEKATVSAIVIGCLGTWDKKNNAPLAKIGLNKAEIQSLAWIACPKAVIACYHIYREHVSYNI 218 HSP 2 Score: 198.364 bits (503), Expect = 3.280e-55 Identity = 120/222 (54.05%), Postives = 154/222 (69.37%), Query Frame = -1 Query: 1638 FYQSNIS--IPKAMSGLSNLPRIPRLSPSVIAASQRLESLEREFATLREIYQRVKSTWSSPESTKSLFQKISRLTRARDDLIIENRGQRLTIAEQSDALRKIFTENELRARLSSRSWTREIDIIPAQRLTNNPETVPSIAPTVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQESVRTNDPPPAYSEFEFQTTDPDILYAPTITINQAPPQVY 2297 Y+ ++S IP + + LP+IPRLS S+IA QRLE LE++ A L+ YQ++K TW SPE+T+ LFQKISRL+RARDDL++E+R QR+ IAEQSDALR+IFTE ELRAR+ SW + +DIIPAQ L +NP P+I P+ + + +RRPN N RR +RRRAEA LL A ER R NDPPPAY EFEF D D +YAP+I + PP +Y Sbjct: 209 IYREHVSYNIPHRTTNTTELPKIPRLSRSIIATRQRLEQLEKDHAVLQTKYQKLKGTWRSPEATRKLFQKISRLSRARDDLVVESRSQRILIAEQSDALRRIFTEAELRARVPGCSWAQSLDIIPAQHLFSNPIPPPTIEPSQNIRAESRPGIAQRRPNRNHRRHKRRRAEAYLLSATERMGTGSRENDPPPAYQEFEFPEFDQDNIYAPSIINHPQPPSIY 430
BLAST of SMED30016440 vs. Planmine SMEST
Match: SMESG000050283.1 (SMESG000050283.1) HSP 1 Score: 328.946 bits (842), Expect = 5.214e-105 Identity = 195/293 (66.55%), Postives = 218/293 (74.40%), Query Frame = -1 Query: 1419 FYQSNISIPKAMSGLSNLPRIPRLSPSVIAASQRLESLEREFATLREIYQRVKSTWSSPESTKSLFQKISRLTRARDDLIIENRGQRLTIAEQSDALRKIFTENELRARLSSRSWTREIDIIPAQRLTNNPETVPSIAPTVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQESVRTNDPPPAYSEFEFQTTDPDILYAPTITINQAPPQVYIDLVADEIELPDVARALESLLLTPEEIAVLTGRLPSTTCPEEHSMSASGAINPNPPSSNPRQLKRRRFPVDID 2297 F + +S M LS+LPRIPRL PS IAASQRLE LER+FATL+E YQRVK+TWSSPE+TKSLFQ ISRL+RARDDLIIENRGQR+TIAEQS A RKIFTENELRARLSSRSW REIDIIPAQRL N+P++ I P SA + + R R + RTNDPPPAYSEFEFQTTD DILYAPTITIN+APP VYIDLVADE+ELPDV+RALESLLLTPEEI VLTG+LPST PE+ S SA G +PN SS+ R+ KRR PVDID Sbjct: 34 FLKLILSSYNVMPELSSLPRIPRLLPSAIAASQRLEVLERKFATLQEKYQRVKNTWSSPETTKSLFQNISRLSRARDDLIIENRGQRITIAEQSVASRKIFTENELRARLSSRSWAREIDIIPAQRLANDPDSTSPIVPPNSA----------------TTGNQANTSRRRPNRNRRRRERRPRTNDPPPAYSEFEFQTTDSDILYAPTITINRAPPHVYIDLVADEMELPDVSRALESLLLTPEEITVLTGQLPSTNRPEKPSASAQGVTSPNSSSSSLRRPKRRCLPVDID 310 The following BLAST results are available for this feature:
BLAST of SMED30016440 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30016440 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30016440 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30016440 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30016440 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30016440 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30016440 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30016440 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30016440 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30016440 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30016440 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30016440 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30016440 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30016440 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30016440 ID=SMED30016440|Name=SMED30016440|organism=Schmidtea mediterranea sexual|type=transcript|length=2789bpback to top protein sequence of SMED30016440-orf-1 >SMED30016440-orf-1 ID=SMED30016440-orf-1|Name=SMED30016440-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=236bp MVSIGVGENKILLSENKISSFGNLDAMLRARNNILNLNYSAYHLKNNIGTback to top protein sequence of SMED30016440-orf-2 >SMED30016440-orf-2 ID=SMED30016440-orf-2|Name=SMED30016440-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=286bp MSGLSNLPRIPRLSPSVIAASQRLESLEREFATLREIYQRVKSTWSSPESback to top Annotated Terms
The following terms have been associated with this transcript:
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