Small subunit ribosomal protein S27

Overview
NameSmall subunit ribosomal protein S27
Smed IDSMED30016395
Length (bp)1523
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Small subunit ribosomal protein S27 (SMED30016395) t-SNE clustered cells

Violin plots show distribution of expression levels for Small subunit ribosomal protein S27 (SMED30016395) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Small subunit ribosomal protein S27 (SMED30016395) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Small subunit ribosomal protein S27 (SMED30016395) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30016395

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30016395SMESG000021355.1 SmedASXL_009966SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
posterior sideSMED30016395SMESG000021355.1 dd_Smed_v4_6708_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
posterior muscle cellSMED30016395SMESG000021355.1 dd_Smed_v4_6708_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Small subunit ribosomal protein S27 vs. TrEMBL
Match: A0A5K3EKF5 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.467e-45
Identity = 148/478 (30.96%), Postives = 242/478 (50.63%), Query Frame = 3 
Query:   81 KFPSNLIKRFLLTPAYSCDSIWNNRLNGIE-CKLSANDLAIHIQQNLSSDTPISPIDFDILMNKINEIDIRNLKFVIDIIKSFRRTQSSQKVFESSSHAAIRNLIEITAFSQIIDFIRNRETSGIFLDEISVNMLLDEFITKKQWENAFFTSVEWVLQDCLSDSKL-----AIPLGLIS----CLNYWKESLWKYEAPEVKPSKEPIEYKWVPYLKPNGFDDHFDLCKDCHRKRL-LGKC---ISMLIGHLNTII--DNEVLDIRIV--NYXXXXXXXXXXXXXXXXXXXMITMETWLANNDVKLNSELIAIVTELISSVERTNPDNPV--PHPT-FTEEKVTETLIKFQDLVSEFKSKQLVDEQDLVSSALVFFASQIDRLSNSEVDLVARKYEKFNADRRAAFEREKLVLANKEILKESKAKLLELTNQEEYIKYFENIPEIMRQSWLAQRTLKEKQFSCRKSNIENLENLEKKSK 1451
            +   N+I+R  L+ AYSC   WN+RL+      LSA+DL   I   LS+  P++ +D+DI +NK+ E D + L+++ +I+  F+ TQSS     S+SHA +RN I      ++++ +R+R ++G+FLDE+S N LL  F+ K  +  A     E  LQ  L    L     A+ L  IS       Y++ S       EV    + I+Y+ VPYL+   +D  FD+     R RL LG C   ++  I     ++  D  +LD++ V  +       L+  A         ++  + L+N    ++ E+++ V  LI S +R + D+ V    PT  TE  V  TL  F++LV++F   +     D V+S LV   S+   +  +E   V   Y  F   R   +  E   +  +E+L   K++L EL ++EE + YF++  EI  ++WLA RT KE+ +S  K   ++L N ++K +
Sbjct:   10 RHAPNVIRRGFLSDAYSCTEKWNSRLSSQAFGNLSASDLGTQIAHRLSNKVPVTSLDYDIFVNKVQETDKQFLEYLENIMYKFQTTQSSLNTLASTSHAFVRNYIYHNEEYRLLELLRSRASTGVFLDEVSANYLLKRFVQKHDYPAAISVMWELCLQSHLEQQPLTPYLTALWLHTISQSIKSEKYFERSEVDEADTEVVDDGD-IDYRSVPYLRNPNYDGWFDI----DRPRLQLGHCALAVASAIERQALVLFSDTLILDLKEVAPSLSLLGFALVEDANRLLTFAKTVSESSGLSNC---IDQEVLSAVERLIESSDRRSDDSEVKRGEPTLLTESDVNLTLKTFKELVAKFPPTK-KSFHDTVAS-LVSIISKDAEILKAEQARVHELYTSFETTREEIWRTEVERMRRREVLSSVKSRLRELADEEERLTYFDHTKEIEHKAWLAPRTRKERSWSRMKEWKKDLRNYQQKRQ 477
[Close]
