General transcription factor II-I repeat domain-containing protein 2
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30016423 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Homology
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Zebrafish
Match: AL928808.1 (pep chromosome:GRCz11:20:17257101:17259573:-1 gene:ENSDARG00000101333.2 transcript:ENSDART00000166397.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AL928808.1) HSP 1 Score: 72.0182 bits (175), Expect = 7.821e-14 Identity = 51/162 (31.48%), Postives = 79/162 (48.77%), Query Frame = 1 Query: 97 NTKRKIADEHRNFQENWELEYFCSEVNDKIICLICNSAIVH--QSYLMLXXXXXXXXXXXXXTKD**DSKLREFKL-----GLKKQQSMITKVSRESEAVVHTSYFLSQLITKHSKPFTKGDFIKGCIRNAAEIVYPD--------KEMSLYRNIAVERVTD 537 KRK DE R F WE YF E N K CLIC +++ H S L + + + K S+LR+ K+ +KQ + K S+ SE V SY L+ I + KP+ +G+F+K C+ +A I+ P+ K++ L R+ +R++D Sbjct: 8 TAKRKYEDERRTFLSEWEDLYFFVERNGKPFCLICQTSLSHFKASNLERHFTSLHSAVAREFPK---GSELRKHKVKTLKGQAEKQTQLFRKFSKHSETVTLASYQLAWNIARAKKPYLEGEFVKKCLSDAVAILCPENENLKRSVKDLQLSRHTVEQRISD 166
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Xenopus
Match: spag1 (sperm associated antigen 1 [Source:Xenbase;Acc:XB-GENE-853609]) HSP 1 Score: 61.6178 bits (148), Expect = 3.370e-10 Identity = 40/131 (30.53%), Postives = 62/131 (47.33%), Query Frame = 1 Query: 103 KRKIADEHRNFQENWELEYFCSEVNDKIICLICNSAI-------VHQSYLMLXXXXXXXXXXXXXTKD**DSKLREFKLGLKKQQSMITKVSRESEAVVHTSYFLSQLITKHSKPFTKGDFIKGCIRNAAE 474 KRKI E+R FQE WE EYF + DK CL+C I V + Y L+ + + +++ K L KQ+++ + V+ +A V S+ +++ I K PF+ G +K C AE Sbjct: 17 KRKIDSENREFQEKWEEEYFFGKNKDKPQCLVCAQTISSCKEYNVKRHYTTLHGAKYAKYTGEARL-----TIIKDLKSKLCKQKNIFSAVTTTQKAAVKASFLVAEEIAKRKYPFSSGTLVKTCALKMAE 142
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Xenopus
Match: ENSXETT00000016563.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:4:37379994:37381838:-1 gene:ENSXETG00000009412.1 transcript:ENSXETT00000016563.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 61.6178 bits (148), Expect = 3.370e-10 Identity = 40/131 (30.53%), Postives = 62/131 (47.33%), Query Frame = 1 Query: 103 KRKIADEHRNFQENWELEYFCSEVNDKIICLICNSAI-------VHQSYLMLXXXXXXXXXXXXXTKD**DSKLREFKLGLKKQQSMITKVSRESEAVVHTSYFLSQLITKHSKPFTKGDFIKGCIRNAAE 474 KRKI E+R FQE WE EYF + DK CL+C I V + Y L+ + + +++ K L KQ+++ + V+ +A V S+ +++ I K PF+ G +K C AE Sbjct: 17 KRKIDSENREFQEKWEEEYFFGKNKDKPQCLVCAQTISSCKEYNVKRHYTTLHGAKYAKYTGEARL-----TIIKDLKSKLCKQKNIFSAVTTTQKAAVKASFLVAEEIAKRKYPFSSGTLVKTCALKMAE 142
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Xenopus