BLAST of Small subunit ribosomal protein S27 vs. TrEMBL
Match: A0A0R3T2F9 (Uncharacterized protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS1116 PE=4 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 4.868e-44
Identity = 134/482 (27.80%), Postives = 231/482 (47.93%), Query Frame = 3 
Query:   87 PSNLIKRFLLTPAYSCDSIWNNRLNGIE-CKLSANDLAIHIQQNLSSDTPISPIDFDILMNKINEIDIRNLKFVIDIIKSFRRTQSSQKVFESSSHAAIRNLIEITAFSQIIDFIRNRETSGIFLDEISVNMLLDEFITKKQWENAFFTSVEWVLQDCLSDSKLAIPLGLISCLNYWKESLWKYEAPEVKPSKE-----------------PIEYKWVPYLKPNGFDDHFDLCKDCHRKRL-LGKCISMLIGHLNTIID---NEVLDIRIVNYXXXXXXXXXXXXXXXXXXXMITMETWLANNDVKLNSELIAIVTELISSVERTNPDNPVPHP---TFTEEKVTETLIKFQDLVSEF--KSKQLVDEQDLVSSALVFFASQIDRLSNSEVDLVARKYEKFNADRRAAFEREKLVLANKEILKESKAKLLELTNQEEYIKYFENIPEIMRQSWLAQRTLKEKQFSCRKSNIENLENLEKKSK 1451
            P     R +LT AY+C   WNNR +      LSA DL I IQ  L++   ++P+DFDI +NK+ + D   L F+  I   FR TQ+S K   S+ HA +RN I      ++++ ++NR  SGIFLDE+S ++L + F+ K+ + +A     E  LQ  L   +L   L           +LW + A E+  S                     +++ VPYL+   +D  FD+     R RL LG C+  L   + + +    +  +++ + N        L      +    +++    L  N ++++ +++ +V +LI S +R + D+ +        TE +VT TL +F+ + S      K      D +  ++    S    + ++E++LV R Y  F   R A ++ E  +   +E++   K++L  L ++EE I YFEN   +   +WLA RT  E+Q+S  K   ++L+  ++K +
Sbjct:   12 PFKAFSRLILTDAYACTEKWNNRFSSSTFGDLSAGDLGIQIQYRLNNQASVTPLDFDIFVNKVQQSDTNFLDFLETIAYKFRETQNSLKTLSSTHHAFVRNYIHHNEIHRVLEVLKNRAQSGIFLDEVSASILQESFVKKQDFVSALSVMWELCLQSHLEQEQLRPYLS----------ALWLHTANELFKSNTLFERSEVIEEEEEEVDMDTDFQSVPYLRNPNYDGWFDI----KRPRLQLGHCLFALSNAIQSRLSPIFSPAMELNLKN--LVPRLHLLGYALLEDSKKLLSFAASL--NKLEIDRDVLTVVEKLIESSDRRSDDSEIKKGFPILLTESEVTSTLEQFKTITSTLTPSDKSFHTTIDEIVKSITTDPS----IQSAEIELVERLYSDFECTRAAVWDNEAKLHRRREVISTVKSRLRSLADEEERISYFENAGTVEHHAWLAPRTRSERQWSRLKEWKKDLKEYQQKRQ 471
[Close]
BLAST of Small subunit ribosomal protein S27 vs. TrEMBL
Match: A0A564YJE4 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS6559 PE=4 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.430e-39
Identity = 134/493 (27.18%), Postives = 228/493 (46.25%), Query Frame = 3 
Query:   87 PSNLIKRFLLTPAYSCDSIWNNRLNG-IECKLSANDLAIHIQQNLSSDTPISPIDFDILMNKINEIDIRNLKFVIDIIKSFRRTQSSQKVFESSSHAAIRNLIEITAFSQIIDFIRNRETSGIFLDEISVNMLLDEFITKKQWENAFFTSVEWVLQDCLSDSKLAIPLGLISCLNYWKESLWKYEAPEVKPSKEPIE-----------------YKWVPYLKPNGFDDHFDLCKDCHRKRL-LGKCISMLIGHLNTIIDNE----------------VLDIRIVNYXXXXXXXXXXXXXXXXXXXMITMETWLANNDVKLNSELIAIVTELISSVERTNPDNPVPHPT---FTEEKVTETLIKFQDLVSEF--KSKQLVDEQDLVSSALVFFASQIDRLSNSEVDLVARKYEKFNADRRAAFEREKLVLANKEILKESKAKLLELTNQEEYIKYFENIPEIMRQSWLAQRTLKEKQFSCRKSNIENLENLEKK 1445