Match: ENSXETT00000028445.1 (general transcription factor II-I repeat domain-containing protein 2-like [Source:NCBI gene;Acc:101734469]) HSP 1 Score: 54.299 bits (129), Expect = 7.841e-8 Identity = 37/134 (27.61%), Postives = 69/134 (51.49%), Query Frame = 1 Query: 106 RKIADEHRNFQENWELEYFCSEVNDKIICLICNS--AIVHQSYLMLXXXXXXXXXXXXXTKD**DSKLREFKLGLKKQQSMITKVSRESEAVVHTSYFLSQLITKHSKPFTKGDFIKGCIRNAAEIVYPDKEMS 501 RK+ E+R+F+E WEL+YF + N K +CL+C+ A+ + + + I + + T D + L E + L KQ+++ + + A + S+ + + I K + F D +K C A V+ ++EM+ Sbjct: 7 RKVDSENRSFKERWELDYFFVKCNGKPLCLLCSQILAVCKEYNVKRHYISLHEKTYSQYTGDHRMAILNELRSKLNKQETVTSIETATDTAALKASFIICEEIVKRKQAFDSVDVVKECAVKMAR-VFGNEEMA 139
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. TrEMBL
Match: A0A087T5N2 (General transcription factor II-I repeat domain-containing protein 2 (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_26612 PE=4 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 3.046e-51 Identity = 90/163 (55.21%), Postives = 107/163 (65.64%), Query Frame = 1 Query: 67 SMPLSTPNGSNTKRKIADEHRNFQENWELEYFCSEVNDKIICLICNSAI-VHQSYLMLXXXXXXXXXXXXXTKD**DSKLREFKLGLKKQQSMITKVSRESEAVVHTSYFLSQLITKHSKPFTKGDFIKGCIRNAAEIVYPD-----KEMSLYRNIAVERVTD 537 SM +S P+GS KRKIADEHR FQ WELEYFC E+ DKIICLICN+ I V + Y + + + + KL+E KLG+KKQQSM +KV +ESEA VH SY LS+LI KHSKPFT GDFIK C+ A EIV P + +SL RN ERVTD Sbjct: 6 SMSISKPSGSKIKRKIADEHRIFQVKWELEYFCCEIKDKIICLICNNTINVPKLYNIKRHYEQHKSKYNNYEGLMREEKLKELKLGVKKQQSMFSKVLQESEAAVHASYVLSELIAKHSKPFTDGDFIKECLMKAGEIVCPGNVKAFQSISLSRNTVAERVTD 168 HSP 2 Score: 66.2402 bits (160), Expect = 3.046e-51 Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 3 Query: 633 LLLRECDKDFNIYEELLELVLIHGTTTAENIFNCVYELLQK*NLP 767 + LR CDK+FNI+EELLEL+ + GTTT E+IF CV+ LLQK NLP Sbjct: 205 VFLRSCDKNFNIFEELLELIPMPGTTTGEDIFTCVFGLLQKYNLP 249
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. TrEMBL
Match: A0A087TLA5 (General transcription factor II-I repeat domain-containing protein 2 (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_18867 PE=4 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 4.515e-51 Identity = 90/163 (55.21%), Postives = 107/163 (65.64%), Query Frame = 1 Query: 67 SMPLSTPNGSNTKRKIADEHRNFQENWELEYFCSEVNDKIICLICNSAI-VHQSYLMLXXXXXXXXXXXXXTKD**DSKLREFKLGLKKQQSMITKVSRESEAVVHTSYFLSQLITKHSKPFTKGDFIKGCIRNAAEIVYPD-----KEMSLYRNIAVERVTD 537 SM +S P+GS KRKIADEHR FQ WELEYFC E+ DKIICLICN+ I V + Y + + + + KL+E KLG+KKQQSM +KV +ESEA VH SY LS+LI KHSKPFT GDFIK C+ A EIV P + +SL RN ERVTD Sbjct: 26 SMSISKPSGSKIKRKIADEHRIFQVKWELEYFCCEIKDKIICLICNNTINVPKLYNIKRHYEQHKSKYNNYEGLMREEKLKELKLGVKKQQSMFSKVLQESEAAVHASYVLSELIAKHSKPFTDGDFIKECLMKAGEIVCPGNVKAFQSISLSRNTVAERVTD 188 HSP 2 Score: 66.2402 bits (160), Expect = 4.515e-51 Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 3 Query: 633 LLLRECDKDFNIYEELLELVLIHGTTTAENIFNCVYELLQK*NLP 767 + LR CDK+FNI+EELLEL+ + GTTT E+IF CV+ LLQK NLP Sbjct: 225 VFLRSCDKNFNIFEELLELIPMPGTTTGEDIFTCVFGLLQKYNLP 269
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. TrEMBL
Match: A0A087THJ5 (General transcription factor II-I repeat domain-containing protein 2 (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_22333 PE=4 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 4.642e-51 Identity = 90/163 (55.21%), Postives = 107/163 (65.64%), Query Frame = 1 Query: 67 SMPLSTPNGSNTKRKIADEHRNFQENWELEYFCSEVNDKIICLICNSAI-VHQSYLMLXXXXXXXXXXXXXTKD**DSKLREFKLGLKKQQSMITKVSRESEAVVHTSYFLSQLITKHSKPFTKGDFIKGCIRNAAEIVYPD-----KEMSLYRNIAVERVTD 537 SM +S P+GS KRKIADEHR FQ WELEYFC E+ DKIICLICN+ I V + Y + + + + KL+E KLG+KKQQSM +KV +ESEA VH SY LS+LI KHSKPFT GDFIK C+ A EIV P + +SL RN ERVTD Sbjct: 103 SMSISKPSGSKIKRKIADEHRIFQVKWELEYFCCEIKDKIICLICNNTINVPKLYNIKRHYEQHKSKYNNYEGLMREEKLKELKLGVKKQQSMFSKVLQESEAAVHASYVLSELIAKHSKPFTDGDFIKECLMKAGEIVCPGNVKAFQSISLSRNTVAERVTD 265 HSP 2 Score: 66.2402 bits (160), Expect = 4.642e-51 Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 3 Query: 633 LLLRECDKDFNIYEELLELVLIHGTTTAENIFNCVYELLQK*NLP 767 + LR CDK+FNI+EELLEL+ + GTTT E+IF CV+ LLQK NLP Sbjct: 302 VFLRSCDKNFNIFEELLELIPMPGTTTGEDIFTCVFGLLQKYNLP 346
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. TrEMBL
Match: A0A087TNT9 (General transcription factor II-I repeat domain-containing protein 2 (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_12510 PE=4 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 5.323e-51 Identity = 90/163 (55.21%), Postives = 107/163 (65.64%), Query Frame = 1 Query: 67 SMPLSTPNGSNTKRKIADEHRNFQENWELEYFCSEVNDKIICLICNSAI-VHQSYLMLXXXXXXXXXXXXXTKD**DSKLREFKLGLKKQQSMITKVSRESEAVVHTSYFLSQLITKHSKPFTKGDFIKGCIRNAAEIVYPD-----KEMSLYRNIAVERVTD 537 SM +S P+GS KRKIADEHR FQ WELEYFC E+ DKIICLICN+ I V + Y + + + + KL+E KLG+KKQQSM +KV +ESEA VH SY LS+LI KHSKPFT GDFIK C+ A EIV P + +SL RN ERVTD Sbjct: 38 SMSISKPSGSKIKRKIADEHRIFQVKWELEYFCCEIKDKIICLICNNTINVPKLYNIKRHYEQHKSKYNNYEGLMREEKLKELKLGVKKQQSMFSKVLQESEAAVHASYVLSELIAKHSKPFTDGDFIKECLMKAGEIVCPGNVKAFQSISLSRNTVAERVTD 200 HSP 2 Score: 65.855 bits (159), Expect = 5.323e-51 Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 3 Query: 633 LLLRECDKDFNIYEELLELVLIHGTTTAENIFNCVYELLQK*NLP 767 + LR CDK+FNI+EELLEL+ + GTTT E+IF CV+ LLQK NLP Sbjct: 237 VFLRSCDKNFNIFEELLELIPMPGTTTGEDIFTCVFGLLQKYNLP 281
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. TrEMBL