            P     R +LT AY+C   WN+R +      LSA+DL   IQ  L++   I+P+D+DI +NK+ +     L F+      FR TQ+S K   S+ HA +R+ I      +++D ++NR  +GIFLDE+S N+L + FI K+ + +A     E  LQ  L   +L   L           +LW + A E+  S    E                 ++ VPYL+   +D  FD+     R RL LG C    +  L++ I+N+                V  +R++ Y              +    ++     L  ++V  ++E++++  +LI S +R   D+ +        TE +V  TL +F+ + S      K      D +  ++   AS    +  +E++LV   Y  F + R A ++ E  +   +E++   K++L  L ++EE I YFEN+  I  ++WLA RT  E+Q+S  K   ++L   +++
Sbjct:   12 PLKAFSRLILTDAYACTEKWNSRFSSNTFGNLSASDLGTQIQYRLNNRASITPLDYDIFVNKVQQSSKSFLDFLETTTYKFRETQNSLKTLPSTHHAFVRDYIHHNEIERVLDILKNRAQTGIFLDEVSANLLQESFIKKEDFSSALSVMWELCLQSHLEQEQLRPYLT----------ALWLHTANELIRSDVLFERSEVVEEVEEEIDMDTDFQSVPYLRNPNYDGWFDI----RRPRLQLGHC----LFSLSSAIENDLSPIFSPSMAINLKDLVPRLRLLAY-----------ALVEDSKNLLAFANSLLKSNV-FDTEVLSVAEKLIESSDRRTDDSEIRKGVPILLTESEVASTLEQFKVMTSGLTPSRKSFHTTIDEIVKSITTDAS----IQAAEIELVESLYSDFESTRAAVWKNEAELHRRREVISTVKSRLRSLADEEERISYFENVDTIEHRAWLAPRTRSERQWSRLKEWKKDLREYQQR 470
[Close]
BLAST of Small subunit ribosomal protein S27 vs. TrEMBL
Match: A0A4S2LEX6 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_007675 PE=4 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.916e-37
Identity = 127/464 (27.37%), Postives = 225/464 (48.49%), Query Frame = 3 
Query:   93 NLIKRFLLTPAYSCDSIWNNRLNGIECK-LSANDLAIHIQQNLSSDTPISPIDFDILMNKINEIDIRNLKFVIDIIKSFRRTQSSQKVFESSSHAAIRNLIEITAFSQIIDFIRNRETSGIFLDEISVNMLLDEFITKKQWENAFFTSVEWVLQDCLSDSKLAIPLGLISCLNYWKESLWKYEAPE------VKPSKEPIEYKWVPYLKPNGFDDHFDLCKDCHRKRLLGKCISMLIGHLNTIIDNEVLDIRIVN--------YXXXXXXXXXXXXXXXXXXXMITMETWLANNDVKLNSELIAIVTELISSVE--RTNPDNPVPH------PTFTEEKVTETLIKFQDLVSEFKSKQLVDEQDLVSSALVFFASQIDRLSN-----SEVDLVARKYEKFNADRRAAFEREKLVLANKEILKESKAKLLELTNQEEYIKYFENIPEIMRQSWLAQRTLKEKQFS 1400
            ++  R +L   Y CD  W  RL     K +SA DL + I   + S   +SP+D+DI  NK++E+D  +  F+  I+K + +TQS+ +V +S++HA +R  +      +I++ +R R  +G+FLDE+S N+LLD F+  ++W  A     E  LQD    +    P+ +   L+  K+ +    A +         + E +EYK+V +++   +D+ FD+     R RL    +   + HL+ +  N +  IR+ +         L   L L G A  E+LD LM  +E +     +++      ++ +LI +V+  +T PDN  P       PT TE  +    +K    + E  ++ + D  D  S    F   ++  L N     +E   V + Y +F  +R   +    +    + +++ +K  L +L ++EE +  F    EI+ +SWLA R  KE+++S
Sbjct:   21 HMPSRNILPQTYRCDHHWEQRLAHDSFKSVSARDLGLSILHTIDSGGSVSPLDYDIFANKLHELDAISTDFIESIVKKYSKTQSAVQVVDSTAHAIVRGYLGFQRQEKILELLRERAYTGVFLDEVSANLLLDHFVDVQKWSAAIEVVWELCLQDYFQSAASISPVTVALALHASKQLIQAGLAEDTFTDSSADNADEEVEYKFVTFIRNPSYDNFFDI----QRPRLK---LGFTLIHLSDLFSNRLKSIRLSSDSVRSLAPRLHQTLRLFGHAYSEQLDQLMQELEKFQTAEQLQIAGLSAVVLDKLIHAVQSCQTRPDNTAPARGEPVLPTATEVGLAVEQVKG---LRELCAQAVAD--DFFSRCEQFIQKEV--LGNADCMCAETAAVEQLYNRFEDERNRIWTDHLISARQRAVIETTKQSLRDLVDEEERLTCFRQSEEILHKSWLAPRNHKERRWS 470
[Close]
BLAST of Small subunit ribosomal protein S27 vs. TrEMBL