Match: A0A087U850 (General transcription factor II-I repeat domain-containing protein 2 (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_09267 PE=4 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 6.730e-51 Identity = 89/162 (54.94%), Postives = 106/162 (65.43%), Query Frame = 1 Query: 70 MPLSTPNGSNTKRKIADEHRNFQENWELEYFCSEVNDKIICLICNSAI-VHQSYLMLXXXXXXXXXXXXXTKD**DSKLREFKLGLKKQQSMITKVSRESEAVVHTSYFLSQLITKHSKPFTKGDFIKGCIRNAAEIVYPD-----KEMSLYRNIAVERVTD 537 M +S P+GS KRKIADEHR FQ WELEYFC E+ DKIICLICN+ I V + Y + + + + KL+E KLG+KKQQSM +KV +ESEA VH SY LS+LI KHSKPFT GDFIK C+ A EIV P + +SL RN ERVTD Sbjct: 1 MSISKPSGSKIKRKIADEHRIFQVKWELEYFCCEIKDKIICLICNNTINVPKLYNIKRHYEQHKSKYNNYEGLMREEKLKELKLGVKKQQSMFSKVLQESEAAVHASYVLSELIAKHSKPFTDGDFIKECLMKAGEIVCPGNVKAFQSISLSRNTVAERVTD 162 HSP 2 Score: 66.6254 bits (161), Expect = 6.730e-51 Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 3 Query: 633 LLLRECDKDFNIYEELLELVLIHGTTTAENIFNCVYELLQK*NLP 767 + LR CDK+FNI+EELLEL+ + GTTT E+IF CV+ LLQK NLP Sbjct: 199 VFLRSCDKNFNIFEELLELIPMPGTTTGEDIFTCVFGLLQKYNLP 243
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Cavefish
Match: ENSAMXT00000030525.1 (pep primary_assembly:Astyanax_mexicanus-2.0:1:12992682:12994541:1 gene:ENSAMXG00000035573.1 transcript:ENSAMXT00000030525.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 102.834 bits (255), Expect = 6.951e-27 Identity = 63/168 (37.50%), Postives = 90/168 (53.57%), Query Frame = 1 Query: 67 SMPLSTPNGSNTKRKIADEHRNFQENWELEYFCSEVNDKIICLICNSAI-VHQSY-LMLXXXXXXXXXXXXXTKD**DSKLREFKLGLKKQQSMITKVSRESEAVVHTSYFLSQLITKHSKPFTKGDFIKGCIRNAAEIVYPDKE-----MSLYRNIAVERVTDK*SD 549 +M S P KRKI DEHR FQE WE+++F E CLIC + VH+ Y L + + D +++ K L +QQ K ++E++A V SY +S++I K KPFT+G+F+K CI AA IV P+K+ +SL N ER++D SD Sbjct: 52 NMSFSKPA---VKRKICDEHRQFQEKWEVQFFFVEHRGIPTCLICTEKVAVHKEYNLKRHYTTRHAEEYAKYQGDERANRVANLKTCLLRQQDFFKKATKENDAAVEASYVVSEMIAKAGKPFTEGEFVKKCILQAASIVCPEKKGQFSNISLSANTVAERISDLSSD 216 HSP 2 Score: 36.5798 bits (83), Expect = 6.951e-27 Identity = 16/45 (35.56%), Postives = 29/45 (64.44%), Query Frame = 3 Query: 633 LLLRECDKDFNIYEELLELVLIHGTTTAENIFNCVYELLQK*NLP 767 + +R D +F + EELL ++ +HG TTA+ IF+ + + ++ LP Sbjct: 249 IYVRGVDDNFEVTEELLTVIPMHGQTTAQEIFHQLCDAIENAGLP 293
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Cavefish
Match: ENSAMXT00000035253.1 (general transcription factor II-I repeat domain-containing protein 2B-like [Source:NCBI gene;Acc:111191579]) HSP 1 Score: 66.6254 bits (161), Expect = 2.659e-16 Identity = 45/150 (30.00%), Postives = 74/150 (49.33%), Query Frame = 1 Query: 103 KRKIADEHRNFQENWELEYFCSEVNDKIICLICNSAI--VHQSYLMLXXXXXXXXXXXXXTKD**DSKLREFKLGLKKQQSMITKVSRESEAVVHTSYFLSQLITKHSKPFTKGDFIKGCIRNAAEIVYPD-----KEMSLYRNIAVERV 531 KRK+ + R FQ+ WE EY ++ +CL+C A+ + + L + + + +E K LK QQ++ TK + ++ A V S+ +++ I + SK F+ G F+K C+ E V PD K +SL RN +RV Sbjct: 4 KRKVDADGRLFQQRWEGEYMFVLQGERPVCLLCCEAVSVIKEYNLRRHFDTKHGAKYGKASLQEKQQIAQELKDKLKSQQNLFTKATAKNSAAVKASFIVAEEIARASKYFSGGAFLKQCMLKVCEQVCPDQIQTFKNVSLSRNTIADRV 153 HSP 2 Score: 36.965 bits (84), Expect = 2.659e-16 Identity = 14/41 (34.15%), Postives = 27/41 (65.85%), Query Frame = 3 Query: 633 LLLRECDKDFNIYEELLELVLIHGTTTAENIFNCVYELLQK 755 + +R D ++ E+LL++ +HGTTT ++IF+ V + + K Sbjct: 192 IFIRGVKSDLSVTEDLLDVAAMHGTTTGQDIFDAVEKSVSK 232
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Cavefish
Match: ENSAMXT00000052542.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000549.1:35642:40620:1 gene:ENSAMXG00000033785.1 transcript:ENSAMXT00000052542.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 70.4774 bits (171), Expect = 1.751e-13 Identity = 42/149 (28.19%), Postives = 75/149 (50.34%), Query Frame = 1 Query: 94 SNTKRKIADEHRNFQENWELEYFCSEVNDKII-CLICNSAI-VHQSYLMLXXXXXXXXXXXXXTKD**DSKLREFKLGLKKQQSMITKVSRESEAVVHTSYFLSQLITKHSKPFTKGDFIKGCIRNAAEIVYPDKEMSLYRNIAVERVT 534 ++ KRK+ EHR F W +YF E + + CL+C + V + Y + + + + K+ K L QQ + K +ESEA SY ++ L+ K ++PF G+F+K C+ A +++ P+ + ++NI++ R T Sbjct: 3 TSKKRKVDLEHRKFNPEWTSKYFFYETSSAVFSCLVCLECVAVAKEYNLRRHYETKHPKLADLQGEDRKQKIEALKKQLVSQQGVFEKRRKESEACTIASYRIANLVAKSARPFIDGEFVKDCMLEACDVICPEAK-DAFKNISLSRTT 150
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Cavefish
Match: ENSAMXT00000038753.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000657.1:4925:12560:-1 gene:ENSAMXG00000034887.1 transcript:ENSAMXT00000038753.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 69.3218 bits (168), Expect = 5.101e-13 Identity = 46/152 (30.26%), Postives = 77/152 (50.66%), Query Frame = 1 Query: 103 KRKIADEHRNFQENWELEYFCSEVNDKIICLICNSAI--VHQSYLMLXXXXXXXXXXXXXTKD**DSKLREFKLGLKKQQSMITKVSRESEAVVHTSYFLSQLITKHSKPFTKGDFIKGCIRNAAEIVYPD-----KEMSLYRNIAVERVTD 537 KRK+ + R FQ+ WE EY ++ +CL+C A+ + + L + + + +E K LK QQ++ TK + ++ A V S+ +++ I + SK F++G F+K C+ E V PD K +SL RN V+RV + Sbjct: 4 KRKVDADGRLFQQRWEGEYMFVLQGERPVCLLCCEAVSVIKEYNLRRHFDTKHGAKYGKASLQEKQQIAQELKDKLKSQQNLFTKATAKNSASVKASFIVAEEIARASKSFSEGAFLKQCMLKVCEQVCPDQIQTFKNVSLSRNTIVDRVKE 155
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Cavefish
Match: ENSAMXT00000048309.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000491.1:94927:99076:1 gene:ENSAMXG00000033081.1 transcript:ENSAMXT00000048309.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 45.8246 bits (107), Expect = 7.194e-10 Identity = 37/156 (23.72%), Postives = 66/156 (42.31%), Query Frame = 1 Query: 109 KIADEHRNFQENWELEYFCSEVNDKIICLICNSAI-------VHQSYLMLXXXXXXXXXXXXXTKD**DSKLREFKLGLKKQQSMITKVSRESEAVVHTSYFLSQLITKHSKPFTKGDFIKGCIRNAAE------IVYPDKEMSLYRNIAVERVTD 537 K+ E+R FQ WE EY +E K +CL+C + + + Y L+ + + + + + K + KQQ TK + E+ + SY ++ + + KP + G+ +K C A+ I + +SL R R+ D Sbjct: 36 