Match: A0A504Y6W6 (Uncharacterized protein OS=Fasciola gigantica OX=46835 GN=FGIG_10141 PE=4 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.165e-33
Identity = 121/456 (26.54%), Postives = 220/456 (48.25%), Query Frame = 3 
Query:   96 LIKRFLLTPAYSCDSIWNNRLNGIECK-LSANDLAIHIQQNLSSDTPISPIDFDILMNKINEIDIRNLKFVIDIIKSFRRTQSSQKVFESSSHAAIRNLIEITAFSQIIDFIRNRETSGIFLDEISVNMLLDEFITKKQWENAFFTSVEWVLQDCLS-DSKLAIPLG--LISCLNYWKESLWKYEAPEVKPSKEPIEYKWVPYLKPNGFDDHFDLCKDCHRKRLLGKCISMLIGH--------------LNTIIDNEVLDIRIVNYXXXXXXXXXXXXXXXXXXXMITMETWLANNDVKLNSELIAIVTELISSVERTNP---DNPVPHPTFTEEKVTETLIKFQDLVSEFKSKQLVDEQDLVSSALVFFASQIDRLSNSEVDLVARKYEKFNADRRAAFEREKLVLANKEILKESKAKLLELTNQEEYIKYFENIPEIMRQSWLAQRTLKEKQFS 1400
            L  R  L  +Y C+ +W +RL+    K  +A DL + I Q +SS+  +SP+D+D   NKI+E+DI +  F+ ++I+ +  TQS+ +V +SS+HA +R  ++      +++  R R ++G+FLD I+ NML D F   + W +      E  LQ+  + DS   +PL   L++ +    E   +        S E ++Y +VPY++   +D+ FD+ +   +   L   +  LI +              LN +    V  +++     +           KL      +E  L + DV    E +  VTE + + + T P     PV HPT +E   T   I+    +S+   K  + E   +++ +    + +D     E+  V++ Y++F  +R A +   + V     I++ ++  L E+ ++EE + YF ++  I  ++WLA RT KE+ +S
Sbjct:   20 LSSRGFLPQSYYCNELWQSRLSHSSFKNTNARDLGVAILQAISSNRVVSPLDYDTFANKIHELDIVSTDFIENVIEKYTHTQSAIEVVDSSAHALVRGFLDFRKQDNVLNLARRRASTGVFLDAIAANMLADRFTDLEDWSSVIHVMWELCLQNYFNEDSVSVLPLAFSLLAGVKLVHELPPEPVLTNTDESGE-VQYVFVPYVRNPNYDNFFDIERVRLKLGFLWLQVVQLINNRAHSVDTVPEMREELNRVCPKLVTGLKLFGLSLSEQLGPLKTELSKLSSAE-QLEKTLLSTDV---FEKLLKVTESVCARDDTEPIERGQPV-HPTKSEVASTVAEIRNLTEISKQLPKDFLTESICLANEITSNKACLDH----EIAAVSQLYDRFAHEREARWSARQEVNREHTIIRNARQTLREIVDEEERLNYFRDLETISLKAWLAPRTRKERHWS 465
[Close]
BLAST of Small subunit ribosomal protein S27 vs. Planmine SMEST
Match: SMESG000021355.1 (SMESG000021355.1)

HSP 1 Score: 907.516 bits (2344), Expect = 0.000e+0
Identity = 470/473 (99.37%), Postives = 471/473 (99.58%), Query Frame = 3 
Query:   60 MLHRFISKFPSNLIKRFLLTPAYSCDSIWNNRLNGIECKLSANDLAIHIQQNLSSDTPISPIDFDILMNKINEIDIRNLKFVIDIIKSFRRTQSSQKVFESSSHAAIRNLIEITAFSQIIDFIRNRETSGIFLDEISVNMLLDEFITKKQWENAFFTSVEWVLQDCLSDSKLAIPLGLISCLNYWKESLWKYEAPEVKPSKEPIEYKWVPYLKPNGFDDHFDLCKDCHRKRLLGKCISMLIGHLNTIIDNEVLDIRIVNYXXXXXXXXXXXXXXXXXXXMITMETWLANNDVKLNSELIAIVTELISSVERTNPDNPVPHPTFTEEKVTETLIKFQDLVSEFKSKQLVDEQDLVSSALVFFASQIDRLSNSEVDLVARKYEKFNADRRAAFEREKLVLANKEILKESKAKLLELTNQEEYIKYFENIPEIMRQSWLAQRTLKEKQFSCRKSNIENLENLEKKSKPKFVVQFDS 1478
            MLHRFISKFPSNLIKRFLLTP YSCDSIWNNRLNGIECKLSANDLAIHIQQNLSSDTPISPIDFDILMNKINEIDIRNLKFVIDIIKSFRRTQSSQKVFESSSHAAIRNLIEITAFSQIIDFIRNRETSGIFLDEISVNMLLDEFITKKQWENAFFTSVEWVLQDCLSDSKLAIPLGLISCLNYWKESLWKYEAPEVKPSKEPIEYKWVPYLKPNGFDDHFDLCKDCHRKRLLGKCISMLIGHLNTIIDNEVLDI IVNYLKNNLGLLGLALHEKLDLLMITMETWLANNDVKLNSELIAIVTELISSVERTNPDNPVPHPTFTEEKVTETLIKFQDLVSEFKSKQLVDEQDLVSSALVFF+SQIDRLSNSEVDLVARKYEKFNADRRAAFEREKLVLANKEILKESKAKLLELTNQEEYIKYFENIPEIMRQSWLAQRTLKEKQFSCRKSNIENLENLEKKSKPKFVVQFDS
Sbjct:    1 MLHRFISKFPSNLIKRFLLTPTYSCDSIWNNRLNGIECKLSANDLAIHIQQNLSSDTPISPIDFDILMNKINEIDIRNLKFVIDIIKSFRRTQSSQKVFESSSHAAIRNLIEITAFSQIIDFIRNRETSGIFLDEISVNMLLDEFITKKQWENAFFTSVEWVLQDCLSDSKLAIPLGLISCLNYWKESLWKYEAPEVKPSKEPIEYKWVPYLKPNGFDDHFDLCKDCHRKRLLGKCISMLIGHLNTIIDNEVLDIGIVNYLKNNLGLLGLALHEKLDLLMITMETWLANNDVKLNSELIAIVTELISSVERTNPDNPVPHPTFTEEKVTETLIKFQDLVSEFKSKQLVDEQDLVSSALVFFSSQIDRLSNSEVDLVARKYEKFNADRRAAFEREKLVLANKEILKESKAKLLELTNQEEYIKYFENIPEIMRQSWLAQRTLKEKQFSCRKSNIENLENLEKKSKPKFVVQFDS 473
The following BLAST results are available for this feature:
BLAST of Small subunit ribosomal protein S27 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Small subunit ribosomal protein S27 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Small subunit ribosomal protein S27 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Small subunit ribosomal protein S27 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Small subunit ribosomal protein S27 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Small subunit ribosomal protein S27 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Small subunit ribosomal protein S27 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Small subunit ribosomal protein S27 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A5K3EKF53.467e-4530.96Uncharacterized protein OS=Mesocestoides corti OX=... [more]
A0A0R3T2F94.868e-4427.80Uncharacterized protein OS=Rodentolepis nana OX=10... [more]
A0A564YJE43.430e-3927.18Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
A0A4S2LEX62.916e-3727.37Uncharacterized protein OS=Opisthorchis felineus O... [more]
A0A504Y6W61.165e-3326.54Uncharacterized protein OS=Fasciola gigantica OX=4... [more]
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BLAST of Small subunit ribosomal protein S27 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Small subunit ribosomal protein S27 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Small subunit ribosomal protein S27 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Small subunit ribosomal protein S27 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Small subunit ribosomal protein S27 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Small subunit ribosomal protein S27 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000021355.10.000e+099.37SMESG000021355.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30016395 ID=SMED30016395|Name=Small subunit ribosomal protein S27|organism=Schmidtea mediterranea sexual|type=transcript|length=1523bp
ATTTTTTCAAAAACTTTAAATAATATATTCTTTATTATATCATAAAATTT
TACTGTAAAATGTTACATAGATTTATTTCAAAATTTCCAAGCAATTTGAT