KLDRENRIFQTKWEEEYLFTEFKGKPMCLVCLETLSALKDYNLSRHYSTLHKVKYEKYTGAARA-----AVVADLKSKVGKQQHFFTKATTSQESAITASYDVALELARAKKPLSDGEVVKRCAVKMAKAFGDNNIAKNFETVSLSRRTVTRRIFD 186 HSP 2 Score: 36.1946 bits (82), Expect = 7.194e-10 Identity = 18/67 (26.87%), Postives = 34/67 (50.75%), Query Frame = 3 Query: 543 IRLKQIHFVSKHSPLPVTRVRTLGAYPSSLLLLRECDKDFNIYEELLELVLIHGTTTAENIFNCVYE 743 +++KQ+ ++ L + + L+ R D F+++ ELL+L +H TT +IFN Y+ Sbjct: 193 VKMKQVMQDCQYFSLALDESTDVTDVSQLLVFARTIDNAFDVHRELLKLASLHDTTKGSDIFNRRYQ 259
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Medaka
Match: ENSORLT00000033014.1 (general transcription factor II-I repeat domain-containing protein 2 [Source:NCBI gene;Acc:101164918]) HSP 1 Score: 79.7221 bits (195), Expect = 2.147e-22 Identity = 48/151 (31.79%), Postives = 76/151 (50.33%), Query Frame = 1 Query: 103 KRKIADEHRNFQENWELEYFCSEVNDKIICLICNSAI-VHQSYLMLXXXXXXXXXXXXXTKD**DSKLREFKLGLKKQQSMITKVSRESEAVVHTSYFLSQLITKHSKPFTKGDFIKGCIRNAAEIVYPDKE-----MSLYRNIAVERVTD 537 KRK+ E R FQ+ W+L YF +++ + +CLIC + V + + + + S +T KL + + L QQS+ S + SY ++ LI KH KPFT G+FIK C+ E + P+K+ + L N V+R+ D Sbjct: 7 KRKVDYEGRRFQDRWKLAYFFTDIQNNCVCLICQDTVAVFKEFNIRRHYQTKHASYDNLTGVQRREKLEQLESALTTQQSICAIKSEPDDNTTQASYEVATLIAKHCKPFTDGEFIKDCLMKIVETICPEKKHEFANVCLDHNTVVQRIED 157 HSP 2 Score: 36.965 bits (84), Expect = 2.147e-22 Identity = 19/46 (41.30%), Postives = 27/46 (58.70%), Query Frame = 3 Query: 630 LLLLRECDKDFNIYEELLELVLIHGTTTAENIFNCVYELLQK*NLP 767 L+ LR D+D N+ EELLEL + G TT ++F + + NLP Sbjct: 193 LIFLRGVDRDMNVSEELLELQGLTGQTTGTDLFVSLCSAVDDMNLP 238 HSP 3 Score: 27.7202 bits (60), Expect = 2.147e-22 Identity = 14/38 (36.84%), Postives = 21/38 (55.26%), Query Frame = 2 Query: 536 ISDQIKANSFCFEAFSIACD*STNIGSISQFTAFITRV 649 I Q++ FE FS+ACD ST+ + +Q F+ V Sbjct: 162 IKRQLEVKGAKFEFFSLACDESTDASNTAQLLIFLRGV 199
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Medaka
Match: ENSORLT00000028655.1 (pep primary_assembly:ASM223467v1:8:18412528:18414615:1 gene:ENSORLG00000023148.1 transcript:ENSORLT00000028655.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 74.3294 bits (181), Expect = 8.006e-17 Identity = 45/139 (32.37%), Postives = 69/139 (49.64%), Query Frame = 1 Query: 145 WELEYFCSEVNDKIICLICNSAIVHQSYLMLXXXXXXXXXXXXXTKD**DS-----KLREFKLGLKKQQSMITKVSRESEAVVHTSYFLSQLITKHSKPFTKGDFIKGCIRNAAEIVYPDKE-----MSLYRNIAVERV 531 WE EY +EV+ K +CL+C + L K+ D+ K+ E K GLK QQ++ T +S A V S+ +++ + K ++PFT+G+FIK C+ + V PDK +SL RN ER+ Sbjct: 24 WEAEYMFTEVHGKPVCLLCGERLSVMKEYNLRRHHETSKKHTDKDKNM-DTEQRLQKVEELKRGLKSQQALFTIAKSQSGAAVKASFIVAEEVEKSARPFTEGEFIKNCMLKVCDAVCPDKRQLFSNVSLSRNTVAERI 161 HSP 2 Score: 31.187 bits (69), Expect = 8.006e-17 Identity = 13/32 (40.62%), Postives = 21/32 (65.62%), Query Frame = 3 Query: 633 LLLRECDKDFNIYEELLELVLIHGTTTAENIF 728 + +R D +I EELL L +HGTTT ++++ Sbjct: 200 IFIRGVDSSLSITEELLALRPLHGTTTGQDLY 231