TAAACGATTTCTTCTAACCCCAGCTTATTCTTGTGATTCTATATGGAATA
ATCGACTTAATGGCATCGAGTGCAAATTATCAGCAAATGATTTGGCTATT
CATATACAACAAAATTTATCATCTGATACACCAATTTCTCCCATAGATTT
TGATATTTTAATGAATAAAATTAATGAAATTGATATAAGAAATTTAAAGT
TTGTCATTGATATTATCAAAAGCTTTCGCCGAACGCAATCATCACAAAAG
GTATTCGAATCATCGTCTCATGCTGCAATACGGAATCTTATTGAGATTAC
GGCATTCAGTCAGATAATAGATTTTATTAGAAATCGAGAAACGTCAGGGA
TATTTCTTGATGAGATCAGTGTTAACATGCTTCTTGATGAATTCATCACT
AAAAAGCAATGGGAAAATGCCTTTTTCACTAGCGTTGAATGGGTTTTGCA
GGATTGTCTCAGCGATAGCAAACTAGCAATTCCGCTGGGCCTTATTTCGT
GTTTAAATTACTGGAAAGAATCCTTATGGAAATATGAAGCCCCGGAAGTT
AAGCCTTCCAAAGAACCAATTGAATATAAATGGGTTCCTTATCTAAAACC
GAATGGTTTCGATGATCATTTTGATCTCTGTAAGGATTGTCATAGAAAGA
GATTATTGGGGAAATGCATTTCAATGTTGATTGGACATTTGAATACAATT
ATCGACAATGAAGTACTCGACATACGAATTGTGAATTATTTGAAAAATAA
TCTCGGTTTACTCGGATTGGCTTTGCATGAAAAATTGGATTTATTAATGA
TAACAATGGAAACTTGGCTCGCTAATAATGATGTTAAATTGAACTCAGAA
TTGATTGCAATTGTAACCGAGTTGATATCGAGTGTTGAGCGCACCAATCC
CGATAATCCTGTGCCTCATCCAACATTTACAGAAGAAAAGGTTACGGAAA
CTCTAATCAAATTTCAGGATTTAGTGTCTGAATTTAAATCTAAACAACTT
GTCGATGAACAAGACCTTGTAAGTAGCGCTTTGGTTTTTTTCGCTAGTCA
AATAGATAGGCTCAGTAATAGTGAGGTGGATCTTGTTGCTAGGAAGTATG
AAAAATTCAATGCCGATCGAAGGGCAGCATTTGAGAGAGAAAAATTAGTT
CTCGCTAATAAAGAAATCCTCAAAGAATCAAAGGCAAAATTATTAGAATT
GACAAATCAGGAGGAGTATATCAAATACTTTGAAAACATTCCGGAAATCA
TGCGCCAATCCTGGCTGGCTCAGCGCACACTCAAGGAAAAGCAATTTTCT
TGTAGGAAGTCAAATATTGAAAATCTGGAAAATTTAGAAAAGAAGAGCAA
ACCAAAATTTGTTGTTCAATTCGATTCATGAAATTGTTTTTAATCAATGC
ATTTGTTTAGCTTTAAAAAAAAA
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protein sequence of SMED30016395-orf-1

>SMED30016395-orf-1 ID=SMED30016395-orf-1|Name=SMED30016395-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=474bp
MLHRFISKFPSNLIKRFLLTPAYSCDSIWNNRLNGIECKLSANDLAIHIQ
QNLSSDTPISPIDFDILMNKINEIDIRNLKFVIDIIKSFRRTQSSQKVFE
SSSHAAIRNLIEITAFSQIIDFIRNRETSGIFLDEISVNMLLDEFITKKQ
WENAFFTSVEWVLQDCLSDSKLAIPLGLISCLNYWKESLWKYEAPEVKPS
KEPIEYKWVPYLKPNGFDDHFDLCKDCHRKRLLGKCISMLIGHLNTIIDN
EVLDIRIVNYLKNNLGLLGLALHEKLDLLMITMETWLANNDVKLNSELIA
IVTELISSVERTNPDNPVPHPTFTEEKVTETLIKFQDLVSEFKSKQLVDE
QDLVSSALVFFASQIDRLSNSEVDLVARKYEKFNADRRAAFEREKLVLAN
KEILKESKAKLLELTNQEEYIKYFENIPEIMRQSWLAQRTLKEKQFSCRK
SNIENLENLEKKSKPKFVVQFDS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000101muscle cell
PLANA:0000142posterior region of the whole animal
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR034913MRPS27/PTCD2
IPR019266MRPS27
Vocabulary: cellular component
TermDefinition
GO:0005840ribosome
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034913MRPS27/PTCD2PFAMPF10037MRP-S27coord: 13..408
e-value: 1.9E-60
score: 204.8
IPR01926628S ribosomal protein S27, mitochondrialPANTHERPTHR21393MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S27coord: 11..432