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Medaka
Match: ENSORLT00000038238.1 (pep primary_assembly:ASM223467v1:3:5078314:5081250:-1 gene:ENSORLG00000025675.1 transcript:ENSORLT00000038238.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 55.4546 bits (132), Expect = 7.874e-12 Identity = 42/153 (27.45%), Postives = 71/153 (46.41%), Query Frame = 1 Query: 103 KRKIADEHRNFQENWELEYFCSEVNDKIICLICNSA---IVHQSYLMLXXXXXXXXXXXXXTKD**DSKLREFKLGLKKQQSMITKVSRESEAVVHTSYFLSQLITKHSKPFTKGDFIKGCIRNAAEIVYPD-----KEMSLYRNIAVERVTD 537 + K+ R FQE W+ +Y ++ +CL+C A +V + L ++ + + +E K L+ QQS TK + + EA V S+ +++ I SK F++G F+ C+ E V PD K +SL +N RV + Sbjct: 8 REKVDANGRLFQERWDGKYLFVLEGERPVCLLCYEAVSLVVKEYNLRSHLDTKHGAKYAKASLQEKKQIAQELKGKLQSQQSFFTKSTVKEEASVKASFIMAEHIAHASKSFSEGAFLGQCMLKVYEQVCPDQLQTFKNVSLSQNTIAGRVKE 160 HSP 2 Score: 33.113 bits (74), Expect = 7.874e-12 Identity = 15/36 (41.67%), Postives = 24/36 (66.67%), Query Frame = 3 Query: 630 LLLLRECDKDFNIYEELLELVLIHGTTTAENIFNCV 737 LL+ + D +I E+LL++ IHGTTT ++I + V Sbjct: 173 LLMKAQTTLDLSITEKLLDVAAIHGTTTGQDIVDAV 208
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Medaka
Match: ENSORLT00000027093.1 (general transcription factor II-I repeat domain-containing protein 2B-like [Source:NCBI gene;Acc:111947639]) HSP 1 Score: 62.003 bits (149), Expect = 1.157e-11 Identity = 39/129 (30.23%), Postives = 70/129 (54.26%), Query Frame = 1 Query: 154 EYFCSEVNDKIICLICNSAI-VHQSYLMLXXXXXXXXXXXXXTKD**DSKLREFKLG-LKKQQSMITKVSRESEAVVHTSYFLSQLITKHSKPFTKGDFIKGCIRNAAEIVYPDKEMSLYRNIAVERVT 534 +YF +EV + +CLIC + + V + Y + + D +K E L L+ QQ ++TK+ A V TS+ +S I ++SKPF+ G+F+K C+ ++ ++ P+ + S + NI++ R T Sbjct: 8 KYFFTEVKGEAVCLICGAKVAVFKDYNLNRHYTTKHEEKYRNLSDEERAKESEALLQKLQTQQGLLTKLHAPRNAAVRTSFVISHKIARNSKPFSDGEFVKECLLDSVALICPETK-SAFENISLSRRT 135 HSP 2 Score: 26.1794 bits (56), Expect = 1.157e-11 Identity = 13/40 (32.50%), Postives = 22/40 (55.00%), Query Frame = 2 Query: 545 QIKANSFCFEAFSIACD*STNIGSISQFTAFITRVRQRFQ 664 Q+K+ + F+ FS+A D S +I +Q F+ + FQ Sbjct: 150 QLKSRAADFDCFSLALDESCDIRDTAQLLIFLRGITAEFQ 189
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Medaka
Match: ENSORLT00000038351.1 (pep primary_assembly:ASM223467v1:3:5078117:5081344:-1 gene:ENSORLG00000025675.1 transcript:ENSORLT00000038351.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 53.9138 bits (128), Expect = 2.037e-11 Identity = 42/151 (27.81%), Postives = 70/151 (46.36%), Query Frame = 1 Query: 109 KIADEHRNFQENWELEYFCSEVNDKIICLICNSA---IVHQSYLMLXXXXXXXXXXXXXTKD**DSKLREFKLGLKKQQSMITKVSRESEAVVHTSYFLSQLITKHSKPFTKGDFIKGCIRNAAEIVYPD-----KEMSLYRNIAVERVTD 537 K+ R FQE W+ +Y ++ +CL+C A +V + L ++ + + +E K L+ QQS TK + + EA V S+ +++ I SK F++G F+ C+ E V PD K +SL +N RV + Sbjct: 4 KVDANGRLFQERWDGKYLFVLEGERPVCLLCYEAVSLVVKEYNLRSHLDTKHGAKYAKASLQEKKQIAQELKGKLQSQQSFFTKSTVKEEASVKASFIMAEHIAHASKSFSEGAFLGQCMLKVYEQVCPDQLQTFKNVSLSQNTIAGRVKE 154 HSP 2 Score: 33.113 bits (74), Expect = 2.037e-11 Identity = 15/36 (41.67%), Postives = 24/36 (66.67%), Query Frame = 3 Query: 630 LLLLRECDKDFNIYEELLELVLIHGTTTAENIFNCV 737 LL+ + D +I E+LL++ IHGTTT ++I + V Sbjct: 167 LLMKAQTTLDLSITEKLLDVAAIHGTTTGQDIVDAV 202
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Planmine SMEST
Match: SMESG000037770.1 (SMESG000037770.1) HSP 1 Score: 63.929 bits (154), Expect = 4.165e-13 Identity = 42/150 (28.00%), Postives = 77/150 (51.33%), Query Frame = 1 Query: 112 IADEHRNFQENWELEYFCSEVNDKIICLICNSAI-VHQSYLMLXXXXXXXXXXXXXTKD**DSKLR----EFKLGLKKQQSMITKVSRESEAVVHTSYFLSQLITKHSKPFTKGDFIKGCIRNAAEIVYPD-----KEMSLYRNIAVERV 531 I +E R F ++W +YF ++ +CLIC ++ V + Y + + + I + ++LR + LK++Q++ K S EA S ++ I KH+KPF++G+F+K C+ A+I+ P+ + +SL R V R+ Sbjct: 529 IEEECRTFNKDWTSKYFFVDIKTNAVCLICRESVAVFKEYNLKRHFQTKHGNFGINLNE---TELRRKADDLVRSLKQEQTIFLKPSSIQEAATKASLVIAHKIVKHNKPFSEGEFVKDCVLEIADIICPENKKKFENISLSRRTVVRRI 675 HSP 2 Score: 28.4906 bits (62), Expect = 4.165e-13 Identity = 16/42 (38.10%), Postives = 23/42 (54.76%), Query Frame = 2 Query: 536 ISDQIKANSFCFEAFSIACD*STNIGSISQFTAFITRVRQRF 661 +SDQ+ F+ FSIA D ST+I +Q FI + +F Sbjct: 682 LSDQLLNKIKTFQWFSIALDESTDIQDTAQLLIFIRGIDDKF 723
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Planmine SMEST
Match: SMESG000045419.1 (SMESG000045419.1) HSP 1 Score: 50.447 bits (119), Expect = 6.723e-7 Identity = 42/149 (28.19%), Postives = 69/149 (46.31%), Query Frame = 1 Query: 94 SNTKRKIADEHRNFQENWELEYFCSEVNDKIICLICNS--AIVHQSYLMLXXXXXXXXXXXXXTKD**DSKLREFKLGLKKQQSMITKVSRESEAVVHTSYFLSQLITKHSKPFTKGDFIKGCIRNAAEIVYPDKEMSLYRNIAVERVT 534 S+ KRKIADE R F E W +YF +E K +CLI N A++ + + + + +T + +K R K L QQS+ K +PFT +F+K C+ AE + P+ + +L+++I++ T Sbjct: 2 SSRKRKIADEGRVFNEEWNSKYFFTENGGKPLCLIFNKSVAVMKEYNVKRHYEKEHERQYKDLTGEIRKNKFRTLKASLTAQQSIFMK-----------------------RPFTDLEFVKRCLVAVAEKLCPETK-TLFQDISLSART 126 The following BLAST results are available for this feature:
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 3
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of General transcription factor II-I repeat domain-containing protein 2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30016423 ID=SMED30016423|Name=General transcription factor II-I repeat domain-containing protein 2|organism=Schmidtea mediterranea sexual|type=transcript|length=796bpback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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